BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16987
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 10 VVLIAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYR 69
+V + Y+NSL V DD+ A+ N+D+ T + +F NDFWGTP+S+ SHKSYR
Sbjct: 17 IVSVVAACYWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYR 76
Query: 70 PLTTLTFR 77
PLT LTFR
Sbjct: 77 PLTVLTFR 84
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 10 VVLIAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYR 69
+V + Y+NSL V DD+ A+ N+D+ T + +F NDFWGTP+S+ SHKSYR
Sbjct: 12 IVGVVTACYWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSYR 71
Query: 70 PLTTLTFR 77
PLT LTFR
Sbjct: 72 PLTVLTFR 79
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 44/65 (67%)
Query: 13 IAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLT 72
+A +Y N+LG V+DD A+ N DV GGT + F+NDFWGTPL+D SH S+RPL
Sbjct: 41 LAFVLYLNTLGAGFVYDDRRAILANADVSGGTPWQRSFSNDFWGTPLTDSGSHGSWRPLC 100
Query: 73 TLTFR 77
L+FR
Sbjct: 101 VLSFR 105
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
GN=Tmtc2 PE=2 SV=1
Length = 836
Score = 72.8 bits (177), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 13 IAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLT 72
+ + +Y N+L D +DD A+ NQD+L T +F NDFWGT L+ SHKSYRPL
Sbjct: 10 LGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLC 69
Query: 73 TLTFR 77
TL+FR
Sbjct: 70 TLSFR 74
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 13 IAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLT 72
+ + +Y N+L D +DD A+ NQD+L T +F NDFWGT L+ SHKSYRPL
Sbjct: 10 LGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSGSHKSYRPLC 69
Query: 73 TLTFR 77
TL+FR
Sbjct: 70 TLSFR 74
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 40/60 (66%)
Query: 18 YFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTFR 77
Y+NS LV DDI A+ N+D+ T + +F NDFWGTP+ SHKSYRPLT LTFR
Sbjct: 48 YYNSTQCGLVFDDISAIRDNKDLRPHTPLINVFLNDFWGTPMRKEQSHKSYRPLTVLTFR 107
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 18 YFNSLGGDLVHDDIVALARNQDVLGGTSVG-QMFTNDFWGTPLSDPASHKSYRPLTTLTF 76
Y SL G+ VHDD+ A+ N DV GT + +F NDFWG L+D SHKSYRPL L+F
Sbjct: 40 YGRSLRGEFVHDDVWAIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSF 99
Query: 77 R 77
R
Sbjct: 100 R 100
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 13 IAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLT 72
+A+ + S GD V DD A+ N+D+ T +G ++ +DFWG+ LS SHKSYRPLT
Sbjct: 29 VAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKSYRPLT 88
Query: 73 TLTFR 77
LTFR
Sbjct: 89 VLTFR 93
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 10 VVLIAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYR 69
V +++ + S GD V DD A+ N+D+ T +G ++ +DFWG+ LS SHKSYR
Sbjct: 25 VGFVSLLCFARSYDGDFVFDDSEAIVNNKDLQSDTPLGDLWHHDFWGSKLSSNTSHKSYR 84
Query: 70 PLTTLTFR 77
PLT LTFR
Sbjct: 85 PLTVLTFR 92
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus
laevis GN=tmtc2 PE=2 SV=1
Length = 836
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 36/55 (65%)
Query: 23 GGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTFR 77
G D +DD A+ NQD+L T +F NDFWGT L+ SHKSYRPL TL+FR
Sbjct: 20 GADFCYDDSRAIKTNQDLLPETPWNHIFFNDFWGTLLTHSGSHKSYRPLCTLSFR 74
>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing protein CG31690
OS=Drosophila melanogaster GN=CG31690 PE=2 SV=3
Length = 859
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 13 IAVGVYFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLT 72
+A +Y N+L V+DD A+ N DV G + + NDFWGTPL D SH S+RPL
Sbjct: 29 LAFVLYLNTLNAGFVYDDRRAILANGDVTGARPLANLLRNDFWGTPLVDSGSHGSWRPLC 88
Query: 73 TLTFR 77
L+FR
Sbjct: 89 VLSFR 93
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 18 YFNSLGGDLVHDDIVALARNQDVLGGTSVG-QMFTNDFWGTPLSDPASHKSYRPLTTLTF 76
Y SL G+ VHDD+ A+ N DV G + +FTNDFWG +++ SHKSYRPL LTF
Sbjct: 41 YGRSLQGEFVHDDVWAIVNNPDVRPGAPLRWGIFTNDFWGKGMAENTSHKSYRPLCVLTF 100
Query: 77 R 77
+
Sbjct: 101 K 101
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 23 GGDLVHDDIVALARNQDVLG-GTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTFR---T 78
G V DD VA+ +N+DV T+ +FT+DFWG L SHKS+RPLTTL F
Sbjct: 34 GAKFVFDDTVAIVKNRDVNSLPTNWTAIFTHDFWGASLLSSDSHKSFRPLTTLMFHCEYA 93
Query: 79 VLGISS 84
+LG+S+
Sbjct: 94 LLGLSA 99
>sp|Q20144|TMTC1_CAEEL Transmembrane and TPR repeat-containing protein F38B6.6
OS=Caenorhabditis elegans GN=F38B6.6 PE=3 SV=2
Length = 690
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 18 YFNSLGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTF 76
Y + LGGD V DD ++ N V G + Q+F+ DFWG +S SHKSYRP+TT TF
Sbjct: 43 YLSCLGGDFVFDDAESIVNNPIVNGKDPLLQIFSRDFWGRSISSSNSHKSYRPVTTFTF 101
>sp|Q8A521|ATKC_BACTN Potassium-transporting ATPase C chain OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=kdpC PE=3 SV=1
Length = 189
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Query: 40 VLGGTSVGQMFTND--FWGTP 58
V+G +VGQMFT D FWG P
Sbjct: 49 VVGAANVGQMFTKDIYFWGRP 69
>sp|Q9UK12|ZN222_HUMAN Zinc finger protein 222 OS=Homo sapiens GN=ZNF222 PE=2 SV=2
Length = 451
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 46 VGQMFTNDFWGTPLSDPASHKSYRPLTTLTFRTVLGISSCVSSRLRTI------------ 93
V +FT + G L DPA K YR + FR +L + + + + T+
Sbjct: 13 VAVIFTEEELG--LLDPAQRKLYRDVMLENFRNLLSVGGKIQTEMETVPEAGTHEEFSCK 70
Query: 94 -LWENFLSDTEHAK 106
+WE SD ++
Sbjct: 71 QIWEQIASDLTRSQ 84
>sp|A6L5D0|ATKC_BACV8 Potassium-transporting ATPase C chain OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=kdpC PE=3
SV=1
Length = 189
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 6 VYSSVVLIAVGVYFNSLGG-DLVHDDIVALARNQDVLGGTSVGQMFTND--FWGTP 58
V+ SV I V F G + + ++V L N V+G +VGQ FT D FWG P
Sbjct: 16 VFFSVCYILVLWIFAQFAGPNSGNAEVVEL--NGKVVGAANVGQSFTEDIYFWGRP 69
>sp|Q9VVI3|NEDD4_DROME E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster
GN=Nedd4 PE=1 SV=2
Length = 1007
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 41 LGGTSVGQMFTNDFWGTPLSDPASHKSYRPL 71
L G++ QMFT + WGTP + P +H + L
Sbjct: 948 LYGSNGPQMFTIEKWGTPNNFPRAHTCFNRL 978
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,594,647
Number of Sequences: 539616
Number of extensions: 1613761
Number of successful extensions: 3114
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3096
Number of HSP's gapped (non-prelim): 19
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)