Query psy16987
Match_columns 110
No_of_seqs 105 out of 232
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 18:48:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3356|consensus 90.9 0.069 1.5E-06 39.0 0.0 48 22-90 43-92 (147)
2 PF11803 UXS1_N: UDP-glucurona 39.6 12 0.00025 25.2 0.3 38 4-43 15-52 (78)
3 PF15240 Pro-rich: Proline-ric 35.6 29 0.00063 26.6 2.0 31 6-36 1-33 (179)
4 PRK14759 potassium-transportin 18.6 1.2E+02 0.0027 16.7 2.0 19 1-19 1-19 (29)
5 PRK14750 kdpF potassium-transp 17.2 1.4E+02 0.0031 16.5 2.0 15 5-19 8-22 (29)
6 PF05034 MAAL_N: Methylasparta 15.7 46 0.001 25.1 -0.2 18 24-41 13-30 (159)
7 PF12829 Mhr1: Transcriptional 15.6 28 0.00061 23.9 -1.3 52 17-82 7-63 (91)
8 PF00976 ACTH_domain: Corticot 14.1 97 0.0021 18.2 0.9 16 54-74 8-23 (39)
9 PHA03165 hypothetical protein; 13.1 1.4E+02 0.0029 18.5 1.4 21 4-24 22-42 (57)
10 COG4807 Uncharacterized protei 12.8 68 0.0015 23.9 -0.0 47 28-86 101-148 (155)
No 1
>KOG3356|consensus
Probab=90.89 E-value=0.069 Score=38.96 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=36.8
Q ss_pred CCCCeeeecccccccCccccCCCChhhhhhcccCCCCCCCCCCCCCCchhhHHHHHHH--HhhcCCCcccc
Q psy16987 22 LGGDLVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTFRTV--LGISSCVSSRL 90 (110)
Q Consensus 22 l~~~FVFDD~~aIv~N~~I~~~~~~~~lf~~dfWG~~~~~~~sh~syRPLt~LSFaln--y~l~Gl~~~~~ 90 (110)
..++|+|| .||+-|.|-+.+ +-|++.||++.++.|.| |-+.||++.-+
T Consensus 43 v~~g~iyd---vivepp~igs~~------------------d~~g~~rpv~fla~rvngqyimeglas~fl 92 (147)
T KOG3356|consen 43 VTGGIIYD---VIVEPPSIGSMT------------------DEHGHQRPVAFLAGRVNGQYIMEGLASSFL 92 (147)
T ss_pred hcccEEEE---EEecCCCCCccc------------------ccCCcCcceEEEeccccceeeehhhcccce
Confidence 46899999 578888776522 23678999999999998 77888876544
No 2
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=39.59 E-value=12 Score=25.21 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHhhccCCCCeeeecccccccCccccCC
Q psy16987 4 RGVYSSVVLIAVGVYFNSLGGDLVHDDIVALARNQDVLGG 43 (110)
Q Consensus 4 ~~~~~~l~~~~~l~Y~Nsl~~~FVFDD~~aIv~N~~I~~~ 43 (110)
|.+.=++..+++++|.-|+.|.|+ ....|.+|.+++-.
T Consensus 15 Rr~mkll~~lal~ayiasvwg~~v--nmrsIQEnGe~Kie 52 (78)
T PF11803_consen 15 RRRMKLLLGLALIAYIASVWGNYV--NMRSIQENGELKIE 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--CHHHHHhccchhHH
Confidence 456667788999999999999876 56999999999854
No 3
>PF15240 Pro-rich: Proline-rich
Probab=35.57 E-value=29 Score=26.63 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhcc--CCCCeeeeccccccc
Q psy16987 6 VYSSVVLIAVGVYFNS--LGGDLVHDDIVALAR 36 (110)
Q Consensus 6 ~~~~l~~~~~l~Y~Ns--l~~~FVFDD~~aIv~ 36 (110)
|||||+.+++|+.+.+ +..+..+.|...+..
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~~e~~~~~~~ 33 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVSQEESPSVIS 33 (179)
T ss_pred ChhHHHHHHHHHhhhccccccccccccCccccc
Confidence 5677776777776655 677777777766655
No 4
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=18.57 E-value=1.2e+02 Score=16.68 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=13.8
Q ss_pred CCcchHHHHHHHHHHHHhh
Q psy16987 1 MTGRGVYSSVVLIAVGVYF 19 (110)
Q Consensus 1 ~~~~~~~~~l~~~~~l~Y~ 19 (110)
||=.-++..++.+++++|.
T Consensus 1 m~~~~~l~~~va~~L~vYL 19 (29)
T PRK14759 1 MILDYSLAGAVSLGLLIYL 19 (29)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 5556677777788888885
No 5
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=17.16 E-value=1.4e+02 Score=16.45 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHhh
Q psy16987 5 GVYSSVVLIAVGVYF 19 (110)
Q Consensus 5 ~~~~~l~~~~~l~Y~ 19 (110)
|..+++.+++-++|+
T Consensus 8 g~llv~lLl~YLvYA 22 (29)
T PRK14750 8 GALLVLLLLGYLVYA 22 (29)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777778888885
No 6
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=15.70 E-value=46 Score=25.13 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=12.6
Q ss_pred CCeeeecccccccCcccc
Q psy16987 24 GDLVHDDIVALARNQDVL 41 (110)
Q Consensus 24 ~~FVFDD~~aIv~N~~I~ 41 (110)
++|-|||..+|..-+.-.
T Consensus 13 sgFffDDQ~AIk~GA~~D 30 (159)
T PF05034_consen 13 SGFFFDDQRAIKAGAKQD 30 (159)
T ss_dssp ECCEEE-HHHHHCC-EEE
T ss_pred cccccchHHHHhcCcccC
Confidence 578899999998766544
No 7
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=15.62 E-value=28 Score=23.89 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=34.4
Q ss_pred HhhccCCCCeeeecccccccCccccC-----CCChhhhhhcccCCCCCCCCCCCCCCchhhHHHHHHHHhh
Q psy16987 17 VYFNSLGGDLVHDDIVALARNQDVLG-----GTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTFRTVLGI 82 (110)
Q Consensus 17 ~Y~Nsl~~~FVFDD~~aIv~N~~I~~-----~~~~~~lf~~dfWG~~~~~~~sh~syRPLt~LSFalny~l 82 (110)
+|-|-.+|.=+|-=.+.+.+|...+. +.+-+.-...|+ |||+++..|- +|..
T Consensus 7 vf~nl~t~QVlYS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~-------------W~pm~vv~f~-~~~~ 63 (91)
T PF12829_consen 7 VFRNLETNQVLYSQTPNLDNNQILKQFPFPGKKNKPPSLRKDY-------------WRPMCVVNFP-NYEV 63 (91)
T ss_pred EEeecccCCEEEecCcccChhHHHHhccCCCcccCCchhcccc-------------ceEeEEEECC-ChHH
Confidence 56777788888888888877776642 233333444454 5888888877 5554
No 8
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=14.09 E-value=97 Score=18.20 Aligned_cols=16 Identities=31% Similarity=0.889 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCCCCchhhHH
Q psy16987 54 FWGTPLSDPASHKSYRPLTTL 74 (110)
Q Consensus 54 fWG~~~~~~~sh~syRPLt~L 74 (110)
=||+|+. +-.||+.+.
T Consensus 8 rwgkp~g-----~KRRPvKVy 23 (39)
T PF00976_consen 8 RWGKPVG-----RKRRPVKVY 23 (39)
T ss_pred eccCCCC-----cccCcceeC
Confidence 4999864 458888654
No 9
>PHA03165 hypothetical protein; Provisional
Probab=13.10 E-value=1.4e+02 Score=18.53 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHhhccCCC
Q psy16987 4 RGVYSSVVLIAVGVYFNSLGG 24 (110)
Q Consensus 4 ~~~~~~l~~~~~l~Y~Nsl~~ 24 (110)
..++++-.++++++|+.-+++
T Consensus 22 tyilvvafvlaflvysdflsn 42 (57)
T PHA03165 22 TYILVVAFVLAFLVYSDFLSN 42 (57)
T ss_pred eehhHHHHHHHHHHHHHHHhc
Confidence 345555566899999876543
No 10
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=12.80 E-value=68 Score=23.95 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=30.4
Q ss_pred eecccccccCccccC-CCChhhhhhcccCCCCCCCCCCCCCCchhhHHHHHHHHhhcCCC
Q psy16987 28 HDDIVALARNQDVLG-GTSVGQMFTNDFWGTPLSDPASHKSYRPLTTLTFRTVLGISSCV 86 (110)
Q Consensus 28 FDD~~aIv~N~~I~~-~~~~~~lf~~dfWG~~~~~~~sh~syRPLt~LSFalny~l~Gl~ 86 (110)
=||..+|.+-.+++- ..-++++|. ...||.|||-.-=- +-|.+-||.
T Consensus 101 ~~Dm~~I~~~~~f~vS~pElsAlfR----------~~~hkN~r~CGDq~--lR~FLkGLt 148 (155)
T COG4807 101 TDDMLAILTEQQFRVSMPELSALFR----------APDHKNFRECGDQF--LRYFLKGLT 148 (155)
T ss_pred cchHHHHHhccCcccccHHHHHHHh----------CCCccchhhhHHHH--HHHHHHHHH
Confidence 478888888888774 345677775 35689999976422 234445544
Done!