Query psy16987
Match_columns 110
No_of_seqs 105 out of 232
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 18:49:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqy_A Beta-1,3-glucan-binding 11.4 88 0.003 20.7 1.2 20 23-42 57-76 (106)
2 2koe_A Human cannabinoid recep 9.8 82 0.0028 15.9 0.5 17 12-28 5-21 (40)
3 3ie4_A GRAM-negative binding p 9.4 1.1E+02 0.0039 20.2 1.2 20 22-41 55-74 (107)
4 2kha_A Beta-1,3-glucan-binding 8.5 1.3E+02 0.0045 20.7 1.2 19 23-41 66-84 (130)
5 3bts_E Regulatory protein GAL4 5.7 99 0.0034 15.8 -0.4 8 25-32 13-20 (26)
6 1ttw_B YSCM2; chaperone, type 5.1 2.3E+02 0.0079 16.7 0.9 9 101-109 22-30 (56)
7 3t5v_A Nuclear mRNA export pro 5.1 5.2E+02 0.018 19.8 3.2 38 67-107 7-44 (316)
8 4f67_A UPF0176 protein LPG2838 5.0 1.6E+02 0.0055 22.1 0.2 14 24-37 233-246 (265)
9 1igd_A Protein G; immunoglobul 5.0 2.7E+02 0.0092 16.9 1.2 16 17-32 39-54 (61)
10 1kko_A 3-methylaspartate ammon 4.7 1.5E+02 0.0051 23.4 -0.2 17 23-39 12-28 (413)
No 1
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=11.39 E-value=88 Score=20.67 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=16.8
Q ss_pred CCCeeeecccccccCccccC
Q psy16987 23 GGDLVHDDIVALARNQDVLG 42 (110)
Q Consensus 23 ~~~FVFDD~~aIv~N~~I~~ 42 (110)
.|.|+|+|..+.+++.|+--
T Consensus 57 ~GrW~~~d~~~~lk~GD~i~ 76 (106)
T 3aqy_A 57 EGRWTFRDRNVKLKLGDKIY 76 (106)
T ss_dssp TTEEEEEECSCCCCTTCEEE
T ss_pred CCEEEEECCceEeCCCCEEE
Confidence 67899999999999888753
No 2
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=9.80 E-value=82 Score=15.94 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHHHHHhhccCCCCeee
Q psy16987 12 LIAVGVYFNSLGGDLVH 28 (110)
Q Consensus 12 ~~~~l~Y~Nsl~~~FVF 28 (110)
+...+.|.|+.-++++|
T Consensus 5 ~~~~l~~~ns~lNPiIY 21 (40)
T 2koe_A 5 FASMLCLLNSTVNPIIY 21 (40)
T ss_dssp HHHHHHHHHHHSSTTTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34557788887777665
No 3
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=9.39 E-value=1.1e+02 Score=20.18 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.0
Q ss_pred CCCCeeeecccccccCcccc
Q psy16987 22 LGGDLVHDDIVALARNQDVL 41 (110)
Q Consensus 22 l~~~FVFDD~~aIv~N~~I~ 41 (110)
-.|.|+|+|..+.+++.|+-
T Consensus 55 ~~GrW~~~d~~~~lk~GD~I 74 (107)
T 3ie4_A 55 KNGRWTFRDRITALKPGDTL 74 (107)
T ss_dssp BTTEEEEEESSCCCCTTCEE
T ss_pred cCCEEEEECCCceeCCCCEE
Confidence 46889999999999998865
No 4
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=8.49 E-value=1.3e+02 Score=20.65 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCCeeeecccccccCcccc
Q psy16987 23 GGDLVHDDIVALARNQDVL 41 (110)
Q Consensus 23 ~~~FVFDD~~aIv~N~~I~ 41 (110)
.|.|+|+|..+.+++.|+-
T Consensus 66 ~GrW~~~d~~~~Lk~GD~I 84 (130)
T 2kha_A 66 EGRWTFRDRNAKLKLGDKI 84 (130)
T ss_dssp SSEEEEEETTCCCCTTCEE
T ss_pred CCEEEEECCceeeCCCCEE
Confidence 6789999999999988875
No 5
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=5.73 E-value=99 Score=15.80 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=5.2
Q ss_pred Ceeeeccc
Q psy16987 25 DLVHDDIV 32 (110)
Q Consensus 25 ~FVFDD~~ 32 (110)
.|+|||..
T Consensus 13 NylFdd~d 20 (26)
T 3bts_E 13 NYLFDDED 20 (26)
T ss_pred HHhcCccc
Confidence 36788753
No 6
>1ttw_B YSCM2; chaperone, type III secretion; 2.38A {Yersinia pestis}
Probab=5.08 E-value=2.3e+02 Score=16.75 Aligned_cols=9 Identities=44% Similarity=0.516 Sum_probs=6.5
Q ss_pred HHHHHhhhc
Q psy16987 101 DTEHAKRCV 109 (110)
Q Consensus 101 ~~~ha~~~~ 109 (110)
+++|++|.+
T Consensus 22 VLEH~KNT~ 30 (56)
T 1ttw_B 22 VLEHAKNTI 30 (56)
T ss_pred HHHHHHhhh
Confidence 667888765
No 7
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=5.07 E-value=5.2e+02 Score=19.82 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCchhhHHHHHHHHhhcCCCcccccccchhhhhhHHHHHhh
Q psy16987 67 SYRPLTTLTFRTVLGISSCVSSRLRTILWENFLSDTEHAKR 107 (110)
Q Consensus 67 syRPLt~LSFalny~l~Gl~~~~~~~p~~~h~~n~~~ha~~ 107 (110)
.-||..+|.=.++|-+.-+... .|-+|+|..+.+-+.|
T Consensus 7 ~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIR 44 (316)
T 3t5v_A 7 DVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIR 44 (316)
T ss_dssp CCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhc
Confidence 4799999999999998665532 4788999988876655
No 8
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=5.02 E-value=1.6e+02 Score=22.08 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=10.9
Q ss_pred CCeeeecccccccC
Q psy16987 24 GDLVHDDIVALARN 37 (110)
Q Consensus 24 ~~FVFDD~~aIv~N 37 (110)
.-||||+..++-.+
T Consensus 233 ~~fVFD~R~~~~~~ 246 (265)
T 4f67_A 233 KCFVFDDRVAVDQK 246 (265)
T ss_dssp CEECSSTTCEECTT
T ss_pred cceeEcCccccccC
Confidence 45999999988553
No 9
>1igd_A Protein G; immunoglobulin binding protein; 1.10A {Streptococcus SP} SCOP: d.15.7.1 PDB: 1igc_A 2igd_A 2igh_A 1qkz_A 2igg_A 1uwx_A 3mp9_A
Probab=4.99 E-value=2.7e+02 Score=16.92 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=12.8
Q ss_pred HhhccCCCCeeeeccc
Q psy16987 17 VYFNSLGGDLVHDDIV 32 (110)
Q Consensus 17 ~Y~Nsl~~~FVFDD~~ 32 (110)
+-.|++.|.+.|||..
T Consensus 39 aN~Ngvdgew~yd~at 54 (61)
T 1igd_A 39 ANDNGVDGVWTYDDAT 54 (61)
T ss_dssp HHHTTCCCEEEEETTT
T ss_pred hhcCCCCceEeecCce
Confidence 4467899999999964
No 10
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=4.73 E-value=1.5e+02 Score=23.37 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCCeeeecccccccCcc
Q psy16987 23 GGDLVHDDIVALARNQD 39 (110)
Q Consensus 23 ~~~FVFDD~~aIv~N~~ 39 (110)
.++|-|||..+|..-..
T Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (413)
T 1kko_A 12 YSSFYFDDQQAIKNGAG 28 (413)
T ss_dssp EEEEEEECHHHHHTTCC
T ss_pred ccCCccCchhHHhcCCC
Confidence 46899999999988443
Done!