Query psy16987
Match_columns 110
No_of_seqs 105 out of 232
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 18:49:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcza2 d.54.1.1 (A:1-160) bet 19.6 13 0.00093 25.3 0.4 17 24-40 13-29 (160)
2 d1kkoa2 d.54.1.1 (A:1-160) bet 17.4 13 0.00093 25.3 -0.0 18 24-41 13-30 (160)
3 d1a8da2 b.42.4.2 (A:248-452) T 13.0 25 0.0018 24.7 0.5 11 51-61 4-14 (205)
4 d3btaa2 b.42.4.2 (A:1079-1295) 12.9 25 0.0018 24.9 0.5 11 51-61 18-28 (217)
5 d2gmga1 a.4.5.82 (A:1-105) Hyp 12.4 25 0.0018 22.2 0.4 11 21-31 70-80 (105)
6 d1epwa2 b.42.4.2 (A:1080-1290) 11.0 31 0.0023 24.2 0.5 9 52-60 5-13 (211)
7 d1m56d_ f.23.8.1 (D:) Bacteria 8.1 66 0.0048 17.0 1.1 17 4-20 25-41 (42)
8 d5ruba1 c.1.14.1 (A:138-457) R 7.3 1.2E+02 0.0084 21.8 2.5 26 13-40 39-64 (320)
9 d1qled_ f.23.8.1 (D:) Bacteria 6.9 82 0.006 16.6 1.1 17 4-20 26-42 (43)
10 d1qc7a_ a.118.14.1 (A:) FliG { 6.6 48 0.0035 19.8 -0.1 11 26-36 2-12 (101)
No 1
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=19.57 E-value=13 Score=25.34 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=13.9
Q ss_pred CCeeeecccccccCccc
Q psy16987 24 GDLVHDDIVALARNQDV 40 (110)
Q Consensus 24 ~~FVFDD~~aIv~N~~I 40 (110)
++|-|||..+|...+.=
T Consensus 13 sGfffdDQ~AIk~GA~~ 29 (160)
T d1kcza2 13 TGFYFDDQRAIKKGAGH 29 (160)
T ss_dssp CSSEEECHHHHHTTCEE
T ss_pred ccceechHHHHHcCccc
Confidence 57889999999887653
No 2
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=17.44 E-value=13 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=14.5
Q ss_pred CCeeeecccccccCcccc
Q psy16987 24 GDLVHDDIVALARNQDVL 41 (110)
Q Consensus 24 ~~FVFDD~~aIv~N~~I~ 41 (110)
++|-|||..+|...+.=.
T Consensus 13 sGf~fdDQ~AIk~GA~~D 30 (160)
T d1kkoa2 13 SSFYFDDQQAIKNGAGHD 30 (160)
T ss_dssp EEEEEECHHHHHTTCCEE
T ss_pred ccceechHHHHHcCcccC
Confidence 578999999998876543
No 3
>d1a8da2 b.42.4.2 (A:248-452) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}
Probab=12.98 E-value=25 Score=24.67 Aligned_cols=11 Identities=55% Similarity=1.229 Sum_probs=8.3
Q ss_pred hcccCCCCCCC
Q psy16987 51 TNDFWGTPLSD 61 (110)
Q Consensus 51 ~~dfWG~~~~~ 61 (110)
-.||||.++.-
T Consensus 4 LKDfWGN~L~Y 14 (205)
T d1a8da2 4 LRDFWGNPLRY 14 (205)
T ss_dssp CBCTTSSBCBT
T ss_pred ehhccCCcccc
Confidence 36999998753
No 4
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
Probab=12.93 E-value=25 Score=24.91 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=8.4
Q ss_pred hcccCCCCCCC
Q psy16987 51 TNDFWGTPLSD 61 (110)
Q Consensus 51 ~~dfWG~~~~~ 61 (110)
-.||||.|+.-
T Consensus 18 LKDfWGN~L~Y 28 (217)
T d3btaa2 18 LKDFWGDYLQY 28 (217)
T ss_dssp CBCTTSSBCBS
T ss_pred HHHhcCCcccc
Confidence 36999998753
No 5
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=12.45 E-value=25 Score=22.17 Aligned_cols=11 Identities=9% Similarity=-0.067 Sum_probs=8.7
Q ss_pred cCCCCeeeecc
Q psy16987 21 SLGGDLVHDDI 31 (110)
Q Consensus 21 sl~~~FVFDD~ 31 (110)
...+||||||.
T Consensus 70 CrkCGfvFr~~ 80 (105)
T d2gmga1 70 CRKCGFVFKAE 80 (105)
T ss_dssp BTTTCCBCCCC
T ss_pred hhhcCCeeccc
Confidence 46899999873
No 6
>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}
Probab=10.97 E-value=31 Score=24.25 Aligned_cols=9 Identities=67% Similarity=1.627 Sum_probs=7.2
Q ss_pred cccCCCCCC
Q psy16987 52 NDFWGTPLS 60 (110)
Q Consensus 52 ~dfWG~~~~ 60 (110)
.||||.++.
T Consensus 5 KDfWGN~L~ 13 (211)
T d1epwa2 5 KDFWGNPLM 13 (211)
T ss_dssp BCTTSSBCE
T ss_pred hhhcCCccc
Confidence 589998874
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.13 E-value=66 Score=16.97 Aligned_cols=17 Identities=12% Similarity=-0.062 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHHhhc
Q psy16987 4 RGVYSSVVLIAVGVYFN 20 (110)
Q Consensus 4 ~~~~~~l~~~~~l~Y~N 20 (110)
|...++|+++.+++-.|
T Consensus 25 ~~~i~~i~~liflAi~n 41 (42)
T d1m56d_ 25 WAAVVIVAALIFLALAN 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44555555555555444
No 8
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.26 E-value=1.2e+02 Score=21.77 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHhhccCCCCeeeecccccccCccc
Q psy16987 13 IAVGVYFNSLGGDLVHDDIVALARNQDV 40 (110)
Q Consensus 13 ~~~l~Y~Nsl~~~FVFDD~~aIv~N~~I 40 (110)
++-++|--...|+|+-||. ++.||.-
T Consensus 39 ~a~~~~e~~~GGD~IKDDE--~lad~~~ 64 (320)
T d5ruba1 39 FAEACHAFWLGGDFIKNDE--PQGNQPF 64 (320)
T ss_dssp HHHHHHHHTTTCSEEECCT--TCSCBTT
T ss_pred HHHHHHHHHhcCccccCCC--CCCCCCC
Confidence 4567888888999999994 5555443
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.93 E-value=82 Score=16.65 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHhhc
Q psy16987 4 RGVYSSVVLIAVGVYFN 20 (110)
Q Consensus 4 ~~~~~~l~~~~~l~Y~N 20 (110)
|...++|+++.+++-.|
T Consensus 26 ~~~i~~i~~liflAi~n 42 (43)
T d1qled_ 26 WVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455555555555444
No 10
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=6.58 E-value=48 Score=19.84 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=7.9
Q ss_pred eeeeccccccc
Q psy16987 26 LVHDDIVALAR 36 (110)
Q Consensus 26 FVFDD~~aIv~ 36 (110)
|.|||...+-+
T Consensus 2 FtFddl~~l~~ 12 (101)
T d1qc7a_ 2 FVFEDILKLDD 12 (101)
T ss_dssp CCGGGGGGBCH
T ss_pred cchhHhhcCCH
Confidence 78999876533
Done!