RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16987
         (110 letters)



>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
           complex, chromatin remodeling nucleosome remodeling;
           3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
          Length = 624

 Score = 26.8 bits (58), Expect = 1.5
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 47  GQMFTNDFWGTPLSDPASHKSYR 69
             +F  +    PL++P S + Y+
Sbjct: 385 VPLFEGELPDQPLANPFSERLYK 407


>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
           binding protein, PURP structural genomics, protein
           structure initiative; HET: ATP; 2.50A {Thermococcus
           kodakarensis} SCOP: c.30.1.8 d.142.1.9
          Length = 320

 Score = 25.7 bits (56), Expect = 4.1
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 26  LVHDDIVALARNQDVLGGTSVGQMFTNDFWGTPLS 60
                  A+     + GG++    ++  +WG  LS
Sbjct: 255 AYDGSFKAIGIASRIDGGSNADHWYSELYWGERLS 289


>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
           PSI, protein STRU initiative; 2.66A {Mycobacterium
           tuberculosis} SCOP: c.2.1.1
          Length = 198

 Score = 24.8 bits (55), Expect = 6.5
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 9/34 (26%)

Query: 3   GRGVYSSVVLIAVGVYFNSLGGDLVHDDIVALAR 36
           G GV   VVL       NSL G+ +   +  LA 
Sbjct: 105 GYGV--DVVL-------NSLAGEAIQRGVQILAP 129


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,665,074
Number of extensions: 86026
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 6
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)