RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16987
         (110 letters)



>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Thermococcus
           kodakaraensis [TaxId: 311400]}
          Length = 213

 Score = 24.3 bits (53), Expect = 3.2
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 6/38 (15%)

Query: 26  LVHDDIVAL---ARNQDVLGGTSVGQMFTNDFWGTPLS 60
                  A+   +R   + GG++    ++  +WG  LS
Sbjct: 156 AYDGSFKAIGIASR---IDGGSNADHWYSELYWGERLS 190


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,499
Number of extensions: 15059
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)