BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16988
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1
Length = 324
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 3/64 (4%)
Query: 19 GDVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGG 75
GDVE+G S Q + + +S + +QA TLTFLAEWGDRSQLTTI+LAARED YGV +GG
Sbjct: 214 GDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGG 273
Query: 76 VLGH 79
+GH
Sbjct: 274 TVGH 277
>sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1
Length = 323
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 3/63 (4%)
Query: 20 DVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGV 76
DVE+G S Q + + +S + +QA TLTFLAEWGDRSQLTTI+LAARED YGV +GG
Sbjct: 214 DVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGT 273
Query: 77 LGH 79
+GH
Sbjct: 274 VGH 276
>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2
Length = 323
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 3/63 (4%)
Query: 20 DVESGKSY---QAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGV 76
DVE+G S Q + + +S + +QA TLTFLAEWGDRSQLTTI+LAARED YGV +GG
Sbjct: 214 DVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGT 273
Query: 77 LGH 79
+GH
Sbjct: 274 VGH 276
>sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1
Length = 287
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 33 SLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNII 88
+L S + I+AF LTF++EWGDRSQ+ TI +AA ++VYGV +G +GH +I
Sbjct: 197 TLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVI 252
>sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll0615 PE=3 SV=1
Length = 206
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 34/42 (80%)
Query: 38 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+V+++F LTF+AEWGDR+Q+ TI LAA + +GV+ G +LGH
Sbjct: 121 IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGH 162
>sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100
PE=2 SV=1
Length = 232
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 32 ISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+ S + I+AF++TF EWGD+SQ+ TI LAA E+ +GV LGGVL
Sbjct: 138 LQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGVLAQ 185
>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500
PE=2 SV=1
Length = 279
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 38 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNII 88
+ ++AF LTFLAEWGDRSQ+ TI LA ++ GV +G LGH +I
Sbjct: 194 IFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVI 244
>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3
SV=1
Length = 279
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 38 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNII 88
+ ++AF LTFLAEWGDRSQ+ TI LA ++ GV +G LGH +I
Sbjct: 194 IFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVI 244
>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1
Length = 230
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 22 ESGKSYQAQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
E+ K +A S + ++AF++ F EWGD+SQL TI LAA E+ +GV LGGV+
Sbjct: 128 ENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGVVAQ 185
>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500
PE=2 SV=1
Length = 282
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 38 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+ +++F LTFLAEWGDRSQ+ TI LA ++ GV +G LGH
Sbjct: 197 IFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGH 238
>sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3
SV=1
Length = 281
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 38 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+ +++F LTFLAEWGDRSQ+ TI LA ++ GV +G LGH
Sbjct: 196 IFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGH 237
>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1
Length = 293
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 38 VVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNIIPSGLNPPR 96
+ +++F LTFLAEWGDRSQ+ TI LA ++ GV +G +GH ++ + R
Sbjct: 208 IFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASR 266
>sp|Q9P7Q0|YLY5_SCHPO GDT1-like protein C186.05c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC186.05c PE=3 SV=1
Length = 262
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 35 LSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNII 88
SR I+AF L F++E GDRSQ+ TI+++A+E V V +G +GH +I
Sbjct: 175 FSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVI 228
>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1
Length = 228
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 33 SLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+ S + ++AF++ F EWGD+SQL TI LAA E+ GV LGG++
Sbjct: 137 AFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVAQ 183
>sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os11g0544500 PE=2 SV=1
Length = 347
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 17 LTGDVESGKSYQAQTI-------SLLS--RVVIQAFTLTFLAEWGDRSQLTTIILAARED 67
L G+ ESG+ +A+ + L S V+ ++F+L F AEWGDRS L TI L A +
Sbjct: 233 LQGNSESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQS 292
Query: 68 VYGVTLGGVLGH 79
+GV G + GH
Sbjct: 293 PFGVASGAIAGH 304
>sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana
GN=At4g13590 PE=1 SV=2
Length = 359
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 37 RVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
++ ++F+L F AEWGDRS L T+ L A + GV G + GH
Sbjct: 274 EILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGH 316
>sp|P38301|GDT1_YEAST GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1
Length = 280
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 34 LLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNIIPSGLN 93
+ S V +Q F + FL E GDRSQ++ I +A D + V G V+GH ++ L
Sbjct: 188 MFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLL 247
Query: 94 PPRAGIEP 101
R I
Sbjct: 248 ATRISIRT 255
>sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica
GN=OsI_00941 PE=3 SV=2
Length = 341
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 39 VIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+ F L F+AEWGD+S +TI LAA GV G + GH
Sbjct: 256 IASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAGSLAGH 296
>sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0221700 PE=3 SV=2
Length = 341
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 39 VIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGH 79
+ F L F+AEWGD+S +TI LAA GV G + GH
Sbjct: 256 IASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAGSLAGH 296
>sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana
GN=At1g64150 PE=2 SV=2
Length = 370
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 36 SRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGV 71
+ +I F L F+AEWGD+S +TI LAA GV
Sbjct: 283 ANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGV 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,861,267
Number of Sequences: 539616
Number of extensions: 1267352
Number of successful extensions: 3321
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3291
Number of HSP's gapped (non-prelim): 32
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)