Query psy16988
Match_columns 103
No_of_seqs 101 out of 1011
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:49:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881|consensus 99.9 2.3E-22 5E-27 160.1 6.7 72 29-100 199-270 (294)
2 PF01169 UPF0016: Uncharacteri 99.9 6.5E-23 1.4E-27 136.0 1.8 62 39-100 1-64 (78)
3 COG2119 Predicted membrane pro 99.8 2E-20 4.4E-25 142.3 5.0 64 37-100 100-164 (190)
4 COG2119 Predicted membrane pro 99.7 4.2E-17 9.2E-22 124.2 4.5 65 37-101 2-66 (190)
5 KOG2881|consensus 99.4 2.4E-13 5.1E-18 108.8 2.6 67 33-99 63-129 (294)
6 COG4280 Predicted membrane pro 69.5 6.5 0.00014 31.3 3.5 46 55-101 18-65 (236)
7 COG1238 Predicted membrane pro 58.5 11 0.00025 28.0 2.9 62 37-99 21-82 (161)
8 PRK09430 djlA Dna-J like membr 32.3 9.8 0.00021 30.0 -1.0 27 68-94 3-29 (267)
9 PF11286 DUF3087: Protein of u 30.9 2.1E+02 0.0045 21.7 5.9 54 29-86 12-67 (165)
10 COG3932 Uncharacterized ABC-ty 26.1 1.1E+02 0.0023 24.3 3.7 53 45-97 30-89 (209)
11 COG0586 DedA Uncharacterized m 25.8 53 0.0011 24.7 2.0 47 52-98 38-86 (208)
12 PF06072 Herpes_US9: Alphaherp 23.9 18 0.00039 23.3 -0.7 26 69-94 32-57 (60)
13 PRK00665 petG cytochrome b6-f 23.7 25 0.00055 20.6 -0.1 26 71-96 5-30 (37)
14 CHL00008 petG cytochrome b6/f 22.2 27 0.00059 20.5 -0.1 25 71-95 5-29 (37)
No 1
>KOG2881|consensus
Probab=99.87 E-value=2.3e-22 Score=160.12 Aligned_cols=72 Identities=40% Similarity=0.681 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHhhccCccEEeehHHHHHHHhhhHHHhhcccCCCCCCCC
Q psy16988 29 AQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAGIE 100 (103)
Q Consensus 29 ~~~~~~~~~~~~~sf~liflAElGDKTQL~ti~LA~r~~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip~~ 100 (103)
+....+++++|+++|.++|++||||||||+|++||++.|+++|++|+.+||.+||.+||+.|++++++|+++
T Consensus 199 ~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~r 270 (294)
T KOG2881|consen 199 RKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVR 270 (294)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeE
Confidence 456677899999999999999999999999999999999999999999999999999999999999999875
No 2
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.86 E-value=6.5e-23 Score=135.98 Aligned_cols=62 Identities=32% Similarity=0.428 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHhhcc--CccEEeehHHHHHHHhhhHHHhhcccCCCCCCCC
Q psy16988 39 VIQAFTLTFLAEWGDRSQLTTIILAARE--DVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAGIE 100 (103)
Q Consensus 39 ~~~sf~liflAElGDKTQL~ti~LA~r~--~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip~~ 100 (103)
|+++|.++|++|||||||+++++||+|| +||.|++|+.+|+++++.+++++|+++.+++|++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~ 64 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPER 64 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 5789999999999999999999999998 9999999999999999999999999999999975
No 3
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.81 E-value=2e-20 Score=142.29 Aligned_cols=64 Identities=30% Similarity=0.370 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHhhccCc-cEEeehHHHHHHHhhhHHHhhcccCCCCCCCC
Q psy16988 37 RVVIQAFTLTFLAEWGDRSQLTTIILAAREDV-YGVTLGGVLGHPAVPRTNIIPSGLNPPRAGIE 100 (103)
Q Consensus 37 ~~~~~sf~liflAElGDKTQL~ti~LA~r~~~-~~V~~G~~la~~l~t~lav~~G~~l~~~ip~~ 100 (103)
.+|.++|+++|++|||||||++|++||++++. |.|++|+.+||++|+.++|++|+++++|+|++
T Consensus 100 ~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r 164 (190)
T COG2119 100 GVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPER 164 (190)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHH
Confidence 58999999999999999999999999999655 99999999999999999999999999999986
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.67 E-value=4.2e-17 Score=124.18 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHhhccCccEEeehHHHHHHHhhhHHHhhcccCCCCCCCCC
Q psy16988 37 RVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAGIEP 101 (103)
Q Consensus 37 ~~~~~sf~liflAElGDKTQL~ti~LA~r~~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip~~~ 101 (103)
+.+..+..++++||+||||||+++.||+||+||+|+.|+..+.+.+|.+++++|++.+..+|.++
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~ 66 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERP 66 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence 57889999999999999999999999999999999999999999999999999999999998765
No 5
>KOG2881|consensus
Probab=99.36 E-value=2.4e-13 Score=108.81 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHhhccCccEEeehHHHHHHHhhhHHHhhcccCCCCCCC
Q psy16988 33 SLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAGI 99 (103)
Q Consensus 33 ~~~~~~~~~sf~liflAElGDKTQL~ti~LA~r~~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip~ 99 (103)
..+...|..|+.++|++|+||||++++..||+||++..||.|+..|++++|.+++.+|+..++.+|-
T Consensus 63 ~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr 129 (294)
T KOG2881|consen 63 SSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPR 129 (294)
T ss_pred HHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchH
Confidence 4466899999999999999999999999999999999999999999999999999999999888874
No 6
>COG4280 Predicted membrane protein [Function unknown]
Probab=69.46 E-value=6.5 Score=31.27 Aligned_cols=46 Identities=17% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHHHHHhhc--cCccEEeehHHHHHHHhhhHHHhhcccCCCCCCCCC
Q psy16988 55 SQLTTIILAAR--EDVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAGIEP 101 (103)
Q Consensus 55 TQL~ti~LA~r--~~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip~~~ 101 (103)
+-..+++.+-. +++..-++|+.+|+++.-.++..+|+.+ ..+|.++
T Consensus 18 vEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~ 65 (236)
T COG4280 18 VEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNY 65 (236)
T ss_pred HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechH
Confidence 34456666666 7888999999999999999999999987 5566553
No 7
>COG1238 Predicted membrane protein [Function unknown]
Probab=58.53 E-value=11 Score=28.01 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHhhccCccEEeehHHHHHHHhhhHHHhhcccCCCCCCC
Q psy16988 37 RVVIQAFTLTFLAEWGDRSQLTTIILAAREDVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAGI 99 (103)
Q Consensus 37 ~~~~~sf~liflAElGDKTQL~ti~LA~r~~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip~ 99 (103)
..|+.+|+--.+-=++.--.++.+.++- ++++....-+++|..+.+..+-++|+...+.+..
T Consensus 21 ~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 21 GLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 4666777766666677778888888888 9999999999999999999999999998776543
No 8
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=32.34 E-value=9.8 Score=30.04 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=15.6
Q ss_pred ccEEeehHHHHHHHhhhHHHhhcccCC
Q psy16988 68 VYGVTLGGVLGHPAVPRTNIIPSGLNP 94 (103)
Q Consensus 68 ~~~V~~G~~la~~l~t~lav~~G~~l~ 94 (103)
+|+=++|.++|+++...++.++|.++.
T Consensus 3 ~~gki~g~~~G~~~~g~~Ga~~G~~~G 29 (267)
T PRK09430 3 YWGKILGFAFGFLFGGFFGALLGLLIG 29 (267)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445566666666666555555555543
No 9
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.91 E-value=2.1e+02 Score=21.69 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHhhc--cCccEEeehHHHHHHHhhhHH
Q psy16988 29 AQTISLLSRVVIQAFTLTFLAEWGDRSQLTTIILAAR--EDVYGVTLGGVLGHPAVPRTN 86 (103)
Q Consensus 29 ~~~~~~~~~~~~~sf~liflAElGDKTQL~ti~LA~r--~~~~~V~~G~~la~~l~t~la 86 (103)
|+..+.++-.+..+|.+.-++ =+|++...+... .|.+.=++|+++|.+++..+-
T Consensus 12 Rk~~n~v~~~~v~~lai~sl~----~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l 67 (165)
T PF11286_consen 12 RKHLNRVIVACVASLAILSLA----FSQLLIALFGGESGGNFHWNLLGVILGLLLTSALL 67 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHH
Confidence 344444444444444444444 356666666654 567788899999988887653
No 10
>COG3932 Uncharacterized ABC-type transport system, permease components [General function prediction only]
Probab=26.08 E-value=1.1e+02 Score=24.25 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=35.5
Q ss_pred HHHHHhhCChHHHHHHHHhhccCccEEe----ehHHHHHHHhhhHHHhhcc---cCCCCC
Q psy16988 45 LTFLAEWGDRSQLTTIILAAREDVYGVT----LGGVLGHPAVPRTNIIPSG---LNPPRA 97 (103)
Q Consensus 45 liflAElGDKTQL~ti~LA~r~~~~~V~----~G~~la~~l~t~lav~~G~---~l~~~i 97 (103)
.=.++|.|||.+.+.+++.+--+..++= -..+-+.++--.+.+..|+ |+++++
T Consensus 30 gelL~~~ger~Fg~vlvllsLp~llPvp~PG~ST~fga~i~lvslQi~~gr~~pWLP~~i 89 (209)
T COG3932 30 GELLALIGERGFGLVLVLLSLPFLLPVPAPGASTPFGAAILLVSLQITAGRRSPWLPRKI 89 (209)
T ss_pred HHHHHHhhchhHHHHHHHHhccccCCCCCCCccchHHHHHHHHHHHHHcCCCCCccchHH
Confidence 3457899999999999988875544433 2223345555667788887 666554
No 11
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=25.80 E-value=53 Score=24.73 Aligned_cols=47 Identities=19% Similarity=0.008 Sum_probs=38.4
Q ss_pred CChHHHHHHHHhhc--cCccEEeehHHHHHHHhhhHHHhhcccCCCCCC
Q psy16988 52 GDRSQLTTIILAAR--EDVYGVTLGGVLGHPAVPRTNIIPSGLNPPRAG 98 (103)
Q Consensus 52 GDKTQL~ti~LA~r--~~~~~V~~G~~la~~l~t~lav~~G~~l~~~ip 98 (103)
||-.-++.=.|+.+ -+.+.++..+++|.++.+.+.-++|++..+++.
T Consensus 38 ge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l 86 (208)
T COG0586 38 GEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLL 86 (208)
T ss_pred chHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 77777777778888 466789999999999999999999999876544
No 12
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=23.90 E-value=18 Score=23.32 Aligned_cols=26 Identities=12% Similarity=-0.110 Sum_probs=12.7
Q ss_pred cEEeehHHHHHHHhhhHHHhhcccCC
Q psy16988 69 YGVTLGGVLGHPAVPRTNIIPSGLNP 94 (103)
Q Consensus 69 ~~V~~G~~la~~l~t~lav~~G~~l~ 94 (103)
+.+.++.+.+.++..+++..+|.++.
T Consensus 32 c~~~v~~v~~~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 32 CRLAVAIVFAVVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444455555555555543
No 13
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=23.65 E-value=25 Score=20.63 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.9
Q ss_pred EeehHHHHHHHhhhHHHhhcccCCCC
Q psy16988 71 VTLGGVLGHPAVPRTNIIPSGLNPPR 96 (103)
Q Consensus 71 V~~G~~la~~l~t~lav~~G~~l~~~ 96 (103)
.+.|+++|++-.|..+.++..++..|
T Consensus 5 lL~GiVLGlipiTl~GlfvaAylQYr 30 (37)
T PRK00665 5 LLCGIVLGLIPVTLAGLFVAAWNQYK 30 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 46799999999999998887776443
No 14
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=22.21 E-value=27 Score=20.51 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.3
Q ss_pred EeehHHHHHHHhhhHHHhhcccCCC
Q psy16988 71 VTLGGVLGHPAVPRTNIIPSGLNPP 95 (103)
Q Consensus 71 V~~G~~la~~l~t~lav~~G~~l~~ 95 (103)
.+.|+++|++-+|..+.++..++..
T Consensus 5 lL~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 5 LLFGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 4679999999999999888776643
Done!