Query psy16988
Match_columns 103
No_of_seqs 101 out of 1011
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:50:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf5_G Protein PET G; photosyn 17.9 31 0.0011 19.4 0.3 26 70-95 4-29 (37)
2 4fla_A Regulation of nuclear P 11.2 3.1E+02 0.011 19.0 4.1 28 37-64 81-108 (152)
3 1jb0_K Photosystem 1 reaction 10.9 1.2E+02 0.0042 19.6 1.7 18 79-96 19-36 (83)
4 1q90_G Cytochrome B6F complex 9.0 92 0.0031 17.5 0.5 23 71-93 5-27 (37)
5 2jwa_A Receptor tyrosine-prote 6.2 1.1E+02 0.0039 17.5 -0.0 27 67-93 9-35 (44)
6 2knc_B Integrin beta-3; transm 5.9 1.8E+02 0.006 18.2 0.8 23 67-89 9-31 (79)
7 2kke_A Uncharacterized protein 5.4 2.5E+02 0.0084 16.4 1.1 16 3-18 17-32 (53)
8 3e56_A Putative uncharacterize 5.3 3E+02 0.01 18.4 1.7 14 51-64 55-68 (113)
9 2j5d_A BNIP3 TM, BCL2/adenovir 5.3 3.6E+02 0.012 15.5 1.8 17 77-93 26-42 (45)
10 2vv5_A MSCS, small-conductance 5.3 9.1E+02 0.031 17.6 4.6 19 73-91 103-121 (286)
No 1
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=17.88 E-value=31 Score=19.45 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=16.8
Q ss_pred EEeehHHHHHHHhhhHHHhhcccCCC
Q psy16988 70 GVTLGGVLGHPAVPRTNIIPSGLNPP 95 (103)
Q Consensus 70 ~V~~G~~la~~l~t~lav~~G~~l~~ 95 (103)
+.+.|+++|++-.|..+.++-.++..
T Consensus 4 plL~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 4 PLLDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp -----CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 35679999999999988887766543
No 2
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=11.19 E-value=3.1e+02 Score=19.01 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHhh
Q psy16988 37 RVVIQAFTLTFLAEWGDRSQLTTIILAA 64 (103)
Q Consensus 37 ~~~~~sf~liflAElGDKTQL~ti~LA~ 64 (103)
...+.-+.-..-+|+-|+.|++.+.-..
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~ 108 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEY 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999987543
No 3
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=10.94 E-value=1.2e+02 Score=19.63 Aligned_cols=18 Identities=6% Similarity=-0.263 Sum_probs=13.6
Q ss_pred HHHhhhHHHhhcccCCCC
Q psy16988 79 HPAVPRTNIIPSGLNPPR 96 (103)
Q Consensus 79 ~~l~t~lav~~G~~l~~~ 96 (103)
+++|+.+++++|++.-++
T Consensus 19 MI~cN~lai~igk~~I~~ 36 (83)
T 1jb0_K 19 VILCNLFAIALGRYAIQS 36 (83)
T ss_dssp -CHHHHHHHHHHHC-CCC
T ss_pred ehhHHHHHHHHHHHHHcC
Confidence 789999999999987443
No 4
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=9.02 E-value=92 Score=17.45 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.8
Q ss_pred EeehHHHHHHHhhhHHHhhcccC
Q psy16988 71 VTLGGVLGHPAVPRTNIIPSGLN 93 (103)
Q Consensus 71 V~~G~~la~~l~t~lav~~G~~l 93 (103)
.+.|+++|++-.|..+.++-.++
T Consensus 5 lL~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHHH
Confidence 35688999999888888776554
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.15 E-value=1.1e+02 Score=17.49 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=14.9
Q ss_pred CccEEeehHHHHHHHhhhHHHhhcccC
Q psy16988 67 DVYGVTLGGVLGHPAVPRTNIIPSGLN 93 (103)
Q Consensus 67 ~~~~V~~G~~la~~l~t~lav~~G~~l 93 (103)
++.+.++|++.|.++.-.++..++-++
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILI 35 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhhe
Confidence 444556777777555555555444443
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.89 E-value=1.8e+02 Score=18.20 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=12.6
Q ss_pred CccEEeehHHHHHHHhhhHHHhh
Q psy16988 67 DVYGVTLGGVLGHPAVPRTNIIP 89 (103)
Q Consensus 67 ~~~~V~~G~~la~~l~t~lav~~ 89 (103)
+.+.++.|++.|.++.-.+..++
T Consensus 9 n~~~Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHH
Confidence 44566666666655554444433
No 7
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=5.37 E-value=2.5e+02 Score=16.45 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.1
Q ss_pred ccccCcchHHHHHhhc
Q psy16988 3 VVREWPTAVFEKEALT 18 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (103)
|+|-||.+-+++..+-
T Consensus 17 vvrlypdeiealksrv 32 (53)
T 2kke_A 17 VVRLYPDEIEALKSRV 32 (53)
T ss_dssp EEEECHHHHHHHHTTC
T ss_pred EEEeChhHHHHHHhcC
Confidence 6788999888776543
No 8
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=5.27 E-value=3e+02 Score=18.41 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=11.0
Q ss_pred hCChHHHHHHHHhh
Q psy16988 51 WGDRSQLTTIILAA 64 (103)
Q Consensus 51 lGDKTQL~ti~LA~ 64 (103)
+|||-||+-+.+-+
T Consensus 55 l~DreQLlqvllDA 68 (113)
T 3e56_A 55 LSDREQLLQVLLDA 68 (113)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 69999998876543
No 9
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=5.26 E-value=3.6e+02 Score=15.53 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=10.1
Q ss_pred HHHHHhhhHHHhhcccC
Q psy16988 77 LGHPAVPRTNIIPSGLN 93 (103)
Q Consensus 77 la~~l~t~lav~~G~~l 93 (103)
+-|+++.++++.+|+-+
T Consensus 26 ~shiL~~GlgIyIGkRL 42 (45)
T 2j5d_A 26 LSHLLAIGLGIYIGRRL 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcceEEeeeee
Confidence 34666666666666544
No 10
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=5.25 E-value=9.1e+02 Score=17.55 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=11.1
Q ss_pred ehHHHHHHHhhhHHHhhcc
Q psy16988 73 LGGVLGHPAVPRTNIIPSG 91 (103)
Q Consensus 73 ~G~~la~~l~t~lav~~G~ 91 (103)
+|..+|+++-+.++=+++.
T Consensus 103 ~g~aig~a~q~~l~n~~sG 121 (286)
T 2vv5_A 103 AGLVVGLALQGSLSNLAAG 121 (286)
T ss_dssp HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556666666666555544
Done!