Query psy16988
Match_columns 103
No_of_seqs 101 out of 1011
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 18:50:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16988.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16988hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74f1 f.23.25.1 (F:1-32) Pet 13.2 82 0.006 15.6 2.5 18 35-53 5-22 (32)
2 d1jb0k_ f.30.1.1 (K:) Photosys 8.7 83 0.006 17.7 1.7 17 80-96 1-17 (58)
3 d1q90g_ f.23.26.1 (G:) PetG su 5.4 1.4E+02 0.0099 14.6 1.3 21 72-92 6-26 (30)
4 d1un8a1 a.208.1.1 (A:336-550) 5.3 60 0.0044 21.8 -0.2 15 47-61 133-147 (215)
5 d2bida_ f.1.4.1 (A:) Proapopto 4.9 69 0.005 22.1 -0.1 10 46-55 90-99 (197)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 4.5 2E+02 0.014 14.4 1.6 17 73-89 7-23 (34)
7 d2bl8a1 a.29.8.2 (A:4-103) Ent 4.5 43 0.0031 20.9 -1.3 8 50-57 93-100 (100)
8 d1gmxa_ c.46.1.3 (A:) Sulfurtr 4.1 1.2E+02 0.0087 17.2 0.6 35 45-79 61-96 (108)
9 d1to2i_ d.40.1.1 (I:) Chymotry 3.9 1.2E+02 0.0086 17.0 0.4 13 3-15 1-18 (64)
10 d2phpa1 c.74.1.2 (A:241-420) U 3.5 2E+02 0.015 18.8 1.4 19 50-68 68-87 (180)
No 1
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.23 E-value=82 Score=15.62 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q psy16988 35 LSRVVIQAFTLTFLAEWGD 53 (103)
Q Consensus 35 ~~~~~~~sf~liflAElGD 53 (103)
+.++-+.||.++|+. ||=
T Consensus 5 il~aa~lsfglifvg-wgl 22 (32)
T d2e74f1 5 MLYAALLSFGLIFVG-WGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhhHHHHH-hHH
Confidence 345667788888886 653
No 2
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=8.67 E-value=83 Score=17.73 Aligned_cols=17 Identities=6% Similarity=-0.240 Sum_probs=13.0
Q ss_pred HHhhhHHHhhcccCCCC
Q psy16988 80 PAVPRTNIIPSGLNPPR 96 (103)
Q Consensus 80 ~l~t~lav~~G~~l~~~ 96 (103)
++|+.+++.+|+..-++
T Consensus 1 I~cN~lai~ig~~tI~~ 17 (58)
T d1jb0k_ 1 ILCNLFAIALGRYAIQS 17 (58)
T ss_dssp CHHHHHHHHHHHC-CCC
T ss_pred CeehhHHHHHHHHHHcC
Confidence 47899999999987555
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.38 E-value=1.4e+02 Score=14.61 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=15.2
Q ss_pred eehHHHHHHHhhhHHHhhccc
Q psy16988 72 TLGGVLGHPAVPRTNIIPSGL 92 (103)
Q Consensus 72 ~~G~~la~~l~t~lav~~G~~ 92 (103)
..|+++|++=.|..+.++..+
T Consensus 6 l~GivlGlipiTl~Glfv~Ay 26 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAY 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHH
Confidence 468888888888777766544
No 4
>d1un8a1 a.208.1.1 (A:336-550) Citrobacter dihydroxyacetone kinase extra ATP-binding domain {Citrobacter freundii [TaxId: 546]}
Probab=5.31 E-value=60 Score=21.76 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHhhCChHHHHHHH
Q psy16988 47 FLAEWGDRSQLTTII 61 (103)
Q Consensus 47 flAElGDKTQL~ti~ 61 (103)
--++.||||.+-++-
T Consensus 133 g~a~~GDkTmlDvL~ 147 (215)
T d1un8a1 133 GGADEGDRTMIDALQ 147 (215)
T ss_dssp HCCCTTSSSTHHHHH
T ss_pred hcccCCCCchHHHHH
Confidence 346679999998875
No 5
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.86 E-value=69 Score=22.14 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=7.7
Q ss_pred HHHHhhCChH
Q psy16988 46 TFLAEWGDRS 55 (103)
Q Consensus 46 iflAElGDKT 55 (103)
-=|||+|||-
T Consensus 90 ~qLAqiGD~l 99 (197)
T d2bida_ 90 RHLAQVGDSM 99 (197)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3589999973
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.54 E-value=2e+02 Score=14.38 Aligned_cols=17 Identities=12% Similarity=0.129 Sum_probs=12.2
Q ss_pred ehHHHHHHHhhhHHHhh
Q psy16988 73 LGGVLGHPAVPRTNIIP 89 (103)
Q Consensus 73 ~G~~la~~l~t~lav~~ 89 (103)
+|.+.|+...+.+++++
T Consensus 7 v~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 7 VATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhhhhhHhheeeee
Confidence 56677777777777765
No 7
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=4.53 E-value=43 Score=20.93 Aligned_cols=8 Identities=50% Similarity=1.153 Sum_probs=4.0
Q ss_pred hhCChHHH
Q psy16988 50 EWGDRSQL 57 (103)
Q Consensus 50 ElGDKTQL 57 (103)
-++||+||
T Consensus 93 ~~~dksQF 100 (100)
T d2bl8a1 93 DYGDKSQF 100 (100)
T ss_dssp STTCGGGC
T ss_pred CCchhccC
Confidence 34555553
No 8
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
Probab=4.14 E-value=1.2e+02 Score=17.24 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHHHHhhCChHHHHHHHHhhc-cCccEEeehHHHHH
Q psy16988 45 LTFLAEWGDRSQLTTIILAAR-EDVYGVTLGGVLGH 79 (103)
Q Consensus 45 liflAElGDKTQL~ti~LA~r-~~~~~V~~G~~la~ 79 (103)
+++.|.-|.+++.++-.|... ++-..++-|.+-+.
T Consensus 61 ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~~W 96 (108)
T d1gmxa_ 61 VMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred ccccCCCChHHHHHHHHHHHcCCCCEEEEcChHHHH
Confidence 456677799999988888888 66677888887765
No 9
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=3.93 E-value=1.2e+02 Score=17.05 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=8.0
Q ss_pred ccccCcc-----hHHHHH
Q psy16988 3 VVREWPT-----AVFEKE 15 (103)
Q Consensus 3 ~~~~~~~-----~~~~~~ 15 (103)
+|.+||| +|++++
T Consensus 1 ~K~sWPELVG~~~~~Ak~ 18 (64)
T d1to2i_ 1 MKTEWPELVGKSVEEAKK 18 (64)
T ss_dssp -CCBCGGGTTSBHHHHHH
T ss_pred CCccChhhcCCCHHHHHH
Confidence 4778886 455555
No 10
>d2phpa1 c.74.1.2 (A:241-420) Uncharacterized protein MJ0236 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=3.46 E-value=2e+02 Score=18.75 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=0.0
Q ss_pred hhCChHHHHHHHHhhc-cCc
Q psy16988 50 EWGDRSQLTTIILAAR-EDV 68 (103)
Q Consensus 50 ElGDKTQL~ti~LA~r-~~~ 68 (103)
|+|-.+-++.+.|+++ ++|
T Consensus 68 ~FGaS~HlA~~LL~a~~~~p 87 (180)
T d2phpa1 68 EFGASEHIAKIILSASKFNP 87 (180)
T ss_dssp EETSCHHHHHHHHHHHTTCT
T ss_pred cCCCchHHHHHHHHHHHhCC
Done!