RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16988
         (103 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 0.97
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 19/81 (23%)

Query: 20  DVESGKSYQAQTISLLSRVVIQAFTLTFLAEWG--DRSQLTTIILAAREDVYGVTLGGVL 77
           D   G   +  + S+  R+V     L    +W    + + T I+       +G   GG  
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLP--VKWETTTQFKATHIL------DFG--PGGAS 510

Query: 78  GHPAVPRTN-------IIPSG 91
           G   +   N       +I +G
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAG 531



 Score = 24.6 bits (53), Expect = 7.3
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 8/46 (17%)

Query: 8  PTAVFEKEA-----LTGDVESGKSYQAQTISLLSRVVIQAFTLTFL 48
          PT   E        ++  VE  K    Q   +L  + +  F   +L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSK--VGQFDQVL-NLCLTEFENCYL 96


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 3.0
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)

Query: 28  QAQTISLLSRVVIQAFTLTFLAEWG-----DRSQLTTII 61
           +  T +     +I       LA W      +  +LTTII
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0768    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,597,032
Number of extensions: 82109
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 7
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)