RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16988
         (103 letters)



>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
          [TaxId: 274]}
          Length = 191

 Score = 28.8 bits (63), Expect = 0.094
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 16 ALTGDVESGKSYQAQTISLLSRVVIQA 42
           +TG++ SGKS  A  +      V+  
Sbjct: 7  GITGNIGSGKSTVAALLRSWGYPVLDL 33


>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
          [TaxId: 562]}
          Length = 208

 Score = 27.9 bits (61), Expect = 0.21
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 16 ALTGDVESGKSYQAQTISLLSRVVIQA 42
          ALTG + SGKS  A   + L   VI A
Sbjct: 7  ALTGGIGSGKSTVANAFADLGINVIDA 33


>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
          influenzae [TaxId: 727]}
          Length = 205

 Score = 27.1 bits (59), Expect = 0.37
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 16 ALTGDVESGKSYQAQTISLLSRVVIQA 42
           LTG + SGK+  A   + L   ++ A
Sbjct: 6  GLTGGIGSGKTTIANLFTDLGVPLVDA 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,171
Number of extensions: 13668
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 3
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)