Query psy16990
Match_columns 250
No_of_seqs 181 out of 276
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:53:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3614|consensus 100.0 6.3E-61 1.4E-65 493.8 17.1 189 1-210 92-286 (1381)
2 KOG3614|consensus 98.5 4.8E-08 1E-12 103.6 2.6 37 212-249 58-94 (1381)
3 TIGR00730 conserved hypothetic 94.2 0.19 4.1E-06 43.4 7.2 67 29-103 2-68 (178)
4 TIGR00725 conserved hypothetic 93.6 0.3 6.5E-06 41.4 7.1 63 29-102 3-65 (159)
5 COG1611 Predicted Rossmann fol 83.1 5.1 0.00011 35.4 7.2 71 26-104 13-83 (205)
6 cd02186 alpha_tubulin The tubu 78.3 7.9 0.00017 37.9 7.4 95 4-100 65-173 (434)
7 cd02189 delta_tubulin The tubu 76.1 8 0.00017 38.0 6.7 92 5-99 59-167 (446)
8 PLN00220 tubulin beta chain; P 69.1 18 0.0004 35.4 7.4 94 4-100 64-172 (447)
9 cd02188 gamma_tubulin Gamma-tu 64.8 19 0.00042 35.2 6.6 93 5-100 64-172 (431)
10 PLN00222 tubulin gamma chain; 61.7 20 0.00044 35.4 6.1 94 4-100 65-174 (454)
11 cd02190 epsilon_tubulin The tu 56.1 46 0.001 31.9 7.5 93 4-100 33-141 (379)
12 TIGR02826 RNR_activ_nrdG3 anae 56.0 39 0.00086 28.1 6.2 58 7-73 45-102 (147)
13 PTZ00335 tubulin alpha chain; 50.7 43 0.00092 33.0 6.4 92 6-100 68-174 (448)
14 KOG0025|consensus 50.7 10 0.00023 36.0 2.0 39 61-110 161-199 (354)
15 PRK13660 hypothetical protein; 49.2 93 0.002 27.2 7.6 68 30-100 4-80 (182)
16 cd02187 beta_tubulin The tubul 48.8 53 0.0012 32.0 6.7 94 4-100 63-171 (425)
17 PTZ00010 tubulin beta chain; P 47.9 53 0.0011 32.3 6.5 94 4-100 64-172 (445)
18 PTZ00387 epsilon tubulin; Prov 47.8 59 0.0013 32.3 6.8 91 6-99 67-172 (465)
19 PF00091 Tubulin: Tubulin/FtsZ 43.9 51 0.0011 28.7 5.2 95 4-100 58-166 (216)
20 cd06059 Tubulin The tubulin su 36.7 1.1E+02 0.0024 29.1 6.7 94 5-100 24-131 (382)
21 KOG2170|consensus 36.4 34 0.00074 32.7 3.0 27 11-37 92-120 (344)
22 PLN00221 tubulin alpha chain; 35.4 1E+02 0.0023 30.3 6.4 92 6-100 68-174 (450)
23 COG1493 HprK Serine kinase of 34.5 81 0.0017 29.9 5.2 50 9-71 66-115 (308)
24 PF06309 Torsin: Torsin; Inte 33.5 40 0.00087 27.9 2.7 26 11-36 35-62 (127)
25 cd00286 Tubulin_FtsZ Tubulin/F 32.2 2.6E+02 0.0057 25.8 8.3 94 4-100 23-131 (328)
26 PF06258 Mito_fiss_Elm1: Mitoc 31.3 1.4E+02 0.0031 27.9 6.3 60 23-84 144-204 (311)
27 PHA00026 cp coat protein 30.6 38 0.00083 27.3 2.1 33 155-187 3-36 (129)
28 cd05126 Mth938 Mth938 domain. 29.8 1.2E+02 0.0025 24.5 4.8 41 6-51 44-84 (117)
29 COG3510 CmcI Cephalosporin hyd 29.8 44 0.00095 30.2 2.5 40 148-187 146-210 (237)
30 PF03584 Herpes_ICP4_N: Herpes 29.0 60 0.0013 28.3 3.1 70 9-84 58-129 (173)
31 PLN03226 serine hydroxymethylt 28.8 1E+02 0.0022 30.5 5.1 55 8-74 170-225 (475)
32 PF08659 KR: KR domain; Inter 28.8 73 0.0016 26.6 3.6 35 61-99 1-35 (181)
33 PLN02689 Bifunctional isoaspar 28.3 94 0.002 29.5 4.6 52 28-82 4-57 (318)
34 PF07819 PGAP1: PGAP1-like pro 28.2 43 0.00092 29.6 2.2 40 6-45 130-176 (225)
35 PF06908 DUF1273: Protein of u 27.5 1.9E+02 0.0042 24.9 6.1 55 44-100 26-80 (177)
36 PRK11121 nrdG anaerobic ribonu 26.6 2.1E+02 0.0045 23.7 6.0 42 27-71 66-110 (154)
37 PRK05465 ethanolamine ammonia- 26.2 2.3E+02 0.005 26.3 6.6 81 10-97 96-179 (260)
38 cd01782 AF6_RA_repeat1 Ubiquit 23.2 1.2E+02 0.0026 24.7 3.7 32 2-33 40-76 (112)
39 PRK11864 2-ketoisovalerate fer 23.2 2.7E+02 0.0059 26.2 6.6 62 1-66 174-235 (300)
40 cd00248 Mth938-like Mth938-lik 22.4 2.1E+02 0.0045 22.5 4.9 59 6-85 37-95 (109)
41 cd02202 FtsZ_type2 FtsZ is a G 21.5 5E+02 0.011 24.6 8.2 90 4-100 35-139 (349)
42 PF05301 Mec-17: Touch recepto 21.5 73 0.0016 26.2 2.1 25 3-27 81-105 (120)
43 PF00106 adh_short: short chai 20.9 1.1E+02 0.0024 24.2 3.1 22 62-84 2-23 (167)
44 cd04702 ASRGL1_like ASRGL1_lik 20.1 81 0.0018 29.2 2.4 40 29-70 3-42 (261)
No 1
>KOG3614|consensus
Probab=100.00 E-value=6.3e-61 Score=493.75 Aligned_cols=189 Identities=55% Similarity=0.943 Sum_probs=177.6
Q ss_pred CEeecCCCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHH
Q psy16990 1 YVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDA 80 (250)
Q Consensus 1 yiRls~dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~A 80 (250)
|||+|+||+|+.|++||+++|+|++|+|||||+||++||+|+|||+++|||||+||||||||||||||+++|||||||+|
T Consensus 92 yiR~S~dt~P~~i~hLm~k~W~l~~P~LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~A 171 (1381)
T KOG3614|consen 92 YIRVSYDTDPGAILHLMTKEWQLEVPKLVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSA 171 (1381)
T ss_pred eEEeCCCCChHHHHHHHHHHhCcCCCcEEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCC-ceEEEeecccceeeccccccccCCCCCCcccCCCCCcccccCCCCcccccccCCCCCCcccccCCCcEE
Q psy16990 81 LLMERSQRSG-RVVSIGIAPWGIVENNHELIVCRPEQPARLFPIGENNHELIGHNKDVPYHSISSPRSKFAVLNNRHAYF 159 (250)
Q Consensus 81 v~d~~s~~~~-kv~~IGIApWG~V~nr~~L~~~~~~~P~~~~~~~~~~~~l~g~~~~~~y~~~~~~~~~~~~Ld~nHshF 159 (250)
++||++.+++ |||+|||||||+|+|| ++|||.|.+++|+.++++.+++..||+|||||
T Consensus 172 l~dh~~~s~~~~ivaiGiApWGvv~nr---------------------~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShF 230 (1381)
T KOG3614|consen 172 LRDHSLASSGGKIVAIGIAPWGIVKNR---------------------DDLIGGDFTVSYQTDDNPLNKLTILNNNHSHF 230 (1381)
T ss_pred HHhccchhccCceEEEeeccceeeech---------------------hhhccCCcceeeeecCCCCcceeeccCCCcee
Confidence 9999877665 9999999999999999 67778888899999999988999999999999
Q ss_pred EEeeCCCCCCCChhHHHHHHHHHHhhhccCCCCcccccC-----CCCCCCCCcccc
Q psy16990 160 LLVDNGTAGKYGAEIILRRKLEKYISNQKLHPGKSKIVG-----AKGGENGEPLVF 210 (250)
Q Consensus 160 lLVDdGt~g~~G~E~~lR~~LE~~Is~q~~~~~~~~~v~-----~~~~~nge~lvq 210 (250)
|||||||+|+||+|++||.+||+|||+|+++.+..++|| .+|++|....+.
T Consensus 231 iLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg~nti~~I~ 286 (1381)
T KOG3614|consen 231 ILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGGPNTLAIIL 286 (1381)
T ss_pred EEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCCchHHHHHH
Confidence 999999999999999999999999999999998877888 566666555443
No 2
>KOG3614|consensus
Probab=98.50 E-value=4.8e-08 Score=103.56 Aligned_cols=37 Identities=41% Similarity=0.600 Sum_probs=33.7
Q ss_pred CCCCcccccccCCCCCCCcceEEEEcCCCCCCCccccC
Q psy16990 212 STNEIWTASLHTSPSNTDAYGTIEFQGGPHPSKAQVRY 249 (250)
Q Consensus 212 ~~~~~ws~~~ht~~~pTda~g~i~Fq~~~~~~ka~y~~ 249 (250)
..+.+|+++|||+.+||||||+|+|||++|.. |||+|
T Consensus 58 ~~~~~W~~~~ht~~~pTdafG~i~F~G~~~~~-akyiR 94 (1381)
T KOG3614|consen 58 TDPVKWDMSKHTDTVPTDAFGDIVFQGGGHKP-AKYIR 94 (1381)
T ss_pred CCCCCCChhhCCccccccceeeEEeccCCcCc-ceeEE
Confidence 34466999999999999999999999999988 99997
No 3
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=94.21 E-value=0.19 Score=43.45 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=46.5
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccccee
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGIV 103 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~V 103 (250)
.|+|.||++.-.-++. .+.-++ |-++.-..|-=++|||-+.|+|..+.+++++.. + ..|||.|-...
T Consensus 2 ~i~V~~~s~~~~~~~~-~~~A~~-lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g----G--~viGi~p~~l~ 68 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAY-KELAAE-LGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG----G--TAVGVNPSGLF 68 (178)
T ss_pred EEEEECcCCCCCCcHH-HHHHHH-HHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC----C--eEEEecchhhh
Confidence 5899999876443433 333333 444433458889999999999999999998643 2 36999887643
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=93.58 E-value=0.3 Score=41.36 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=44.5
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecccce
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGI 102 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~ 102 (250)
.|+|.|+.+ ..+...+.-++ |-+..-..|.-|++|| ..|+|..+.+++.+.. + ..|||-|-+.
T Consensus 3 ~I~V~gss~---~~~~~~~~A~~-lg~~La~~g~~lv~Gg-~~GlM~a~a~ga~~~g----g--~viGVlp~~l 65 (159)
T TIGR00725 3 QIGVIGSSN---KSEELYEIAYR-LGKELAKKGHILINGG-RTGVMEAVSKGAREAG----G--LVVGILPDED 65 (159)
T ss_pred EEEEEeCCC---CChHHHHHHHH-HHHHHHHCCCEEEcCC-chhHHHHHHHHHHHCC----C--eEEEECChhh
Confidence 589999987 35565655555 5555555687778855 4599999999998643 2 3588888654
No 5
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=83.12 E-value=5.1 Score=35.45 Aligned_cols=71 Identities=27% Similarity=0.272 Sum_probs=46.8
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecccceee
Q psy16990 26 PKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGIVE 104 (250)
Q Consensus 26 P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~V~ 104 (250)
.-.-|+|.+|...-..+..+.+.-++ |-++.-.-|.-|+||| ..|||..+.+...+... ..|||-|=....
T Consensus 13 ~~~~i~V~~gs~~~~~~~~~~~~a~~-lg~~la~~g~~V~tGG-~~GiMea~~~gA~~~gg------~~vGi~p~~~~~ 83 (205)
T COG1611 13 GIRQIVVICGSARGIEPEEYYELARE-LGRELAKRGLLVITGG-GPGVMEAVARGALEAGG------LVVGILPGLLHE 83 (205)
T ss_pred CcceEEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEeCC-chhhhhHHHHHHHHcCC------eEEEecCCCchh
Confidence 34456677776654444445555555 5556555677777777 56999999999996543 568888765443
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=78.26 E-value=7.9 Score=37.86 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=61.2
Q ss_pred ecCCCChHHHHHHhHhhhc-CCCCCeEEEEecCCCC------CCCcHHHHHHHHHHHHHHhhhc---CcEE----EeCCc
Q psy16990 4 LSYDTRPENILQLFTREWS-LELPKLLITVQGGKAN------FELQPKLKKVLRKGLLKAAKTT---GAWV----FTGGT 69 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa~n------f~l~~~L~~~f~~GLikAAqsT---gAWI----iTgG~ 69 (250)
|--|++|.+|-+++...++ |=.|+-+|+=.+|+.| ...-+.+.+.+..-+.|.++.. ..-+ +-|||
T Consensus 65 v~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGT 144 (434)
T cd02186 65 VFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGT 144 (434)
T ss_pred cccCCcHHHHHhhccCccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCc
Confidence 3468899999999876554 5667766666677766 3433444444444455555544 3344 45888
Q ss_pred ccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 70 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 70 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
-+|+.-.+-++++|.-.+ .-+.+++|.|-
T Consensus 145 GSGlgs~l~e~l~d~y~~--~~~~~~~v~P~ 173 (434)
T cd02186 145 GSGFGSLLLERLSVDYGK--KSKLEFTVYPS 173 (434)
T ss_pred chhHHHHHHHHHHHhcCc--cceeeEEEeCC
Confidence 899999999999985321 12556666653
No 7
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=76.09 E-value=8 Score=37.96 Aligned_cols=92 Identities=18% Similarity=0.382 Sum_probs=63.3
Q ss_pred cCCCChHHHHHHhHhh----hcCCCCCeEEEEecCCCCCC-----C----cHHHHHHHHHHHHHHhhhcCcEEEe----C
Q psy16990 5 SYDTRPENILQLFTRE----WSLELPKLLITVQGGKANFE-----L----QPKLKKVLRKGLLKAAKTTGAWVFT----G 67 (250)
Q Consensus 5 s~dt~p~~i~~Ll~~~----W~L~~P~LVISV~GGa~nf~-----l----~~~L~~~f~~GLikAAqsTgAWIiT----g 67 (250)
--|++|.+|-+++... |.+.+.+++..--|-..||. . ...+.+.+|+ ++..+.+...-+++ |
T Consensus 59 ~iD~ep~vi~~i~~~~~~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~-~~E~cd~~~gf~~~~sl~G 137 (446)
T cd02189 59 LVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRK-EVEKCDSFEGFLVLHSLAG 137 (446)
T ss_pred ecCCCchHHHHhhcCCCCcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHH-HHHhCCCccceEEEecCCC
Confidence 3589999999998743 88888887776655556665 2 2444555666 56666666666665 7
Q ss_pred CcccchhhHHHHHhhhhhccCCCceEEEeecc
Q psy16990 68 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 99 (250)
Q Consensus 68 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 99 (250)
||=.|+.-.+-++++|.-.. .-+.++.|.|
T Consensus 138 GtGSG~gs~l~e~l~d~y~~--~~~~~~~v~P 167 (446)
T cd02189 138 GTGSGLGSRVTELLRDEYPE--SLLLNIVVWP 167 (446)
T ss_pred CcchHHHHHHHHHHHHhcCc--cceeeeeccC
Confidence 88899999999999985321 1255666666
No 8
>PLN00220 tubulin beta chain; Provisional
Probab=69.14 E-value=18 Score=35.43 Aligned_cols=94 Identities=16% Similarity=0.250 Sum_probs=62.3
Q ss_pred ecCCCChHHHHHHhHhhhc-CCCCCeEEEEecCCCC-CC-----CcHH----HHHHHHHHHHHHhhhcCcEEEe----CC
Q psy16990 4 LSYDTRPENILQLFTREWS-LELPKLLITVQGGKAN-FE-----LQPK----LKKVLRKGLLKAAKTTGAWVFT----GG 68 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa~n-f~-----l~~~----L~~~f~~GLikAAqsTgAWIiT----gG 68 (250)
|--|++|..|-+++...|+ +-.|+-+|+=..|+.| |. .-+. +.+.+|+ .+..+.+...-+|+ ||
T Consensus 64 v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~-~~E~cd~l~gf~~~~sl~GG 142 (447)
T PLN00220 64 VLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK-EAENCDCLQGFQVCHSLGGG 142 (447)
T ss_pred EecCCcHHHHHHHhcCccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHH-HHHhCcCcCceEEEEecCCC
Confidence 3468899999999988886 5556655555566644 43 2233 4455666 55666666677776 67
Q ss_pred cccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 69 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 69 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
|-+|+.-.+-++++|.-.+ .-+.+++|.|-
T Consensus 143 TGSG~gs~l~~~l~~~y~~--~~~~~~~v~P~ 172 (447)
T PLN00220 143 TGSGMGTLLISKIREEYPD--RMMLTFSVFPS 172 (447)
T ss_pred ccccHHHHHHHHHHHhccc--cceeeeEEECC
Confidence 7799999999999985321 12556667664
No 9
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=64.79 E-value=19 Score=35.23 Aligned_cols=93 Identities=16% Similarity=0.325 Sum_probs=60.4
Q ss_pred cCCCChHHHHHHhHhhhc--CCCCCeEEEEec-CC-CCCC--------CcHHHHHHHHHHHHHHhhhcCcEEEe----CC
Q psy16990 5 SYDTRPENILQLFTREWS--LELPKLLITVQG-GK-ANFE--------LQPKLKKVLRKGLLKAAKTTGAWVFT----GG 68 (250)
Q Consensus 5 s~dt~p~~i~~Ll~~~W~--L~~P~LVISV~G-Ga-~nf~--------l~~~L~~~f~~GLikAAqsTgAWIiT----gG 68 (250)
--|++|.+|-+++....+ +.+-+++..-.| |+ .||. +...+.+.+|+ ++..+.+..+-+|+ ||
T Consensus 64 ~iD~Ep~vi~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~-~~E~cd~l~gf~i~~SlgGG 142 (431)
T cd02188 64 LIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDR-EADGSDSLEGFVLCHSIAGG 142 (431)
T ss_pred eccCCcchhhhhhcCccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcceeEEEecCCCC
Confidence 358899999999876543 444455555552 44 4553 33455666666 55556666766665 67
Q ss_pred cccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 69 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 69 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
|-+|+.-.+-++++|.-.+ .-+.+++|-|-
T Consensus 143 TGSG~gs~l~e~L~d~y~~--~~~~~~~V~P~ 172 (431)
T cd02188 143 TGSGMGSYLLERLNDRYPK--KLIQTYSVFPN 172 (431)
T ss_pred cchhHHHHHHHHHHhHcCc--ceeeeEEecCC
Confidence 7889999999999985321 12567777663
No 10
>PLN00222 tubulin gamma chain; Provisional
Probab=61.71 E-value=20 Score=35.37 Aligned_cols=94 Identities=19% Similarity=0.341 Sum_probs=63.1
Q ss_pred ecCCCChHHHHHHhHhhhc--CCCCCeEEEEec-CCC-CCC--------CcHHHHHHHHHHHHHHhhhcCcEEEe----C
Q psy16990 4 LSYDTRPENILQLFTREWS--LELPKLLITVQG-GKA-NFE--------LQPKLKKVLRKGLLKAAKTTGAWVFT----G 67 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~--L~~P~LVISV~G-Ga~-nf~--------l~~~L~~~f~~GLikAAqsTgAWIiT----g 67 (250)
|=-|++|.+|-++....++ +.+=+++....| |+. |+. +...+.+.+|+ ++..+.+..+-+++ |
T Consensus 65 v~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~~g~~~~d~i~d~ir~-~~E~cd~l~gf~i~~sl~G 143 (454)
T PLN00222 65 LLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGEQVEEDIMDMIDR-EADGSDSLEGFVLCHSIAG 143 (454)
T ss_pred eecCCCcchhhhhccCccccccCccceeecccCCCcccchHHhHHHHHHHHHHHHHHHHH-HHHhCCCccceEEeecCCC
Confidence 3458899999999765544 444457777764 553 342 33455666676 66677777777776 6
Q ss_pred CcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 68 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 68 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
||-.|+.-.+-++++|.-.. .-+.+++|.|-
T Consensus 144 GTGSGlgs~lle~L~d~y~~--~~~~~~~v~P~ 174 (454)
T PLN00222 144 GTGSGMGSYLLEALNDRYSK--KLVQTYSVFPN 174 (454)
T ss_pred CccchHHHHHHHHHHhhcCC--cceeeEEecCC
Confidence 78899999999999985321 12567777664
No 11
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=56.14 E-value=46 Score=31.94 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=55.0
Q ss_pred ecCCCChHHHHHHhHhh--hcCCCCCeEEEEecCCC-CCC-----CcHHH----HHHHHHHHHHHhhhcCcEEEe----C
Q psy16990 4 LSYDTRPENILQLFTRE--WSLELPKLLITVQGGKA-NFE-----LQPKL----KKVLRKGLLKAAKTTGAWVFT----G 67 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~--W~L~~P~LVISV~GGa~-nf~-----l~~~L----~~~f~~GLikAAqsTgAWIiT----g 67 (250)
|--|++|..|-+++... |.+.+ +.+|+=..|+. ||. .-+.+ .+.+|+ .+..+.+...-+|+ |
T Consensus 33 v~iD~e~~~i~~i~~~~~~~~~~~-~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~-~~E~cd~l~gf~i~~sl~G 110 (379)
T cd02190 33 VLIDMEEGVVNEILKGPLRDLFDE-TQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRK-AAEKCDSLQSFFILHSLGG 110 (379)
T ss_pred eeccCChhHHHHHhcCccccccCc-ccccccCCCCCCCccceeeccchhHHHHHHHHHHH-HHhhCcCcceEEEEeecCC
Confidence 34689999999998753 44444 44444444553 443 22334 444555 34444444444554 7
Q ss_pred CcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 68 GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 68 G~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
||-+|+.-.+-++++|.-.+ .-+.++.|.|-
T Consensus 111 GTGSG~gs~l~e~l~~~y~~--~~~~~~~v~P~ 141 (379)
T cd02190 111 GTGSGLGTYVLELLADEFPE--VYRFVTSVYPS 141 (379)
T ss_pred CcchhHHHHHHHHHHHhcCc--cceEEEeecCC
Confidence 78889999999999985321 12556666553
No 12
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=56.05 E-value=39 Score=28.13 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccch
Q psy16990 7 DTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGV 73 (250)
Q Consensus 7 dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV 73 (250)
..+++.+++.+.+.... .--|+++||. -+.+.+.++++. +|+. ....||.|||+..-+
T Consensus 45 ~lt~eel~~~I~~~~~~---~~gVt~SGGE---l~~~~l~~ll~~--lk~~-Gl~i~l~Tg~~~~~~ 102 (147)
T TIGR02826 45 KLTPEYLTKTLDKYRSL---ISCVLFLGGE---WNREALLSLLKI--FKEK-GLKTCLYTGLEPKDI 102 (147)
T ss_pred CCCHHHHHHHHHHhCCC---CCEEEEechh---cCHHHHHHHHHH--HHHC-CCCEEEECCCCCHHH
Confidence 35677888888665422 2369999999 233556666665 2322 457899999877433
No 13
>PTZ00335 tubulin alpha chain; Provisional
Probab=50.71 E-value=43 Score=33.03 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=61.2
Q ss_pred CCCChHHHHHHhHhhhc-CCCCCeEEEEecCCCC-CC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy16990 6 YDTRPENILQLFTREWS-LELPKLLITVQGGKAN-FE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGTN 70 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa~n-f~---------l~~~L~~~f~~GLikAAqsTgAWIiT----gG~~ 70 (250)
-|++|..|-+++...++ |=.|+-+|+=..|+.| |. +...+.+.+|+ .+..+.+...-+|+ |||-
T Consensus 68 iD~e~~~i~~i~~~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~-~~E~cD~l~gf~i~~Sl~GGTG 146 (448)
T PTZ00335 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK-LADNCTGLQGFLVFHAVGGGTG 146 (448)
T ss_pred ccCCcchhhhcccCccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHH-hHHhccCccceeEeeccCCCcc
Confidence 47899999999877664 5566666655566654 43 22344555666 55666666666664 7888
Q ss_pred cchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 71 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 71 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+|+.-.+-++++|.-.. .-+.++.|.|-
T Consensus 147 SGlgs~l~e~l~d~yp~--~~~~~~~v~P~ 174 (448)
T PTZ00335 147 SGLGSLLLERLSVDYGK--KSKLGFTIYPS 174 (448)
T ss_pred chHHHHHHHHHHHhccc--cceeeEEecCC
Confidence 99999999999986321 12556667664
No 14
>KOG0025|consensus
Probab=50.67 E-value=10 Score=36.02 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=33.3
Q ss_pred CcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecccceeecccccc
Q psy16990 61 GAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGIVENNHELI 110 (250)
Q Consensus 61 gAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG~V~nr~~L~ 110 (250)
|-|||-+|.|+||.|+|=|..| +.||-+-++|.+|+.+.
T Consensus 161 GD~vIQNganS~VG~~ViQlak-----------a~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 161 GDSVIQNGANSGVGQAVIQLAK-----------ALGIKTINVVRDRPNIE 199 (354)
T ss_pred CCeeeecCcccHHHHHHHHHHH-----------HhCcceEEEeecCccHH
Confidence 8899999999999888877666 47888889999997765
No 15
>PRK13660 hypothetical protein; Provisional
Probab=49.21 E-value=93 Score=27.17 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=46.8
Q ss_pred EEEecCCCCCCC-------c--HHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 30 ITVQGGKANFEL-------Q--PKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 30 ISV~GGa~nf~l-------~--~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+.|| |.+.++| + ..++..+++-|..+.+.==-|+|||| +.||=--.+++|-+-...- ..+-++=|.|.
T Consensus 4 ~~~T-GyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~gg-alG~d~wAaEvvl~LK~~y-p~lkL~~~~PF 80 (182)
T PRK13660 4 LLVT-GYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISG-QLGVELWAAEVVLELKEEY-PDLKLAVITPF 80 (182)
T ss_pred EEEe-ccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECC-cchHHHHHHHHHHHHHhhC-CCeEEEEEeCc
Confidence 4444 4666666 2 45677888888888886567999999 8899888888887654221 23455555554
No 16
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=48.84 E-value=53 Score=32.01 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=58.7
Q ss_pred ecCCCChHHHHHHhHhhhc-CCCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CC
Q psy16990 4 LSYDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GG 68 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa-~nf~---------l~~~L~~~f~~GLikAAqsTgAWIiT----gG 68 (250)
|--|++|.+|-++.....+ |-.|+-+|.=..|+ .||. +...+.+.+|+ ++..+.+...-+++ ||
T Consensus 63 v~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~-~~E~cD~l~gf~~~~sl~GG 141 (425)
T cd02187 63 ILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK-EAESCDCLQGFQLTHSLGGG 141 (425)
T ss_pred eeccCChhhhhhhhcCcccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHH-hhccCCCcceEEEEeecCCC
Confidence 4468899999988765443 44555555544455 3332 22344555555 55556666666665 67
Q ss_pred cccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 69 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 69 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+-+|+.-.+-++++|.-.+ .-+.+++|.|-
T Consensus 142 TGSG~gs~l~e~l~d~y~~--~~~~~~~V~P~ 171 (425)
T cd02187 142 TGSGMGTLLISKIREEYPD--RIMATFSVFPS 171 (425)
T ss_pred ccccHHHHHHHHHHHhcCC--cceEEEEEecC
Confidence 7789999999999985321 12667777773
No 17
>PTZ00010 tubulin beta chain; Provisional
Probab=47.89 E-value=53 Score=32.30 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=59.5
Q ss_pred ecCCCChHHHHHHhHhhhc-CCCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CC
Q psy16990 4 LSYDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GG 68 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa-~nf~---------l~~~L~~~f~~GLikAAqsTgAWIiT----gG 68 (250)
|--|++|.+|-++.....+ |-.|+-+|+=..|+ .||. +...+.+.+|+ .+..+.+..+-+|+ ||
T Consensus 64 v~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk-~~E~cd~l~gf~i~~Sl~GG 142 (445)
T PTZ00010 64 VLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK-EAESCDCLQGFQITHSLGGG 142 (445)
T ss_pred eeccCChhhhhhhcccchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhh-hhhhccCccceEEEeccCCC
Confidence 3468899999888765543 33455444444444 4443 22344555666 55666677666665 68
Q ss_pred cccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 69 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 69 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
|-+|+.-.+-+.++|.=.+ .-+..++|-|-
T Consensus 143 TGSGlgs~l~e~L~dey~~--~~~~~~~v~P~ 172 (445)
T PTZ00010 143 TGSGMGTLLISKLREEYPD--RIMMTFSVFPS 172 (445)
T ss_pred ccccHHHHHHHHHHhhCCc--cceeeeEecCC
Confidence 8899999999999985321 12567777664
No 18
>PTZ00387 epsilon tubulin; Provisional
Probab=47.82 E-value=59 Score=32.31 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCCChHHHHHHhHhhhc-CCCCCeEEEEecCC-CCCCCc-----HHH----HHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy16990 6 YDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFELQ-----PKL----KKVLRKGLLKAAKTTGAWVFT----GGTN 70 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa-~nf~l~-----~~L----~~~f~~GLikAAqsTgAWIiT----gG~~ 70 (250)
-|++|.+|-+++...++ +=.|+-+|+=..|+ .||..- +.+ .+.+|+ .+..+.+...-+|+ |||-
T Consensus 67 vD~Ep~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~-~~E~cD~l~gf~i~~slgGGTG 145 (465)
T PTZ00387 67 VDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRR-QVEQCDSLQSFFLMHSLGGGTG 145 (465)
T ss_pred cCCCccHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHH-HHHhccCcceEEEEeecCCCcc
Confidence 58899999999876543 33455455444555 456533 344 444444 44444444444554 6888
Q ss_pred cchhhHHHHHhhhhhccCCCceEEEeecc
Q psy16990 71 TGVTRQVGDALLMERSQRSGRVVSIGIAP 99 (250)
Q Consensus 71 ~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 99 (250)
+|+.-.+-++++|.-.+ .-+.++.|-|
T Consensus 146 SGlgs~lle~l~d~y~~--~~~~~~~V~P 172 (465)
T PTZ00387 146 SGLGTRILGMLEDEFPH--VFRFCPVVFP 172 (465)
T ss_pred hhHHHHHHHHHHHhccc--CceeeeEecC
Confidence 99999999999985321 1234555555
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=43.94 E-value=51 Score=28.68 Aligned_cols=95 Identities=22% Similarity=0.316 Sum_probs=60.3
Q ss_pred ecCCCChHHHHHHhHhhh-cCCCCCeEEEEe-cCCCCCCCcHH-----HHHHHHHHHHHHh---hhcCcEEEe----CCc
Q psy16990 4 LSYDTRPENILQLFTREW-SLELPKLLITVQ-GGKANFELQPK-----LKKVLRKGLLKAA---KTTGAWVFT----GGT 69 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W-~L~~P~LVISV~-GGa~nf~l~~~-----L~~~f~~GLikAA---qsTgAWIiT----gG~ 69 (250)
+.-||+|.++-++....- .+-.|+-+++=. |-..|+.+-.. +.+....-|-+.+ .....-+|+ |||
T Consensus 58 i~iDtd~~~l~~i~~~~~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGT 137 (216)
T PF00091_consen 58 IAIDTDPKVLDEIRASPKRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGT 137 (216)
T ss_dssp EEEESSHHHHHHHHTSEETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccceeccccccee
Confidence 346899999999875432 456677777766 44455664433 3222222244444 666665554 788
Q ss_pred ccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 70 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 70 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
=+|+.-++.+.+++.- ....+.++.|-|.
T Consensus 138 GSG~~~~l~~~l~~~y--~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 138 GSGLGPVLAEMLREEY--PKKPIISFSILPF 166 (216)
T ss_dssp HHHHHHHHHHHHHHTS--TTSEEEEEEEE-C
T ss_pred ccccccccchhhhccc--cccceeecccccc
Confidence 8899999999999752 1225678888887
No 20
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=36.67 E-value=1.1e+02 Score=29.15 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=58.9
Q ss_pred cCCCChHHHHHHhHhhhc-CCCCCeEEEEecCCCC-CC-----CcHHHHHHHHHHHHHHhhhcCc---EEEe----CCcc
Q psy16990 5 SYDTRPENILQLFTREWS-LELPKLLITVQGGKAN-FE-----LQPKLKKVLRKGLLKAAKTTGA---WVFT----GGTN 70 (250)
Q Consensus 5 s~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa~n-f~-----l~~~L~~~f~~GLikAAqsTgA---WIiT----gG~~ 70 (250)
-.|++|.++-+++....+ +-.|+-+++-..|+.| +. .-+...+.+..-|-|.++..+. -+|+ ||+-
T Consensus 24 ~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTG 103 (382)
T cd06059 24 LVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTG 103 (382)
T ss_pred cccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcc
Confidence 458999999888876553 4456667776666655 31 2234444444445555555543 3443 5788
Q ss_pred cchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 71 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 71 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+|+.-.+-+.++|.-. ..-+.+++|.|-
T Consensus 104 SG~gs~l~e~l~d~y~--~~~i~~~~v~P~ 131 (382)
T cd06059 104 SGLGSLLLELLSDEYP--KILINTFSIFPS 131 (382)
T ss_pred hhHHHHHHHHHHHhcC--ccceEeEEEecc
Confidence 9999999999998532 123566666664
No 21
>KOG2170|consensus
Probab=36.37 E-value=34 Score=32.73 Aligned_cols=27 Identities=15% Similarity=0.484 Sum_probs=22.6
Q ss_pred HHHHHHhHhhhcCCCCC--eEEEEecCCC
Q psy16990 11 ENILQLFTREWSLELPK--LLITVQGGKA 37 (250)
Q Consensus 11 ~~i~~Ll~~~W~L~~P~--LVISV~GGa~ 37 (250)
+.|...|..+|.=+.|+ ||+|.+|++.
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tG 120 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTG 120 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCC
Confidence 56778899999987775 9999999873
No 22
>PLN00221 tubulin alpha chain; Provisional
Probab=35.36 E-value=1e+02 Score=30.35 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=60.7
Q ss_pred CCCChHHHHHHhHhhh-cCCCCCeEEEEecCCCC-CC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy16990 6 YDTRPENILQLFTREW-SLELPKLLITVQGGKAN-FE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GGTN 70 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W-~L~~P~LVISV~GGa~n-f~---------l~~~L~~~f~~GLikAAqsTgAWIiT----gG~~ 70 (250)
-|++|..|-+++...+ .|-.|+-+|+=..|+.| |. +...+.+.+|+ ++..+.+...-+|+ |||-
T Consensus 68 iD~e~~~i~~i~~~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~-~~E~cD~l~gf~i~~Sl~GGtG 146 (450)
T PLN00221 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK-LADNCTGLQGFLVFNAVGGGTG 146 (450)
T ss_pred CCCChhhhhhhccCccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHH-HHHhccCccceeEeeccCCCcc
Confidence 5789999999987543 35556655555555544 54 23455677777 77777777776654 7888
Q ss_pred cchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 71 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 71 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
.|+.-.+=+.++|.-.+ .-+.+..|.|-
T Consensus 147 SGlgs~~le~l~d~y~~--~~~~~~~v~P~ 174 (450)
T PLN00221 147 SGLGSLLLERLSVDYGK--KSKLGFTVYPS 174 (450)
T ss_pred chHHHHHHHHHHHhccc--ccceeeEeeCC
Confidence 99999999999985321 12344555543
No 23
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=34.49 E-value=81 Score=29.95 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=41.9
Q ss_pred ChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCccc
Q psy16990 9 RPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT 71 (250)
Q Consensus 9 ~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~ 71 (250)
.++.-++.|.+-..+.+|-+|+| ++|..++. |.+||+..+.||+++=..+
T Consensus 66 ~~~~r~~~i~~~~~~~~P~iI~s-----k~~~~p~~--------l~~~a~~~~~pil~s~~~t 115 (308)
T COG1493 66 SSEERKKRIGKLFSLDTPALIVS-----KGLPIPEE--------LLDAAKKYNIPILTSKLST 115 (308)
T ss_pred ChhhHHHHHHHHhCcCCCEEEEE-----CCCCCCHH--------HHHHHHHcCCceEEecchH
Confidence 56677788888899999999997 78887654 7889999999999986665
No 24
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=33.51 E-value=40 Score=27.87 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHhHhhhcCCCC--CeEEEEecCC
Q psy16990 11 ENILQLFTREWSLELP--KLLITVQGGK 36 (250)
Q Consensus 11 ~~i~~Ll~~~W~L~~P--~LVISV~GGa 36 (250)
+.|+..+..+|.-+.| -||+|.+|..
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~t 62 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWT 62 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCC
Confidence 4677778888875333 3999999965
No 25
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=32.23 E-value=2.6e+02 Score=25.76 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=54.5
Q ss_pred ecCCCChHHHHHHhHhhhcC-CCCCeEEEEecCC-CCCC---------CcHHHHHHHHHHHHHHhhhcCcEEEe----CC
Q psy16990 4 LSYDTRPENILQLFTREWSL-ELPKLLITVQGGK-ANFE---------LQPKLKKVLRKGLLKAAKTTGAWVFT----GG 68 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~L-~~P~LVISV~GGa-~nf~---------l~~~L~~~f~~GLikAAqsTgAWIiT----gG 68 (250)
+.-||+|.++-++....... -.|.-+++=-.|+ .||. ....+.+.+|+ ++..+.+...-+|+ ||
T Consensus 23 v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~-~~E~cD~~~gf~i~~slgGG 101 (328)
T cd00286 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRK-EAEECDSLQGFFITHSLGGG 101 (328)
T ss_pred heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHH-HHHhCCCccceEEEeecCCC
Confidence 45689999998887654321 2233333322234 3342 22333444544 55555556554443 67
Q ss_pred cccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 69 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 69 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+-+|+.-.+-+.++|.-.+ .-+.++.|-|-
T Consensus 102 TGsG~~~~i~e~l~d~y~~--~~~~~~~v~P~ 131 (328)
T cd00286 102 TGSGLGPVLAERLKDEYPK--RLKITFSILPG 131 (328)
T ss_pred ccccHHHHHHHHHHHHcCc--cceeEEEecCC
Confidence 8889999999999985321 13566677665
No 26
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=31.34 E-value=1.4e+02 Score=27.89 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcC-cEEEeCCcccchhhHHHHHhhhh
Q psy16990 23 LELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTG-AWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 23 L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTg-AWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
++.|...|-|=|-.++|.+.+..-+.+-+.|.+.++..| .|.||.--.++ ..+-+++++.
T Consensus 144 l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp--~~~~~~L~~~ 204 (311)
T PF06258_consen 144 LPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTP--PEAEAALREL 204 (311)
T ss_pred CCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCc--HHHHHHHHHh
Confidence 556665555544457899987655555555888888887 89999988885 3556666654
No 27
>PHA00026 cp coat protein
Probab=30.63 E-value=38 Score=27.32 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=23.1
Q ss_pred CCcEEEEeeCCCCCCCC-hhHHHHHHHHHHhhhc
Q psy16990 155 RHAYFLLVDNGTAGKYG-AEIILRRKLEKYISNQ 187 (250)
Q Consensus 155 nHshFlLVDdGt~g~~G-~E~~lR~~LE~~Is~q 187 (250)
|-..|+|||+|-.|.-- ....|-.-..+.||..
T Consensus 3 nf~~fvlvdnggtgdvtvapsnfangvaewis~n 36 (129)
T PHA00026 3 NFRQFVLVDNGGTGDVTVAPSNFANGVAEWISNN 36 (129)
T ss_pred cceEEEEEecCCccceEEeccccchhHHHHHhcC
Confidence 55689999999877632 3445666667778764
No 28
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=29.80 E-value=1.2e+02 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q psy16990 6 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRK 51 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~ 51 (250)
.+..++++-+++.. .|.+||-=+|-...|.+++.+++.|++
T Consensus 44 ~~l~~~~l~~ll~~-----~peivliGTG~~~~~~~~~~~~~~l~~ 84 (117)
T cd05126 44 HGLQPEELEELLEE-----GVEVIVIGTGQSGALKVPPETVEKLEK 84 (117)
T ss_pred ccCCHHHHHHHHhc-----CCCEEEEcCCCCccccCCHHHHHHHHh
Confidence 35688998888853 488776666666678889998776554
No 29
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.80 E-value=44 Score=30.20 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=31.2
Q ss_pred CcccccCCCcE------------------EEEeeCCCCC-CCChhHHH------HHHHHHHhhhc
Q psy16990 148 KFAVLNNRHAY------------------FLLVDNGTAG-KYGAEIIL------RRKLEKYISNQ 187 (250)
Q Consensus 148 ~~~~Ld~nHsh------------------FlLVDdGt~g-~~G~E~~l------R~~LE~~Is~q 187 (250)
-+.+||.+||| ++.|.|+.+. -+|.+.++ +...|.|+.+.
T Consensus 146 IfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 146 IFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred EEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence 35799999997 7888888764 57877777 57789988663
No 30
>PF03584 Herpes_ICP4_N: Herpesvirus ICP4-like protein N-terminal region; InterPro: IPR005206 The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the N-terminal region that contains sites for DNA binding and homodimerisation [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus
Probab=29.03 E-value=60 Score=28.26 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=44.1
Q ss_pred ChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHH--HHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy16990 9 RPENILQLFTREWSLELPKLLITVQGGKANFELQPKL--KKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 9 ~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L--~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
+|..-|++|.+.--. |..= +.+..+|-.|++.- .+-|++-+.-...+.|. .|||-.+..| -|||+||++.
T Consensus 58 d~~kQy~aLv~~~~~--~~~~--~m~wlq~~Kls~~d~~L~~~cqk~~~~~~~~gs-~iTGsVa~~v-PHig~AMa~g 129 (173)
T PF03584_consen 58 DPAKQYEALVRLIYT--PDRD--AMAWLQNPKLSPADQALNQFCQKFRGGGRSSGS-AITGSVARPV-PHIGDAMAAG 129 (173)
T ss_pred CHHHHHHHHHHHHhc--ccHH--HHHHhcCCCcCchHHHHHHHHHHhccCCCCCCc-eecccccCCC-CcHHHHHhcc
Confidence 566677776665433 2211 13555565666432 23355446666666677 6899999988 9999999974
No 31
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=28.79 E-value=1e+02 Score=30.50 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.6
Q ss_pred CChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCccc-chh
Q psy16990 8 TRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNT-GVT 74 (250)
Q Consensus 8 t~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~-GV~ 74 (250)
.|++.+-+++.+. .|++||+ |..+|.+.-.++ + |.+.|+..|||++-.+.|. |++
T Consensus 170 iD~d~Le~~l~~~----~pklIv~---~~S~~s~~~D~a----~-i~~ia~~~ga~LlvD~AH~~Gli 225 (475)
T PLN03226 170 IDYDKLEKKAMLF----RPKLIIA---GASAYPRDWDYA----R-MRKIADKVGALLMCDMAHISGLV 225 (475)
T ss_pred cCHHHHHHHHhhc----CCeEEEE---ecCcCCCccCHH----H-HHHHHHHcCCEEEEEchhhhCcc
Confidence 3888888888654 6887755 345677665443 2 5568889999999888776 553
No 32
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=28.79 E-value=73 Score=26.64 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=25.7
Q ss_pred CcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecc
Q psy16990 61 GAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 99 (250)
Q Consensus 61 gAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 99 (250)
|..|||||+ -|+...+.+.+..+. ..+++++|=.+
T Consensus 1 gtylitGG~-gglg~~la~~La~~~---~~~~il~~r~~ 35 (181)
T PF08659_consen 1 GTYLITGGL-GGLGQSLARWLAERG---ARRLILLGRSG 35 (181)
T ss_dssp SEEEEETTT-SHHHHHHHHHHHHTT----SEEEEEESSG
T ss_pred CEEEEECCc-cHHHHHHHHHHHHcC---CCEEEEeccCC
Confidence 568999997 578888888888654 33677777654
No 33
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=28.29 E-value=94 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=34.5
Q ss_pred eEEEEecCCCCCC--CcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhh
Q psy16990 28 LLITVQGGKANFE--LQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALL 82 (250)
Q Consensus 28 LVISV~GGa~nf~--l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~ 82 (250)
..|.||||+.+.. +++..++..+++|.+|++.--+.+--||.- +--|=.||+
T Consensus 4 ~~i~vHGGAG~~~~~~~~~~~~~~~~~l~~al~~g~~~L~~g~sa---ldAV~~av~ 57 (318)
T PLN02689 4 WAIALHGGAGDIDPNLPRERQEEAEAALRRCLDLGIAALRSSLPA---LDVVELVVR 57 (318)
T ss_pred eEEEEEcCCCCCccccCHhHHHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHH
Confidence 4789999998754 667788888998988887544444444433 234444544
No 34
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=28.16 E-value=43 Score=29.61 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=30.6
Q ss_pred CCCChHHHHHHhHhhhcC-------CCCCeEEEEecCCCCCCCcHHH
Q psy16990 6 YDTRPENILQLFTREWSL-------ELPKLLITVQGGKANFELQPKL 45 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~L-------~~P~LVISV~GGa~nf~l~~~L 45 (250)
.|...+.+|..+.+.|.- ...-.+||+.||..++.+++.+
T Consensus 130 ~d~~~~~~y~~~~~~~~~~~~~~~~~~~v~~vSi~gG~~D~~v~~~~ 176 (225)
T PF07819_consen 130 FDRSLDRFYKRLNNFWRKNYSPADSLRDVTVVSIAGGIRDTLVPSDL 176 (225)
T ss_pred chHHHHHHHHHHHHHHHHhcccccccCCceEEEecCCcccccccccc
Confidence 445567788889899986 2355689999999998887664
No 35
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=27.49 E-value=1.9e+02 Score=24.88 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 44 KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 44 ~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
.|+..+++=|.++.+.==-|+|||| ..||=-..+++|.+-...- ..+-++=|.|.
T Consensus 26 ~ik~~L~~~i~~lie~G~~~fi~Gg-alG~D~waae~vl~LK~~y-p~ikL~~v~Pf 80 (177)
T PF06908_consen 26 VIKKALKKQIIELIEEGVRWFITGG-ALGVDLWAAEVVLELKKEY-PEIKLALVLPF 80 (177)
T ss_dssp HHHHHHHHHHHHHHTTT--EEEE----TTHHHHHHHHHHTTTTT--TT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECC-cccHHHHHHHHHHHHHhhh-hheEEEEEEcc
Confidence 4677788877778877667999999 7899999999998754221 24556666664
No 36
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=26.65 E-value=2.1e+02 Score=23.73 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCCCCcH---HHHHHHHHHHHHHhhhcCcEEEeCCccc
Q psy16990 27 KLLITVQGGKANFELQP---KLKKVLRKGLLKAAKTTGAWVFTGGTNT 71 (250)
Q Consensus 27 ~LVISV~GGa~nf~l~~---~L~~~f~~GLikAAqsTgAWIiTgG~~~ 71 (250)
.--|+++||.- +. ++ .+.+++++ +-+.+.....|+.||=+-.
T Consensus 66 ~~gvt~sGGEP-l~-~~~~~~l~~l~~~-~k~~~~~~~i~~~tGy~~e 110 (154)
T PRK11121 66 RQGLSLSGGDP-LH-PQNVPDILKLVQR-VKAECPGKDIWVWTGYKLD 110 (154)
T ss_pred CCcEEEECCCc-cc-hhhHHHHHHHHHH-HHHHCCCCCEEEecCCCHH
Confidence 34578899965 32 22 23333333 1111223588987665543
No 37
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=26.25 E-value=2.3e+02 Score=26.31 Aligned_cols=81 Identities=25% Similarity=0.294 Sum_probs=53.7
Q ss_pred hHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcH---HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhc
Q psy16990 10 PENILQLFTREWSLELPKLLITVQGGKANFELQP---KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERS 86 (250)
Q Consensus 10 p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~---~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s 86 (250)
++.+..| .+.|. +.|.+.|.|-=|.+...+.. .+-..|.++|-.+==+.+.=||--.-.++++-.||+++.-..
T Consensus 96 ~~s~~~L-~~~~~-~~~Dv~iViaDGLSa~Av~~na~~~l~al~~~L~~~g~~iap~v~~~qgRValgD~Ige~L~ar~- 172 (260)
T PRK05465 96 DESREAL-KAQCG-KNPDVQIVVADGLSALAVEANAEPLLPALLAGLKAAGWSVGPPVFVRQGRVALGDEIGELLGAKV- 172 (260)
T ss_pred HHHHHHH-HHhcC-CCCcEEEEEcCCCCHHHHHHhHHHHHHHHHHHHHHcCCCcCCeEEEecCeehHHHHHHHHhCCCE-
Confidence 3444333 33344 68999999999998777663 445566776733324666667777779999999999996321
Q ss_pred cCCCceEEEee
Q psy16990 87 QRSGRVVSIGI 97 (250)
Q Consensus 87 ~~~~kv~~IGI 97 (250)
-+++||=
T Consensus 173 ----vvvLIGE 179 (260)
T PRK05465 173 ----VVVLIGE 179 (260)
T ss_pred ----EEEEEec
Confidence 2556663
No 38
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.22 E-value=1.2e+02 Score=24.67 Aligned_cols=32 Identities=9% Similarity=0.262 Sum_probs=25.4
Q ss_pred EeecCCCChHHHHHHhHhhhcC-----CCCCeEEEEe
Q psy16990 2 VRLSYDTRPENILQLFTREWSL-----ELPKLLITVQ 33 (250)
Q Consensus 2 iRls~dt~p~~i~~Ll~~~W~L-----~~P~LVISV~ 33 (250)
||+|+++.-..|.++|.++... ..|+..|=.+
T Consensus 40 VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYev 76 (112)
T cd01782 40 IRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEV 76 (112)
T ss_pred EEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEE
Confidence 7999999999999999999983 4677655433
No 39
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.17 E-value=2.7e+02 Score=26.16 Aligned_cols=62 Identities=16% Similarity=0.320 Sum_probs=42.7
Q ss_pred CEeecCCCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEe
Q psy16990 1 YVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFT 66 (250)
Q Consensus 1 yiRls~dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiT 66 (250)
||...+-.+|.++.+.+.+....+-|.+|++..==...+...+.. .. =+.|.|-.||.|.+=
T Consensus 174 yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~spC~~~~~~~~~~--~~--~~~k~Av~tg~wply 235 (300)
T PRK11864 174 YVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAPCPPGWRFDPDK--TI--EIARLAVETGVWPLF 235 (300)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCCcChHH--HH--HHHHHHHHcCCceEE
Confidence 454445568899999999988888999999887655554443332 11 256678888988753
No 40
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.37 E-value=2.1e+02 Score=22.49 Aligned_cols=59 Identities=27% Similarity=0.406 Sum_probs=39.2
Q ss_pred CCCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhh
Q psy16990 6 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMER 85 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~ 85 (250)
.+.+++++..++... .|.+||-=+|.... .+++.+++.|++ -|+..=+| -.++|++.+.
T Consensus 37 ~~l~~~~l~~~~~~~----~peiliiGTG~~~~-~~~~~~~~~l~~---------------~gI~vE~m-~T~aAcrTyN 95 (109)
T cd00248 37 SDLDPEALLPLLAED----RPDILLIGTGAEIA-FLPRALRAALRA---------------AGIGVEVM-STGAACRTYN 95 (109)
T ss_pred ccCCHHHHHHHHhhC----CCCEEEEcCCCCCC-cCCHHHHHHHHH---------------cCCeEEEe-CcHHHHHHHH
Confidence 467888888887653 58888777777664 467888777666 23344443 3457777663
No 41
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=21.48 E-value=5e+02 Score=24.61 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=52.7
Q ss_pred ecCCCChHHHHHHhHhhhcCCCCCeEEEEe-----cCC-CCCCCcHHHHHHHHHHHHHHhhh-----cCcEEEe----CC
Q psy16990 4 LSYDTRPENILQLFTREWSLELPKLLITVQ-----GGK-ANFELQPKLKKVLRKGLLKAAKT-----TGAWVFT----GG 68 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~L~~P~LVISV~-----GGa-~nf~l~~~L~~~f~~GLikAAqs-----TgAWIiT----gG 68 (250)
+.-||++.++-.+-. ++.|+-++.=- -|+ .++++-..+-+.-..-+.++++. +..-+|| ||
T Consensus 35 iavntD~~~L~~l~~----~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGG 110 (349)
T cd02202 35 LAINTAKNDLKGLKH----IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGG 110 (349)
T ss_pred EEEECCHHHHHhhhc----CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCC
Confidence 455889888876643 45666554421 122 34444444433323336666665 5444444 68
Q ss_pred cccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 69 TNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 69 ~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
|-+|..-.+.+++++.-. .-++++.+-|.
T Consensus 111 TGsG~~p~iae~lke~~~---~~~~~iv~~P~ 139 (349)
T cd02202 111 TGSGGAPVLAKELKERYE---EPVYALGVLPA 139 (349)
T ss_pred ccccHHHHHHHHHHHhCC---ccEEEEEEecC
Confidence 889999999999997422 12456666554
No 42
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=21.46 E-value=73 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.9
Q ss_pred eecCCCChHHHHHHhHhhhcCCCCC
Q psy16990 3 RLSYDTRPENILQLFTREWSLELPK 27 (250)
Q Consensus 3 Rls~dt~p~~i~~Ll~~~W~L~~P~ 27 (250)
+++.|.+...++.+|.++|+|..+.
T Consensus 81 ~~a~DrPS~Kll~Fl~Khy~L~~~i 105 (120)
T PF05301_consen 81 QLAIDRPSPKLLSFLKKHYGLQRYI 105 (120)
T ss_pred cceecCCcHHHHHHHHHhcCCCcCC
Confidence 4678999999999999999998764
No 43
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=20.90 E-value=1.1e+02 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.4
Q ss_pred cEEEeCCcccchhhHHHHHhhhh
Q psy16990 62 AWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 62 AWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
.+|||||. .||.+.+.+++-.+
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~ 23 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARR 23 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHT
T ss_pred EEEEECCC-CHHHHHHHHHHHhc
Confidence 47899998 58888888888764
No 44
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=20.13 E-value=81 Score=29.20 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcc
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTN 70 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~ 70 (250)
.|.||||+.+. ++..++..+++|-+|++..-+++-.||.-
T Consensus 3 ~i~vHgGAG~~--~~~~~~~~~~~~~~a~~~~~~~L~~g~sa 42 (261)
T cd04702 3 VIIVHGGAGTI--PDERVAEKIAGVKAAAEAGYKVLEQGGSA 42 (261)
T ss_pred EEEEEcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 58899999875 55677788888888887655555555543
Done!