Query psy16990
Match_columns 250
No_of_seqs 181 out of 276
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:53:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbx_A Putative uncharacterize 95.7 0.03 1E-06 47.7 7.7 68 24-100 10-77 (189)
2 3qua_A Putative uncharacterize 95.4 0.047 1.6E-06 46.9 7.8 67 26-101 21-87 (199)
3 2iz6_A Molybdenum cofactor car 94.0 0.16 5.6E-06 42.5 7.6 71 22-100 8-78 (176)
4 1ydh_A AT5G11950; structural g 93.8 0.17 5.7E-06 43.8 7.5 63 29-99 11-73 (216)
5 2a33_A Hypothetical protein; s 92.1 0.57 1.9E-05 40.4 8.4 66 27-100 13-78 (215)
6 1t35_A Hypothetical protein YV 91.7 0.46 1.6E-05 40.0 7.3 65 29-101 3-67 (191)
7 1weh_A Conserved hypothetical 90.2 0.85 2.9E-05 37.7 7.4 62 29-99 3-64 (171)
8 1rcu_A Conserved hypothetical 88.3 1.1 3.6E-05 38.2 6.8 64 29-100 25-90 (195)
9 1wek_A Hypothetical protein TT 86.4 2.1 7E-05 36.9 7.5 54 28-84 38-91 (217)
10 3bq9_A Predicted rossmann fold 83.4 7.1 0.00024 37.4 10.4 64 29-99 147-213 (460)
11 3gh1_A Predicted nucleotide-bi 70.4 26 0.00088 33.6 10.0 82 11-99 129-215 (462)
12 2ab1_A Hypothetical protein; H 50.6 36 0.0012 26.4 6.1 59 6-85 47-105 (122)
13 2nx2_A Hypothetical protein YP 48.5 44 0.0015 27.5 6.7 54 43-99 26-80 (181)
14 1k2x_A Putative L-asparaginase 48.1 15 0.00051 30.7 3.7 31 29-59 4-37 (177)
15 2gez_A L-asparaginase alpha su 46.6 15 0.00052 31.2 3.6 32 28-59 7-40 (195)
16 1msc_A Bacteriophage MS2 coat 34.2 18 0.00063 28.0 1.9 16 154-169 2-17 (129)
17 3o38_A Short chain dehydrogena 32.9 32 0.0011 28.6 3.5 24 61-84 23-46 (266)
18 3abq_B Ethanolamine ammonia-ly 27.7 99 0.0034 28.0 5.8 65 19-83 163-230 (306)
19 1una_A GA unassembled coat pro 27.1 29 0.00098 26.9 1.9 15 155-169 2-16 (129)
20 2bto_A Tubulin btuba; bacteria 24.8 2E+02 0.0068 27.2 7.7 95 4-100 69-176 (473)
21 3ryc_A Tubulin alpha chain; al 24.3 68 0.0023 30.4 4.4 92 6-100 68-174 (451)
22 2pjk_A 178AA long hypothetical 23.2 84 0.0029 25.6 4.2 38 47-84 67-106 (178)
23 3c17_A L-asparaginase precurso 22.7 49 0.0017 30.0 2.9 31 29-59 4-37 (320)
24 2cxa_A Leucyl/phenylalanyl-tRN 22.2 82 0.0028 27.9 4.1 59 3-65 45-130 (256)
25 3ek2_A Enoyl-(acyl-carrier-pro 21.6 72 0.0024 26.2 3.6 23 61-83 15-38 (271)
26 1ts9_A Ribonuclease P protein 21.3 40 0.0014 25.6 1.7 40 21-64 63-102 (102)
27 2btq_B Tubulin btubb; structur 20.3 1.9E+02 0.0065 26.9 6.5 95 4-100 65-173 (426)
28 3pzy_A MOG; ssgcid, seattle st 20.1 99 0.0034 24.8 4.0 66 6-84 25-91 (164)
No 1
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=95.69 E-value=0.03 Score=47.68 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=49.5
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 24 ELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 24 ~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+.++.-|+|.||++ ...+...+.-++ |-++.-..|--|||||-..|||..+.++..+.. + ..|||-|-
T Consensus 10 ~~~~~~I~Vfg~s~--~~~~~~~~~A~~-lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~G----G--~viGv~p~ 77 (189)
T 3sbx_A 10 EPGRWTVAVYCAAA--PTHPELLELAGA-VGAAIAARGWTLVWGGGHVSAMGAVSSAARAHG----G--WTVGVIPK 77 (189)
T ss_dssp ---CCEEEEECCSS--CCCHHHHHHHHH-HHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTT----C--CEEEEEET
T ss_pred CCCCeEEEEEEeCC--CCChHHHHHHHH-HHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC----C--cEEEEcCc
Confidence 35668899999998 555665555555 555555568899999999999999999998643 2 35777654
No 2
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=95.39 E-value=0.047 Score=46.88 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecccc
Q psy16990 26 PKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 101 (250)
Q Consensus 26 P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 101 (250)
.+.-|+|.||++ ...+...+.-++ |-++.-..|--|||||-..|||..+.++..+... .+|||-|-.
T Consensus 21 ~~~~v~Vfggs~--~~~~~~~~~A~~-lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~GG------~viGv~p~~ 87 (199)
T 3qua_A 21 RQWAVCVYCASG--PTHPELLELAAE-VGSSIAARGWTLVSGGGNVSAMGAVAQAARAKGG------HTVGVIPKA 87 (199)
T ss_dssp CCCEEEEECCSS--CCCHHHHHHHHH-HHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTTC------CEEEEEEGG
T ss_pred CCCEEEEEECCC--CCCHHHHHHHHH-HHHHHHHCCCEEEECCCccCHHHHHHHHHHHcCC------cEEEEeCch
Confidence 346899999998 556666665555 5556555688899999999999999999986532 357776553
No 3
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=93.97 E-value=0.16 Score=42.52 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=48.8
Q ss_pred cCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 22 SLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 22 ~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
.++.....|+|+|+.. ....+...+.-++ |.+.....|--|||||-+.|||..+.++..+.. + .+|||-|-
T Consensus 8 ~~~~~~~~VaV~Gs~~-~g~~~~~~~~A~~-lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~g----G--~tigVlP~ 78 (176)
T 2iz6_A 8 CMSGRKPIIGVMGPGK-ADTAENQLVMANE-LGKQIATHGWILLTGGRSLGVMHEAMKGAKEAG----G--TTIGVLPG 78 (176)
T ss_dssp ---CCCCEEEEECCCG-GGCCHHHHHHHHH-HHHHHHHTTCEEEEECSSSSHHHHHHHHHHHTT----C--CEEEEECC
T ss_pred cccCCCCeEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHCCCEEEECCCccCHhHHHHHHHHHcC----C--EEEEEeCc
Confidence 3556667899999776 2334555555444 555555569999999999999999999998743 2 35777553
No 4
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=93.78 E-value=0.17 Score=43.83 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=45.7
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecc
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 99 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 99 (250)
.|+|.||++.-. .+...+.-++ |-+..-..|.-|||||-..|||..+.++..+... .+|||-|
T Consensus 11 ~V~V~ggsr~~~-~~~~~~~A~~-lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG------~~iGv~p 73 (216)
T 1ydh_A 11 KICVFCGSHSGH-REVFSDAAIE-LGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL------HVLGIIP 73 (216)
T ss_dssp EEEEECCSCCCS-SHHHHHHHHH-HHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC------CEEEEEE
T ss_pred eEEEEeCCCCCC-CcHHHHHHHH-HHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCC------cEEEEec
Confidence 799999988643 3344444444 5555555699999999999999999999986532 3677765
No 5
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=92.10 E-value=0.57 Score=40.37 Aligned_cols=66 Identities=20% Similarity=0.122 Sum_probs=46.0
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 27 KLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 27 ~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
.-.|+|++|+.+-.- +...+.-++ |-+.....|--|||||-..|||..+.++..+.. + .+|||-|-
T Consensus 13 m~~IaV~cGS~~~~~-~~y~~~A~~-lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~G----G--~tiGVlP~ 78 (215)
T 2a33_A 13 FRRICVFCGSSQGKK-SSYQDAAVD-LGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG----R--HVIGIIPK 78 (215)
T ss_dssp CSEEEEECCSSCCSS-HHHHHHHHH-HHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTT----C--CEEEEEES
T ss_pred CCeEEEEECCCCCCc-hHHHHHHHH-HHHHHHHCCCEEEECCChhhHhHHHHHHHHHcC----C--cEEEEcch
Confidence 347999988887553 333343333 555544569999999999999999999988643 2 35777554
No 6
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=91.74 E-value=0.46 Score=40.04 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=44.8
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecccc
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWG 101 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApWG 101 (250)
.|+|.||++.-. .+...+.-++ |-+..-..|.-|||||-..|||..+.++..+... .+|||-|=+
T Consensus 3 ~V~V~gss~~~~-~~~~~~~A~~-lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~gG------~~iGv~p~~ 67 (191)
T 1t35_A 3 TICVFAGSNPGG-NEAYKRKAAE-LGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGG------TAIGVMPSG 67 (191)
T ss_dssp EEEEECCSSCCS-STHHHHHHHH-HHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTTC------CEEEEEETT
T ss_pred EEEEEECCCCCC-ChHHHHHHHH-HHHHHHHCCCEEEECCCcccHHHHHHHHHHHcCC------eEEEEeCch
Confidence 489999887422 3333444344 4445444699999999999999999999987532 357775543
No 7
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=90.22 E-value=0.85 Score=37.68 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=42.7
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecc
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 99 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 99 (250)
.|+|+|+++.-. .+...+.-++ |-+.....|--|||||-. |||..+.++..+.. + .+|||-|
T Consensus 3 ~V~V~gs~~~~~-~~~~~~~A~~-lg~~La~~g~~lV~Ggg~-GiM~aa~~gAl~~g----G--~tiGV~~ 64 (171)
T 1weh_A 3 LLAVFVSSRLSP-EDPLYARWVR-YGEVLAEEGFGLACGGYQ-GGMEALARGVKAKG----G--LVVGVTA 64 (171)
T ss_dssp EEEEECCSSCCT-TSHHHHHHHH-HHHHHHHTTEEEEECCSS-THHHHHHHHHHHTT----C--CEEECCC
T ss_pred EEEEEeCCCCCC-CcHHHHHHHH-HHHHHHHCCCEEEeCChh-hHHHHHHHHHHHcC----C--cEEEEec
Confidence 589999887633 2233344333 444544569999999997 99999999998643 2 3577754
No 8
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=88.34 E-value=1.1 Score=38.18 Aligned_cols=64 Identities=23% Similarity=0.346 Sum_probs=42.0
Q ss_pred EEEEecCCCCCCCc--HHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 29 LITVQGGKANFELQ--PKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 29 VISV~GGa~nf~l~--~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
.|+|+|+.+...-. ....+.-++ |-+.....|--|||| ...|||..+.++..+.. + .+|||-|-
T Consensus 25 ~IaV~Gss~~~~~~~~~~~~~~A~~-lg~~LA~~G~~vVsG-g~~GiM~aa~~gAl~~G----G--~~iGVlP~ 90 (195)
T 1rcu_A 25 KVVVVGYSGPVNKSPVSELRDICLE-LGRTLAKKGYLVFNG-GRDGVMELVSQGVREAG----G--TVVGILPD 90 (195)
T ss_dssp EEEEEECCSCTTSTTTGGGHHHHHH-HHHHHHHTTCEEEEC-CSSHHHHHHHHHHHHTT----C--CEEEEEST
T ss_pred eEEEEecCCCCCccccHHHHHHHHH-HHHHHHHCCCEEEeC-CHHHHHHHHHHHHHHcC----C--cEEEEeCC
Confidence 69999998652110 033333333 444444469999996 57899999999998643 2 36777654
No 9
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=86.39 E-value=2.1 Score=36.88 Aligned_cols=54 Identities=26% Similarity=0.197 Sum_probs=38.5
Q ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhh
Q psy16990 28 LLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 28 LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
..|+|.||++.-.-+ ...+.-++ |-+..-..|.-|||||- .|||..+.++..+.
T Consensus 38 ~~VaV~Gss~~~~~~-~~~~~A~~-lg~~La~~g~~lVsGGg-~GiM~aa~~gAl~~ 91 (217)
T 1wek_A 38 PLVSVFGSARFGEGH-PAYEAGYR-LGRALAEAGFGVVTGGG-PGVMEAVNRGAYEA 91 (217)
T ss_dssp CEEEEECCSSCCTTS-HHHHHHHH-HHHHHHHHTCEEEECSC-SHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCCc-HHHHHHHH-HHHHHHHCCCEEEeCCh-hhHHHHHHHHHHHc
Confidence 479999998764322 33333333 44454456999999999 99999999999864
No 10
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=83.44 E-value=7.1 Score=37.45 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=41.0
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchh-hHHHHHhhhhhcc--CCCceEEEeecc
Q psy16990 29 LITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVT-RQVGDALLMERSQ--RSGRVVSIGIAP 99 (250)
Q Consensus 29 VISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~-k~VG~Av~d~~s~--~~~kv~~IGIAp 99 (250)
++++.||+.. .+...+.-++ |-++.-..|--|||||-. |+| -.+..|+..++.+ ..++ .|||-|
T Consensus 147 ivVv~GSs~~---~~~~Ye~A~e-LGr~LA~~G~~LVtGGG~-GlMEaa~aGA~~a~s~qr~~GG~--vIGIiP 213 (460)
T 3bq9_A 147 MVVCWGGHSI---NEIEYKYTKD-VGYHIGLRGLNICTGCGP-GAMKGPMKGATIGHAKQRVEGGR--YLGLTE 213 (460)
T ss_dssp EEEEECCSSC---CHHHHHHHHH-HHHHHHHTTCEEEECCSS-GGGTHHHHHHHHHHHHTTCSSCC--EEEEEC
T ss_pred EEEEEcCCCC---CCHHHHHHHH-HHHHHHHCCCEEEeCCcH-HHhhHHHhhHHhhcccccCCCCE--EEEEeC
Confidence 6777887763 3333333333 444444579999999997 999 7788888764321 2344 578744
No 11
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=70.40 E-value=26 Score=33.61 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHhHhhhcC--CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhH-HHHHhhhhhcc
Q psy16990 11 ENILQLFTREWSL--ELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQ-VGDALLMERSQ 87 (250)
Q Consensus 11 ~~i~~Ll~~~W~L--~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~-VG~Av~d~~s~ 87 (250)
..++++|.+.=-| ....-|+++.|++.. .+...+.-++ |-++.-..|--|||||- .|+|.. +..|+..+...
T Consensus 129 ~~vf~~Lrna~~~~p~r~~~IvV~cGSs~~---~p~yye~A~e-LGr~LA~~G~~LVtGGG-~GLMeAa~aGA~~a~a~q 203 (462)
T 3gh1_A 129 NLVFGILRNAGALIPGATPNLVVCWGGHSI---NEVEYQYTRE-VGHELGLRELNICTGCG-PGAMEGPMKGAAVGHAKQ 203 (462)
T ss_dssp HHHHHHHHHTTCCCTTCCSCEEEEECCSSC---CHHHHHHHHH-HHHHHHHTTCEEEECCS-SGGGTHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccCCCCCCCEEEEECCCCC---CHHHHHHHHH-HHHHHHHCCCEEEeCCc-HHHHHHHHHHHHHhcccc
Confidence 4556667543222 223345556776662 4444444444 55555557889999999 999974 55555543211
Q ss_pred --CCCceEEEeecc
Q psy16990 88 --RSGRVVSIGIAP 99 (250)
Q Consensus 88 --~~~kv~~IGIAp 99 (250)
..++ .|||-|
T Consensus 204 r~aGG~--vIGIiP 215 (462)
T 3gh1_A 204 RYSEYR--YLGLTE 215 (462)
T ss_dssp TCTTCC--EEEEEC
T ss_pred ccCCCe--EEEEcc
Confidence 2344 577764
No 12
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=50.58 E-value=36 Score=26.45 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=44.3
Q ss_pred CCCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhhhh
Q psy16990 6 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLMER 85 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d~~ 85 (250)
.|.+++++-.|+. +.|.+||-=+|-...|.+++.+++.|++ -|+..=+| -.+.|+|.+.
T Consensus 47 ~~l~~~~l~~ll~-----~~~evliiGtG~~~~~~~~~~~~~~l~~---------------~gI~ve~m-~T~~A~rtyN 105 (122)
T 2ab1_A 47 PGVQPADVKEVVE-----KGVQTLVIGRGMSEALKVPSSTVEYLKK---------------HGIDVRVL-QTEQAVKEYN 105 (122)
T ss_dssp SCCCHHHHHHHHT-----TCCSEEEEEECSSCCSCCCHHHHHHHHH---------------TTCEEEEE-CHHHHHHHHH
T ss_pred hHCCHHHHHHHhh-----CCCCEEEECCCCCCccCCCHHHHHHHHH---------------cCCEEEEe-CHHHHHHHHH
Confidence 4578888888865 4699999999988888899999887776 34444454 4677888764
No 13
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=48.48 E-value=44 Score=27.52 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhhcC-cEEEeCCcccchhhHHHHHhhhhhccCCCceEEEeecc
Q psy16990 43 PKLKKVLRKGLLKAAKTTG-AWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAP 99 (250)
Q Consensus 43 ~~L~~~f~~GLikAAqsTg-AWIiTgG~~~GV~k~VG~Av~d~~s~~~~kv~~IGIAp 99 (250)
..+++.+++=|..+.+. | .|+|||| +.|+=...++++.+..... ..+.++=|-|
T Consensus 26 ~~ik~~L~~~l~~l~~~-G~~~~isgg-a~G~D~~aae~vl~lk~~y-~~i~L~~v~P 80 (181)
T 2nx2_A 26 YYIKKAIKNRLIAFLDE-GLEWILISG-QLGVELWAAEAAYDLQEEY-PDLKVAVITP 80 (181)
T ss_dssp HHHHHHHHHHHHHHHTT-TCCEEEECC-CTTHHHHHHHHHHTTTTTC-TTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHhC-CCcEEEECC-CccHHHHHHHHHHHhcccc-CCceEEEEec
Confidence 35667777766665543 6 7999987 5699999999998854222 2345555555
No 14
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Probab=48.12 E-value=15 Score=30.70 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=24.5
Q ss_pred EEEEecCCCCCC---CcHHHHHHHHHHHHHHhhh
Q psy16990 29 LITVQGGKANFE---LQPKLKKVLRKGLLKAAKT 59 (250)
Q Consensus 29 VISV~GGa~nf~---l~~~L~~~f~~GLikAAqs 59 (250)
+|.|||||.+.. |++..++..+++|..|++.
T Consensus 4 ~i~iHGGAG~~~~~~~~~~~~~~~~~~l~~a~~~ 37 (177)
T 1k2x_A 4 VIAIHGGAGAISRAQMSLQQELRYIEALSAIVET 37 (177)
T ss_dssp EEEEEEEEECCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 789999998873 6777777788888777764
No 15
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding, hydrolase; 2.60A {Lupinus luteus}
Probab=46.65 E-value=15 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=25.0
Q ss_pred eEEEEecCCCCCC--CcHHHHHHHHHHHHHHhhh
Q psy16990 28 LLITVQGGKANFE--LQPKLKKVLRKGLLKAAKT 59 (250)
Q Consensus 28 LVISV~GGa~nf~--l~~~L~~~f~~GLikAAqs 59 (250)
.+|.|||||.++. +++...+..+++|.+|++.
T Consensus 7 ~~i~IHGGAG~i~~~~~~~~~~~~~~~l~~a~~~ 40 (195)
T 2gez_A 7 WSIALHGGAGDIPFSLPPERRKPREEGLRHCLQI 40 (195)
T ss_dssp CEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4899999999863 7777777778877777664
No 16
>1msc_A Bacteriophage MS2 coat protein; translation repressor, viral protein; 2.00A {Enterobacterio phage MS2} SCOP: d.85.1.1 PDB: 2bu1_A* 1u1y_A 1zdi_A 1zdj_A 1zdk_A 1zdh_A* 2c4q_A* 2c4y_A* 2c4z_A* 2c50_A 2c51_A 2iz8_A 2iz9_A* 2izm_A 2izn_A 2ms2_A 5msf_A 6msf_A 7msf_A 1aq3_A ...
Probab=34.15 E-value=18 Score=28.00 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=12.9
Q ss_pred CCCcEEEEeeCCCCCC
Q psy16990 154 NRHAYFLLVDNGTAGK 169 (250)
Q Consensus 154 ~nHshFlLVDdGt~g~ 169 (250)
.|-.-|+|||+|-.|.
T Consensus 2 sn~~~fvlvdnggtg~ 17 (129)
T 1msc_A 2 SNFTQFVLVDNGGTGD 17 (129)
T ss_dssp CCCCCEEEECCSSTTC
T ss_pred CcceEEEEEecCCccc
Confidence 3567899999998775
No 17
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=32.92 E-value=32 Score=28.59 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=17.9
Q ss_pred CcEEEeCCcccchhhHHHHHhhhh
Q psy16990 61 GAWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 61 gAWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
...+||||+..||.+.+.+.+.+.
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~ 46 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLE 46 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCchHHHHHHHHHHC
Confidence 356788888778888888777654
No 18
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=27.71 E-value=99 Score=28.04 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred hhhcCCCCCeEEEEecCCCCCCCcH---HHHHHHHHHHHHHhhhcCcEEEeCCcccchhhHHHHHhhh
Q psy16990 19 REWSLELPKLLITVQGGKANFELQP---KLKKVLRKGLLKAAKTTGAWVFTGGTNTGVTRQVGDALLM 83 (250)
Q Consensus 19 ~~W~L~~P~LVISV~GGa~nf~l~~---~L~~~f~~GLikAAqsTgAWIiTgG~~~GV~k~VG~Av~d 83 (250)
++|.-+.|.+.|.|-=|.+...+.. .+-..|..+|-.+-=+.+.=+|--.-++.++-.||+++.-
T Consensus 163 ~~~~~~~~DV~iVIaDGLSa~Ai~~na~~~l~aL~~~L~~~g~~vap~v~v~qgRValgDeIge~L~A 230 (306)
T 3abq_B 163 KAQCVANPDVQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGA 230 (306)
T ss_dssp HHHSCSSCSEEEEEECTTCSHHHHTTHHHHHHHHHHHHHTTTCCBCCCEEEETCCTTHHHHHHHHHTC
T ss_pred HHhcCCCCCEEEEEeCCCCHHHHHHhHHHHHHHHHHHHHhcCCCcCCeEEEeeCeehHHHHHHHHHCC
Confidence 4566778999999999998877653 3445566656433345565555556689999999999983
No 19
>1una_A GA unassembled coat protein dimer; unassembled virus coat protein dimer, bacteriophage, RNA- binding dimer, translational repressor; 2.80A {Enterobacteria phage GA} SCOP: d.85.1.1 PDB: 1gav_A
Probab=27.14 E-value=29 Score=26.91 Aligned_cols=15 Identities=47% Similarity=0.742 Sum_probs=11.8
Q ss_pred CCcEEEEeeCCCCCC
Q psy16990 155 RHAYFLLVDNGTAGK 169 (250)
Q Consensus 155 nHshFlLVDdGt~g~ 169 (250)
|-.-|+|||+|-.|.
T Consensus 2 ~~~~fvlvdnggtg~ 16 (129)
T 1una_A 2 TLHSFVLVDNGGTGN 16 (129)
T ss_dssp CSCCEEEECSSSSSC
T ss_pred cceEEEEEecCCccc
Confidence 345799999998775
No 20
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*
Probab=24.80 E-value=2e+02 Score=27.22 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=57.7
Q ss_pred ecCCCChHHHHHHhHhhhcCCCCC-eEEEEecCCCC-----CCCcHHHHHHHHHHHHHHhhhcC---cEEEe----CCcc
Q psy16990 4 LSYDTRPENILQLFTREWSLELPK-LLITVQGGKAN-----FELQPKLKKVLRKGLLKAAKTTG---AWVFT----GGTN 70 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W~L~~P~-LVISV~GGa~n-----f~l~~~L~~~f~~GLikAAqsTg---AWIiT----gG~~ 70 (250)
+.-|++|..|-.+....=.|=.|+ ++..-.|-..| +..-..+.+.+..-|-|.++... .-.|| |||-
T Consensus 69 v~vDlep~vi~~i~~~~~~lf~p~~~it~~~GAgnn~a~G~~~~G~~~~ee~~d~Ir~~~e~cD~lqgf~i~~slgGGTG 148 (473)
T 2bto_A 69 IMVDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTG 148 (473)
T ss_dssp EEEESSSHHHHHHHHHSTTCSCGGGEEECSSCCTTCHHHHHTSHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSHH
T ss_pred eEecCcchhhhhhhccccccccccceEecccCCCCCcCCCcchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeeCCCCCC
Confidence 345889999988876653344565 44444444455 44444444444444555665443 35554 6777
Q ss_pred cchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 71 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 71 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+|+.-.+.+.++|.-. ..-+.+++|-|-
T Consensus 149 SG~~~~l~e~l~e~y~--~~~ilt~~V~P~ 176 (473)
T 2bto_A 149 SGFGALLIESLKEKYG--EIPVLSCAVLPS 176 (473)
T ss_dssp HHHHHHHHHHHHHHTC--SSCEEEEEEECC
T ss_pred cchHHHHHHHHHHHcC--CCceEEEEEecC
Confidence 8999999999997521 123667787665
No 21
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...
Probab=24.31 E-value=68 Score=30.42 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCCChHHHHHHhHhhhc-CCCCCeEEEEecCC-CCCC-----CcHH----HHHHHHHHHHHHhhhcCcEEEe----CCcc
Q psy16990 6 YDTRPENILQLFTREWS-LELPKLLITVQGGK-ANFE-----LQPK----LKKVLRKGLLKAAKTTGAWVFT----GGTN 70 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~-L~~P~LVISV~GGa-~nf~-----l~~~----L~~~f~~GLikAAqsTgAWIiT----gG~~ 70 (250)
-|.+|.+|-++.+..|+ |=.|.-+|+=-.|| .|+. .-.. +.+.+|+ ++..+...-...|+ |||-
T Consensus 68 vDlEp~vid~v~~g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk-~~E~cD~lqGF~i~hSlgGGTG 146 (451)
T 3ryc_A 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRK-LADQCTGLQGFLVFHSFGGGTG 146 (451)
T ss_dssp EESSSHHHHHHHHSTTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHH-HHHTCSSCCEEEEEEESSSHHH
T ss_pred ecCCcchhheeeecccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHH-HHHcCCCccceEEEeccCCCCC
Confidence 46789999998887664 55565444444455 4442 2233 3444555 44555555455555 6777
Q ss_pred cchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 71 TGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 71 ~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
+|+.-.+-+.+++.-. ..-+.+++|-|-
T Consensus 147 SG~gs~lle~L~~ey~--kk~~~~~~v~P~ 174 (451)
T 3ryc_A 147 SGFTSLLMERLSVDYG--KKSKLEFSIYPA 174 (451)
T ss_dssp HHHHHHHHHHHHHHTT--TCEEEEEEEECC
T ss_pred ccHHHHHHHHHHHhcC--cceEEEEEEecC
Confidence 8999999998887421 113456777664
No 22
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.24 E-value=84 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhh--cCcEEEeCCcccchhhHHHHHhhhh
Q psy16990 47 KVLRKGLLKAAKT--TGAWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 47 ~~f~~GLikAAqs--TgAWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
+.+++-|.++++. ...-|+|||+-.|--=++-+|+++.
T Consensus 67 ~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~~ 106 (178)
T 2pjk_A 67 IKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKL 106 (178)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHHH
Confidence 3445545557765 7899999999998766666777653
No 23
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase, autoprot precursor, hydrolase; 1.95A {Escherichia coli} PDB: 2zak_A
Probab=22.65 E-value=49 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=23.6
Q ss_pred EEEEecCCCCC---CCcHHHHHHHHHHHHHHhhh
Q psy16990 29 LITVQGGKANF---ELQPKLKKVLRKGLLKAAKT 59 (250)
Q Consensus 29 VISV~GGa~nf---~l~~~L~~~f~~GLikAAqs 59 (250)
+|.|||||.+. .|++..++..+++|-.|++.
T Consensus 4 ~i~iHGGAG~~~~~~~~~~~~~~~~~~l~~a~~~ 37 (320)
T 3c17_A 4 VIAIHGGAGAISRAQMSLQQELRYIEALSAIVET 37 (320)
T ss_dssp EEEEEEEEEEECGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 78899999876 36777777777777777664
No 24
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=22.19 E-value=82 Score=27.86 Aligned_cols=59 Identities=17% Similarity=0.465 Sum_probs=41.0
Q ss_pred eecCCCChHHHHHHhHh------------hhcCCCCCeEEEEecCCCCCCCcHHHHHHHHH------------HHHHHhh
Q psy16990 3 RLSYDTRPENILQLFTR------------EWSLELPKLLITVQGGKANFELQPKLKKVLRK------------GLLKAAK 58 (250)
Q Consensus 3 Rls~dt~p~~i~~Ll~~------------~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~------------GLikAAq 58 (250)
-++-|.+|+.|+.--.. -|--+.|+.||-. .+|.++..|++.+|+ ..|.++.
T Consensus 45 A~GgdLsp~rLl~AY~~GiFPw~~~~~pilWwsP~pR~Vl~p----~~~hisrSLrk~lr~~~f~vt~n~aF~~VI~~Ca 120 (256)
T 2cxa_A 45 ALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWP----ESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCA 120 (256)
T ss_dssp EECCCCCHHHHHHHHHHTCEECCCTTSCCEEECCSSEEEECG----GGCCCCHHHHHHHHTCCCEEEESSCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHhcCcccCCCCCCccceECCCCCEEecc----ccccCCHHHHHHHCCCCeEEEEcCcHHHHHHHhc
Confidence 34556777777654322 4778999999975 579999999999886 4666654
Q ss_pred h---cCcEEE
Q psy16990 59 T---TGAWVF 65 (250)
Q Consensus 59 s---TgAWIi 65 (250)
. .|.||-
T Consensus 121 ~~R~~gTWI~ 130 (256)
T 2cxa_A 121 SDREEGTWIT 130 (256)
T ss_dssp TC---CTTCC
T ss_pred CCCCCCCCCC
Confidence 2 467763
No 25
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=21.62 E-value=72 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=13.8
Q ss_pred CcEEEeCCc-ccchhhHHHHHhhh
Q psy16990 61 GAWVFTGGT-NTGVTRQVGDALLM 83 (250)
Q Consensus 61 gAWIiTgG~-~~GV~k~VG~Av~d 83 (250)
...+||||. +.||.+.+.+++..
T Consensus 15 k~vlITGa~~~~giG~~ia~~l~~ 38 (271)
T 3ek2_A 15 KRILLTGLLSNRSIAYGIAKACKR 38 (271)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHH
Confidence 445666664 35666666666654
No 26
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=21.31 E-value=40 Score=25.64 Aligned_cols=40 Identities=25% Similarity=0.557 Sum_probs=29.5
Q ss_pred hcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhhhcCcEE
Q psy16990 21 WSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTTGAWV 64 (250)
Q Consensus 21 W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAqsTgAWI 64 (250)
+.+..|...+.|.|..=.+....|+++.|+ +.|-+ .|.||
T Consensus 63 F~f~l~~~~~~I~G~~l~~Rp~dR~~kk~K--~~~~~--~~~~~ 102 (102)
T 1ts9_A 63 FRVWYKGKIMRIKGDLINFRPEDRIKRGLM--MLKRA--KGVWI 102 (102)
T ss_dssp EEEEETTEEEEEEGGGTCSCHHHHHHHHHH--HHHHT--TTCCC
T ss_pred EEEEECCEEEEEECceeccChHHHhhhhhh--hhhhc--ccccC
Confidence 456678999999996666666678888888 44444 48886
No 27
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}
Probab=20.32 E-value=1.9e+02 Score=26.86 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred ecCCCChHHHHHHhHhhh-cCCCCCeEEEEecCCC-C-----CCCcHHHHHHHHHHHHHHhhhcCc---EEEe----CCc
Q psy16990 4 LSYDTRPENILQLFTREW-SLELPKLLITVQGGKA-N-----FELQPKLKKVLRKGLLKAAKTTGA---WVFT----GGT 69 (250)
Q Consensus 4 ls~dt~p~~i~~Ll~~~W-~L~~P~LVISV~GGa~-n-----f~l~~~L~~~f~~GLikAAqsTgA---WIiT----gG~ 69 (250)
|..|++|..|-++..... .|=.|+-++.=-.|+. | +..-..+.+.+..-|-|.++.... -.|| |||
T Consensus 65 v~vDle~~~l~~i~~~~~~~lf~p~~i~~g~~gAgnn~a~G~~~~G~~~~e~~~d~Ir~~~e~cD~lqgf~i~~s~gGGT 144 (426)
T 2btq_B 65 VLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGS 144 (426)
T ss_dssp EEEEECC------------CCCCTTSEEECCSCCTTCHHHHHTHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEEESSSST
T ss_pred EEEecCccccccccccccccccCcccccccccCccCcccccccchhHHHHHHHHHHHHHHHhcCCCcceEEEEEecCCCc
Confidence 345778887777665332 3333554443333454 4 333344434333335556665443 4544 677
Q ss_pred ccchhhHHHHHhhhhhccCCCceEEEeeccc
Q psy16990 70 NTGVTRQVGDALLMERSQRSGRVVSIGIAPW 100 (250)
Q Consensus 70 ~~GV~k~VG~Av~d~~s~~~~kv~~IGIApW 100 (250)
-+|+.-.+.+.++|.-. ..-+.+++|-|-
T Consensus 145 GSG~~~~l~e~l~~~y~--~~~~lt~~V~p~ 173 (426)
T 2btq_B 145 GSGLGSLILERLRQAYP--KKRIFTFSVVPS 173 (426)
T ss_dssp TTHHHHHHHHHHHTTCT--TSEEEEEEEECC
T ss_pred cccHHHHHHHHHHHHcC--cCceEEEEEecC
Confidence 78999999999997421 113567777664
No 28
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.12 E-value=99 Score=24.75 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCCChHHHHHHhHhhhcCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHhh-hcCcEEEeCCcccchhhHHHHHhhhh
Q psy16990 6 YDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAK-TTGAWVFTGGTNTGVTRQVGDALLME 84 (250)
Q Consensus 6 ~dt~p~~i~~Ll~~~W~L~~P~LVISV~GGa~nf~l~~~L~~~f~~GLikAAq-sTgAWIiTgG~~~GV~k~VG~Av~d~ 84 (250)
.|++-..|..+| ++|+.+.-...| +. .. +.+++-|.+|++ ....-|+|||+-.|--=++-+|+++.
T Consensus 25 ~Dsn~~~l~~~l-~~~G~~v~~~~i--v~--------Dd--~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~ 91 (164)
T 3pzy_A 25 EDRCGPIITEWL-AQQGFSSAQPEV--VA--------DG--SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAV 91 (164)
T ss_dssp -CCHHHHHHHHH-HHTTCEECCCEE--EC--------SS--HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred eeHHHHHHHHHH-HHCCCEEEEEEE--eC--------CH--HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHH
Confidence 355555555555 667765444322 12 11 233443444554 67899999999998766666777653
Done!