RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16990
         (250 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 37/171 (21%)

Query: 1   YVRLSYDTRPENILQLFTREWSLELPKLLITVQGGKANFELQPKLKKVLRKGLLKAAKTT 60
           Y+      R  N  Q+F         K  ++          + +    LR+ LL+     
Sbjct: 112 YI--EQRDRLYNDNQVF--------AKYNVS----------RLQPYLKLRQALLELRPAK 151

Query: 61  GAWVFTGGTNTGVTRQVGDALLMERSQRSGRVVSIGIAPW---GIVENNHELIVCRPEQP 117
              +  G   +G T    D      S +    +   I  W       +   ++    E  
Sbjct: 152 NVLID-GVLGSGKTWVALDVC---LSYKVQCKMDFKIF-WLNLKNCNSPETVL----EML 202

Query: 118 ARLF-PIGENNHELIGHNKDVPY--HSISSPRSKFAVLNNRHAYFLLV-DN 164
            +L   I  N      H+ ++    HSI +   +  + +  +   LLV  N
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLN 252


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.28
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 63/233 (27%)

Query: 36  KANFELQPKLKKVLRKGLLKAAKTTGAWVFT--GGTNTGVTRQVGDAL-----LMERSQR 88
            A    +    K     L +A     A +    GG       Q G+       L +  Q 
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-------Q-GNTDDYFEELRDLYQT 179

Query: 89  SGRVVSIGIAPWGIVENNHEL---IVCRPEQPARLFPIGENNHELIGHNKDVP--YHSIS 143
              +V        +++ + E    ++       ++F  G N  E + +  + P   + +S
Sbjct: 180 YHVLVG------DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233

Query: 144 SPRSKFAVLNNRHAYFLLVDNGTAGKYGAEIILRRKLEKYISNQKLHPG--KSKIVGAKG 201
            P S   ++       ++        Y   ++  + L          PG  +S + GA G
Sbjct: 234 IPIS-CPLI------GVI----QLAHY---VVTAKLLG-------FTPGELRSYLKGATG 272

Query: 202 GENGEPLV----FASTNEIWTASLHTSPSNTDAYGTIEFQGGPHPSKAQVRYP 250
             + + LV     A T+  W  S      +     T+ F  G    +    YP
Sbjct: 273 --HSQGLVTAVAIAETDS-W-ESFF---VSVRKAITVLFFIG---VRCYEAYP 315



 Score = 30.8 bits (69), Expect = 0.55
 Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 75/219 (34%)

Query: 71  TGVTRQVGDALLMERSQR--SGRVVSIGIAPWGIVENNHE-LIVCRPEQPARLF------ 121
           + +T++     + + +    +G+ V I +       N  + L+V  P  P  L+      
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLV------NGAKNLVVSGP--PQSLYGLNLTL 393

Query: 122 -----PIGENNHELIGHNK------------DVPYHS--------------------ISS 144
                P G +    I  ++              P+HS                     ++
Sbjct: 394 RKAKAPSGLDQSR-IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452

Query: 145 PRSKFAVLNNRHAYFLLVDNGTAGKYGAEIILRRKL--EKYISNQKLH-----PGKSKIV 197
              +  V +      L V +G+  +   + I+R  +  E     +  H     PG +  +
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512

Query: 198 GAKGGEN----GEPLVFASTNEIWTASLHTSPSNTDAYG 232
           G     N    G  ++ A T       L  +P   D YG
Sbjct: 513 GVLTHRNKDGTGVRVIVAGT-------LDINPD--DDYG 542


>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
           viral replication, nucleotide-binding; 2.10A {Kokobera
           virus} PDB: 2v6j_A
          Length = 431

 Score = 27.9 bits (62), Expect = 3.2
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 62  AWVFTGGTNTGVTRQVGDALLMERSQRSGRV--VSIGIA----PWGIVENNHELIVCRPE 115
             +  G  +      +  A     +QR GR+      +       G V +++E  V   E
Sbjct: 247 PILLDGRVSMQGPIAITPA---SAAQRRGRIGRNPEKLGDIYAYSGNVSSDNEGHVSWTE 303

Query: 116 QPARLFPIGENN 127
               L  +    
Sbjct: 304 ARMLLDNVHVQG 315


>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
           2.10A {Streptococcus mutans}
          Length = 213

 Score = 26.8 bits (60), Expect = 5.3
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 10  PENILQLF----TREWSLELPKLLITVQGGKANFELQPKLKKVLRKGL 53
            E   +L     T E ++ L +  I    G  +F++  + K  L  GL
Sbjct: 141 KEVRDKLAKLKPTDEVTVNLFEQKIYSPVGDFSFDIDGEWKHKLLNGL 188


>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
           BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
           2hor_A* 1lk9_A*
          Length = 427

 Score = 26.8 bits (59), Expect = 7.5
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 1   YVRLSYDTRPENILQLFTR 19
           YVRLS     ++  QL   
Sbjct: 399 YVRLSLIKTQDDFDQLMYY 417


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,747,229
Number of extensions: 222150
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 7
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)