RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16990
         (250 letters)



>d2ghvc1 d.318.1.1 (C:320-502) Spike protein S1 {SARS coronavirus
           [TaxId: 227859]}
          Length = 183

 Score = 26.5 bits (58), Expect = 2.5
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 156 HAYFL-LVDNGTAGKYGAEIILRRKLEKYISNQKLHPGKSKIVGAKGGENGEPLVFASTN 214
            A+    +D  + G Y           +Y+ + KL P +  I       +G+P    + N
Sbjct: 102 LAWNTRNIDATSTGNYN-------YKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALN 154

Query: 215 EIWTAS 220
             W  +
Sbjct: 155 CYWPLN 160


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 27.1 bits (59), Expect = 2.5
 Identities = 8/54 (14%), Positives = 17/54 (31%)

Query: 68  GTNTGVTRQVGDALLMERSQRSGRVVSIGIAPWGIVENNHELIVCRPEQPARLF 121
           G+N   TR        E   +  + V++      I +     +  +    A + 
Sbjct: 253 GSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMA 306


>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase
           subunit E, GatE, insert domain {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 125

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 147 SKFAVLNNRHAYFLLVDNGTAGKYGAEIILRRKLEKYISNQKLHPGKSKIVGAKG 201
           ++  ++++  +   +   G  G  G EI   R+L   +++       +K  G  G
Sbjct: 17  TESRIISSAESVLAVKLRGFDGLIGVEIQPGRRLGTEMAD------YAKKRGVSG 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,813
Number of extensions: 40398
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)