BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16993
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 11/169 (6%)
Query: 454 AKPLPEDLEKYM-SDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVE 512
AKPLP++ E ++ S +GV+ FS G+ V +N N + ++I QK+LW+ D
Sbjct: 4 AKPLPKEXEDFVQSSGENGVVVFSLGSXV--SNXTEERANVIASALAQIPQKVLWRFDGN 61
Query: 513 VEVPPNVLVRN-----WFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQ 567
P+ L N W PQ D+LGH R F+THGG + EA YHG+P V +P F+DQ
Sbjct: 62 ---KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 568 FQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAI 616
N+ + +G +D ++ S ++ A+ V+ D +Y N ++S I
Sbjct: 119 PDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRI 167
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 57 PPPPGVDNYTYVYVPHL-FNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNV 115
P G++ Y ++P GH R F+THGG + EA YHG+P V +P F+DQ N+
Sbjct: 63 PDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNI 122
Query: 116 LLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTITDEL 154
+ +G +D ++ S ++ A+ V+ D + + +
Sbjct: 123 AHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENV 161
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 514 EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLL 573
EVPPNV V W PQ DIL F+TH G+ S MEA + VP+V +P ++Q N
Sbjct: 302 EVPPNVEVHQWVPQLDIL--TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER 359
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMK 618
+ E GLGR I D + ++ + EAV AV D A+R++A+ +
Sbjct: 360 IVELGLGRHIPRDQVTAEKLREAVLAVASDPGV---AERLAAVRQ 401
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 59 PPGVDNYTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLM 118
PP V+ + +VP L + F+TH G+ S MEA + VP+V +P ++Q N +
Sbjct: 304 PPNVE--VHQWVPQL-DILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
Query: 119 QEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTITDELETV 157
E GLGR I D + ++ + EAV AV D + + L V
Sbjct: 361 VELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAV 399
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 472 VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILW--KTDVEVEVPPNVLVRN------ 523
V++ SFG+ V PP+ L A ES + +W + D + ++P L R
Sbjct: 275 VVYISFGSVV---TPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKI 331
Query: 524 --WFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQ---EKG 578
W PQ +IL H + +FLTH G +S +E GVP++ P F DQ N +L + E G
Sbjct: 332 VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 579 LGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSS 620
+G +D L + + +A+ + + ++I + +S+
Sbjct: 392 VG--VDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESA 431
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 77 HKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQ---EKGLGRVIDMDSLD 133
H + +FLTH G +S +E GVP++ P F DQ N +L + E G+G +D L
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG--VDNGVLT 400
Query: 134 SDVVVEAVNAVLGDK 148
+ + +A+ + +
Sbjct: 401 KESIKKALELTMSSE 415
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 483 FANMPPYVLNAFVESFSKIKQKILWKTDVEV-EVPPNVLVRNWFPQADILGHKNCRLFLT 541
F N+P + L +I +K+ T E+ E+P NV V +W PQ IL + LF+T
Sbjct: 257 FGNLPGWHL------VLQIGRKV---TPAELGELPDNVEVHDWVPQLAIL--RQADLFVT 305
Query: 542 HGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVL 601
H G + E P++ +P DQF N ++Q G+ R + + +D++ E A++
Sbjct: 306 HAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALV 365
Query: 602 GDKTYAANAKRISAIMKSSPVSSLEKAVYWTEYVIRHE 639
D A +RI A M + + E RHE
Sbjct: 366 DDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHE 403
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 78 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVV 137
+ LF+TH G + E P++ +P DQF N ++Q G+ R + + +D++
Sbjct: 298 RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLL 357
Query: 138 VEAVNAVLGDKTITDELETV 157
E A++ D + L +
Sbjct: 358 RETALALVDDPEVARRLRRI 377
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 459 EDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILW----------- 507
E L+ S P V++ +FG+ M P L F + K+ LW
Sbjct: 284 ECLDWLESKEPGSVVYVNFGSTTV---MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGS 340
Query: 508 ---KTDVEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGF 564
++ E+ L+ +W PQ +L H + FLTH G +S E+ GVP++ P F
Sbjct: 341 VIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFF 400
Query: 565 SDQFQNV-LLMQEKGLGRVIDMDSLDSDVVVEAVNAVL-GDKTYAANAKRISAIMKS 619
+DQ + + E +G ID + + + + + +N V+ GDK K + K+
Sbjct: 401 ADQPTDCRFICNEWEIGMEIDTN-VKREELAKLINEVIAGDKGKKMKQKAMELKKKA 456
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNV-LLMQEKGLGRVIDMDSLDSDVVVEAV 141
FLTH G +S E+ GVP++ P F+DQ + + E +G ID + + + + + +
Sbjct: 375 FLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN-VKREELAKLI 433
Query: 142 NAVL-GDK 148
N V+ GDK
Sbjct: 434 NEVIAGDK 441
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 463 KYMSDAPHG-VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILW-------------- 507
K++ + P G V++ SFG+ + LN + +Q+ LW
Sbjct: 260 KWLDNQPLGSVLYVSFGSG---GTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYF 316
Query: 508 ----KTDVEVEVPPNVLVRN---------WFPQADILGHKNCRLFLTHGGIHSAMEAGYH 554
+TD +PP L R W PQA +L H + FLTH G +S +E+
Sbjct: 317 DSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVS 376
Query: 555 GVPVVMMPGFSDQFQNVLLMQE 576
G+P++ P +++Q N +L+ E
Sbjct: 377 GIPLIAWPLYAEQKMNAVLLSE 398
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 76 GHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQE 120
H + FLTH G +S +E+ G+P++ P +++Q N +L+ E
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSE 398
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 469 PHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILW--KTDVEVEVPPNVLVRN--- 523
P V++ SFGT PP + A E+ + +W + V +P L +
Sbjct: 270 PTSVVYISFGT---VTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGY 326
Query: 524 -----WFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKG 578
W PQA++L H+ F+TH G +S E+ GVP++ P F DQ N
Sbjct: 327 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN-------- 378
Query: 579 LGRVIDMDSLDSDVVVEA 596
GR+++ D L+ V +E
Sbjct: 379 -GRMVE-DVLEIGVRIEG 394
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 76 GHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSD 135
H+ F+TH G +S E+ GVP++ P F DQ N GR+++ D L+
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN---------GRMVE-DVLEIG 389
Query: 136 VVVEA 140
V +E
Sbjct: 390 VRIEG 394
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 428 EHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAP-HGVIFFSFGT-NVRFAN 485
+HD I A+ P + G + K + + + K++ + P V+F FG+ V F
Sbjct: 233 DHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG- 291
Query: 486 MPPYVLNAFVESFSKIKQKILWKTDVEVEVPP-----------NVLVRNWFPQADILGHK 534
P + + LW E +V P ++ W PQ ++L HK
Sbjct: 292 --PSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 349
Query: 535 NCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL-LMQEKGLGRVIDMDSLDSDVV 593
F++H G +S +E+ + GVP++ P +++Q N L++E G+G + +D V
Sbjct: 350 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
Query: 594 VEA 596
V A
Sbjct: 410 VAA 412
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 GHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL-LMQEKGLGRVIDMDSLDS 134
HK F++H G +S +E+ + GVP++ P +++Q N L++E G+G + +D
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 135 DVVVEAVNAVLGDKTITDE 153
VV A G K + D+
Sbjct: 407 SDVVAAEEIEKGLKDLMDK 425
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 428 EHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAP-HGVIFFSFGT-NVRFAN 485
+HD I A+ P + G + K + + + K++ + P V+F FG+ V F
Sbjct: 233 DHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG- 291
Query: 486 MPPYVLNAFVESFSKIKQKILWKTDVEVEVPP-----------NVLVRNWFPQADILGHK 534
P + + LW E +V P ++ W PQ ++L HK
Sbjct: 292 --PSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 349
Query: 535 NCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL-LMQEKGLGRVIDMDSLDSDVV 593
F++H G +S +E+ + GVP++ P +++Q N L++E G+G + +D V
Sbjct: 350 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
Query: 594 VEA 596
V A
Sbjct: 410 VAA 412
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 76 GHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL-LMQEKGLGRVIDMDSLDS 134
HK F++H G +S +E+ + GVP++ P +++Q N L++E G+G + +D
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 135 DVVVEAVNAVLGDKTITDE 153
VV A G K + D+
Sbjct: 407 SDVVAAEEIEKGLKDLMDK 425
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 515 VPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQ-NVLL 573
+PPNV W P +L H R LTHG + +EA GVP+V++P F+ + +
Sbjct: 279 LPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKT 605
+ E GLG V+ D L+ + EAV + D
Sbjct: 337 VIELGLGSVLRPDQLEPASIREAVERLAADSA 368
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 57 PPPPGVDNYTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQ-NV 115
P PP V+ + ++ + + C LTHG + +EA GVP+V++P F+ + +
Sbjct: 278 PLPPNVEAHQWIPFHSVLAHARAC---LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSA 334
Query: 116 LLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKT 149
+ E GLG V+ D L+ + EAV + D
Sbjct: 335 ERVIELGLGSVLRPDQLEPASIREAVERLAADSA 368
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 458 PEDLEKYMSDAPHGV-IFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVE---- 512
P + +++ D P + + G + R ++ + + + + +I+ D +
Sbjct: 254 PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEG 313
Query: 513 -VEVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNV 571
+P NV + P +L C + HGG S A HGVP V++P D
Sbjct: 314 VANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRA 371
Query: 572 LLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
QE G G + + L D + E+V VL D + A A R+ M + P
Sbjct: 372 QRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEP 421
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%)
Query: 79 NCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVV 138
C + HGG S A HGVP V++P D QE G G + + L D +
Sbjct: 335 TCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLR 394
Query: 139 EAVNAVLGD 147
E+V VL D
Sbjct: 395 ESVKRVLDD 403
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 455 KPLP----EDLEKYMS--DAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWK 508
+P+P DL ++S D +++ + GT+ + VL A ++ + + +L
Sbjct: 221 RPVPFAEQGDLPAWLSSRDTARPLVYLTLGTS---SGGTVEVLRAAIDGLAGLDADVLVA 277
Query: 509 TDVEV------EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMP 562
+ + EVP NV + +W PQA +L H + L + HGG + + A GVP + P
Sbjct: 278 SGPSLDVSGLGEVPANVRLESWVPQAALLPHVD--LVVHHGGSGTTLGALGAGVPQLSFP 335
Query: 563 GFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAAN 609
D F N + + G G + D++ D V A +L +++Y A
Sbjct: 336 WAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAG 382
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 515 VPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL-- 572
+P NV W P +L + C + HGG + M A G+P ++ P DQFQ+
Sbjct: 281 LPRNVRAVGWTPLHTLL--RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTARE 338
Query: 573 LMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSS 624
+ +G+G V D +D+D+ + ++GD++ A+ + M + P +
Sbjct: 339 AVSRRGIGLVSTSDKVDADL----LRRLIGDESLRTAAREVREEMVALPTPA 386
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 78 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL--LMQEKGLGRVIDMDSLDSD 135
+ C + HGG + M A G+P ++ P DQFQ+ + +G+G V D +D+D
Sbjct: 298 RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 136 VVVEAVNAVLGDKTI 150
+ + ++GD+++
Sbjct: 358 L----LRRLIGDESL 368
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 473 IFFSFGTNVRFAN---MPP--YVLNAFVESFSKIKQKILWKTDVEVE-----VPPNVLVR 522
+ +FGT V N +P +L A + K+ +++ ++ +P VL
Sbjct: 229 LCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAA 288
Query: 523 NWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRV 582
FP + I C + + HGG + + GVP V +P ++ + + L+ G G
Sbjct: 289 GQFPLSAIX--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVE 346
Query: 583 IDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSS 624
+ + + V+ A + D +Y NA+R++A + P +
Sbjct: 347 VPWEQAGVESVLAACARIRDDSSYVGNARRLAAEXATLPTPA 388
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 514 EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLL 573
++PPNV W P +L + + +THGG + EA Y G P+V++P D
Sbjct: 294 DLPPNVEAHRWVPHVKVL--EQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARR 351
Query: 574 MQEKGLGRVIDMDSLDSDVVV 594
+ + GLG V+ + D D ++
Sbjct: 352 VDQLGLGAVLPGEKADGDTLL 372
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 59 PPGVDNYTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLM 118
PP V+ + +V PH+ + + +THGG + EA Y G P+V++P D +
Sbjct: 296 PPNVEAHRWV--PHV-KVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
Query: 119 QEKGLGRVIDMDSLDSDVVV 138
+ GLG V+ + D D ++
Sbjct: 353 DQLGLGAVLPGEKADGDTLL 372
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 514 EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLL 573
++PPNV W P +L + + +THGG + EA Y G P+V++P D
Sbjct: 294 DLPPNVEAHRWVPHVKVL--EQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARR 351
Query: 574 MQEKGLGRVIDMDSLDSDVVV 594
+ + GLG V+ + D D ++
Sbjct: 352 VDQLGLGAVLPGEKADGDTLL 372
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 59 PPGVDNYTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLM 118
PP V+ + +V PH+ + + +THGG + EA Y G P+V++P D +
Sbjct: 296 PPNVEAHRWV--PHV-KVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV 352
Query: 119 QEKGLGRVIDMDSLDSDVVV 138
+ GLG V+ + D D ++
Sbjct: 353 DQLGLGAVLPGEKADGDTLL 372
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 473 IFFSFGTNVRFAN---MPP--YVLNAFVESFSKIKQKILWKTDVEVE-----VPPNVLVR 522
+ +FGT V N +P +L A + K+ +++ ++ +P VL
Sbjct: 230 LCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAA 289
Query: 523 NWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRV 582
FP + I C + + HGG + + GVP V +P ++ + + L+ G G
Sbjct: 290 GQFPLSAI--XPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVE 347
Query: 583 IDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSS 624
+ + + V+ A + D +Y NA+R++A + P +
Sbjct: 348 VPWEQAGVESVLAACARIRDDSSYVGNARRLAAEXATLPTPA 389
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 515 VPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL-- 572
+P NV W P +L + C + HGG + A G+P ++ P DQFQ+
Sbjct: 281 LPRNVRAVGWTPLHTLL--RTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTARE 338
Query: 573 LMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTY--AANAKRISAIMKSSPVSSLEKAV 629
+ +G+G V D +D+D+ + ++GD++ AA R + +P ++ + V
Sbjct: 339 AVSRRGIGLVSTSDKVDADL----LRRLIGDESLRTAAREVREEXVALPTPAETVRRIV 393
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 78 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVL--LMQEKGLGRVIDMDSLDSD 135
+ C + HGG + A G+P ++ P DQFQ+ + +G+G V D +D+D
Sbjct: 298 RTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 136 VVVEAVNAVLGDKTI 150
+ + ++GD+++
Sbjct: 358 L----LRRLIGDESL 368
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 534 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSD-- 591
+ C L + GG +A A G+P +++P + DQF + G G + + SD
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 592 VVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
+++ VLGD +AA A ++S + + P
Sbjct: 345 QFTDSIATVLGDTGFAAAAIKLSDEITAMP 374
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 78 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSD-- 135
+ C L + GG +A A G+P +++P + DQF + G G + + SD
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 136 VVVEAVNAVLGD 147
+++ VLGD
Sbjct: 345 QFTDSIATVLGD 356
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 534 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSD-- 591
+ C L + GG +A A G+P +++P + DQF + G G + + SD
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 592 VVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
+++ VLGD +AA A ++S + + P
Sbjct: 345 QFTDSIATVLGDTGFAAAAIKLSDEITAMP 374
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 78 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSD-- 135
+ C L + GG +A A G+P +++P + DQF + G G + + SD
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHE 344
Query: 136 VVVEAVNAVLGD 147
+++ VLGD
Sbjct: 345 QFTDSIATVLGD 356
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 516 PPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMP--GFSDQFQNVLL 573
P NV V W P +L + C + HGG + + A GVP ++P + D ++VL
Sbjct: 287 PANVRVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVL- 343
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
GLG I D+ + E +L D A R+ M P
Sbjct: 344 ---TGLG--IGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMP 386
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 516 PPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMP--GFSDQFQNVLL 573
P NV V W P +L + C + HGG + + A GVP ++P + D ++VL
Sbjct: 287 PANVRVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVL- 343
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
GLG I D+ + E +L D A R+ M P
Sbjct: 344 ---TGLG--IGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMP 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,698,689
Number of Sequences: 62578
Number of extensions: 874179
Number of successful extensions: 1669
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 56
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)