RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16993
(703 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 227 bits (582), Expect = 4e-71
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 5/170 (2%)
Query: 452 KHAKPLPEDLEKYMSDA-PHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTD 510
AKPLP+++E ++ + +GV+ FS G+ V NM N + ++I QK+LW+ D
Sbjct: 2 NAAKPLPKEMEDFVQSSGENGVVVFSLGSMVS--NMTEERANVIASALAQIPQKVLWRFD 59
Query: 511 VEV--EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQF 568
+ N + W PQ D+LGH R F+THGG + EA YHG+P+V +P F+DQ
Sbjct: 60 GNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQP 119
Query: 569 QNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMK 618
N+ M+ +G +D +++ S ++ A+ V+ D +Y N ++S I
Sbjct: 120 DNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRIQH 169
Score = 102 bits (256), Expect = 2e-25
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 76 GHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSD 135
GH R F+THGG + EA YHG+P+V +P F+DQ N+ M+ +G +D +++ S
Sbjct: 83 GHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSST 142
Query: 136 VVVEAVNAVLGDKT 149
++ A+ V+ D +
Sbjct: 143 DLLNALKRVINDPS 156
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 186 bits (475), Expect = 1e-52
Identities = 71/406 (17%), Positives = 122/406 (30%), Gaps = 58/406 (14%)
Query: 252 FFLTVNEETASEIRANFRNRTHADLIGLFHSLCLAQMEQVLRTPEIQTFVQRDDSHFDLV 311
L + + T D + F + + + Q+ D DLV
Sbjct: 57 PVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAYA--------DDIPDLV 108
Query: 312 IIEGTFCGECLLAMGHKYKAPVINFQPLGYWPSNYYVYGNLLSPAVIPDFRLPSTTQMNF 371
+ + T +LA ++ P ++ P + + P +
Sbjct: 109 LHDITSYPARVLA--RRWGVPAVSLSP-----------NLVAWKGYEEEVAEPMWREPRQ 155
Query: 372 WGRLDSLWFAVTDLFLTNLFYYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDI 431
R + + A + + K G P S+ + +
Sbjct: 156 TERGRAYY------------------ARFEAWLKENGITEHPDTFASHPPRSLVLIPKAL 197
Query: 432 SIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVL 491
+ F G A+ V+ S G+ P
Sbjct: 198 QPHADRVDEDVYTFVGACQGDRAEEGGWQR----PAGAEKVVLVSLGSAF---TKQPAFY 250
Query: 492 NAFVESFSKIKQKILWKT-------DVEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGG 544
V +F + L E+P NV V +W PQ IL LF+TH G
Sbjct: 251 RECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQ--ADLFVTHAG 308
Query: 545 IHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDK 604
+ E P++ +P DQF N ++Q G+ R + + +D++ E A++ D
Sbjct: 309 AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDP 368
Query: 605 TYAANAKRISAIMKSSPVSSLEKAVYWTEYVIRHEGAHFLKPASTR 650
A +RI A M + + E RHE +P R
Sbjct: 369 EVARRLRRIQAEMAQEGGTRRAADLIEAELPARHERQ---EPVGDR 411
Score = 86.0 bits (213), Expect = 6e-18
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 69 YVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRV 126
+VP + + LF+TH G + E P++ +P DQF N ++Q G+ R
Sbjct: 290 WVPQLAIL---RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARK 346
Query: 127 IDMDSLDSDVVVEAVNAVLGDKTI 150
+ + +D++ E A++ D +
Sbjct: 347 LATEEATADLLRETALALVDDPEV 370
Score = 43.6 bits (103), Expect = 2e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 17 DASNILAFFPMALNSHIKPFQPLLYELSRRGHNVT 51
++I F +A + H+ P ++ EL RGH VT
Sbjct: 6 TPAHIA-MFSIAAHGHVNPSLEVIRELVARGHRVT 39
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 180 bits (458), Expect = 3e-50
Identities = 68/376 (18%), Positives = 121/376 (32%), Gaps = 44/376 (11%)
Query: 274 ADLIGLFHSLCLAQMEQVLRTPEIQTFVQRDDSHFDLVIIE-GTFCGECLLAMGHKYKAP 332
+GLF + + Q+ D DL++ + ++ +L K+ P
Sbjct: 84 ESAMGLFLDEAVRVLPQLED--------AYADDRPDLIVYDIASWPAP-VLG--RKWDIP 132
Query: 333 VINFQPLGYWPSNYYVYGNLLSPAVIPDFRLPSTTQMNFWGRLDSLWFAVTDLFLTNLFY 392
+ P +P + P+ + A +
Sbjct: 133 FVQLSPT--------FVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLV 184
Query: 393 YPKQVALMDKYFKYPGYQSRPP--MVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMH 450
+ + + G + ++ R I I + N F G +
Sbjct: 185 RF--FTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIK---GDTVGDNYTFVGPTY 239
Query: 451 IKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTD 510
+ + V+ + G+ + + + ++
Sbjct: 240 GDRSHQGTWEGP----GDGRPVLLIALGSA---FTDHLDFYRTCLSAVDGLDWHVVLSVG 292
Query: 511 VEV------EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGF 564
V EVPPNV V W PQ DIL F+TH G+ S MEA + VP+V +P
Sbjct: 293 RFVDPADLGEVPPNVEVHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQI 350
Query: 565 SDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSS 624
++Q N + E GLGR I D + ++ + EAV AV D A + ++ +
Sbjct: 351 AEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEIREAG--G 408
Query: 625 LEKAVYWTEYVIRHEG 640
A E ++ G
Sbjct: 409 ARAAADILEGILAEAG 424
Score = 87.5 bits (217), Expect = 2e-18
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 57 PPPPGVDNYTYVYVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN 114
PP V + +VP + F+TH G+ S MEA + VP+V +P ++Q N
Sbjct: 302 EVPPNV--EVHQWVPQLDIL---TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMN 356
Query: 115 VLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTITD 152
+ E GLGR I D + ++ + EAV AV D + +
Sbjct: 357 AERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAE 394
Score = 38.6 bits (90), Expect = 0.007
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
+FF + + H+ P ++ EL RGH V+
Sbjct: 16 SFFNIPGHGHVNPSLGIVQELVARGHRVS 44
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 151 bits (384), Expect = 3e-40
Identities = 65/380 (17%), Positives = 112/380 (29%), Gaps = 68/380 (17%)
Query: 274 ADLIGLFHSLCLAQMEQVLRTPEIQTFVQRDDSHFDLVIIEGTFCGECLLAMGHKYKAPV 333
L ++ +A + D+ DLV+ + + ++ P
Sbjct: 77 TQLHLVYVRENVAILRAAEEA--------LGDNPPDLVVYDVFPFI-AGRLLAARWDRPA 127
Query: 334 INFQPLGYWPSNYYVYGNLLSPAVIPDFRLPSTTQMNFWGRLDSLWFAVTDLFLTNLFYY 393
+ A + L + R + AV + +
Sbjct: 128 VRLTG---------------GFAANEHYSLFKELWKSNGQRHPADVEAVHSVLV------ 166
Query: 394 PKQVALMDKYFKYPGYQSRPPMVDML---RNISMT---FLEHDISIGVPQALTPNMLFTG 447
L+ KY G + I F + F G
Sbjct: 167 ----DLLGKY----GVDTPVKEYWDEIEGLTIVFLPKSFQPF------AETFDERFAFVG 212
Query: 448 GMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILW 507
+ P V+ S G N P A ++F+ ++
Sbjct: 213 PT-LTGRDGQPGWQP---PRPDAPVLLVSLGN---QFNEHPEFFRACAQAFADTPWHVVM 265
Query: 508 KTDVEV------EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMM 561
+ +PPNV W P +L H R LTHG + +EA GVP+V++
Sbjct: 266 AIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLV 323
Query: 562 PGFS-DQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSS 620
P F+ + + + E GLG V+ D L+ + EAV + D +R+ + SS
Sbjct: 324 PHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSS 383
Query: 621 PVSSLEKAVYWTEYVIRHEG 640
+A E +
Sbjct: 384 G--GPARAADEVEAYLGRVA 401
Score = 79.4 bits (196), Expect = 6e-16
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 69 YVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFS-DQFQNVLLMQEKGLGR 125
++P + + R LTHG + +EA GVP+V++P F+ + + + E GLG
Sbjct: 288 WIPFHSVL---AHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 126 VIDMDSLDSDVVVEAVNAVLGD 147
V+ D L+ + EAV + D
Sbjct: 345 VLRPDQLEPASIREAVERLAAD 366
Score = 38.9 bits (91), Expect = 0.004
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 15 HIDASNILAFFPMALNSHIKPFQPLLYELSRRGHNVT 51
H+ +IL F + + H+ P L+ EL+RRGH +T
Sbjct: 1 HMRQRHIL-FANVQGHGHVYPSLGLVSELARRGHRIT 36
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 137 bits (346), Expect = 4e-35
Identities = 65/372 (17%), Positives = 113/372 (30%), Gaps = 55/372 (14%)
Query: 274 ADLIGLFHSLCLAQMEQVLRTPEIQTFVQRDDSHFDLVIIEGTFCGECLLAMGHKYKAPV 333
DL H + L + VL + D DLV+ + + +++ P
Sbjct: 89 DDLGVRPHLMYLRENVSVL--RATAEALDGD--VPDLVLYDDFPFI-AGQLLAARWRRPA 143
Query: 334 INFQP-LGYWPSNYYVYGNLLSPAVIPDFRLPSTT-QMNFWGRLDSLWFAVTDLFLTNLF 391
+ + + I LP + L +V D +
Sbjct: 144 VRLSAAFASNEHYSFSQDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWN---H 200
Query: 392 YYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHI 451
+ + K F+ +F G
Sbjct: 201 VEQLNLVFVPKAFQIA----------------------------GDTFDDRFVFVGPC-F 231
Query: 452 KHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDV 511
+ L E V+ S GT N P +F ++
Sbjct: 232 DDRRFLGEWTR---PADDLPVVLVSLGT---TFNDRPGFFRDCARAFDGQPWHVVMTLGG 285
Query: 512 EV------EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFS 565
+V ++PPNV W P +L + +THGG+ + MEA Y G P+V++P
Sbjct: 286 QVDPAALGDLPPNVEAHRWVPHVKVLEQ--ATVCVTHGGMGTLMEALYWGRPLVVVPQSF 343
Query: 566 DQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSSL 625
D + + GLG V+ + D D ++ AV AV D A + + ++ +
Sbjct: 344 DVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAG--GA 401
Query: 626 EKAVYWTEYVIR 637
+A E +
Sbjct: 402 ARAADAVEAYLA 413
Score = 79.4 bits (196), Expect = 7e-16
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 57 PPPPGVDNYTYVYVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN 114
PP V + +VPH + + + +THGG+ + MEA Y G P+V++P D
Sbjct: 294 DLPPNV--EAHRWVPHVKVL---EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPM 348
Query: 115 VLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGD 147
+ + GLG V+ + D D ++ AV AV D
Sbjct: 349 ARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD 381
Score = 35.4 bits (82), Expect = 0.061
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 19 SNILAFFPMALNSHIKPFQPLLYELSRRGHNVT 51
+++L +A + I P ++ EL RRGH V+
Sbjct: 21 AHLL-IVNVASHGLILPTLTVVTELVRRGHRVS 52
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 124 bits (313), Expect = 8e-31
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 441 PNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSK 500
P + LP L + P +++ + GT + VL A ++ +
Sbjct: 215 PRRHELRPVPFAEQGDLPAWLSSRDTARP--LVYLTLGT---SSGGTVEVLRAAIDGLAG 269
Query: 501 IKQKIL----WKTDVEV--EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYH 554
+ +L DV EVP NV + +W PQA +L H L + HGG + + A
Sbjct: 270 LDADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGA 327
Query: 555 GVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRIS 614
GVP + P D F N + + G G + D++ D V A +L +++Y A A+ ++
Sbjct: 328 GVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVA 387
Query: 615 AIMKSSPVSSLEKAV 629
A + + P ++ V
Sbjct: 388 AEIAAMP--GPDEVV 400
Score = 75.1 bits (185), Expect = 1e-14
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 15/130 (11%)
Query: 28 ALNSHIKPFQPLLYELSRRGHNV-------TEVSSFPPPPGVDNYTYV-YVPH--LFNGH 77
+ ++ + + L+ +V +VS P N +VP L
Sbjct: 252 SSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVP--ANVRLESWVPQAALL--- 306
Query: 78 KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVV 137
+ L + HGG + + A GVP + P D F N + + G G + D++ D V
Sbjct: 307 PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSV 366
Query: 138 VEAVNAVLGD 147
A +L +
Sbjct: 367 SGAAKRLLAE 376
Score = 32.4 bits (74), Expect = 0.48
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
F + + H P PL GH VT
Sbjct: 24 LFASLGTHGHTYPLLPLATAARAAGHEVT 52
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 117 bits (295), Expect = 2e-28
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 456 PLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKT-----D 510
+PE L + + + G + R ++ + + + + +I+ +
Sbjct: 256 VVPEWLHD---EPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLE 312
Query: 511 VEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN 570
+P NV + P +L C + HGG S A HGVP V++P D
Sbjct: 313 GVANIPDNVRTVGFVPMHALLPT--CAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVR 370
Query: 571 VLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
QE G G + + L D + E+V VL D + A A R+ M + P
Sbjct: 371 AQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEP 421
Score = 74.5 bits (183), Expect = 3e-14
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 57 PPPPGVDNYTYVYVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN 114
P V T +VP L C + HGG S A HGVP V++P D
Sbjct: 316 NIPDNV--RTVGFVPMHALL---PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVR 370
Query: 115 VLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGD 147
QE G G + + L D + E+V VL D
Sbjct: 371 AQRTQEFGAGIALPVPELTPDQLRESVKRVLDD 403
Score = 32.5 bits (74), Expect = 0.53
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
F MA SH+ PL + GH V
Sbjct: 24 VFSSMASKSHLFGLVPLAWAFRAAGHEVR 52
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 107 bits (269), Expect = 3e-25
Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 10/182 (5%)
Query: 467 DAPHGVIFFSFGT--NVRFANMPPYVLNAFVESFSKIKQKIL----WKTDVEVEVPPNVL 520
+ + G+ + L + + +++ +
Sbjct: 207 RDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQA 266
Query: 521 VRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLG 580
W P + C L + H G S + GVP +++P S + + G
Sbjct: 267 RVGWTPLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAA 324
Query: 581 RVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSSLEKAVYWTEYVIRHEG 640
+ ++ + ++ + TYA A+ +S + P V E + H
Sbjct: 325 IALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMP--LPATVVTALEQLAHHHH 382
Query: 641 AH 642
H
Sbjct: 383 HH 384
Score = 73.7 bits (181), Expect = 4e-14
Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 13/133 (9%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNV------TEVSSFPPPPGVDNYTYVYVPH--LF 74
+ + + + L +L R + T + + P +
Sbjct: 220 RVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEV--PQARVGWTPLDVVA 277
Query: 75 NGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDS 134
C L + H G S + GVP +++P S + + G + +
Sbjct: 278 ---PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDST 334
Query: 135 DVVVEAVNAVLGD 147
+ + ++ +
Sbjct: 335 EAIADSCQELQAK 347
Score = 30.9 bits (70), Expect = 1.4
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
F + + PL GH V
Sbjct: 4 LFVAAGSPATVFALAPLATAARNAGHQVV 32
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 105 bits (265), Expect = 1e-24
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 467 DAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV------------- 513
+ + +FGT R + + + Q L K EV
Sbjct: 224 ERKQPRLCLTFGT--RVPLPNTNTIPGGLSLLQALSQ-ELPKLGFEVVVAVSDKLAQTLQ 280
Query: 514 EVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLL 573
+P VL FP + I+ C + + HGG + + GVP V +P ++ + + L
Sbjct: 281 PLPEGVLAAGQFPLSAIMPA--CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL 338
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP-----VSSLEKA 628
+ G G + + + V+ A + D +Y NA+R++A M + P V +E+A
Sbjct: 339 LHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQA 398
Score = 71.3 bits (175), Expect = 3e-13
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 51 TEVSSFPPPPGVDNYTYV-YVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPG 107
+ P P + P + C + + HGG + + GVP V +P
Sbjct: 274 KLAQTLQPLP--EGVLAAGQFPLSAIM---PACDVVVHHGGHGTTLTCLSEGVPQVSVPV 328
Query: 108 FSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGD 147
++ + + L+ G G + + + V+ A + D
Sbjct: 329 IAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 368
Score = 31.2 bits (71), Expect = 1.3
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
+ P PL + L GH V
Sbjct: 19 LVIAGCSEGFVMPLVPLSWALRAAGHEVL 47
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 103 bits (258), Expect = 7e-24
Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 30/178 (16%)
Query: 472 VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV-------------EVPPN 518
+ G V A P +L A + VE ++P N
Sbjct: 220 RVCICMGRMVLNATGPAPLLRAVAAATEL--------PGVEAVIAVPPEHRALLTDLPDN 271
Query: 519 VLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKG 578
+ P L C L + GG +A A G+P +++P + DQF + G
Sbjct: 272 ARIAESVPLNLFLRT--CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAG 329
Query: 579 LGRVIDMD--SLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP-----VSSLEKAV 629
G + + D + +++ VLGD +AA A ++S + + P V +LE
Sbjct: 330 AGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLENTA 387
Score = 67.1 bits (164), Expect = 5e-12
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 57 PPPPGVDNYTYVYVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN 114
P VP + C L + GG +A A G+P +++P + DQF
Sbjct: 267 DLPDNA--RIAESVPLNLFL---RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDY 321
Query: 115 VLLMQEKGLGRVIDMD--SLDSDVVVEAVNAVLGD 147
+ G G + + D + +++ VLGD
Sbjct: 322 ARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGD 356
Score = 32.1 bits (73), Expect = 0.64
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
P+ +H+ PL + L GH V
Sbjct: 5 LVVPLPYPTHLMAMVPLCWALQASGHEVL 33
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 100 bits (250), Expect = 1e-22
Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 14/232 (6%)
Query: 414 PMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVI 473
+ ++ D + Q + + TG + +PL +L ++ P +
Sbjct: 183 EDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGP-PPV 241
Query: 474 FFSFGTNVRFANMPPYVLNAFVESFSKIKQKIL----WKTDVEVEVPPNVLVRNWFPQAD 529
+ FG+ P + +++ ++++ W V + +
Sbjct: 242 YLGFGS----LGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQV 297
Query: 530 ILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLD 589
+ G + HGG + A G P +++P +DQ + E G+G D
Sbjct: 298 LFGR--VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPT 355
Query: 590 SDVVVEAVNAVLGDKTYAANAKRISAIMKSSPVSSLEKAVYWTEYVIRHEGA 641
D + A+ L + A A ++ +++ + A + V R +
Sbjct: 356 FDSLSAALATALTPE-THARATAVAGTIRTDGAA--VAARLLLDAVSREKPT 404
Score = 62.2 bits (151), Expect = 2e-10
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 57 PPPPGVDNYTYVYVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN 114
+ V H LF + HGG + A G P +++P +DQ
Sbjct: 282 DDGADC--FAIGEVNHQVLF---GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYY 336
Query: 115 VLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTI 150
+ E G+G D D + A+ L +T
Sbjct: 337 AGRVAELGVGVAHDGPIPTFDSLSAALATALTPETH 372
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 98.0 bits (244), Expect = 6e-22
Identities = 30/192 (15%), Positives = 68/192 (35%), Gaps = 12/192 (6%)
Query: 436 PQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFV 495
+ + TG + +PL +LE ++ ++ FG+ A +
Sbjct: 188 LRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGS-PPVYVGFGSGPAPAEA----ARVAI 242
Query: 496 ESFSKIKQKIL----WKTDVEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEA 551
E+ ++++ W ++ + LV + G + HGG +
Sbjct: 243 EAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLFGR--VAAVVHHGGAGTTTAV 300
Query: 552 GYHGVPVVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAK 611
G P V++P +DQ + + G+G D + + + A+ L A A
Sbjct: 301 TRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALTPG-IRARAA 359
Query: 612 RISAIMKSSPVS 623
++ +++ +
Sbjct: 360 AVAGTIRTDGTT 371
Score = 64.1 bits (156), Expect = 5e-11
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 54 SSFPPPPGVDNYTYV-YVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQF 112
+ D+ V V H + HGG + G P V++P +DQ
Sbjct: 259 AGLGRIDEGDDCLVVGEVNHQV-LFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQP 317
Query: 113 QNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKT 149
+ + G+G D + + + A+ L
Sbjct: 318 YYAGRVADLGVGVAHDGPTPTVESLSAALATALTPGI 354
Score = 29.5 bits (66), Expect = 4.4
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 32 HIKPFQPLLYELSRRGHNVT 51
+P L L G +
Sbjct: 13 DTEPLVALAARLRELGADAR 32
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 96.1 bits (239), Expect = 3e-21
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 26/163 (15%)
Query: 472 VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV-------------EVPPN 518
+ + GT A + + + + D + +P N
Sbjct: 234 EVAITMGTIELQAF-GIGAVEPIIAAAGE--------VDADFVLALGDLDISPLGTLPRN 284
Query: 519 VLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKG 578
V W P +L C + HGG + M A G+P ++ P DQFQ+
Sbjct: 285 VRAVGWTPLHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSR 342
Query: 579 LGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP 621
G + S V + + ++GD++ A+ + M + P
Sbjct: 343 RGIGLVSTS--DKVDADLLRRLIGDESLRTAAREVREEMVALP 383
Score = 64.1 bits (156), Expect = 6e-11
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 57 PPPPGVDNYTYV-YVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQ 113
P N V + P L + C + HGG + M A G+P ++ P DQFQ
Sbjct: 277 PLGTLPRNVRAVGWTPLHTLL---RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQ 333
Query: 114 NVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGD 147
+ G + S V + + ++GD
Sbjct: 334 HTAREAVSRRGIGLVSTS--DKVDADLLRRLIGD 365
Score = 32.5 bits (74), Expect = 0.49
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 23 AFFPMALNSHIKPFQPLLYELSRRGHNVT 51
F H+ P L + GH+V
Sbjct: 24 LFVSSPGIGHLFPLIQLAWGFRTAGHDVL 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 91.8 bits (228), Expect = 6e-20
Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 10/179 (5%)
Query: 445 FTGGMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQK 504
TG + +PLP +LE +++ + FG++ VE+ ++
Sbjct: 213 QTGAWLLSDERPLPPELEAFLAAGS-PPVHIGFGSSSGRG--IADAAKVAVEAIRAQGRR 269
Query: 505 IL----WKTDVEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVM 560
++ W V + + + + + HG + A GVP ++
Sbjct: 270 VILSRGWTELVLPDDRDDCFAIDEVNFQALFRR--VAAVIHHGSAGTEHVATRAGVPQLV 327
Query: 561 MPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKS 619
+P +DQ + G+G D + + + A+ VL + A A+ ++ ++ +
Sbjct: 328 IPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPE-TRARAEAVAGMVLT 385
Score = 61.4 bits (149), Expect = 4e-10
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 54 SSFPPPPGVDNYTYV-YVPH--LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSD 110
+ P D+ + V LF + + HG + A GVP +++P +D
Sbjct: 277 TELVLPDDRDDCFAIDEVNFQALF---RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTD 333
Query: 111 QFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKT 149
Q + G+G D + + + A+ VL +T
Sbjct: 334 QPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPET 372
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 70.3 bits (173), Expect = 7e-13
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 21/196 (10%)
Query: 425 TF--LEHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYM----SDAPHGVIFFSFG 478
+F L+ + ++ L G ++ P+ + + P V++ SFG
Sbjct: 221 SFEELDDSL-TNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFG 279
Query: 479 TNVRFANMPPYVLNAFVESFSKIKQKILW--KTDVEVEVPPNVLVR--------NWFPQA 528
T PP + A E+ + +W + V +P L + W PQA
Sbjct: 280 T---VTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQA 336
Query: 529 DILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEK-GLGRVIDMDS 587
++L H+ F+TH G +S E+ GVP++ P F DQ N ++++ +G I+
Sbjct: 337 EVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGV 396
Query: 588 LDSDVVVEAVNAVLGD 603
++ + +L
Sbjct: 397 FTKSGLMSCFDQILSQ 412
Score = 49.5 bits (119), Expect = 3e-06
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEK-GLGRVIDMDSLDSDVVVEAV 141
F+TH G +S E+ GVP++ P F DQ N ++++ +G I+ ++
Sbjct: 347 FVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCF 406
Query: 142 NAVLGD 147
+ +L
Sbjct: 407 DQILSQ 412
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 66.1 bits (162), Expect = 1e-11
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 21/196 (10%)
Query: 425 TF--LEHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMS--DA--PHGVIFFSFG 478
+F + I + +L G ++ + D + D V++ SFG
Sbjct: 223 SFATIHPLI-ENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFG 281
Query: 479 TNVRFANMPPYVLNAFVESFSKIKQKILW--KTDVEVEVPPNVLVR--------NWFPQA 528
+ PP+ L A ES + +W + D + ++P L R W PQ
Sbjct: 282 S---VVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQV 338
Query: 529 DILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN-VLLMQEKGLGRVIDMDS 587
+IL H + +FLTH G +S +E GVP++ P F DQ N +L +G +D
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV 398
Query: 588 LDSDVVVEAVNAVLGD 603
L + + +A+ +
Sbjct: 399 LTKESIKKALELTMSS 414
Score = 47.6 bits (114), Expect = 1e-05
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN-VLLMQEKGLGRVIDMDSLDSDVVVEAV 141
FLTH G +S +E GVP++ P F DQ N +L +G +D L + + +A+
Sbjct: 349 FLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKAL 408
Query: 142 NAVLGD 147
+
Sbjct: 409 ELTMSS 414
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 64.2 bits (157), Expect = 5e-11
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 520 LVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN-VLLMQEKG 578
++ W PQ ++L HK F++H G +S +E+ + GVP++ P +++Q N L++E G
Sbjct: 335 MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWG 394
Query: 579 LGRVIDMDSLDSDVVVEA 596
+G + +D VV A
Sbjct: 395 VGLGLRVDYRKGSDVVAA 412
Score = 49.9 bits (120), Expect = 2e-06
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN-VLLMQEKGLGRVIDMDSLDSDVVVEA 140
F++H G +S +E+ + GVP++ P +++Q N L++E G+G + +D VV A
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAA 412
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 61.2 bits (149), Expect = 6e-10
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 472 VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILW------KTDVEVEVPPNV------ 519
V++ +FG+ M P L F + K+ LW V
Sbjct: 297 VVYVNFGS---TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIAD 353
Query: 520 --LVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEK 577
L+ +W PQ +L H + FLTH G +S E+ GVP++ P F+DQ + + +
Sbjct: 354 RGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNE 413
Query: 578 -GLGRVIDMDSLDSDVVVEAVNAVLGDK 604
+G ID + + + + + +N V+
Sbjct: 414 WEIGMEIDTN-VKREELAKLINEVIAGD 440
Score = 49.2 bits (118), Expect = 3e-06
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEK-GLGRVIDMDSLDSDVVVEAV 141
FLTH G +S E+ GVP++ P F+DQ + + + +G ID + + + + + +
Sbjct: 375 FLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN-VKREELAKLI 433
Query: 142 NAVLGDK 148
N V+
Sbjct: 434 NEVIAGD 440
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 1e-09
Identities = 69/594 (11%), Positives = 156/594 (26%), Gaps = 173/594 (29%)
Query: 194 RRCRHASEMSNPEMAVYL------------EKEHLRDAEESDYHLMEEIIHTRFNNKEAG 241
H + ++ + + +Y + I T
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 242 SDA-----DK-FDNNAFF--LTVN-EETASEIRANFRNRTHADLIGLFHSL------CLA 286
+ D+ +++N F V+ + ++R A + + + +A
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVA 167
Query: 287 QMEQVLRTPEIQTF---------VQRDDSHFDLVIIEGTFC---GECLLAMGHKYKAPVI 334
V + ++Q ++ +S ++ + + +
Sbjct: 168 L--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 335 NFQPLGYWPSNYYV---YGN-LL------SPAVIPDFRLPS----TTQMNFWGRLDSLWF 380
+ Y N LL + F L TT+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-------FK--- 275
Query: 381 AVTDLFLTNLFYYPKQVALMDKYFKYPGYQSRPPMVDMLR---NISMTFLEHDISIGVPQ 437
VTD FL+ + + + +L + L ++ P+
Sbjct: 276 QVTD-FLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 438 ALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVES 497
L +++ I+ ++ + D +I S + P +
Sbjct: 329 RL--SII---AESIRDGLATWDNWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDR 377
Query: 498 FSKIKQKILWKTDVEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVP 557
S + +P +L WF + V
Sbjct: 378 LS-----VF---PPSAHIPTILLSLIWF------------------------DVIKSDVM 405
Query: 558 VVMMPGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISA-- 615
VV+ ++ L++++ I + S+ ++ V+ + YA + +
Sbjct: 406 VVV-----NKLHKYSLVEKQPKESTISIPSIYLELKVKL------ENEYALHRSIVDHYN 454
Query: 616 IMKSSPVSSLEKAV---YWTEYV-----------------------------IRHEGAHF 643
I K+ L Y+ ++ IRH+ +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 644 LKPASTRLSLVQ-------FLCLDILLVVISVMAAMLFVLFKCGQVLLRAKKKD 690
S L+ +Q ++C + V A + F L K + L+ +K D
Sbjct: 515 NASGSI-LNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTD 566
Score = 37.1 bits (85), Expect = 0.023
Identities = 33/229 (14%), Positives = 62/229 (27%), Gaps = 86/229 (37%)
Query: 2 IRLTLIFLGVLLCHIDASNILAFFPMALNSHIKPFQPLL--YELSRRGHNVTEVSSFPPP 59
I + I+L L ++ L H ++ Y + + + PP
Sbjct: 426 ISIPSIYL-ELKVKLENEYAL---------HRS----IVDHYNIPKTFDS----DDLIPP 467
Query: 60 PGVDNYTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQ 119
+D Y Y ++ H H + M F F + ++
Sbjct: 468 Y-LDQYFYSHIGH----H--------------LKNIEHPE----RMTLFRMVFLDFRFLE 504
Query: 120 EKGLGRVIDMDSLDSDVVVEAVNAVLGD-----KTITDELETVCGLLSPPRSPRLLSP-- 172
+K I DS + +N L I D + P+ RL++
Sbjct: 505 QK-----IRHDSTAWNASGSILN-TLQQLKFYKPYICD---------NDPKYERLVNAIL 549
Query: 173 ---PVPGEIPPPSAISGGPTARNFRRCRHAS----EMSNPEMAVYLEKE 214
P E N ++ + + A++ E
Sbjct: 550 DFLPKIEE--------------NLICSKYTDLLRIALMAEDEAIFEEAH 584
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 58.0 bits (141), Expect = 6e-09
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 520 LVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN-VLLMQEKG 578
++ W PQA +L H + FLTH G +S +E+ G+P++ P +++Q N VLL ++
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 579 LGRVIDMDSLDSDVVVEA 596
D +V
Sbjct: 402 AALRPRA---GDDGLVRR 416
Score = 43.8 bits (104), Expect = 2e-04
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQN-VLLMQEKGLGRVIDMDSLDSDVVVEA 140
FLTH G +S +E+ G+P++ P +++Q N VLL ++ D +V
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRA---GDDGLVRR 416
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 7e-09
Identities = 100/649 (15%), Positives = 184/649 (28%), Gaps = 227/649 (34%)
Query: 75 NGHKNCR-LFLTHGGIHSAMEAGYHGVPVVMMPGFS---DQFQNVLLMQEKG-------- 122
+ + + R L L+HG + E VP S +QF +L +G
Sbjct: 2 DAY-STRPLTLSHGSL----EHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 123 -----LGRVID-MDSLDSDVVVEAVNAVLGDKTITDELET-----------VCGLLSPPR 165
+G+ + + SL V + VL E E LL
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVL--NLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 166 SPRLLSPPV-------------PGEIPPPSAISGGPTARNFRRCRHASEMSNPEMAV--- 209
+ + + + P + SA+ R E + +A+
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALF-----------RAVGEGNAQLVAIFGG 162
Query: 210 ------YLEKEHLRDAEESDYHLMEEIIHTRFNNKEAGSDADKFDNNAFFLTVNEETASE 263
Y E E LRD ++ + L+ ++I + T++E +
Sbjct: 163 QGNTDDYFE-E-LRDLYQTYHVLVGDLIKF------SAE------------TLSELIRTT 202
Query: 264 IRANFRNRTHADLIGLFHSLCLAQMEQVLRTPEIQTFVQRDDSHFDLVIIEGTFCGECLL 323
+ A + T GL + + L P D + L+ I + ++
Sbjct: 203 LDAE-KVFTQ----GL-------NILEWLENPS-----NTPDKDY-LLSIPISCPLIGVI 244
Query: 324 AMGHKYKAPVINFQPLGYWPSNYY--------VYGNLLSPAVIPDFRLPSTTQMNFWGRL 375
+ H Y V+ + LG+ P L++ I + + W
Sbjct: 245 QLAH-Y---VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI----AETDS----W--- 289
Query: 376 DSLWFAVTDLFLTNLFY--YPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISI 433
+S +F +T LF+ A YP P +++ LE++
Sbjct: 290 ES-FFVSVRKAITVLFFIGVRCYEA-------YPNTSLPPSILE-------DSLENNE-- 332
Query: 434 GVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVIFFSFGTNVRFANM----PPY 489
GVP +P ML + + + ++ + S N N+ PP
Sbjct: 333 GVP---SP-MLSISNLTQEQVQDYVNKTNSHLPAGKQ--VEISL-VNGA-KNLVVSGPPQ 384
Query: 490 VLNAFVESFSKIKQKILWKTDVEVEVPPNVLVRNWFPQADILGHKNCRLFLTHGGI---- 545
L + K K D + +P F + + FL +
Sbjct: 385 SLYGLNLTLRKAKAPS--GLD-QSRIP--------FSERKLKFSNR---FLP---VASPF 427
Query: 546 HSA-MEAGYHGVPVVMMPGFSDQFQNVLLMQEKGL---------GRVIDMDSLDSDVVVE 595
HS + + D +N + K + G D+ L +
Sbjct: 428 HSHLLVPASDLIN-------KDLVKNNVSFNAKDIQIPVYDTFDGS--DLRVLSGSISER 478
Query: 596 AVNAVLGDKTYAANAKRISAIMKSSPVSSLEKAVYWTEYVIRHEGAHFL 644
V+ + + V W + + H L
Sbjct: 479 IVDCI------------------------IRLPVKWET-TTQFKATHIL 502
Score = 48.1 bits (114), Expect = 9e-06
Identities = 51/313 (16%), Positives = 92/313 (29%), Gaps = 101/313 (32%)
Query: 360 DFRLPSTTQMNFWGRLD-----SLWFAVTDLFLTNLFYYPKQVALMDKYFKYPGYQSRPP 414
D S + W R D + F++ D+ + N P + + +F G + +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN----PVNLTI---HF--GGEKGK-- 1682
Query: 415 MVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMSDAPHGVIF 474
+R + I G + +F K + E Y + G++
Sbjct: 1683 ---RIRENYSAMIFETIVDGKLKTEK---IF---------KEINEHSTSYTFRSEKGLLS 1727
Query: 475 FSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVEVPPNVLVRNWFPQADILGH- 533
T +F P + +F +K K L +P + A GH
Sbjct: 1728 A---T--QFTQ--PALTLMEKAAFEDLKSKGL--------IPADATF------A---GHS 1763
Query: 534 -----------------KNCRLFLTHGG--IHSAMEAGYHGVPVVMM----PGFSDQFQN 570
+ + + G + A+ G M PG +
Sbjct: 1764 LGEYAALASLADVMSIESLVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINPG-----RV 1817
Query: 571 VLLMQEKGLGRVIDMDSLDSDVVVEAVN--------AVLGDK------TYAANAKRISAI 616
++ L V++ + +VE VN GD T N ++ I
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 617 -MKSSPVS-SLEK 627
+ S SLE+
Sbjct: 1878 DIIELQKSLSLEE 1890
Score = 37.7 bits (87), Expect = 0.014
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 20/86 (23%)
Query: 89 IHSAMEAGYHGVPVVMM----PGFSDQFQNVLLMQEKGLGRVIDMDSLDSDVVVEAVN-- 142
+ A+ G M PG + ++ L V++ + +VE VN
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPG-----RVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 143 ------AVLGDKTITDELETVCGLLS 162
GD L+TV +L+
Sbjct: 1848 VENQQYVAAGDL---RALDTVTNVLN 1870
Score = 35.4 bits (81), Expect = 0.082
Identities = 59/331 (17%), Positives = 95/331 (28%), Gaps = 139/331 (41%)
Query: 9 LGVLLCHIDASNILAFFPMALNSHIKP---------FQPLLYELSRRGHNVTEVSSFPPP 59
G + I +N P+ L H + +++E G TE
Sbjct: 1657 YGFSILDIVINN-----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE----KIF 1707
Query: 60 PGVDNYTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQF-QNVLL- 117
++ ++ Y F K L T QF Q L
Sbjct: 1708 KEINEHSTSYT---FRSEKG-LLSAT-------------------------QFTQPALTL 1738
Query: 118 --------MQEKGLGRVIDMDSLDSDVVV------E-----AVNAVLGDKTITDELETVC 158
++ KGL + +D E ++ V+ +I +E V
Sbjct: 1739 MEKAAFEDLKSKGL--------IPADATFAGHSLGEYAALASLADVM---SIESLVEVVF 1787
Query: 159 --GLLSPPRSPRLLSPPVPGEIPPPSAISGGPTARNFRRCRHASEMS--NP-EMAVYLEK 213
G + VP + S M NP +A +
Sbjct: 1788 YRG--------MTMQVAVPRDELGRSNYG----------------MIAINPGRVAASFSQ 1823
Query: 214 EHLRD-----AEESDYHLMEEIIHTRFN-NKE------AGSDADKFDNNAFFLTVNEETA 261
E L+ + + + + EI+ N N E AG D A L +T
Sbjct: 1824 EALQYVVERVGKRTGWLV--EIV----NYNVENQQYVAAG------DLRA--L----DTV 1865
Query: 262 SEIRANFRNRTHADLIGLFHSLCLAQMEQVL 292
+ + NF D+I L SL L ++E L
Sbjct: 1866 TNV-LNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 32.7 bits (74), Expect = 0.57
Identities = 44/245 (17%), Positives = 75/245 (30%), Gaps = 86/245 (35%)
Query: 119 QEKGLGRVIDMDSLDSDVVVEAV--NAVLGDKTITDELETVCGLLSPPRSPRLLSPPVPG 176
QE+G+G MD + + V A D D G +L
Sbjct: 1627 QEQGMG----MDLYKTSKAAQDVWNRA---DNHFKDTY----GF-------SIL------ 1662
Query: 177 EI----PPPSAIS-GGPTARNFRRCRHASEMSNPEMAVYLEKEHLRDAEESDYHLMEEII 231
+I P I GG + R E + E + D + + +EI
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIR-----------ENYSAMIFETIVDGKLKTEKIFKEI- 1710
Query: 232 HTRFNNKEAGSDADKFDNNAFFLTVNEET------AS-----EIRANFRNRTHADLIGLF 280
N+ + S + + T T ++++ A G
Sbjct: 1711 -----NEHSTSYTFRSEKGLLSATQF--TQPALTLMEKAAFEDLKSKGLIPADATFAG-- 1761
Query: 281 HSL-------CLAQM---EQVL-----RTPEIQTFVQRDD---SHFDLV-----IIEGTF 317
HSL LA + E ++ R +Q V RD+ S++ ++ + +F
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 318 CGECL 322
E L
Sbjct: 1822 SQEAL 1826
Score = 30.4 bits (68), Expect = 2.5
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 575 QEKGLGRVIDMDSLDSDVVVEAV--NAVLGDK-TYAANAKRISAIMKSSPVSSLEKAVY 630
QE+G+G MD + + V A D I I+ ++PV ++
Sbjct: 1627 QEQGMG----MDLYKTSKAAQDVWNRA---DNHFKDTYGFSILDIVINNPV---NLTIH 1675
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 37.1 bits (85), Expect = 0.012
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 5/129 (3%)
Query: 19 SNILAFFPMALNSHIKPFQPLLYELSRRGHNVTEVSSFPPPPGVDNYTYVYVPHLFNGHK 78
N + F + + + + G T + + + + + +
Sbjct: 71 RNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIR 130
Query: 79 N-CRLFLTHGGIHSAMEAGYHGVPVVMMPGFS----DQFQNVLLMQEKGLGRVIDMDSLD 133
+ L ++H G S +++ P+++ S Q Q E G
Sbjct: 131 DYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAPTETG 190
Query: 134 SDVVVEAVN 142
+ A
Sbjct: 191 LIAGLRASQ 199
Score = 31.7 bits (71), Expect = 0.58
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
Query: 518 NVLVRNWFPQADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFS----DQFQNVLL 573
V+ ++ + + L ++H G S +++ P+++ S Q Q
Sbjct: 115 KVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADK 174
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMK 618
E G + A ++ ++
Sbjct: 175 FVELGYVWSCAPTETGLIAGLRASQTEKLKPFPVSHNPSFERLLV 219
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 35.7 bits (83), Expect = 0.046
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 539 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNV--LLMQEKGLGRVIDMDSLDSDVVVEA 596
F+ GG H+ +E G+PV+ P ++ L +E V + L V
Sbjct: 287 FVNIGG-HNLLEPTCWGIPVIYGPYTHK-VNDLKEFLEKEGAGFEVKNETEL-----VTK 339
Query: 597 VNAVLGDKTYAANAKRISAIMKS 619
+ +L K ++ I
Sbjct: 340 LTELLSVKKEIKVEEKSREIKGC 362
Score = 31.4 bits (72), Expect = 0.87
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 83 FLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNV--LLMQEKGLGRVIDMDSLDSDVVVEA 140
F+ GG H+ +E G+PV+ P ++ L +E V + L V
Sbjct: 287 FVNIGG-HNLLEPTCWGIPVIYGPYTHK-VNDLKEFLEKEGAGFEVKNETEL-----VTK 339
Query: 141 VNAVLGDKT 149
+ +L K
Sbjct: 340 LTELLSVKK 348
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 33.6 bits (76), Expect = 0.25
Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 36/204 (17%)
Query: 475 FSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVEVPPNVLVR------------ 522
+ + + P L + ++ +LW PN+
Sbjct: 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRII 583
Query: 523 --NWFPQADILG-HKNCRLFLT---HGGIHSAMEAGYHGVPVVMMPGFSDQFQN---VLL 573
P+ + + + + L G + M+ + G P+V MPG + +
Sbjct: 584 FSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPG--ETLASRVAASQ 641
Query: 574 MQEKGLGRVIDMDSLDSDVVVEAVNAVLGDKTYAANAKRISAIMKSSP-------VSSLE 626
+ G +I + + AV + ++ SSP LE
Sbjct: 642 LTCLGCLELIAKN--RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELE 699
Query: 627 KAVY---WTEYVIRHEGAHFLKPA 647
+ Y W Y ++ H +KP
Sbjct: 700 RL-YLQMWEHYAAGNKPDHMIKPV 722
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.66
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 18/46 (39%)
Query: 452 KHA-KPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVE 496
K A K L L+ Y D+ A P + A +E
Sbjct: 19 KQALKKLQASLKLYADDS---------------A--PALAIKATME 47
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 31.0 bits (70), Expect = 1.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 528 ADILGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQ 569
+L + R L G +H + A + G+PV +
Sbjct: 204 GRVLRGTDVRAIL-AGHLHYSTNATFVGIPVSVASATCYTQD 244
Score = 28.7 bits (64), Expect = 6.3
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 11/44 (25%)
Query: 70 VPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQ 113
V + GH +H + A + G+PV +
Sbjct: 212 VRAILAGH-----------LHYSTNATFVGIPVSVASATCYTQD 244
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 30.9 bits (70), Expect = 1.4
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 521 VRNWFPQADIL-GHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQF 568
N ++ + G HS Y + +PG Q
Sbjct: 172 CENGHRLLALVERFPSLTRIF-CGHNHSLTMTQYRQALISTLPGTVHQV 219
Score = 29.8 bits (67), Expect = 2.6
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 73 LFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQF 112
L + G HS Y + +PG Q
Sbjct: 181 LVERFPSLTRIF-CGHNHSLTMTQYRQALISTLPGTVHQV 219
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A
{Actinobacillus pleuropneumoniae serovaorganism_taxid}
PDB: 3q3h_A* 3q3i_A
Length = 631
Score = 30.7 bits (69), Expect = 2.0
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 22/130 (16%)
Query: 455 KPLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVE 514
PE ++ + + P V T ++ PY L A + K K+ + +
Sbjct: 425 ALAPEKVDYLLRENPEVVNIGIASTTMKLN---PYFLEALKAIRDRAKVKVHFHFALGQS 481
Query: 515 ---------------VPPNVLVRNWFPQADILG-HKNCRLFL---THGGIHSAMEAGYHG 555
+ + P L NC + + G + ++ G
Sbjct: 482 NGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLG 541
Query: 556 VPVVMMPGFS 565
+ V G
Sbjct: 542 LVGVCKTGAE 551
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 30.2 bits (68), Expect = 3.1
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 22/132 (16%)
Query: 453 HAKPLPEDLEKYMSDAPHG-VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDV 511
++ + E + P V+ F + P + + ++ +LW
Sbjct: 358 TSRVVAEPPSRTQCGLPEQGVVLCCFN---NSYKLNPQSMARMLAVLREVPDSVLWLLSG 414
Query: 512 EVEVPPN--------------VLVRNWFPQADILG-HKNCRLFL---THGGIHSAMEAGY 553
E ++ P L +++ LFL + +A +A +
Sbjct: 415 PGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALW 474
Query: 554 HGVPVVMMPGFS 565
G PV+ PG +
Sbjct: 475 TGCPVLTTPGET 486
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 30.0 bits (68), Expect = 3.5
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 453 HAKPLPEDLEKYMSDAP------HGVIFFSFG----TNVRFANMPPYVLNAFV 495
H + +M P + +G V + +PP ++AF+
Sbjct: 4 HHHHENLYFQSHMLLKPLQVYTADNQLIAEYGGKLSIPVEYKQIPPNFIHAFL 56
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 3.8
Identities = 12/75 (16%), Positives = 17/75 (22%), Gaps = 29/75 (38%)
Query: 258 EETASEIRANFRNRTHADLIGLFHSLCLAQMEQVLRTPE---IQTFVQRDDSHFDLVIIE 314
++ A N C PE + S D+V
Sbjct: 8 DKRAGRRGPNLNIVLT----------C----------PECKVYPPKIVERFSEGDVV--- 44
Query: 315 GTFCGECLLAMGHKY 329
C C L + K
Sbjct: 45 ---CALCGLVLSDKL 56
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 29.3 bits (64), Expect = 4.1
Identities = 5/59 (8%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 65 YTYVYVPHLFNGHKNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGL 123
++ ++ + EA + +Q + +KG
Sbjct: 211 RLFIDHENIAKLMNESNKLIISASS-LVNEALLLKANFKAICYVKNQESTATWLAKKGY 268
Score = 28.6 bits (62), Expect = 7.2
Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 9/234 (3%)
Query: 350 GNLLSPAVIPDFRLPSTTQMNFWGRLDSL---WFAVTDLFLTNLFYYPKQVALMDKYFKY 406
G+L+ P + L S + + + ++ ++ K +
Sbjct: 40 GSLIDEIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSF 99
Query: 407 PGYQSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPEDLEKYMS 466
D+L N++ D VP + G + + ++ ++
Sbjct: 100 DDEIKPHH-CDILLNVNAYAKASDYEGLVPF---KCEVRCGFSYALIREEFYQEAKENRK 155
Query: 467 DAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVEVPPNVLVRNWFP 526
I + L ++ + +R +
Sbjct: 156 KKYDFFICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFID 215
Query: 527 QADILGH-KNCRLFLTHGGIHSAMEAGYHGVPVVMMPGFSDQFQNVLLMQEKGL 579
+I + EA + +Q + +KG
Sbjct: 216 HENIAKLMNESNKLIISASS-LVNEALLLKANFKAICYVKNQESTATWLAKKGY 268
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 28.3 bits (64), Expect = 5.8
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 31/126 (24%)
Query: 456 PLPEDLEKYMSDAPHGVIFFSFGTNVRFANMPPY--VLNAFVESFSKIKQKILW------ 507
P + K+ +G + S R P + +E F K++ + L+
Sbjct: 9 SHPVETSKF-KFKCYGDFWLSVN---RIY---PEKRIELQ-LEVFKKLQDEKLYIVGWFS 60
Query: 508 --------KTDVEVEVPPNVLVRNWFPQADILGH-KNCRLFLT-----HGGIHSAMEAGY 553
+ P NV + +++ C+ L G+ + +EA
Sbjct: 61 KGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGL-TPIEAMA 119
Query: 554 HGVPVV 559
G PV+
Sbjct: 120 SGKPVI 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,226,095
Number of extensions: 713166
Number of successful extensions: 1691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1650
Number of HSP's successfully gapped: 89
Length of query: 703
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 603
Effective length of database: 3,909,693
Effective search space: 2357544879
Effective search space used: 2357544879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.4 bits)