BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16994
(932 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF--SIKLVKVDPGSEEL 211
++DL+ S +E V+ G + SV T +N SSRSH +F +I+ +V E
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248
Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
I + ++ DLAG+ERQ + G+RL+EA IN SL L + L + K
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------KSTH 302
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
IP+RDSKLT++ Q SL G + TV M+ NV + EET+ L+ ++ A+++
Sbjct: 303 IPYRDSKLTRLLQDSLGGNAKTV-MVANVGPASYNVEETLTTLRYANRAKNI 353
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 72 STFENVLEV---LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM 128
++++ V++V L Q S+ K+ K + + + F +Y + Q EL+ +
Sbjct: 39 ASYDKVVDVDVKLGQVSV-----KNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93
Query: 129 LERYLNGEDALLFSFGTTNSGKTFTIQDL 157
++ L G + +F++G T +GKT+T++ +
Sbjct: 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGI 122
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK--VDPGSEEL 211
++ L + V S +E Y V+R G + +VA T +N SSRSH +F I + + V+ GS +
Sbjct: 169 VKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAK- 227
Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
+ DLAG+E+ + SG L EA+ IN SL L N L + K
Sbjct: 228 --SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KSSH 279
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
+P+RDSKLT+I Q SL G S T +I+N + S ET+ L+ A+ +
Sbjct: 280 VPYRDSKLTRILQESLGGNSRTT-LIINCSPSSYNDAETLSTLRFGMRAKSI 330
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 100 DTCNL--------YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKT 151
DTC + + F ++ Q+++F + ++ LNG + +F++G T +GK+
Sbjct: 36 DTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKS 95
Query: 152 FTI 154
+T+
Sbjct: 96 YTM 98
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHS 164
Y F ++G T Q ++++++V +L+ + G +A +F++G T +GKTFT++ N
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 165 CEE 167
C E
Sbjct: 126 CWE 128
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 198 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 255
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 256 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 308
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 309 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 362
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 68 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 118
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 195 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 252
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 253 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 305
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 306 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 359
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 65 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 115
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 187 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 244
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 297
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 298 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 351
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 253
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 306
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 360
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV--DPGSEEL 211
++DLT V V EE R +R G +VA T++N SSRSH VF+I L ++ D +++
Sbjct: 229 VKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDT 288
Query: 212 IMMSS-FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL--------RENN 262
SS + DLAG+ER K +G RLRE IN SL L R L R ++
Sbjct: 289 TERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSS 348
Query: 263 GLKADKKK-------LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
+K+ + + ++P+RDS LT + + SL G S T MI + SP +ET+ L+
Sbjct: 349 PVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA-MIACI--SPTDYDETLSTLR 405
Query: 316 ISSVARDLLTVA 327
+ A+ + T A
Sbjct: 406 YADQAKRIRTRA 417
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL----VKVDPGSE 209
I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +D E
Sbjct: 181 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID--GE 238
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
EL+ + ++ DLAG+E R+ R REA IN SL L R L E +
Sbjct: 239 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RT 291
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+P+R+SKLT+I Q SL G + T +I ++ + EET+ L+ + A+++L
Sbjct: 292 PHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETLSTLEYAHRAKNIL 345
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 51 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 101
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 12/213 (5%)
Query: 111 YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYR 170
Y + AE++ ++ ++L + ++ L SG+ + + LT V S ++ +
Sbjct: 128 YTITVSAAEIYNEVLRDLLGK--EPQEKLEIRLCPDGSGQLY-VPGLTEFQVQSVDDINK 184
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
V FG ++ + T LN SSRSH + + + VD S L ++ DLAG+ER +
Sbjct: 185 VFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC-STGLRTTGKLNLVDLAGSERVGK 243
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
+ G RLREA+ IN SL L LR G +PFR+SKLT + Q SLSG
Sbjct: 244 SGAEGSRLREAQHINKSLSALGDVIAALRSRQG-------HVPFRNSKLTYLLQDSLSGD 296
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
S T+ M+V V+ ET+ LK + R +
Sbjct: 297 SKTL-MVVQVSPVEKNTSETLYSLKFAERVRSV 328
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ ++ P +Q ++FQ V ++ ++G + +F++G T +GKT+T++
Sbjct: 50 FELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
KT I ++T + S + +VL+ S A T N SSRSH +F I L + G+
Sbjct: 198 KTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTG 257
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
E ++ DLAG+ER + G+RLRE ++IN SL L + L +G +K
Sbjct: 258 EK-SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG----QK 312
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
+ IPFR+SKLT + Q SL G S T+ M VN++ + + ET+ L+ +S
Sbjct: 313 RHIPFRNSKLTYLLQYSLIGSSKTL-MFVNISPAALHLNETINSLRFAS 360
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ T E+F+ V +++ L+G + +F++G T SGKT+T+
Sbjct: 76 FKFDKIFDQQETNDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTM 124
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 160 VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI----------KLVKVDPGSE 209
V+V +E +L G + T LNH SSRSH VF++ +L + PG
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ- 239
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
+++S F DLAG+ER + ++G+RL+E+ INSSL L + L G +
Sbjct: 240 --LLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL----GDPQRRG 293
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
IP+RDSK+T+I + SL G + TV MI V+ S + +ET+ L +S A+
Sbjct: 294 SHIPYRDSKITRILKDSLGGNAKTV-MIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 111 YGPHTTQAE------LFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNV 162
+G H AE ++Q V +LE + G +A +F++G T SGKT+T+ + + ++
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASL 109
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 151 TFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--S 208
+ IQ L + VHS ++ Y++L GK A T +N +SSRSH VFSI + + G
Sbjct: 194 SVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG 253
Query: 209 EELIMMSSFDICDLAGAERQKRAHT-SGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
E+++ + ++ DLAG+E +A G R+RE IN SL L R L D
Sbjct: 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL-------VD 306
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
+ +P+R+SKLT++ Q SL G + T +I ++ EET+ L+ + A+++
Sbjct: 307 RAPHVPYRESKLTRLLQESLGGRTKT-SIIATISPGHKDIEETLSTLEYAHRAKNI 361
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F +GP + Q +++ +V ++E LNG + +F++G T +GKT T+
Sbjct: 69 FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
S A T N SSRSH +F I L GS S+ ++ DLAG+ER + GD
Sbjct: 260 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 315
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
RLRE + IN SL L + L G K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 316 RLRETQNINKSLSALGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 370
Query: 297 IVNVNASPAYAEETVQVLKISS 318
VN++ S ++ ET+ L+ +S
Sbjct: 371 FVNISPSSSHINETLNSLRFAS 392
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 76 NVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNG 135
NV E D + + M+ K T + ++F I+ T ++F+ V +++ L+G
Sbjct: 83 NVNEFDDNSGV--QSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDG 139
Query: 136 EDALLFSFGTTNSGKTFTI 154
+ +F++G T SGKTFT+
Sbjct: 140 YNVAIFAYGQTGSGKTFTM 158
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 148 SGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG 207
+GKT T+ +++ +++ S E+A +L S A T+ N SSRSH +F I L G
Sbjct: 545 AGKT-TVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL----QG 599
Query: 208 SEELIMMSSF---DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
L SS+ ++ DLAG+ER + GDRL+E + IN SL L + L +G
Sbjct: 600 YNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDG- 658
Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
+P+R+SKLT + + SL G S T+ M VN++ ET+ L+ ++
Sbjct: 659 -----SHVPYRNSKLTYLLKHSLGGNSKTL-MFVNISPLTKDLNETINSLRFAT 706
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 128 MLERYLNGEDALLFSFGTTNSGKTFTIQDLT 158
+++ L+G + +F++G T SGKTFT+ T
Sbjct: 454 LIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT 484
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
S A T N SSRSH +F I L GS S+ ++ DLAG+ER + GD
Sbjct: 215 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 270
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
RLRE + IN SL L + L G K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 271 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 325
Query: 297 IVNVNASPAYAEETVQVLKISS 318
VN++ S ++ ET+ L+ +S
Sbjct: 326 FVNISPSSSHINETLNSLRFAS 347
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ T ++F+ V +++ L+G + +F++G T SGKTFT+
Sbjct: 65 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 113
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
S A T N SSRSH +F I L GS S+ ++ DLAG+ER + GD
Sbjct: 203 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 258
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
RLRE + IN SL L + L G K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 259 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 313
Query: 297 IVNVNASPAYAEETVQVLKISS 318
VN++ S ++ ET+ L+ +S
Sbjct: 314 FVNISPSSSHINETLNSLRFAS 335
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ T ++F+ V +++ L+G + +F++G T SGKTFT+
Sbjct: 53 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 101
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 10/176 (5%)
Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
G F ++++T + + + EE +L G V+ T +N SSRSH + S+ + +D +
Sbjct: 171 GMVF-VENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQT 229
Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
+ DLAG+ER K++ ++G++L+EA++IN SL L L N
Sbjct: 230 QS-AARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN------ 282
Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+ IP+R+ KLT + SL G + T+ M VNV+ + + +ET L +S R ++
Sbjct: 283 -QHIPYRNHKLTMLMSDSLGGNAKTL-MFVNVSPAESNLDETYNSLLYASRVRTIV 336
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 107 FSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ ++ +Q ++F++ + +++ ++G + +F++G T SGKTFTI
Sbjct: 59 YDRVFDMRASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTI 105
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 7/176 (3%)
Query: 150 KTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE 209
K + LT S EE +L G + + PT++N SSRSH VF I L + D +
Sbjct: 185 KGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244
Query: 210 --ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
+ + ++ + DLAG+ER + G R E IN SL L N L ++
Sbjct: 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK----R 300
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
K + IP+R+SKLT++ + SL G T+ MI V+ S + ++T LK ++ A+D+
Sbjct: 301 KNQHIPYRNSKLTRLLKDSLGGNCQTI-MIAAVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 71 GSTFENVLEVLDQKSIMFKPMKD----MKCSITDTCNL---------YRFSNIYGPHTTQ 117
+ F V+ V+D+ ++F P ++ T N+ + F ++ +TQ
Sbjct: 27 AAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQ 86
Query: 118 AELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+E+F++ +L +LNG + + ++G T +GKT T+
Sbjct: 87 SEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL------VKVDPG 207
+ L+ + V S ++ ++ G +VA T +N SSRSH VF I L VK
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239
Query: 208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
E++ +S + DLAG+ER + +GDRL+E IN SL L + L + + K +
Sbjct: 240 GEKVGKLS---LVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGK-N 295
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
K K +P+RDS LT + + SL G S T M+ V+ + +ET+ L+ + A+
Sbjct: 296 KNKFVPYRDSVLTWLLKDSLGGNSKTA-MVATVSPAADNYDETLSTLRYADRAK 348
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 114 HTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ Q +F+ + N+L+ +G +A +F++G T SGK++T+
Sbjct: 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
I ++T + + S + +L+ S A T N RSSRSH VF + + + + E
Sbjct: 181 ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGE-TS 239
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
++ DLAG+ER + +G+RLRE + IN SL L L + K+ IP
Sbjct: 240 QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA----GKRYIP 295
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
FR+SKLT + Q SL G S T+ M VN+ P + ET+ L+ +S
Sbjct: 296 FRNSKLTYLLQYSLVGDSKTL-MFVNIPPDPNHISETLNSLRFAS 339
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ P T E+F+ I +++ L+G + +F++G T SGKT+T+
Sbjct: 55 FQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
S A T N SSRSH +F I L GS S+ ++ DLAG+ R + GD
Sbjct: 204 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGD 259
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
RLRE + IN SL L + L G K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 260 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 314
Query: 297 IVNVNASPAYAEETVQVLKISS 318
VN++ S ++ ET+ L+ +S
Sbjct: 315 FVNISPSSSHINETLNSLRFAS 336
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ T ++F+ V +++ L+G + +F++G T SGKTFT+
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 160 VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI----------KLVKVDPGSE 209
V+V +E +L G + T LNH SSRSH VF++ +L + PG
Sbjct: 181 VDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQ- 239
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
+++S F DLAG+ER + ++G+ +E+ INSSL L + L G +
Sbjct: 240 --LLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISAL----GDPQRRG 293
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
IP+RDSK+T+I + SL G + TV MI V+ S + +ET+ L +S A+
Sbjct: 294 SNIPYRDSKITRILKDSLGGNAKTV-MIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 111 YGPHTTQAE------LFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNV 162
+G H AE ++Q V +LE + G +A +F++G T SGKT+T+ + + ++
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASL 109
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
S A T N SS SH +F I L GS S+ ++ DLAG+ER + GD
Sbjct: 204 STASTASNEHSSASHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 259
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
RLRE + IN SL L + L G K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 260 RLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 314
Query: 297 IVNVNASPAYAEETVQVLKISS 318
VN++ S ++ ET+ L+ +S
Sbjct: 315 FVNISPSSSHINETLNSLRFAS 336
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ T ++F+ V +++ L+G + +F++G T SGKTFT+
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF---DICDLAGAERQKRAHTSGD 236
S A T N SSRSH +F I L GS S+ ++ DLAG+ER + GD
Sbjct: 204 STASTASNEHSSRSHSIFIIHL----SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 259
Query: 237 RLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296
RLRE + I SL L + L G K+ IPFR+SKLT + Q SL+G S T+ M
Sbjct: 260 RLRETQNIKKSLSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL-M 314
Query: 297 IVNVNASPAYAEETVQVLKISS 318
VN++ S ++ ET+ L+ +S
Sbjct: 315 FVNISPSSSHINETLNSLRFAS 336
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F I+ T ++F+ V +++ L+G + +F++G T SGKTFT+
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+S +++++T V++ + EE +++ G T +N +SSRSH + S+ +++
Sbjct: 160 DSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSV-IIESTN 218
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
+ I DLAG+ER K++ ++G++L+EA++IN SL L + L N
Sbjct: 219 LQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN---- 274
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324
+ IP+R+ KLT + SL G + T+ M VN++ + + +ET L +S R ++
Sbjct: 275 ---QHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHNSLTYASRVRSIV 328
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 100 DTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
D + + ++ + TQ ++F++ + +++ ++G + +F++G T SGKTFTI
Sbjct: 44 DKAKQHMYDRVFDGNATQDDVFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTI 97
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG----SE 209
+ DLT V++ E A + + G+ T++N RSSRSH +F + L + G E
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
+ +S ++ DLAG+ER + +G RL+E IN SL +L + L +
Sbjct: 223 GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-----GQVG 277
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
I +RDSKLT+I Q SL G + T ++I + +P +ET+ L+ +S A+
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKT-RIICTI--TPVSFDETLTALQFASTAK 326
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F ++ + T +++ I +++ + G + +F++G T SGKT+T+
Sbjct: 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 77/149 (51%), Gaps = 10/149 (6%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V S E+ + V+ GKS+ +A T +N SSRSH VF I VK + + + + D
Sbjct: 180 VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLIN-VKQENLENQKKLSGKLYLVD 238
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
LAG+E+ + G L EA+ IN SL L + L + N K IP+RDSKLT+
Sbjct: 239 LAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN------KTHIPYRDSKLTR 292
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
I Q SL G + T +I SPA E+
Sbjct: 293 ILQESLGGNARTTIVIC---CSPASFNES 318
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELIMMSSFDICDLAG 224
E+A+ +L G+++ +A +N SSRSHC+F+I L SEE + S ++ DLAG
Sbjct: 208 EDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAG 267
Query: 225 AERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQ 284
+ER ++ + G L+EA IN SL L + L + K+ IPFR KLT +
Sbjct: 268 SERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ------KRDHIPFRQCKLTHALK 321
Query: 285 RSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
SL G + V ++ N+ A EET+ L+ +S
Sbjct: 322 DSLGGNCNMV-LVTNIYGEAAQLEETLSSLRFAS 354
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG----SE 209
+ L+ V + E ++ G ++ VA T++N SSRSH +F +V+++ ++
Sbjct: 173 VDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIF---MVRIECSEVIENK 229
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
E+I + ++ DLAG+ERQ + +G+ L E IN SL L + L E
Sbjct: 230 EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-------A 282
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
IP+RDSKLT++ Q SL G S T+ M N++ + +ET+ L+ + A+ +
Sbjct: 283 THIPYRDSKLTRLLQDSLGGNSKTL-MCANISPASTNYDETMSTLRYADRAKQI 335
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F +Y + +FQ +++ L G ++ +F++G T +GKT+T+
Sbjct: 58 FTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53 QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
AF+ + ++ Q+ AG ++ + + DQ+ I+ + +D+ I DT N N+
Sbjct: 100 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 155
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
Y + E++ V ++L G E LL + ++DL+ + V S
Sbjct: 156 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 205
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
+ ++ G +VA T +N SSRSH VF+I + +E I +S + DL
Sbjct: 206 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 265
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
AG+ER G RL+E IN SL L + + L E + K K IP+RDS
Sbjct: 266 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 325
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
LT + + +L G S T M+ ++ + +ET+ L+ + A+ +
Sbjct: 326 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 370
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 105 YRFSNIYGPHTT--------QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F Y HT+ Q +++++I ML+ G + +F++G T +GK++T+
Sbjct: 66 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 123
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 16/149 (10%)
Query: 180 SVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM----SSFDICDLAGAERQKRAHTSG 235
+V T LN RSSRSH V LVKVD E L + DLAG+E +R G
Sbjct: 212 TVGATRLNQRSSRSHAVL---LVKVD-QRERLAPFRQREGKLYLIDLAGSEDNRRTGNKG 267
Query: 236 DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295
RL+E+ IN+SL VL + + L N GL +P+RDSKLT++ Q SL G + ++
Sbjct: 268 LRLKESGAINTSLFVLGKVVDAL--NQGLPR-----VPYRDSKLTRLLQDSLGGSAHSI- 319
Query: 296 MIVNVNASPAYAEETVQVLKISSVARDLL 324
+I N+ + +TV L ++ +++++
Sbjct: 320 LIANIAPERRFYLDTVSALNFAARSKEVI 348
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
Y+F YG +TQ +++ V +L L G++A + ++G T +GKT T+
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53 QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
AF+ + ++ Q+ AG ++ + + DQ+ I+ + +D+ I DT N N+
Sbjct: 84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 139
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
Y + E++ V ++L G E LL + ++DL+ + V S
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 189
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
+ ++ G +VA T +N SSRSH VF+I + +E I +S + DL
Sbjct: 190 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
AG+ER G RL+E IN SL L + + L E + K K IP+RDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
LT + + +L G S T M+ ++ + +ET+ L+ + A+ +
Sbjct: 310 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 354
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 105 YRFSNIYGPHTT--------QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F Y HT+ Q +++++I ML+ G + +F++G T +GK++T+
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 17/158 (10%)
Query: 152 FTIQDLTYVNVHSCE-EAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE 210
T+ + YV V SCE E +L + + +VA T N RSSRSH VF ++ + + S
Sbjct: 210 LTVTNARYVPV-SCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ-ISGEHSSRG 267
Query: 211 LIMMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENNGLKA 266
L + + DLAG+ER G +RLRE + INSSL L L +
Sbjct: 268 LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL-------S 320
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 304
+K+ +P+R+SKLT + Q SL G + KM++ VN SP
Sbjct: 321 NKESHVPYRNSKLTYLLQNSLGG---SAKMLMFVNISP 355
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156
+ F ++ P + Q E+F+ I +++ L+G +F++G T SGKTFT++
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEG 135
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53 QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
AF+ + ++ Q+ AG ++ + + DQ+ I+ + +D+ I DT N N+
Sbjct: 84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 139
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
Y + E++ V ++L G E LL + ++DL+ + V S
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 189
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
+ ++ G +VA T +N SSRSH VF+I + +E I +S + DL
Sbjct: 190 NDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
AG+ER G RL+E IN SL L + + L E + K K IP+RDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
LT + + +L G S T M+ ++ + +ET+ L+ + A+ +
Sbjct: 310 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 354
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 105 YRFSNIYGPHTT--------QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F Y HT+ Q +++++I ML+ G + +F++G T +GK++T+
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)
Query: 53 QAFDVKKQILNSFDQSYAGSTFENVL-EVLDQKSIMFKPMKDMKCSITDTCNLYRFSNI- 110
AF+ + ++ Q+ AG ++ + + DQ+ I+ + +D+ I DT N N+
Sbjct: 84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTN----DNMS 139
Query: 111 YGPHTTQAELFQNIVHNMLERYLNG-----EDALLFSFGTTNSGKTFTIQDLTYVNVHSC 165
Y + E++ V ++L G E LL + ++DL+ + V S
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY----------VEDLSKLAVTSY 189
Query: 166 EEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM---MSSFDICDL 222
+ ++ G +VA T +N SSRSH VF+I + +E I +S + DL
Sbjct: 190 NDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADKKKLIPFRDS 277
AG+ER G RL+E IN SL L + + L E + K K IP+RDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 278 KLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
LT + + +L G S T M+ ++ + +ET+ L+ + A+ +
Sbjct: 310 VLTWLLRENLGGNSRTA-MVAALSPADINYDETLSTLRYADRAKQI 354
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 105 YRFSNIYGPHTT--------QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F Y HT+ Q +++++I ML+ G + +F++G T +GK++T+
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 33/196 (16%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EEL 211
I+DL+ + +E V+ G +V T +N SSRSH +F I + + GS ++
Sbjct: 189 IKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDH 248
Query: 212 IMMSSFDICDLAGAERQKRA--HTSG----------------------DRLREARTINSS 247
I + ++ DLAG+ERQ +A +T+G +R +EA IN S
Sbjct: 249 IRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLS 308
Query: 248 LHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA 307
L L NV+ L ++ IP+RDSKLT++ Q SL G + T+ + AS +Y
Sbjct: 309 LSALG---NVIA---ALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSY- 361
Query: 308 EETVQVLKISSVARDL 323
+E++ L+ ++ A+++
Sbjct: 362 DESLSTLRFANRAKNI 377
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 91 MKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGK 150
+++ + + + + F +Y + QA+L+ V +++ L G + +F++G T +GK
Sbjct: 56 LRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGK 115
Query: 151 TFTIQDLTYV 160
T+T+Q T+V
Sbjct: 116 TYTMQG-TWV 124
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V S +E + GKS+ VA T +N SSRSH +F I VK + E + + D
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN-VKQENTQTEQKLSGKLYLVD 231
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
LAG+E+ + G L EA+ IN SL L + L A+ +P+RDSK+T+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMTR 284
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
I Q SL G T +I SP+ E+
Sbjct: 285 ILQDSLGGNCRTTIVIC---CSPSSYNES 310
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++ T+Q +++ + +++ L G + +F++G T+SGK T++
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTME 96
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V S +E + GKS+ VA T +N SSRSH +F I VK + E + + D
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN-VKQENTQTEQKLSGKLYLVD 231
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
LAG+E+ + G L EA+ IN SL L + L A+ +P+RDSK+T+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMTR 284
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
I Q SL G T +I SP+ E+
Sbjct: 285 ILQDSLGGNCRTTIVIC---CSPSSYNES 310
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++ T+Q +++ + +++ L G + +F++G T+SGKT T++
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V S +E + GKS+ VA T +N SSRSH +F I VK + E + + D
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLIN-VKQENTQTEQKLSGKLYLVD 231
Query: 222 LAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 281
LAG+E+ + G L EA+ IN SL L + L A+ +P+RDSK+T+
Sbjct: 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMTR 284
Query: 282 IFQRSLSGLSSTVKMIVNVNASPAYAEET 310
I Q SL G T +I SP+ E+
Sbjct: 285 ILQDSLGGNCRTTIVIC---CSPSSYNES 310
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++ T+Q +++ + +++ L G + +F++G T+SGKT T++
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V E+ +++ G S + T N SSRSH VF I L + + F + D
Sbjct: 271 VKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------LHGKFSLID 324
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
LAG ER ++ + R E IN SL L C L N K PFR SKLT
Sbjct: 325 LAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-------KPHTPFRASKLT 377
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
Q+ + S G +S MI ++ A E T+ L+ ++ ++L
Sbjct: 378 QVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
++ K + + A T N RSSRSH V ++L+ +E I + S ++ DLAG+E K
Sbjct: 251 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 308
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
+ R+ E + IN SL L L + K+ IP+R+SKLT + SL G
Sbjct: 309 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 358
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
S T+ M +NV+ +E+V+ L+ ++
Sbjct: 359 SKTL-MFINVSPFQDCFQESVKSLRFAA 385
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++ F ++ P ++Q+++F+ +V +++ L+G + +F++G T SGKT+T+
Sbjct: 115 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 164
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V+S ++ +++ G + + T N SSRSH F I L + M F + D
Sbjct: 233 VNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIIL------RAKGRMHGKFSLVD 286
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
LAG ER ++ + R E IN SL L C L +N K PFR+SKLT
Sbjct: 287 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLT 339
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
Q+ + S G +S MI ++ + E T+ L+ + ++L
Sbjct: 340 QVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
++ K + + A T N RSSRSH V ++L+ +E I + S ++ DLAG+E K
Sbjct: 243 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 300
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
+ R+ E + IN SL L L + K+ IP+R+SKLT + SL G
Sbjct: 301 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 350
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
S T+ M +NV+ +E+V+ L+ ++
Sbjct: 351 SKTL-MFINVSPFQDCFQESVKSLRFAA 377
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++ F ++ P ++Q+++F+ +V +++ L+G + +F++G T SGKT+T+
Sbjct: 107 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
++ K + + A T N RSSRSH V ++L+ +E I + S ++ DLAG+E K
Sbjct: 237 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 294
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
+ R+ E + IN SL L L + K+ IP+R+SKLT + SL G
Sbjct: 295 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 344
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
S T+ M +NV+ +E+V+ L+ ++
Sbjct: 345 SKTL-MFINVSPFQDCFQESVKSLRFAA 371
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++ F ++ P ++Q+++F+ +V +++ L+G + +F++G T SGKT+T+
Sbjct: 101 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 150
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
++ K + + A T N RSSRSH V ++L+ +E I + S ++ DLAG+E K
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 297
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
+ R+ E + IN SL L L + K+ IP+R+SKLT + SL G
Sbjct: 298 ---TSTRMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 347
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
S T+ M +NV+ +E+V+ L+ ++
Sbjct: 348 SKTL-MFINVSPFQDCFQESVKSLRFAA 374
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++ F ++ P ++Q+++F+ +V +++ L+G + +F++G + SGKT+T+
Sbjct: 104 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQSGSGKTYTM 153
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 13/148 (8%)
Query: 171 VLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKR 230
++ K + + A T N RSSRSH V ++L+ +E I + S ++ DLAG+E K
Sbjct: 240 LMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE-ISVGSINLVDLAGSESPK- 297
Query: 231 AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290
+ R+ E + I SL L L + K+ IP+R+SKLT + SL G
Sbjct: 298 ---TSTRMTETKNIKRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLLMPSLGGN 347
Query: 291 SSTVKMIVNVNASPAYAEETVQVLKISS 318
S T+ M +NV+ +E+V+ L+ ++
Sbjct: 348 SKTL-MFINVSPFQDCFQESVKSLRFAA 374
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++ F ++ P ++Q+++F+ +V +++ L+G + +F++G T SGKT+T+
Sbjct: 104 IFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTM 153
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V ++ +++ G + + T N SSRSH F I L + + F + D
Sbjct: 253 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL------RTKGRLHGKFSLVD 306
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
LAG ER ++ + R E IN SL L C L +N K PFR+SKLT
Sbjct: 307 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLT 359
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
Q+ + S G +S MI ++ + E T+ L+ + ++L
Sbjct: 360 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V ++ +++ G + + T N SSRSH F I L + + F + D
Sbjct: 181 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL------RTKGRLHGKFSLVD 234
Query: 222 LAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 280
LAG ER ++ + R E IN SL L C L +N K PFR+SKLT
Sbjct: 235 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLT 287
Query: 281 QIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
Q+ + S G +S MI ++ + E T+ L+ + ++L
Sbjct: 288 QVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 15/169 (8%)
Query: 155 QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214
Q T + +HS + + +L G + V PT +N SSRSH + +I + +
Sbjct: 182 QRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV-------KSKTHH 234
Query: 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274
S +I DLAG+E +R G +E IN L + + + A +IP+
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPY 287
Query: 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
RDS LT + Q SL+ S + + ++ ET+ L+ + A+ L
Sbjct: 288 RDSVLTTVLQASLTA-QSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
N K ++DL + V + EE + G + N SSRSH + +I L ++
Sbjct: 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK 225
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLK 265
+ + DLAG+ER + + + + IN SL L C + +
Sbjct: 226 NTS----LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD---- 277
Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISS 318
K IPFRDS+LT++ + G S ++ MI N++ + + E+T+ L+ SS
Sbjct: 278 ---KNHIPFRDSELTKVLRDIFVGKSKSI-MIANISPTISCCEQTLNTLRYSS 326
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 155 QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214
Q T + +HS + + +L G + V PT +N SSRSH + +I + +
Sbjct: 182 QRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV-------KSKTHH 234
Query: 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274
S +I DLAG+E +R G +E IN L + + + A +IP+
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPY 287
Query: 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
RDS LT + Q SL+ S + + ++ ET+ L+ + A+
Sbjct: 288 RDSVLTTVLQASLTA-QSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F + P+TTQ +++ +++ L G + +F++G T+SGKT T++
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICD 221
V S EE V+ GK++ VA T +N SSRSH +F I + + + +E+ + + + D
Sbjct: 173 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLY-LVD 231
Query: 222 LAGAER 227
LAG+E+
Sbjct: 232 LAGSEK 237
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 241 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300
A+ IN SL L + L E K +P+RDSK+T+I Q SL G T +I
Sbjct: 1 AKNINKSLSALGNVISALAEGT------KTHVPYRDSKMTRILQDSLDGNCRTTIVIC-- 52
Query: 301 NASPAYAEE 309
SP+ E
Sbjct: 53 -CSPSVFNE 60
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 245 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 304
N SL L + L E K +P+RDSK+T+I Q SL G T +I SP
Sbjct: 1 NKSLSALGNVISALAE------GTKTHVPYRDSKMTRILQDSLGGNCRTTIVIC---CSP 51
Query: 305 AYAEE 309
+ E
Sbjct: 52 SVFNE 56
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 167/371 (45%), Gaps = 69/371 (18%)
Query: 459 VKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
V Q+ E ++DE L + K + Q + EL ELE K+ L EE + KL+ T
Sbjct: 852 VTRQEEEMQAKDEELQRT------KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET 905
Query: 519 RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
+L + +E+ ++A + +EE +L E + +E+
Sbjct: 906 ----ELYAEAEEMRVRLAAKKQELEE-------------------ILHEMEARIEEEEER 942
Query: 579 IEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG-AEELQEKLDYMENKFQE 637
+QL++E +K+ +++ L E E Q+ L V DG +++++ + ME+ Q
Sbjct: 943 SQQLQAEKKKM-QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED--QN 999
Query: 638 ESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGD 697
L ER L+ + +DL +N AE + A KNL L + I +
Sbjct: 1000 NKLTKER------KLLEERVSDLTTNLAEEEEKA----------KNLTKLKNKHESMISE 1043
Query: 698 LKAKIHKYEKYYAVMKEDRKTKEKD-------IAELKTKCEELTQQVTKLEADCQSYLNT 750
L+ ++ K EK +++ ++ E + IAEL+ + EL Q+ K E + Q+ L
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 751 IKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLE 810
++ DE S K+N K ++ E + +Q++L K A+ K + ++ L
Sbjct: 1104 LE----DETSQKNNALKKIRELESHISDLQEDLESEKAARNK---------AEKQKRDLS 1150
Query: 811 DQVNSLKAELE 821
+++ +LK ELE
Sbjct: 1151 EELEALKTELE 1161
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 34/151 (22%)
Query: 531 LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL- 589
LE K+ QL R+++E +NK KSLL++ +TE E+LRS+VE+L
Sbjct: 926 LENKIMQLQRKIDE-------QNKE-----YKSLLEKMNNLEITYSTETEKLRSDVERLR 973
Query: 590 --SEERRLLTVRSAELEYELEQ-RDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLM 646
EE + T R L+ E+ + R L +T+ ++ ++ +K++ E+
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE-----KKTIEEWADKYKHET------- 1021
Query: 647 SEKENLISQLKAD---LESNRAESNQSAHDE 674
E L+S+LK L++ + E N+ HD+
Sbjct: 1022 ---EQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
>pdb|1NKN|A Chain A, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|1NKN|B Chain B, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|1NKN|C Chain C, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|1NKN|D Chain D, Visualizing An Unstable Coiled Coil: The Crystal Structure
Of An N-Terminal Segment Of The Scallop Myosin Rod
pdb|3BAS|A Chain A, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (C2) Form
pdb|3BAS|B Chain B, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (C2) Form
pdb|3BAT|A Chain A, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
pdb|3BAT|B Chain B, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
pdb|3BAT|C Chain C, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
pdb|3BAT|D Chain D, Crystal Structure Of The N-Terminal Region Of The Scallop
Myosin Rod, Monoclinic (P21) Form
Length = 89
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 495 ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
ELE + +L E+ D+ G +K+L + +L++KN LE +VA+L + V E
Sbjct: 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,135,359
Number of Sequences: 62578
Number of extensions: 956389
Number of successful extensions: 3770
Number of sequences better than 100.0: 245
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 3188
Number of HSP's gapped (non-prelim): 564
length of query: 932
length of database: 14,973,337
effective HSP length: 108
effective length of query: 824
effective length of database: 8,214,913
effective search space: 6769088312
effective search space used: 6769088312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)