Query psy16994
Match_columns 932
No_of_seqs 1058 out of 5028
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:01:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243|consensus 100.0 1.9E-65 4.1E-70 580.3 74.6 259 60-330 55-397 (1041)
2 KOG4280|consensus 100.0 2.5E-64 5.4E-69 548.6 21.8 265 60-334 11-347 (574)
3 KOG0247|consensus 100.0 1.2E-61 2.7E-66 522.3 37.5 264 60-329 37-442 (809)
4 KOG0245|consensus 100.0 4.9E-63 1.1E-67 547.5 26.1 267 60-333 10-358 (1221)
5 KOG0240|consensus 100.0 1.2E-60 2.5E-65 502.1 40.0 260 51-330 8-338 (607)
6 PLN03188 kinesin-12 family pro 100.0 5.4E-56 1.2E-60 507.9 75.0 255 60-332 104-443 (1320)
7 cd01368 KISc_KIF23_like Kinesi 100.0 2.5E-58 5.4E-63 498.6 28.1 265 51-321 2-345 (345)
8 cd01370 KISc_KIP3_like Kinesin 100.0 2.2E-58 4.8E-63 498.3 27.1 259 60-323 6-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 5.9E-58 1.3E-62 494.8 27.5 250 61-323 8-337 (337)
10 KOG0241|consensus 100.0 2.4E-57 5.2E-62 492.4 27.1 273 60-334 10-362 (1714)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.3E-56 7.1E-61 486.4 28.8 268 60-330 7-356 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 6E-56 1.3E-60 476.7 27.4 249 61-321 8-322 (322)
13 KOG0242|consensus 100.0 5.4E-57 1.2E-61 515.1 19.2 262 59-330 11-338 (675)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5E-55 1.1E-59 477.6 28.6 260 60-331 8-351 (352)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 6.5E-55 1.4E-59 471.6 27.9 254 60-323 7-333 (333)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.3E-54 2.7E-59 469.6 27.9 248 60-323 8-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 3E-54 6.4E-59 463.6 27.5 244 60-321 6-319 (319)
18 KOG0246|consensus 100.0 1.8E-54 3.9E-59 453.0 22.5 257 61-329 215-547 (676)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 9.9E-54 2.1E-58 461.2 26.7 248 60-323 6-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 2.2E-53 4.7E-58 463.8 27.6 249 60-324 7-341 (341)
21 KOG0239|consensus 100.0 3.7E-54 8.1E-59 489.2 20.7 264 50-330 314-647 (670)
22 cd01375 KISc_KIF9_like Kinesin 100.0 3.3E-53 7.2E-58 457.9 27.0 250 60-321 6-334 (334)
23 KOG0244|consensus 100.0 8.8E-51 1.9E-55 453.2 42.4 253 62-331 1-325 (913)
24 cd01366 KISc_C_terminal Kinesi 100.0 1.9E-51 4.2E-56 446.1 27.8 249 60-326 8-329 (329)
25 smart00129 KISc Kinesin motor, 100.0 9.4E-51 2E-55 442.9 28.9 259 60-329 6-334 (335)
26 cd00106 KISc Kinesin motor dom 100.0 1.3E-49 2.7E-54 433.6 28.7 252 60-321 6-328 (328)
27 PF00225 Kinesin: Kinesin moto 100.0 5.5E-51 1.2E-55 445.7 16.1 255 61-323 1-335 (335)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-43 2.5E-48 403.8 23.2 223 102-331 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 5E-43 1.1E-47 346.2 17.4 174 120-302 8-186 (186)
30 KOG0933|consensus 99.7 1.3E-10 2.8E-15 131.8 61.3 80 377-460 157-242 (1174)
31 KOG0161|consensus 99.7 1.3E-10 2.8E-15 145.0 63.1 19 134-152 165-183 (1930)
32 KOG0161|consensus 99.6 1.1E-09 2.5E-14 136.8 66.7 76 796-871 1286-1361(1930)
33 PRK02224 chromosome segregatio 99.6 2.2E-09 4.7E-14 133.9 62.4 34 842-875 649-682 (880)
34 PRK02224 chromosome segregatio 99.6 5.2E-09 1.1E-13 130.5 65.4 15 139-153 25-39 (880)
35 TIGR02168 SMC_prok_B chromosom 99.6 1.3E-10 2.8E-15 151.1 50.5 64 793-860 968-1035(1179)
36 TIGR02168 SMC_prok_B chromosom 99.5 1.5E-09 3.4E-14 141.1 52.3 16 139-154 25-40 (1179)
37 TIGR02169 SMC_prok_A chromosom 99.5 1.4E-09 3E-14 141.1 50.0 58 793-850 961-1018(1164)
38 COG1196 Smc Chromosome segrega 99.5 5.6E-07 1.2E-11 114.2 69.6 20 131-153 21-40 (1163)
39 COG1196 Smc Chromosome segrega 99.4 5.3E-09 1.1E-13 132.3 50.8 59 793-851 952-1010(1163)
40 KOG0996|consensus 99.4 8.9E-07 1.9E-11 103.2 62.9 11 143-153 114-124 (1293)
41 PF07888 CALCOCO1: Calcium bin 99.4 6.1E-08 1.3E-12 106.8 49.1 86 510-604 141-226 (546)
42 PRK03918 chromosome segregatio 99.4 5.5E-07 1.2E-11 112.8 64.8 14 141-154 27-40 (880)
43 TIGR02169 SMC_prok_A chromosom 99.4 1.7E-08 3.8E-13 130.9 53.1 13 141-153 27-39 (1164)
44 TIGR00606 rad50 rad50. This fa 99.4 2.3E-07 5.1E-12 119.1 59.8 32 730-761 986-1017(1311)
45 PF07888 CALCOCO1: Calcium bin 99.4 1.8E-07 3.9E-12 103.1 49.6 89 503-607 148-236 (546)
46 KOG0250|consensus 99.4 1.6E-06 3.5E-11 101.3 59.2 46 141-204 66-119 (1074)
47 KOG0250|consensus 99.4 8.4E-07 1.8E-11 103.6 56.8 55 803-857 754-808 (1074)
48 TIGR00606 rad50 rad50. This fa 99.4 5.3E-07 1.2E-11 115.9 61.5 39 558-596 824-862 (1311)
49 KOG4674|consensus 99.4 1.6E-06 3.5E-11 107.2 61.8 13 18-30 11-23 (1822)
50 KOG0996|consensus 99.4 3.4E-06 7.4E-11 98.5 60.4 70 807-876 945-1014(1293)
51 KOG4674|consensus 99.4 4.1E-06 9E-11 103.7 64.4 51 734-784 918-968 (1822)
52 PF10174 Cast: RIM-binding pro 99.3 2.4E-06 5.2E-11 100.0 59.9 11 838-848 527-537 (775)
53 PF10174 Cast: RIM-binding pro 99.3 4.1E-06 9E-11 98.1 61.6 49 802-850 553-601 (775)
54 PRK01156 chromosome segregatio 99.3 7.1E-06 1.5E-10 102.5 65.1 15 139-153 25-39 (895)
55 KOG0964|consensus 99.3 8.8E-06 1.9E-10 93.1 70.4 100 143-263 31-130 (1200)
56 KOG0964|consensus 99.2 2.3E-05 5E-10 89.8 58.6 36 834-869 787-822 (1200)
57 KOG0976|consensus 99.2 7.2E-06 1.6E-10 91.2 49.4 31 795-825 370-400 (1265)
58 KOG4643|consensus 99.2 1.1E-05 2.4E-10 92.5 50.7 29 561-589 262-290 (1195)
59 PF12128 DUF3584: Protein of u 99.2 0.0001 2.3E-09 93.9 65.9 9 135-143 79-87 (1201)
60 PF12128 DUF3584: Protein of u 99.2 8.6E-05 1.9E-09 94.7 65.1 15 139-153 19-33 (1201)
61 PF05701 WEMBL: Weak chloropla 99.1 6.7E-05 1.4E-09 86.4 55.0 15 739-753 306-320 (522)
62 PRK04778 septation ring format 99.1 4E-05 8.7E-10 89.6 53.2 49 794-842 459-507 (569)
63 PF01576 Myosin_tail_1: Myosin 99.1 1.5E-11 3.3E-16 148.2 0.0 362 485-872 139-501 (859)
64 KOG0933|consensus 99.1 1.4E-05 3.1E-10 91.8 46.7 115 653-767 817-931 (1174)
65 KOG0976|consensus 99.1 7.6E-05 1.7E-09 83.4 54.0 21 851-871 488-508 (1265)
66 KOG0971|consensus 99.1 9.9E-06 2.1E-10 91.6 43.4 12 104-115 57-68 (1243)
67 KOG4643|consensus 99.0 0.00015 3.2E-09 83.7 53.7 29 483-511 263-291 (1195)
68 KOG0971|consensus 99.0 1.5E-05 3.2E-10 90.2 42.9 20 489-508 229-248 (1243)
69 PF15070 GOLGA2L5: Putative go 98.9 0.00042 9.1E-09 80.1 56.4 17 915-931 587-603 (617)
70 PRK04778 septation ring format 98.9 0.00053 1.1E-08 80.3 53.4 9 532-540 171-179 (569)
71 PF09730 BicD: Microtubule-ass 98.9 0.00036 7.8E-09 80.9 49.0 66 805-870 399-464 (717)
72 KOG0977|consensus 98.9 3E-05 6.6E-10 86.0 38.2 74 793-869 306-379 (546)
73 KOG0994|consensus 98.9 0.00062 1.3E-08 79.4 55.8 54 819-872 1690-1743(1758)
74 KOG4673|consensus 98.8 0.00042 9.2E-09 76.5 50.4 49 806-854 713-761 (961)
75 PF01576 Myosin_tail_1: Myosin 98.8 5.6E-10 1.2E-14 134.9 0.0 87 795-881 417-503 (859)
76 PRK04863 mukB cell division pr 98.8 0.00073 1.6E-08 86.0 53.1 19 138-156 28-46 (1486)
77 KOG0612|consensus 98.8 0.00053 1.1E-08 81.3 47.2 30 828-857 789-818 (1317)
78 COG0419 SbcC ATPase involved i 98.8 0.0017 3.7E-08 81.0 70.2 53 137-202 25-79 (908)
79 PF00038 Filament: Intermediat 98.8 0.00016 3.5E-09 78.4 41.1 12 489-500 23-34 (312)
80 KOG0612|consensus 98.8 0.00057 1.2E-08 81.0 46.2 9 215-223 212-220 (1317)
81 PF15070 GOLGA2L5: Putative go 98.8 0.0008 1.7E-08 77.9 47.5 31 842-872 410-440 (617)
82 PRK04863 mukB cell division pr 98.7 0.00056 1.2E-08 87.0 47.8 32 487-518 296-327 (1486)
83 KOG0995|consensus 98.7 0.0011 2.3E-08 73.0 45.8 20 503-522 233-252 (581)
84 KOG0247|consensus 98.7 3.6E-09 7.9E-14 117.1 1.0 119 4-139 133-255 (809)
85 KOG0994|consensus 98.7 0.00056 1.2E-08 79.7 41.3 46 808-853 1693-1738(1758)
86 PF05483 SCP-1: Synaptonemal c 98.7 0.0015 3.3E-08 72.8 66.2 11 380-390 74-84 (786)
87 KOG0995|consensus 98.7 0.0015 3.2E-08 71.9 45.0 87 485-584 236-322 (581)
88 PF09730 BicD: Microtubule-ass 98.6 0.0031 6.7E-08 73.4 49.3 48 810-857 418-465 (717)
89 KOG1029|consensus 98.6 0.00025 5.4E-09 79.3 34.5 22 306-327 247-268 (1118)
90 KOG4673|consensus 98.6 0.0023 5.1E-08 70.9 58.5 30 485-514 410-439 (961)
91 KOG1029|consensus 98.5 0.0031 6.8E-08 70.9 39.0 8 18-25 19-26 (1118)
92 KOG0018|consensus 98.5 0.0085 1.8E-07 70.7 50.1 41 286-327 91-131 (1141)
93 PF09726 Macoilin: Transmembra 98.4 0.00039 8.5E-09 81.7 32.5 64 690-753 591-654 (697)
94 PF06160 EzrA: Septation ring 98.4 0.01 2.2E-07 69.3 53.1 19 850-868 469-487 (560)
95 PHA02562 46 endonuclease subun 98.4 0.0002 4.4E-09 85.0 30.5 15 138-152 28-42 (562)
96 PRK10246 exonuclease subunit S 98.4 0.024 5.3E-07 71.6 66.5 16 137-152 30-45 (1047)
97 PF09726 Macoilin: Transmembra 98.4 0.00082 1.8E-08 79.1 33.2 59 709-767 596-654 (697)
98 KOG0946|consensus 98.4 0.0013 2.8E-08 74.6 32.5 10 12-21 79-88 (970)
99 KOG0018|consensus 98.3 0.016 3.5E-07 68.4 55.7 10 143-152 31-40 (1141)
100 KOG0963|consensus 98.3 0.011 2.4E-07 65.9 49.7 50 824-873 389-438 (629)
101 PHA02562 46 endonuclease subun 98.3 0.00025 5.4E-09 84.2 28.7 21 488-508 178-198 (562)
102 COG4372 Uncharacterized protei 98.3 0.0057 1.2E-07 63.4 33.2 24 900-925 460-483 (499)
103 KOG0946|consensus 98.3 0.001 2.2E-08 75.4 29.5 37 798-834 905-941 (970)
104 PF14662 CCDC155: Coiled-coil 98.2 0.0067 1.4E-07 57.6 28.3 34 503-536 20-53 (193)
105 PF05667 DUF812: Protein of un 98.1 0.021 4.7E-07 66.0 36.4 16 246-261 127-142 (594)
106 PF05557 MAD: Mitotic checkpoi 98.0 2.1E-06 4.5E-11 103.7 2.7 34 839-872 503-536 (722)
107 KOG4593|consensus 98.0 0.051 1.1E-06 61.6 57.7 17 840-856 601-617 (716)
108 COG5185 HEC1 Protein involved 98.0 0.037 8E-07 59.1 40.7 29 513-541 296-324 (622)
109 PF05667 DUF812: Protein of un 98.0 0.011 2.5E-07 68.2 31.3 9 164-172 93-101 (594)
110 PF05557 MAD: Mitotic checkpoi 97.9 9.1E-06 2E-10 98.1 4.0 27 809-835 508-534 (722)
111 PF05622 HOOK: HOOK protein; 97.9 3.2E-06 6.9E-11 101.7 0.0 20 831-850 628-647 (713)
112 KOG0978|consensus 97.8 0.11 2.5E-06 60.0 55.1 12 899-910 653-664 (698)
113 COG3883 Uncharacterized protei 97.8 0.045 9.9E-07 55.5 28.8 51 690-740 152-202 (265)
114 KOG0980|consensus 97.8 0.1 2.3E-06 60.5 34.8 45 485-532 334-378 (980)
115 KOG0980|consensus 97.8 0.12 2.6E-06 60.1 34.6 24 498-521 358-381 (980)
116 PF14915 CCDC144C: CCDC144C pr 97.8 0.06 1.3E-06 54.8 42.7 14 806-819 280-293 (305)
117 TIGR03185 DNA_S_dndD DNA sulfu 97.7 0.12 2.5E-06 62.2 35.4 14 139-152 30-43 (650)
118 PF15619 Lebercilin: Ciliary p 97.7 0.036 7.9E-07 54.4 24.9 27 485-511 13-39 (194)
119 PF05622 HOOK: HOOK protein; 97.6 1.2E-05 2.7E-10 96.7 0.0 6 864-869 580-585 (713)
120 KOG0962|consensus 97.6 0.41 8.9E-06 59.0 57.0 62 795-856 1013-1079(1294)
121 KOG0978|consensus 97.6 0.3 6.4E-06 56.7 59.6 16 376-391 153-168 (698)
122 KOG0963|consensus 97.5 0.29 6.2E-06 55.1 49.1 8 778-785 348-355 (629)
123 COG5185 HEC1 Protein involved 97.5 0.24 5.2E-06 53.3 41.8 12 775-786 534-545 (622)
124 PF09787 Golgin_A5: Golgin sub 97.4 0.49 1.1E-05 54.9 36.6 63 809-871 367-431 (511)
125 PF13514 AAA_27: AAA domain 97.4 0.99 2.1E-05 58.0 47.9 9 136-144 114-122 (1111)
126 COG4477 EzrA Negative regulato 97.3 0.44 9.6E-06 52.6 52.0 23 799-821 449-471 (570)
127 TIGR02680 conserved hypothetic 97.2 1.1 2.4E-05 58.4 37.3 22 270-291 195-218 (1353)
128 KOG1853|consensus 97.2 0.25 5.3E-06 48.5 23.3 24 828-851 136-159 (333)
129 KOG0962|consensus 97.2 1.1 2.4E-05 55.5 53.5 13 774-786 1015-1027(1294)
130 PF07111 HCR: Alpha helical co 97.2 0.72 1.6E-05 52.8 58.7 46 485-530 163-208 (739)
131 PF14915 CCDC144C: CCDC144C pr 97.2 0.37 8E-06 49.3 42.3 13 801-813 282-294 (305)
132 PF08317 Spc7: Spc7 kinetochor 97.1 0.61 1.3E-05 50.6 31.4 20 486-505 77-96 (325)
133 PF08317 Spc7: Spc7 kinetochor 97.0 0.68 1.5E-05 50.2 30.1 16 485-500 83-98 (325)
134 TIGR00618 sbcc exonuclease Sbc 96.9 2.2 4.9E-05 54.5 66.8 15 138-152 27-41 (1042)
135 PF05010 TACC: Transforming ac 96.9 0.53 1.1E-05 46.6 31.2 32 736-767 162-193 (207)
136 PF09789 DUF2353: Uncharacteri 96.8 0.83 1.8E-05 48.2 29.8 16 561-576 14-29 (319)
137 PF09787 Golgin_A5: Golgin sub 96.8 1.5 3.2E-05 50.9 33.3 34 838-871 391-424 (511)
138 PF05911 DUF869: Plant protein 96.8 1.9 4E-05 51.7 36.3 10 860-869 300-309 (769)
139 COG5059 KIP1 Kinesin-like prot 96.7 0.00023 5E-09 82.5 -2.1 146 104-259 354-566 (568)
140 KOG1899|consensus 96.5 0.73 1.6E-05 51.5 23.2 28 842-869 277-304 (861)
141 PF10481 CENP-F_N: Cenp-F N-te 96.3 0.6 1.3E-05 46.8 19.1 12 810-821 161-172 (307)
142 TIGR00634 recN DNA repair prot 96.3 2.1 4.6E-05 50.5 27.7 13 141-153 26-38 (563)
143 PF07111 HCR: Alpha helical co 96.3 3.2 6.9E-05 47.8 61.8 11 842-852 559-569 (739)
144 PF10481 CENP-F_N: Cenp-F N-te 96.2 1.3 2.8E-05 44.5 20.7 13 822-834 289-301 (307)
145 TIGR02680 conserved hypothetic 96.1 7.8 0.00017 50.8 63.4 16 139-154 26-41 (1353)
146 TIGR01005 eps_transp_fam exopo 96.1 1 2.2E-05 55.5 24.5 12 247-258 83-94 (754)
147 TIGR03007 pepcterm_ChnLen poly 95.9 1.7 3.7E-05 50.6 24.5 16 531-546 166-181 (498)
148 TIGR03007 pepcterm_ChnLen poly 95.9 2.9 6.3E-05 48.7 26.4 22 723-744 357-378 (498)
149 KOG0979|consensus 95.9 5.9 0.00013 47.6 58.2 36 141-176 46-87 (1072)
150 TIGR00634 recN DNA repair prot 95.8 4.8 0.0001 47.5 27.6 12 568-579 187-198 (563)
151 PF13514 AAA_27: AAA domain 95.8 9.3 0.0002 49.3 53.0 7 106-112 88-94 (1111)
152 PF09755 DUF2046: Uncharacteri 95.6 3.4 7.4E-05 43.1 38.5 8 649-656 140-147 (310)
153 KOG2129|consensus 95.6 3.9 8.4E-05 43.6 30.3 20 902-921 361-380 (552)
154 TIGR01005 eps_transp_fam exopo 95.5 2 4.2E-05 53.0 23.6 31 516-546 191-221 (754)
155 COG4477 EzrA Negative regulato 95.5 5.6 0.00012 44.4 52.5 6 323-328 40-45 (570)
156 PF13851 GAS: Growth-arrest sp 95.3 3.4 7.4E-05 41.1 25.7 23 520-542 56-78 (201)
157 PF09755 DUF2046: Uncharacteri 95.3 4.4 9.5E-05 42.4 36.1 8 805-812 269-276 (310)
158 PF06818 Fez1: Fez1; InterPro 95.2 3.4 7.4E-05 40.4 22.7 16 486-501 12-27 (202)
159 PF10168 Nup88: Nuclear pore c 95.2 1.9 4.2E-05 51.6 21.1 9 148-156 249-257 (717)
160 PF08614 ATG16: Autophagy prot 95.1 0.44 9.6E-06 47.4 13.4 34 705-738 121-154 (194)
161 TIGR00618 sbcc exonuclease Sbc 94.9 17 0.00037 46.6 55.0 6 198-203 5-10 (1042)
162 KOG0982|consensus 94.8 7.3 0.00016 42.0 26.4 6 722-727 411-416 (502)
163 KOG4809|consensus 94.4 10 0.00023 42.2 41.2 38 162-201 122-159 (654)
164 PF04111 APG6: Autophagy prote 94.3 1.1 2.4E-05 48.1 14.9 69 691-759 55-123 (314)
165 KOG1850|consensus 94.3 7.6 0.00017 40.1 44.6 78 795-872 248-325 (391)
166 KOG4360|consensus 94.0 5.2 0.00011 44.1 18.7 22 565-586 161-182 (596)
167 PF04111 APG6: Autophagy prote 94.0 1.2 2.6E-05 47.9 14.2 33 728-760 99-131 (314)
168 KOG0804|consensus 93.8 4.6 0.0001 43.8 17.7 49 146-204 110-159 (493)
169 KOG0979|consensus 93.8 20 0.00044 43.3 56.2 6 215-220 42-47 (1072)
170 KOG0804|consensus 93.8 5.2 0.00011 43.5 18.0 8 165-172 88-95 (493)
171 PF11559 ADIP: Afadin- and alp 93.7 6.5 0.00014 37.3 19.1 11 776-786 135-145 (151)
172 PF00308 Bac_DnaA: Bacterial d 93.6 0.033 7.2E-07 56.7 1.7 69 104-175 4-82 (219)
173 PRK10869 recombination and rep 93.3 21 0.00046 41.9 29.6 11 142-152 27-37 (553)
174 KOG0992|consensus 93.1 17 0.00036 40.2 44.9 28 841-871 387-414 (613)
175 PF10498 IFT57: Intra-flagella 93.0 5.1 0.00011 43.7 17.1 12 306-317 68-79 (359)
176 KOG2129|consensus 92.9 16 0.00034 39.3 28.2 23 799-821 280-302 (552)
177 COG1419 FlhF Flagellar GTP-bin 92.8 0.09 1.9E-06 57.0 3.5 38 118-155 180-221 (407)
178 PRK12377 putative replication 92.8 0.078 1.7E-06 54.7 3.0 70 105-176 71-148 (248)
179 KOG4677|consensus 92.6 18 0.00039 39.4 33.0 45 826-870 425-469 (554)
180 COG2805 PilT Tfp pilus assembl 92.3 0.045 9.7E-07 56.2 0.4 31 125-155 113-143 (353)
181 PRK06893 DNA replication initi 92.1 0.096 2.1E-06 53.8 2.6 47 104-156 12-58 (229)
182 PF13166 AAA_13: AAA domain 92.0 37 0.0008 41.6 28.7 16 137-152 16-31 (712)
183 PF13166 AAA_13: AAA domain 91.9 38 0.00083 41.5 28.9 13 249-261 30-42 (712)
184 KOG1850|consensus 91.2 20 0.00044 37.1 43.8 17 770-786 246-262 (391)
185 PF12777 MT: Microtubule-bindi 91.2 26 0.00057 38.4 23.2 19 556-574 15-33 (344)
186 PRK06620 hypothetical protein; 91.1 0.12 2.6E-06 52.3 2.0 48 104-155 12-62 (214)
187 PRK06835 DNA replication prote 90.9 0.12 2.6E-06 55.9 1.8 49 125-174 172-228 (329)
188 COG2804 PulE Type II secretory 90.8 0.1 2.2E-06 58.0 1.2 32 125-156 246-277 (500)
189 smart00242 MYSc Myosin. Large 90.4 0.84 1.8E-05 54.8 8.5 69 134-202 89-166 (677)
190 PF06637 PV-1: PV-1 protein (P 90.4 28 0.0006 37.2 40.3 36 835-870 352-387 (442)
191 PF12777 MT: Microtubule-bindi 90.3 32 0.00069 37.8 24.2 37 534-579 9-45 (344)
192 PRK07952 DNA replication prote 90.2 0.31 6.8E-06 50.2 4.1 69 105-175 69-145 (244)
193 PRK08116 hypothetical protein; 90.2 0.19 4.2E-06 52.8 2.6 68 104-173 81-158 (268)
194 COG0556 UvrB Helicase subunit 89.9 0.22 4.7E-06 55.1 2.7 48 104-156 4-51 (663)
195 COG0593 DnaA ATPase involved i 89.7 0.25 5.4E-06 54.3 3.1 68 104-174 83-161 (408)
196 COG2433 Uncharacterized conser 89.7 23 0.0005 40.5 17.9 20 282-302 187-206 (652)
197 PRK10869 recombination and rep 89.6 50 0.0011 38.9 30.1 42 505-546 157-198 (553)
198 COG4717 Uncharacterized conser 89.4 55 0.0012 39.2 38.6 14 135-148 143-156 (984)
199 PF10212 TTKRSYEDQ: Predicted 89.3 44 0.00095 37.9 23.4 14 720-733 461-474 (518)
200 KOG0982|consensus 88.9 39 0.00084 36.7 32.0 10 528-537 224-233 (502)
201 PRK05642 DNA replication initi 88.8 0.28 6E-06 50.6 2.5 50 104-156 15-64 (234)
202 KOG2991|consensus 88.8 28 0.0006 34.9 25.4 7 540-546 108-114 (330)
203 PRK09087 hypothetical protein; 88.6 0.25 5.4E-06 50.5 2.0 46 104-155 17-62 (226)
204 PLN02939 transferase, transfer 88.5 74 0.0016 39.5 32.6 17 772-788 381-397 (977)
205 COG4026 Uncharacterized protei 87.7 3.7 8E-05 39.9 8.9 76 794-869 139-214 (290)
206 PLN02939 transferase, transfer 87.4 85 0.0018 39.0 32.2 54 485-538 129-182 (977)
207 COG2433 Uncharacterized conser 87.4 14 0.00031 42.0 14.5 6 135-140 128-133 (652)
208 PRK06526 transposase; Provisio 87.3 0.28 6E-06 51.1 1.5 62 105-173 73-142 (254)
209 PRK08084 DNA replication initi 87.3 0.41 8.8E-06 49.4 2.7 47 104-156 18-64 (235)
210 cd01378 MYSc_type_I Myosin mot 87.0 2.2 4.9E-05 51.0 9.0 70 134-203 83-161 (674)
211 KOG3859|consensus 87.0 39 0.00085 34.7 18.2 72 131-227 36-107 (406)
212 PRK08181 transposase; Validate 86.8 0.61 1.3E-05 48.8 3.6 37 139-175 108-152 (269)
213 PRK08939 primosomal protein Dn 86.7 0.41 8.8E-06 51.3 2.3 70 105-175 124-202 (306)
214 cd00124 MYSc Myosin motor doma 86.6 1.8 3.8E-05 52.2 7.9 76 127-202 75-158 (679)
215 PF15254 CCDC14: Coiled-coil d 86.3 78 0.0017 37.5 27.0 11 8-19 4-14 (861)
216 COG1484 DnaC DNA replication p 86.2 0.64 1.4E-05 48.4 3.4 70 104-176 75-152 (254)
217 KOG4677|consensus 86.1 57 0.0012 35.7 29.9 9 923-931 524-532 (554)
218 cd01381 MYSc_type_VII Myosin m 85.9 2.6 5.6E-05 50.4 8.7 70 134-203 83-158 (671)
219 PF08826 DMPK_coil: DMPK coile 85.8 9 0.0002 29.6 8.5 50 803-852 10-59 (61)
220 PRK14087 dnaA chromosomal repl 85.7 0.61 1.3E-05 53.1 3.2 69 104-175 111-189 (450)
221 PRK14086 dnaA chromosomal repl 85.4 0.74 1.6E-05 53.5 3.7 50 104-156 284-333 (617)
222 cd01379 MYSc_type_III Myosin m 85.2 2.6 5.7E-05 50.1 8.2 70 134-203 83-159 (653)
223 KOG4460|consensus 85.2 71 0.0015 36.0 18.7 9 310-318 445-453 (741)
224 cd01384 MYSc_type_XI Myosin mo 84.8 2.1 4.5E-05 51.2 7.1 70 134-203 85-164 (674)
225 KOG2991|consensus 84.7 46 0.001 33.4 25.6 19 524-542 106-124 (330)
226 PF15450 DUF4631: Domain of un 84.7 76 0.0016 35.8 47.9 46 486-531 22-67 (531)
227 PRK08727 hypothetical protein; 84.6 0.44 9.6E-06 49.1 1.3 46 104-156 15-60 (233)
228 cd01377 MYSc_type_II Myosin mo 84.5 3.7 8.1E-05 49.4 9.1 70 134-203 88-173 (693)
229 PF04912 Dynamitin: Dynamitin 84.3 76 0.0016 35.5 25.5 20 485-504 95-114 (388)
230 cd01380 MYSc_type_V Myosin mot 84.1 3.4 7.4E-05 49.6 8.6 70 134-203 83-164 (691)
231 TIGR02928 orc1/cdc6 family rep 83.9 0.65 1.4E-05 51.7 2.4 26 128-153 30-56 (365)
232 KOG0243|consensus 83.9 1.2E+02 0.0026 37.6 52.2 18 306-323 237-254 (1041)
233 COG0497 RecN ATPase involved i 83.8 92 0.002 36.1 27.9 8 144-151 29-36 (557)
234 PRK00149 dnaA chromosomal repl 83.7 0.68 1.5E-05 53.0 2.5 50 104-156 118-167 (450)
235 PRK08903 DnaA regulatory inact 83.3 0.84 1.8E-05 46.9 2.7 47 104-155 14-60 (227)
236 smart00053 DYNc Dynamin, GTPas 83.2 0.8 1.7E-05 47.0 2.4 51 163-227 87-137 (240)
237 PF09738 DUF2051: Double stran 83.2 36 0.00077 36.2 14.6 28 795-822 217-244 (302)
238 KOG1514|consensus 82.9 0.77 1.7E-05 52.9 2.4 54 125-178 408-484 (767)
239 PRK14088 dnaA chromosomal repl 82.8 0.82 1.8E-05 51.9 2.6 49 104-156 101-149 (440)
240 cd01385 MYSc_type_IX Myosin mo 82.7 3.1 6.8E-05 49.9 7.5 69 134-202 91-168 (692)
241 PRK00411 cdc6 cell division co 82.2 0.87 1.9E-05 51.3 2.6 20 134-153 52-71 (394)
242 cd01382 MYSc_type_VI Myosin mo 81.2 5.2 0.00011 48.3 8.7 70 134-203 88-163 (717)
243 TIGR03420 DnaA_homol_Hda DnaA 81.2 0.86 1.9E-05 46.7 1.9 46 104-155 11-56 (226)
244 cd01387 MYSc_type_XV Myosin mo 81.1 3.5 7.5E-05 49.4 7.1 68 134-201 84-158 (677)
245 PRK09841 cryptic autophosphory 80.8 70 0.0015 39.2 18.3 17 244-260 93-109 (726)
246 PF13245 AAA_19: Part of AAA d 80.2 0.45 9.8E-06 39.0 -0.5 19 137-155 10-28 (76)
247 TIGR00362 DnaA chromosomal rep 80.2 1.2 2.6E-05 50.3 2.8 51 103-156 105-155 (405)
248 COG3096 MukB Uncharacterized p 80.1 1.3E+02 0.0028 35.3 44.0 14 143-156 33-46 (1480)
249 COG5008 PilU Tfp pilus assembl 80.0 0.77 1.7E-05 46.4 1.0 32 125-156 115-146 (375)
250 cd01383 MYSc_type_VIII Myosin 79.8 6.7 0.00015 47.0 8.9 69 134-202 89-162 (677)
251 PF10212 TTKRSYEDQ: Predicted 79.6 1.2E+02 0.0026 34.6 23.2 19 488-506 306-324 (518)
252 PF05673 DUF815: Protein of un 79.5 0.88 1.9E-05 46.2 1.2 47 105-156 24-71 (249)
253 PF13479 AAA_24: AAA domain 79.4 0.81 1.8E-05 46.4 1.0 38 137-174 3-61 (213)
254 PF10234 Cluap1: Clusterin-ass 79.2 84 0.0018 32.7 19.1 20 756-775 225-244 (267)
255 PF09738 DUF2051: Double stran 79.1 94 0.002 33.1 22.0 53 569-621 83-135 (302)
256 KOG2751|consensus 79.0 1.1E+02 0.0023 33.8 16.4 7 745-751 249-255 (447)
257 PF08581 Tup_N: Tup N-terminal 79.0 35 0.00075 28.1 12.1 28 756-783 46-73 (79)
258 PF03148 Tektin: Tektin family 78.8 1.1E+02 0.0025 34.0 43.3 20 581-600 68-87 (384)
259 KOG4302|consensus 78.8 1.5E+02 0.0032 35.2 35.6 23 519-541 61-83 (660)
260 cd01850 CDC_Septin CDC/Septin. 78.6 2.3 5E-05 45.0 4.1 20 134-153 1-20 (276)
261 KOG4807|consensus 78.6 99 0.0021 33.1 31.7 8 270-277 63-70 (593)
262 COG1382 GimC Prefoldin, chaper 78.5 49 0.0011 29.5 13.7 18 742-759 84-101 (119)
263 PRK10436 hypothetical protein; 78.4 0.58 1.3E-05 53.0 -0.5 28 128-155 209-236 (462)
264 cd00009 AAA The AAA+ (ATPases 78.2 0.97 2.1E-05 42.2 1.1 26 128-153 10-35 (151)
265 COG1474 CDC6 Cdc6-related prot 77.9 1.2 2.7E-05 48.9 1.9 20 134-153 39-58 (366)
266 PRK11519 tyrosine kinase; Prov 77.4 1.3E+02 0.0029 36.8 19.3 17 244-260 93-109 (719)
267 PF01695 IstB_IS21: IstB-like 77.4 1 2.2E-05 44.1 1.0 38 137-174 47-92 (178)
268 PF10267 Tmemb_cc2: Predicted 77.3 1.1E+02 0.0024 33.8 16.4 17 486-502 64-80 (395)
269 PRK02119 hypothetical protein; 76.9 23 0.00051 28.6 8.4 44 828-871 12-55 (73)
270 PRK09841 cryptic autophosphory 76.6 90 0.0019 38.3 17.5 24 115-140 88-111 (726)
271 PF04851 ResIII: Type III rest 76.5 0.73 1.6E-05 45.2 -0.3 32 125-156 12-44 (184)
272 PTZ00112 origin recognition co 75.7 1.7 3.7E-05 52.0 2.3 21 134-154 778-798 (1164)
273 PRK04406 hypothetical protein; 75.4 30 0.00066 28.2 8.7 43 828-870 14-56 (75)
274 cd01386 MYSc_type_XVIII Myosin 75.2 14 0.00031 44.9 9.9 69 134-203 83-160 (767)
275 TIGR02538 type_IV_pilB type IV 74.4 0.79 1.7E-05 53.8 -0.8 29 128-156 307-335 (564)
276 PLN03188 kinesin-12 family pro 74.3 2.6E+02 0.0055 35.7 41.0 20 7-26 197-216 (1320)
277 PRK11519 tyrosine kinase; Prov 74.0 1.4E+02 0.0031 36.5 18.3 22 116-139 89-110 (719)
278 TIGR02533 type_II_gspE general 73.7 1.1 2.3E-05 51.5 0.1 29 128-156 233-261 (486)
279 PF07058 Myosin_HC-like: Myosi 73.7 1.2E+02 0.0026 31.6 17.6 11 861-871 151-161 (351)
280 KOG0989|consensus 73.6 1.6 3.4E-05 45.4 1.2 31 124-154 43-74 (346)
281 PTZ00014 myosin-A; Provisional 73.3 8.4 0.00018 47.1 7.4 70 134-203 180-257 (821)
282 KOG2685|consensus 73.2 1.5E+02 0.0033 32.5 32.1 235 501-744 73-395 (421)
283 PF05278 PEARLI-4: Arabidopsis 72.8 1.2E+02 0.0027 31.4 16.7 9 565-573 168-176 (269)
284 PF05377 FlaC_arch: Flagella a 72.7 23 0.00051 26.6 6.7 23 745-767 17-39 (55)
285 PRK12422 chromosomal replicati 72.6 2.6 5.6E-05 47.9 2.8 51 103-156 106-160 (445)
286 PF07106 TBPIP: Tat binding pr 72.5 62 0.0014 31.3 12.0 62 485-546 73-136 (169)
287 PRK06921 hypothetical protein; 71.9 2.7 5.9E-05 44.1 2.6 32 125-156 102-136 (266)
288 COG3206 GumC Uncharacterized p 71.9 1.9E+02 0.0041 33.2 25.7 209 543-764 184-402 (458)
289 PRK12726 flagellar biosynthesi 71.7 3 6.4E-05 45.6 2.8 20 137-156 206-225 (407)
290 PRK00846 hypothetical protein; 71.7 50 0.0011 27.0 9.0 45 809-853 11-55 (77)
291 cd01131 PilT Pilus retraction 71.7 0.94 2E-05 45.3 -0.9 19 137-155 1-19 (198)
292 TIGR01420 pilT_fam pilus retra 71.7 1.2 2.6E-05 48.9 -0.2 29 128-156 113-141 (343)
293 PF09439 SRPRB: Signal recogni 71.4 1.3 2.7E-05 43.2 -0.1 60 138-229 4-63 (181)
294 PRK10698 phage shock protein P 71.3 1.2E+02 0.0027 30.7 25.4 11 809-819 206-216 (222)
295 TIGR02524 dot_icm_DotB Dot/Icm 70.5 1.3 2.9E-05 48.5 -0.1 24 133-156 130-153 (358)
296 PF00735 Septin: Septin; Inte 70.0 0.79 1.7E-05 48.5 -2.0 19 135-153 2-20 (281)
297 PF13401 AAA_22: AAA domain; P 70.0 0.78 1.7E-05 42.2 -1.8 16 137-152 4-19 (131)
298 cd01129 PulE-GspE PulE/GspE Th 68.9 1.5 3.3E-05 45.9 -0.1 27 129-155 72-98 (264)
299 TIGR02525 plasmid_TraJ plasmid 68.9 1.6 3.4E-05 48.1 -0.1 21 136-156 148-168 (372)
300 PF01935 DUF87: Domain of unkn 68.7 1.3 2.8E-05 45.6 -0.8 15 140-154 26-40 (229)
301 PRK02793 phi X174 lysis protei 68.6 45 0.00098 26.9 8.3 44 828-871 11-54 (72)
302 PF13604 AAA_30: AAA domain; P 68.4 1.3 2.9E-05 44.1 -0.7 28 129-156 10-37 (196)
303 PF10267 Tmemb_cc2: Predicted 68.2 2E+02 0.0043 31.9 16.1 20 242-261 65-84 (395)
304 COG2256 MGS1 ATPase related to 68.1 1.8 3.9E-05 46.8 0.2 72 126-206 37-118 (436)
305 PHA00729 NTP-binding motif con 68.0 2.8 6E-05 42.4 1.5 31 125-155 5-35 (226)
306 PRK09183 transposase/IS protei 67.6 2.9 6.2E-05 43.8 1.6 18 139-156 104-121 (259)
307 PLN00020 ribulose bisphosphate 67.6 4 8.6E-05 44.2 2.6 50 104-153 111-164 (413)
308 KOG4438|consensus 67.5 2E+02 0.0043 31.7 42.8 18 305-322 72-89 (446)
309 PF01926 MMR_HSR1: 50S ribosom 67.3 7.1 0.00015 34.9 4.0 14 140-153 2-15 (116)
310 PRK04406 hypothetical protein; 67.1 62 0.0013 26.4 8.8 50 808-857 8-57 (75)
311 KOG0727|consensus 66.9 5.8 0.00012 39.8 3.4 71 105-175 152-233 (408)
312 PRK00295 hypothetical protein; 66.9 51 0.0011 26.3 8.1 46 827-872 7-52 (68)
313 PRK04325 hypothetical protein; 66.8 51 0.0011 26.8 8.3 41 810-850 8-48 (74)
314 PF15035 Rootletin: Ciliary ro 66.6 1.3E+02 0.0029 29.4 20.7 30 753-782 145-174 (182)
315 smart00382 AAA ATPases associa 66.2 1.4 3.1E-05 40.7 -0.9 18 138-155 3-20 (148)
316 PF05496 RuvB_N: Holliday junc 65.7 4.8 0.00011 40.4 2.6 41 111-152 23-65 (233)
317 cd00046 DEXDc DEAD-like helica 65.4 1.6 3.4E-05 40.3 -0.8 17 140-156 3-19 (144)
318 PF00063 Myosin_head: Myosin h 65.3 9.3 0.0002 46.5 5.6 69 134-202 82-161 (689)
319 KOG4460|consensus 65.2 2.5E+02 0.0054 31.9 19.9 37 103-151 102-138 (741)
320 KOG4807|consensus 65.0 2E+02 0.0044 30.9 31.1 20 488-507 295-314 (593)
321 PRK00295 hypothetical protein; 64.8 56 0.0012 26.0 8.0 50 809-858 3-52 (68)
322 PF06309 Torsin: Torsin; Inte 64.7 3.2 6.9E-05 37.5 1.1 40 108-152 25-68 (127)
323 PRK02793 phi X174 lysis protei 64.6 62 0.0013 26.2 8.3 50 809-858 6-55 (72)
324 TIGR03015 pepcterm_ATPase puta 64.5 2.4 5.1E-05 44.8 0.3 21 133-153 39-59 (269)
325 KOG2655|consensus 64.0 12 0.00026 40.5 5.4 76 132-228 16-92 (366)
326 PF13207 AAA_17: AAA domain; P 63.9 2 4.4E-05 38.8 -0.3 14 139-152 1-14 (121)
327 PF00448 SRP54: SRP54-type pro 63.6 1.4 3E-05 44.0 -1.6 18 139-156 3-20 (196)
328 PF05970 PIF1: PIF1-like helic 63.6 3.9 8.5E-05 45.3 1.8 36 115-154 4-39 (364)
329 PRK03992 proteasome-activating 63.5 3 6.5E-05 46.6 0.9 51 104-154 127-182 (389)
330 PF13191 AAA_16: AAA ATPase do 63.5 3.2 7E-05 40.7 1.0 29 125-153 12-40 (185)
331 KOG2264|consensus 63.4 62 0.0013 36.5 10.5 70 681-750 81-150 (907)
332 PRK00846 hypothetical protein; 63.3 72 0.0016 26.1 8.3 55 807-861 9-63 (77)
333 PF15294 Leu_zip: Leucine zipp 63.2 2E+02 0.0043 30.1 27.7 241 593-834 3-276 (278)
334 PF04102 SlyX: SlyX; InterPro 63.1 48 0.001 26.5 7.4 52 808-859 1-52 (69)
335 PF02562 PhoH: PhoH-like prote 63.0 3.4 7.3E-05 41.2 1.0 25 126-152 10-34 (205)
336 PF10805 DUF2730: Protein of u 62.9 91 0.002 27.4 9.8 66 699-764 34-101 (106)
337 PF08844 DUF1815: Domain of un 62.7 26 0.00057 29.2 5.8 54 118-171 5-82 (105)
338 PRK13894 conjugal transfer ATP 62.6 2.5 5.4E-05 45.6 0.0 29 125-154 137-165 (319)
339 PF10205 KLRAQ: Predicted coil 62.5 1E+02 0.0023 26.6 11.2 89 800-888 1-89 (102)
340 PF04102 SlyX: SlyX; InterPro 62.5 53 0.0012 26.3 7.6 52 697-748 1-52 (69)
341 KOG0735|consensus 62.5 4.3 9.4E-05 47.1 1.8 69 127-198 691-766 (952)
342 PF05335 DUF745: Protein of un 62.3 1.6E+02 0.0035 28.9 18.3 114 490-612 59-172 (188)
343 PRK06547 hypothetical protein; 62.3 4.3 9.4E-05 39.4 1.6 29 124-152 2-30 (172)
344 PRK00736 hypothetical protein; 62.2 60 0.0013 25.9 7.7 52 808-859 2-53 (68)
345 PF00270 DEAD: DEAD/DEAH box h 62.0 3.2 7E-05 40.0 0.7 25 126-152 5-29 (169)
346 PF10805 DUF2730: Protein of u 62.0 96 0.0021 27.3 9.8 66 706-771 34-101 (106)
347 PF01637 Arch_ATPase: Archaeal 61.9 2.1 4.6E-05 43.8 -0.6 33 122-154 5-37 (234)
348 PF00437 T2SE: Type II/IV secr 61.9 1.5 3.2E-05 46.5 -1.9 34 121-154 108-144 (270)
349 KOG1103|consensus 61.7 2.2E+02 0.0047 30.1 23.7 194 528-733 88-292 (561)
350 PF03999 MAP65_ASE1: Microtubu 61.5 1.1E+02 0.0024 36.6 13.6 415 480-926 29-511 (619)
351 PF09744 Jnk-SapK_ap_N: JNK_SA 61.4 1.5E+02 0.0033 28.2 17.2 131 653-783 24-158 (158)
352 PF05335 DUF745: Protein of un 61.2 1.7E+02 0.0037 28.7 18.9 117 594-714 56-172 (188)
353 COG1842 PspA Phage shock prote 60.9 2E+02 0.0042 29.3 25.7 194 535-744 12-220 (225)
354 COG5283 Phage-related tail pro 60.7 4.5E+02 0.0097 33.4 35.2 277 482-767 27-314 (1213)
355 PF12846 AAA_10: AAA-like doma 60.4 2.1 4.6E-05 45.9 -1.0 18 137-154 1-18 (304)
356 PRK10536 hypothetical protein; 60.4 4.3 9.3E-05 41.8 1.2 39 104-152 51-89 (262)
357 PF12761 End3: Actin cytoskele 60.2 86 0.0019 30.7 9.8 97 485-590 97-194 (195)
358 PRK04325 hypothetical protein; 60.1 83 0.0018 25.6 8.3 51 717-767 5-55 (74)
359 cd01852 AIG1 AIG1 (avrRpt2-ind 60.1 13 0.00029 36.9 4.8 57 139-224 2-58 (196)
360 KOG0090|consensus 59.8 2.9 6.4E-05 41.0 -0.0 53 139-229 40-96 (238)
361 PRK12402 replication factor C 59.8 4.1 8.9E-05 44.7 1.1 33 122-154 21-53 (337)
362 PF08581 Tup_N: Tup N-terminal 59.7 99 0.0021 25.5 11.8 75 581-655 1-75 (79)
363 PF05276 SH3BP5: SH3 domain-bi 59.6 2.1E+02 0.0046 29.3 30.9 219 508-739 3-223 (239)
364 PF08826 DMPK_coil: DMPK coile 59.6 82 0.0018 24.5 10.1 61 683-743 1-61 (61)
365 TIGR01242 26Sp45 26S proteasom 59.4 2.4 5.2E-05 47.0 -0.8 48 105-152 119-171 (364)
366 KOG3091|consensus 59.3 3.1E+02 0.0066 31.0 18.9 166 536-714 337-505 (508)
367 CHL00081 chlI Mg-protoporyphyr 59.3 3.3 7.1E-05 45.1 0.2 42 105-154 14-55 (350)
368 TIGR03319 YmdA_YtgF conserved 59.1 3.4E+02 0.0075 31.6 22.5 148 638-785 34-185 (514)
369 TIGR01010 BexC_CtrB_KpsE polys 59.0 2.8E+02 0.0062 30.6 18.8 158 496-659 149-307 (362)
370 TIGR03752 conj_TIGR03752 integ 58.7 1.3E+02 0.0028 33.9 12.1 81 646-726 61-142 (472)
371 PF00004 AAA: ATPase family as 58.6 2.9 6.3E-05 38.3 -0.3 13 140-152 1-13 (132)
372 PF13671 AAA_33: AAA domain; P 58.5 2.9 6.2E-05 39.1 -0.3 14 139-152 1-14 (143)
373 TIGR02782 TrbB_P P-type conjug 58.4 2.9 6.4E-05 44.7 -0.3 33 121-154 117-149 (299)
374 PRK12723 flagellar biosynthesi 58.3 5.4 0.00012 44.2 1.7 39 116-154 146-191 (388)
375 PF02994 Transposase_22: L1 tr 58.2 34 0.00075 37.8 7.9 105 647-751 80-188 (370)
376 PF01920 Prefoldin_2: Prefoldi 58.0 1.3E+02 0.0027 26.2 11.9 85 647-731 1-100 (106)
377 PF02403 Seryl_tRNA_N: Seryl-t 57.9 1.3E+02 0.0029 26.4 11.5 94 646-740 4-100 (108)
378 PHA03011 hypothetical protein; 57.9 63 0.0014 27.3 7.2 63 796-858 56-118 (120)
379 PTZ00454 26S protease regulato 57.8 4.8 0.0001 45.0 1.2 48 105-152 142-194 (398)
380 TIGR00293 prefoldin, archaeal 57.8 1.3E+02 0.0028 27.3 10.5 92 737-837 1-126 (126)
381 PF11180 DUF2968: Protein of u 57.7 1.9E+02 0.0042 28.2 15.2 96 658-753 91-186 (192)
382 smart00283 MA Methyl-accepting 57.7 2.3E+02 0.005 29.1 37.0 238 509-755 1-262 (262)
383 cd01130 VirB11-like_ATPase Typ 57.7 3.5 7.7E-05 40.7 0.1 29 125-154 14-42 (186)
384 TIGR00635 ruvB Holliday juncti 57.6 5.7 0.00012 42.8 1.7 41 111-152 3-45 (305)
385 PF05278 PEARLI-4: Arabidopsis 57.5 2.4E+02 0.0052 29.3 17.7 127 621-747 128-261 (269)
386 PF11570 E2R135: Coiled-coil r 57.1 1.5E+02 0.0032 26.7 14.1 128 607-738 3-136 (136)
387 PF13086 AAA_11: AAA domain; P 56.9 2.6 5.7E-05 43.2 -1.0 25 129-154 10-34 (236)
388 PF03215 Rad17: Rad17 cell cyc 56.8 3.9 8.5E-05 47.2 0.3 30 125-154 31-62 (519)
389 PF08172 CASP_C: CASP C termin 56.7 2.3E+02 0.005 29.3 13.0 90 500-598 1-135 (248)
390 COG1730 GIM5 Predicted prefold 56.7 1.7E+02 0.0037 27.3 13.9 102 734-843 5-140 (145)
391 TIGR03752 conj_TIGR03752 integ 56.7 1.5E+02 0.0032 33.4 12.1 81 514-603 61-142 (472)
392 COG1219 ClpX ATP-dependent pro 56.5 4 8.6E-05 42.7 0.3 15 138-152 98-112 (408)
393 PF04548 AIG1: AIG1 family; I 56.4 11 0.00025 38.0 3.6 57 139-224 2-58 (212)
394 PF03999 MAP65_ASE1: Microtubu 56.4 10 0.00023 45.2 3.8 298 558-875 21-368 (619)
395 cd01853 Toc34_like Toc34-like 56.3 13 0.00028 38.6 4.1 59 136-224 30-88 (249)
396 PF08172 CASP_C: CASP C termin 56.1 1.8E+02 0.004 30.0 12.2 90 653-742 1-135 (248)
397 COG4096 HsdR Type I site-speci 56.0 14 0.0003 44.0 4.5 63 123-186 172-286 (875)
398 PF15035 Rootletin: Ciliary ro 56.0 2.1E+02 0.0045 28.1 19.5 169 511-691 1-178 (182)
399 PRK00736 hypothetical protein; 55.9 99 0.0021 24.7 8.0 64 823-886 3-66 (68)
400 KOG1882|consensus 55.7 16 0.00035 36.3 4.2 39 187-225 211-249 (293)
401 PF13863 DUF4200: Domain of un 55.6 1.6E+02 0.0035 26.6 17.1 107 607-713 2-108 (126)
402 PF13863 DUF4200: Domain of un 55.6 1.6E+02 0.0035 26.6 16.7 108 599-706 1-108 (126)
403 smart00763 AAA_PrkA PrkA AAA d 55.5 10 0.00022 41.3 3.1 42 107-152 49-93 (361)
404 PF13949 ALIX_LYPXL_bnd: ALIX 55.5 2.8E+02 0.0061 29.5 31.7 239 493-746 24-294 (296)
405 COG1730 GIM5 Predicted prefold 55.3 1.8E+02 0.0039 27.2 15.4 100 643-742 5-143 (145)
406 COG0497 RecN ATPase involved i 55.3 4E+02 0.0086 31.1 30.9 234 515-783 139-387 (557)
407 PRK13833 conjugal transfer pro 54.9 3.5 7.5E-05 44.4 -0.5 33 121-154 129-161 (323)
408 KOG0743|consensus 54.8 17 0.00036 40.3 4.6 66 118-197 215-292 (457)
409 COG1223 Predicted ATPase (AAA+ 54.7 3.5 7.5E-05 41.8 -0.5 15 139-153 153-167 (368)
410 PF06810 Phage_GP20: Phage min 54.3 1.4E+02 0.003 28.4 10.1 74 682-755 2-82 (155)
411 PF02403 Seryl_tRNA_N: Seryl-t 54.1 1.5E+02 0.0033 26.0 11.5 94 653-747 4-100 (108)
412 PRK13900 type IV secretion sys 53.8 4.9 0.00011 43.6 0.5 32 122-154 146-177 (332)
413 KOG0739|consensus 53.8 7.9 0.00017 40.1 1.8 33 140-172 169-207 (439)
414 PF11180 DUF2968: Protein of u 53.8 2.2E+02 0.0048 27.8 16.0 99 647-745 87-185 (192)
415 COG3206 GumC Uncharacterized p 53.6 4E+02 0.0086 30.6 26.5 224 470-702 174-403 (458)
416 PF00910 RNA_helicase: RNA hel 53.6 4.2 9.1E-05 35.9 -0.1 13 140-152 1-13 (107)
417 smart00175 RAB Rab subfamily o 53.4 11 0.00023 35.9 2.8 59 140-227 3-61 (164)
418 TIGR00631 uvrb excinuclease AB 52.8 10 0.00022 45.4 2.9 64 105-173 2-72 (655)
419 PF04728 LPP: Lipoprotein leuc 52.6 1E+02 0.0022 23.5 8.4 49 706-754 2-50 (56)
420 TIGR02894 DNA_bind_RsfA transc 52.4 1.8E+02 0.0038 27.6 10.1 86 768-853 55-153 (161)
421 PHA02244 ATPase-like protein 52.2 9.6 0.00021 41.6 2.3 45 106-152 90-134 (383)
422 PF06120 Phage_HK97_TLTM: Tail 52.2 3.2E+02 0.007 29.1 21.9 162 563-726 41-202 (301)
423 TIGR03499 FlhF flagellar biosy 51.8 4.3 9.2E-05 43.1 -0.4 22 133-154 190-211 (282)
424 KOG0972|consensus 51.5 3E+02 0.0065 28.6 16.6 150 510-676 218-367 (384)
425 PF03915 AIP3: Actin interacti 51.5 4E+02 0.0087 30.0 19.5 167 577-749 151-320 (424)
426 cd00890 Prefoldin Prefoldin is 51.4 1.9E+02 0.0041 26.2 11.8 93 737-837 1-127 (129)
427 PF10205 KLRAQ: Predicted coil 51.4 1.6E+02 0.0035 25.5 11.3 69 691-759 3-71 (102)
428 PRK14722 flhF flagellar biosyn 51.2 4.3 9.3E-05 44.6 -0.5 20 135-154 135-154 (374)
429 KOG2373|consensus 51.2 11 0.00025 39.7 2.5 28 127-154 261-290 (514)
430 cd01855 YqeH YqeH. YqeH is an 51.0 22 0.00048 35.1 4.6 93 105-224 97-189 (190)
431 PF06810 Phage_GP20: Phage min 51.0 2E+02 0.0043 27.4 10.6 76 675-750 2-84 (155)
432 PF13555 AAA_29: P-loop contai 51.0 3.2 6.9E-05 32.3 -1.1 16 139-154 25-40 (62)
433 PF07058 Myosin_HC-like: Myosi 50.4 3.2E+02 0.007 28.6 17.0 132 709-841 2-159 (351)
434 PRK00409 recombination and DNA 50.4 5.8E+02 0.013 31.6 17.4 112 628-739 504-625 (782)
435 KOG0086|consensus 50.3 68 0.0015 29.7 6.9 125 140-322 12-143 (214)
436 PF02183 HALZ: Homeobox associ 50.2 69 0.0015 23.1 5.6 42 807-848 1-42 (45)
437 PF07851 TMPIT: TMPIT-like pro 50.1 2.4E+02 0.0051 30.5 12.1 83 676-758 1-91 (330)
438 COG4962 CpaF Flp pilus assembl 50.0 5 0.00011 42.8 -0.2 29 125-154 162-190 (355)
439 TIGR01243 CDC48 AAA family ATP 49.8 18 0.0004 44.3 4.6 79 73-152 144-227 (733)
440 KOG0972|consensus 49.8 3.2E+02 0.0069 28.4 16.8 144 596-739 218-367 (384)
441 PF05377 FlaC_arch: Flagella a 49.6 77 0.0017 24.0 5.9 40 701-740 1-40 (55)
442 COG1222 RPT1 ATP-dependent 26S 49.5 10 0.00022 40.6 2.0 93 59-151 98-199 (406)
443 PF11570 E2R135: Coiled-coil r 49.4 2E+02 0.0043 25.9 14.5 121 628-752 3-136 (136)
444 PRK13851 type IV secretion sys 49.4 4.2 9.1E-05 44.3 -0.9 19 136-154 161-179 (344)
445 KOG1533|consensus 49.3 5.8 0.00012 39.6 0.1 37 139-175 4-69 (290)
446 PTZ00361 26 proteosome regulat 49.1 12 0.00026 42.3 2.5 93 60-152 131-232 (438)
447 PF07851 TMPIT: TMPIT-like pro 49.1 2.6E+02 0.0057 30.1 12.2 83 669-751 1-91 (330)
448 PRK00454 engB GTP-binding prot 49.0 26 0.00055 34.6 4.8 74 117-224 6-79 (196)
449 PF13238 AAA_18: AAA domain; P 48.9 4.9 0.00011 36.5 -0.5 13 140-152 1-13 (129)
450 PRK12704 phosphodiesterase; Pr 48.9 5E+02 0.011 30.3 24.0 157 629-785 31-191 (520)
451 PF11172 DUF2959: Protein of u 48.8 2.8E+02 0.006 27.4 19.9 153 702-854 27-192 (201)
452 TIGR02903 spore_lon_C ATP-depe 48.7 8.2 0.00018 46.0 1.3 39 106-152 152-190 (615)
453 TIGR02971 heterocyst_DevB ABC 48.7 3.8E+02 0.0083 29.0 20.0 142 611-759 54-203 (327)
454 PF15294 Leu_zip: Leucine zipp 48.5 3.4E+02 0.0075 28.4 28.9 241 586-827 3-276 (278)
455 PTZ00464 SNF-7-like protein; P 48.4 3E+02 0.0065 27.7 18.5 143 705-855 16-173 (211)
456 PHA02544 44 clamp loader, smal 48.3 8.4 0.00018 41.8 1.2 49 104-152 8-58 (316)
457 PF04728 LPP: Lipoprotein leuc 48.2 1.2E+02 0.0026 23.1 8.6 55 720-774 2-56 (56)
458 KOG2543|consensus 48.1 4.5 9.8E-05 43.5 -0.9 15 140-154 33-47 (438)
459 PF03148 Tektin: Tektin family 48.1 4.3E+02 0.0094 29.4 46.6 295 401-744 11-368 (384)
460 cd01368 KISc_KIF23_like Kinesi 48.0 6.5 0.00014 43.2 0.3 24 3-26 106-129 (345)
461 cd01876 YihA_EngB The YihA (En 47.7 11 0.00023 36.0 1.7 53 140-224 2-54 (170)
462 PHA01747 putative ATP-dependen 47.7 7.1 0.00015 42.0 0.4 27 127-153 180-206 (425)
463 TIGR00293 prefoldin, archaeal 47.7 2.2E+02 0.0047 25.8 11.0 95 507-601 1-124 (126)
464 PF07724 AAA_2: AAA domain (Cd 47.6 5.8 0.00013 38.5 -0.2 15 138-152 4-18 (171)
465 cd04161 Arl2l1_Arl13_like Arl2 47.6 17 0.00037 34.9 3.2 55 139-227 1-55 (167)
466 TIGR01241 FtsH_fam ATP-depende 47.4 7.8 0.00017 45.0 0.8 48 105-152 52-103 (495)
467 TIGR03819 heli_sec_ATPase heli 47.1 19 0.0004 39.4 3.6 71 78-154 120-195 (340)
468 PRK15178 Vi polysaccharide exp 47.1 4.7E+02 0.01 29.5 18.6 159 500-660 225-385 (434)
469 cd00890 Prefoldin Prefoldin is 47.1 2.2E+02 0.0048 25.7 12.5 88 646-733 1-127 (129)
470 PRK15048 methyl-accepting chem 46.9 5.5E+02 0.012 30.3 40.0 291 613-908 246-548 (553)
471 PRK11331 5-methylcytosine-spec 46.9 9.6 0.00021 42.8 1.3 31 120-152 179-209 (459)
472 PF02050 FliJ: Flagellar FliJ 46.8 2E+02 0.0044 25.3 16.8 107 647-753 1-112 (123)
473 KOG3850|consensus 46.7 4.2E+02 0.009 28.8 15.7 109 744-852 262-373 (455)
474 KOG1655|consensus 46.7 2.9E+02 0.0062 27.0 16.2 151 697-855 16-174 (218)
475 KOG2685|consensus 46.6 4.4E+02 0.0096 29.1 33.4 275 566-841 73-395 (421)
476 cd04140 ARHI_like ARHI subfami 46.6 33 0.00071 32.8 5.0 58 140-227 4-61 (165)
477 PRK00080 ruvB Holliday junctio 46.6 12 0.00025 40.9 2.0 41 111-152 24-66 (328)
478 PLN03025 replication factor C 46.4 11 0.00023 41.1 1.6 32 122-153 19-50 (319)
479 PF15456 Uds1: Up-regulated Du 46.3 2.3E+02 0.005 25.7 12.1 79 672-751 22-111 (124)
480 PHA02624 large T antigen; Prov 46.3 12 0.00026 43.3 2.1 32 121-152 413-446 (647)
481 PF01920 Prefoldin_2: Prefoldi 46.3 2E+02 0.0043 24.9 13.2 78 661-738 1-100 (106)
482 PF12761 End3: Actin cytoskele 46.3 1.4E+02 0.003 29.4 8.8 97 645-741 97-194 (195)
483 KOG0736|consensus 46.2 17 0.00036 43.0 3.1 65 138-215 706-787 (953)
484 COG1125 OpuBA ABC-type proline 46.2 5.1 0.00011 40.7 -0.8 15 140-154 30-44 (309)
485 KOG2010|consensus 46.2 2.2E+02 0.0048 29.9 10.6 97 720-843 110-207 (405)
486 PF02456 Adeno_IVa2: Adenoviru 45.9 7.2 0.00016 40.7 0.2 15 138-152 88-102 (369)
487 COG5271 MDN1 AAA ATPase contai 45.8 18 0.00039 46.6 3.4 74 83-172 1812-1893(4600)
488 PRK13729 conjugal transfer pil 45.8 59 0.0013 36.6 7.1 54 796-849 68-121 (475)
489 TIGR02688 conserved hypothetic 45.7 15 0.00033 40.8 2.6 85 111-197 185-309 (449)
490 KOG2228|consensus 45.7 17 0.00036 38.7 2.7 41 110-154 26-66 (408)
491 COG3352 FlaC Putative archaeal 45.5 2.6E+02 0.0056 26.1 10.6 97 484-589 44-141 (157)
492 PRK13729 conjugal transfer pil 45.4 1E+02 0.0023 34.7 8.9 66 473-538 58-123 (475)
493 cd01860 Rab5_related Rab5-rela 45.3 23 0.00049 33.6 3.6 62 137-227 1-62 (163)
494 TIGR01010 BexC_CtrB_KpsE polys 45.2 4.6E+02 0.01 28.9 19.4 151 568-729 149-307 (362)
495 PRK13764 ATPase; Provisional 45.2 6.2 0.00013 46.2 -0.5 28 127-154 247-274 (602)
496 PF00015 MCPsignal: Methyl-acc 44.9 3.2E+02 0.007 27.1 24.9 196 556-755 16-211 (213)
497 smart00502 BBC B-Box C-termina 44.8 2.3E+02 0.0049 25.3 13.8 98 724-821 3-103 (127)
498 cd04110 Rab35 Rab35 subfamily. 44.8 14 0.00031 36.8 2.2 59 140-227 9-67 (199)
499 PF15456 Uds1: Up-regulated Du 44.7 2.4E+02 0.0053 25.6 12.1 79 686-765 22-111 (124)
500 cd04105 SR_beta Signal recogni 44.7 27 0.00059 34.9 4.2 59 139-227 2-60 (203)
No 1
>KOG0243|consensus
Probab=100.00 E-value=1.9e-65 Score=580.27 Aligned_cols=259 Identities=29% Similarity=0.477 Sum_probs=236.7
Q ss_pred ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~ 138 (932)
+||||++..|.......+|.+.+ +.-|++...- . ...-.+.|+||.||||.+.|.+||+.+|.|+|..|+.||||
T Consensus 55 vRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~--~--sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNC 130 (1041)
T KOG0243|consen 55 VRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI--A--SKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNC 130 (1041)
T ss_pred EEeCCCCchhhhcCCCeEEecCCCcceEEEeccc--c--cccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCc
Confidence 39999999997766667777777 4446665431 0 11124589999999999999999999999999999999999
Q ss_pred eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994 139 LLFSFGTTNSGKTFTIQD-------------------------------------------------------------- 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-------------------------------------------------------------- 156 (932)
|||||||||+||||||.|
T Consensus 131 TIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~ 210 (1041)
T KOG0243|consen 131 TIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKL 210 (1041)
T ss_pred eEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccccccc
Confidence 999999999999999999
Q ss_pred -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEe--CCCCCcceeEE
Q psy16994 157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV--DPGSEELIMMS 215 (932)
Q Consensus 157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~--~~~~~~~~~~s 215 (932)
+.+++|+++.|++.+|..|...|++++|.+|..|||||+||+|+|+.. .++|......|
T Consensus 211 ~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~G 290 (1041)
T KOG0243|consen 211 RIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIG 290 (1041)
T ss_pred ccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhc
Confidence 889999999999999999999999999999999999999999999887 44556778999
Q ss_pred EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994 216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295 (932)
Q Consensus 216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~ 295 (932)
+|+||||||||...++|+.+.|.+|+|.||+||.+||+||.||+++. .|||||+|||||||+|+|||.. +||
T Consensus 291 KLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-------~HIPYRESKLTRLLQDSLGGkT-KT~ 362 (1041)
T KOG0243|consen 291 KLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-------GHIPYRESKLTRLLQDSLGGKT-KTC 362 (1041)
T ss_pred ccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-------CCCCchHHHHHHHHHHHhCCCc-eeE
Confidence 99999999999999999999999999999999999999999999965 9999999999999999999999 999
Q ss_pred EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
||+||||+..+++||++||.||.||+.|+|+|..|
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccc
Confidence 99999999999999999999999999999999865
No 2
>KOG4280|consensus
Probab=100.00 E-value=2.5e-64 Score=548.58 Aligned_cols=265 Identities=31% Similarity=0.475 Sum_probs=239.5
Q ss_pred ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~ 138 (932)
+|+||++..+.......++.+.. ...+.+.+|... ....++.|+||.||+++++|.+||..++.|+|++|+.|||+
T Consensus 11 vr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNg 87 (574)
T KOG4280|consen 11 VRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAG---IEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNG 87 (574)
T ss_pred EeecCCCchhhhhhhccccccccccceeeecCCccc---ccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCc
Confidence 48999999886666666666544 455667666521 12334569999999999999999999999999999999999
Q ss_pred eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994 139 LLFSFGTTNSGKTFTIQD-------------------------------------------------------------- 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-------------------------------------------------------------- 156 (932)
||||||||||||||||.|
T Consensus 88 tvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~ 167 (574)
T KOG4280|consen 88 TVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPK 167 (574)
T ss_pred eEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCC
Confidence 999999999999999999
Q ss_pred -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC--CCCCcceeEEEEEEEeCCCCcc
Q psy16994 157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD--PGSEELIMMSSFDICDLAGAER 227 (932)
Q Consensus 157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~--~~~~~~~~~s~l~~vDLagse~ 227 (932)
|+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|++.. .++....+.|+|+|||||||||
T Consensus 168 ~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr 247 (574)
T KOG4280|consen 168 CGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSER 247 (574)
T ss_pred CceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhh
Confidence 8999999999999999999999999999999999999999999999942 3346778999999999999999
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcH
Q psy16994 228 QKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA 307 (932)
Q Consensus 228 ~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~ 307 (932)
..++++.|.|++||++||+||++||+||.+|+++. +.|||||||+||+||+|+||||+ +|+||+||+|...+|
T Consensus 248 ~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~------~~HIPYRdSkLT~LLqdSLGGN~-kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 248 QSKTGAEGERLKEATNINLSLSALGNVISALVDGS------KTHIPYRDSKLTRLLQDSLGGNS-KTTMIANVSPSSDNY 320 (574)
T ss_pred hcccCccchhhhhhcccchhHHHHHHHHHHHhccc------cCCCCcchhHHHHHHHHHcCCCc-eEEEEEecCchhhhh
Confidence 99999999999999999999999999999999975 35999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCC
Q psy16994 308 EETVQVLKISSVARDLLTVAKPRHLPP 334 (932)
Q Consensus 308 ~et~~~l~~~~~~~~i~~~~~~~~~~~ 334 (932)
+||++||+||+||+.|.+.|++|-.|.
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcc
Confidence 999999999999999999999875553
No 3
>KOG0247|consensus
Probab=100.00 E-value=1.2e-61 Score=522.25 Aligned_cols=264 Identities=38% Similarity=0.632 Sum_probs=242.0
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCC-CccccC---CCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMK-DMKCSI---TDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNG 135 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g 135 (932)
+|+||+.+ .....+|+++.+..+|.+..|. ....+. +.....|+|.+||+|.++|.+||+.++.|+|.+++.|
T Consensus 37 ~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkg 113 (809)
T KOG0247|consen 37 CRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKG 113 (809)
T ss_pred EeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcc
Confidence 49999886 2345689999999999988665 333331 1223479999999999999999999999999999999
Q ss_pred CCceeeecccccCCCcEEEec-----------------------------------------------------------
Q psy16994 136 EDALLFSFGTTNSGKTFTIQD----------------------------------------------------------- 156 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------------- 156 (932)
.|+.+|+||.|||||||||+|
T Consensus 114 qn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~ 193 (809)
T KOG0247|consen 114 QNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRK 193 (809)
T ss_pred cceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhcccccc
Confidence 999999999999999999999
Q ss_pred ------------------------------------------------------------------------------ce
Q psy16994 157 ------------------------------------------------------------------------------LT 158 (932)
Q Consensus 157 ------------------------------------------------------------------------------l~ 158 (932)
++
T Consensus 194 ~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~ 273 (809)
T KOG0247|consen 194 STSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLT 273 (809)
T ss_pred CcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeecccc
Confidence 99
Q ss_pred EEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcceeEEEEEEEeCCCCccccccccchhh
Q psy16994 159 YVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEELIMMSSFDICDLAGAERQKRAHTSGDR 237 (932)
Q Consensus 159 ~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~~~~s~l~~vDLagse~~~~~~~~~~~ 237 (932)
+|.|.|.+||+.+|..|.++|++++|.+|..|||||+||+|.|.+.... +...+.+|.|.|||||||||..++++.|.|
T Consensus 274 ~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~R 353 (809)
T KOG0247|consen 274 EVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGER 353 (809)
T ss_pred EEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHH
Confidence 9999999999999999999999999999999999999999999998655 456789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHH
Q psy16994 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKIS 317 (932)
Q Consensus 238 ~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~ 317 (932)
|+||++||.||++||+||.+|+.++.++ ...+|||||||||++|+.||.|.+ +++|||||+|.+.+|+|++++|+||
T Consensus 354 LrEagNINtSLmTLg~Cie~LR~nqk~k--s~~~VPyRdSKLThlfq~~f~G~g-ki~MIV~vnp~~e~YdEnl~vlkFa 430 (809)
T KOG0247|consen 354 LREAGNINTSLMTLRRCIDVLRENQKSK--SQKIVPYRDSKLTHLFKNYFDGKG-KIRMIVCVNPKAEDYDENLNVLKFA 430 (809)
T ss_pred HHhhccccHHHHHHHHHHHHHHHHhhhh--ccccCcchHHHHHHHHHHhcCCCC-cEEEEEecCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999665 569999999999999999999999 9999999999999999999999999
Q ss_pred HHhcccccccCC
Q psy16994 318 SVARDLLTVAKP 329 (932)
Q Consensus 318 ~~~~~i~~~~~~ 329 (932)
+.|..|.+.++.
T Consensus 431 eiaq~v~v~~~~ 442 (809)
T KOG0247|consen 431 EIAQEVEVARPV 442 (809)
T ss_pred HhcccccccCcc
Confidence 999999887655
No 4
>KOG0245|consensus
Probab=100.00 E-value=4.9e-63 Score=547.45 Aligned_cols=267 Identities=27% Similarity=0.453 Sum_probs=237.1
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC-------CChHHHHHHHHHHHHHHh
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH-------TTQAELFQNIVHNMLERY 132 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~q~~v~~~~~~~~v~~~ 132 (932)
+|||||+..|.......++.+.+..+-.++|+.+ .....|+||+.|+.. ++|..||..++.++|+++
T Consensus 10 VRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~------k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 10 VRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS------KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred EEeccchhhhhhcccceEEEecCCceeeecCCCc------ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 4899999999666444444444544444444322 122359999999765 689999999999999999
Q ss_pred cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------------- 156 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------------- 156 (932)
+.|||+||||||||||||||||+|
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg 163 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKG 163 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999999
Q ss_pred ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEE
Q psy16994 157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSF 217 (932)
Q Consensus 157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l 217 (932)
|+.+.|+|+.|+..+|..|++.|++++|.||..|||||+||+|.+.+.... +.....+|++
T Consensus 164 ~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKI 243 (1221)
T KOG0245|consen 164 GLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKI 243 (1221)
T ss_pred CceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeee
Confidence 899999999999999999999999999999999999999999999998332 2457789999
Q ss_pred EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994 218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297 (932)
Q Consensus 218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i 297 (932)
+|||||||||+..+|+.|.||+||.+||+||.+||.||.||++.+.++..+..+||||||.|||||++.||||+ +|+||
T Consensus 244 sLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS-KTaMI 322 (1221)
T KOG0245|consen 244 SLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS-KTAMI 322 (1221)
T ss_pred eEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc-hhhhh
Confidence 99999999999999999999999999999999999999999998865556778999999999999999999999 99999
Q ss_pred EecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP 333 (932)
Q Consensus 298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~ 333 (932)
+++||.+-+|+|||+|||||.+||.|+|.+++|-.|
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdp 358 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDP 358 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCc
Confidence 999999999999999999999999999999988554
No 5
>KOG0240|consensus
Probab=100.00 E-value=1.2e-60 Score=502.10 Aligned_cols=260 Identities=28% Similarity=0.421 Sum_probs=230.6
Q ss_pred cccccccccccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML 129 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v 129 (932)
.+.|+| |+||++..+...+...+..+.+ ..+|.+... .....|.||.||.|+++|.+||..++.|+|
T Consensus 8 ~IkV~c----R~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~--------~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 8 SIKVVC----RFRPLNGLENNLGSKFIDCFENGENTVVLETT--------KETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred ceEEEE----EeecCCchhhhcCCcCccCCCCCcceEEEecc--------cccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 455666 9999999884333222222223 445554321 122589999999999999999999999999
Q ss_pred HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------- 156 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------- 156 (932)
++|+.|||+||||||||||||||||.|
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k 155 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK 155 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc
Confidence 999999999999999999999999999
Q ss_pred -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
++.+.|.++++++.+++.|..+|.++.|.+|.+|||||+||+|+|.+.+... .....|+|+|
T Consensus 156 ~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~-~~~~~gkLyL 234 (607)
T KOG0240|consen 156 TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED-KRKLSGKLYL 234 (607)
T ss_pred CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc-hhhccccEEE
Confidence 8899999999999999999999999999999999999999999999987663 4567899999
Q ss_pred EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994 220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN 299 (932)
Q Consensus 220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~ 299 (932)
|||||||++.++|+.|.-+.|+.+||+||++||+||.+|+.+ +..||||||||||++|+|+||||+ +|.+|+|
T Consensus 235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g------~~shipYRDSKLTRILqdSLGGNs-RTtlIi~ 307 (607)
T KOG0240|consen 235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG------PKSHIPYRDSKLTRILQDSLGGNS-RTTLIIC 307 (607)
T ss_pred EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC------CCCCCcchhhHHHHHHHHHhCCCc-ceEEEEe
Confidence 999999999999999999999999999999999999999987 369999999999999999999999 9999999
Q ss_pred cCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 300 VNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
++|+.-+..||.+||+|+.+|+.|++.+..|
T Consensus 308 csPss~n~~ET~STl~fg~rak~ikN~v~~n 338 (607)
T KOG0240|consen 308 CSPSSLNEAETKSTLRFGNRAKTIKNTVWVN 338 (607)
T ss_pred cCCccccccccccchhhccccccccchhhhh
Confidence 9999999999999999999999999877643
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.4e-56 Score=507.90 Aligned_cols=255 Identities=30% Similarity=0.453 Sum_probs=227.3
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
+||||+...+. + ..++...++.++.+. +..|.||+||++.++|.+||+.++.|+|+.+++|||+|
T Consensus 104 VRVRPl~~~E~--g-~~iV~~~s~dsl~I~------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT 168 (1320)
T PLN03188 104 VRMKPLNKGEE--G-EMIVQKMSNDSLTIN------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS 168 (1320)
T ss_pred EEcCCCCCccC--C-CeeEEEcCCCeEEEe------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence 49999988752 1 234444455566552 34799999999999999999999999999999999999
Q ss_pred eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994 140 LFSFGTTNSGKTFTIQD--------------------------------------------------------------- 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G--------------------------------------------------------------- 156 (932)
|||||||||||||||+|
T Consensus 169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp 248 (1320)
T PLN03188 169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP 248 (1320)
T ss_pred eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence 99999999999999987
Q ss_pred -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCC---CCCcceeE
Q psy16994 157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP---GSEELIMM 214 (932)
Q Consensus 157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~---~~~~~~~~ 214 (932)
|+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+... .+......
T Consensus 249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~ 328 (1320)
T PLN03188 249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT 328 (1320)
T ss_pred ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE
Confidence 67788999999999999999999999999999999999999999987632 23345678
Q ss_pred EEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCee
Q psy16994 215 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTV 294 (932)
Q Consensus 215 s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~ 294 (932)
|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+..+... +..|||||+||||+||+++|||++ +|
T Consensus 329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~g--k~~HIPYRDSKLTrLLQDSLGGNS-KT 405 (1320)
T PLN03188 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTG--KQRHIPYRDSRLTFLLQESLGGNA-KL 405 (1320)
T ss_pred EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccC--CCCcCCCCcchHHHHHHHhcCCCc-eE
Confidence 999999999999999999999999999999999999999999999754222 458999999999999999999999 99
Q ss_pred EEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCC
Q psy16994 295 KMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHL 332 (932)
Q Consensus 295 ~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~ 332 (932)
+|||||+|...++.+|++||+||++|+.|++.|+.|..
T Consensus 406 vMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~ 443 (1320)
T PLN03188 406 AMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEV 443 (1320)
T ss_pred EEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccc
Confidence 99999999999999999999999999999999987754
No 7
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.5e-58 Score=498.63 Aligned_cols=265 Identities=40% Similarity=0.636 Sum_probs=238.3
Q ss_pred cccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCcccc-----CCCCCcceecceecCCCCChHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCS-----ITDTCNLYRFSNIYGPHTTQAELFQNIV 125 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~f~fd~v~~~~~~q~~v~~~~~ 125 (932)
++.|+. ||||+.+.|......+|+.+.++.+|.+++|...... .......|.||+||+++++|.+||+.++
T Consensus 2 ~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~ 77 (345)
T cd01368 2 PVKVYL----RVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTA 77 (345)
T ss_pred CEEEEE----EeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHH
Confidence 445554 9999999987777888999999999999998732211 1234558999999999999999999999
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------- 156 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------- 156 (932)
.|+|+++++|+|+||||||+|||||||||+|
T Consensus 78 ~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~ 157 (345)
T cd01368 78 LPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKK 157 (345)
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccC
Confidence 9999999999999999999999999999998
Q ss_pred ------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC-------Ccc
Q psy16994 157 ------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS-------EEL 211 (932)
Q Consensus 157 ------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~-------~~~ 211 (932)
++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..... ...
T Consensus 158 ~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~ 237 (345)
T cd01368 158 RQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQ 237 (345)
T ss_pred CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCc
Confidence 7889999999999999999999999999999999999999999999875432 245
Q ss_pred eeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCC
Q psy16994 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLS 291 (932)
Q Consensus 212 ~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~ 291 (932)
...|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.++... .+..|||||+||||+||+++|+|++
T Consensus 238 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~-~~~~~iPyR~SkLT~lL~~~l~g~s 316 (345)
T cd01368 238 ITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG-STNKMVPYRDSKLTHLFQNYFDGEG 316 (345)
T ss_pred eEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc-CCCCcCCCcCCHHHHHHHHhcCCCC
Confidence 678999999999999999999999999999999999999999999999865321 1469999999999999999999999
Q ss_pred CeeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994 292 STVKMIVNVNASPAYAEETVQVLKISSVAR 321 (932)
Q Consensus 292 ~~~~~i~~~~p~~~~~~et~~~l~~~~~~~ 321 (932)
+|+||+||+|+..+++||++||+||++|+
T Consensus 317 -~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 317 -KARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred -eEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999985
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.2e-58 Score=498.29 Aligned_cols=259 Identities=32% Similarity=0.518 Sum_probs=236.0
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCcc-----ccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMK-----CSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~ 134 (932)
+||||+.+.|...+...|+.+.++.++.+.|+.... .........|.||+||++.++|.+||+.++.|+|+++++
T Consensus 6 vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~ 85 (338)
T cd01370 6 VRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLN 85 (338)
T ss_pred EEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHHHHHHC
Confidence 399999999877778899999998888887765211 112234568999999999999999999999999999999
Q ss_pred CCCceeeecccccCCCcEEEec----------------------------------------------------------
Q psy16994 135 GEDALLFSFGTTNSGKTFTIQD---------------------------------------------------------- 156 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------------- 156 (932)
|+|+||||||+|||||||||+|
T Consensus 86 G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed 165 (338)
T cd01370 86 GYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELRED 165 (338)
T ss_pred CCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEc
Confidence 9999999999999999999998
Q ss_pred ---------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC--CcceeEEEEEEEeCCCC
Q psy16994 157 ---------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EELIMMSSFDICDLAGA 225 (932)
Q Consensus 157 ---------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~--~~~~~~s~l~~vDLags 225 (932)
++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+... ......|+|+|||||||
T Consensus 166 ~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGs 245 (338)
T cd01370 166 PNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGS 245 (338)
T ss_pred CCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCC
Confidence 8899999999999999999999999999999999999999999999986542 45578899999999999
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcC
Q psy16994 226 ERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA 305 (932)
Q Consensus 226 e~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~ 305 (932)
||...+++.|.+++|+.+||+||++|++||.+|+.++. ...|||||+||||+||+|+|||++ +|+||+||+|...
T Consensus 246 Er~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~----~~~~ipyR~SkLT~lL~d~Lggn~-~t~~I~~vsp~~~ 320 (338)
T cd01370 246 ERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK----KNKHIPYRDSKLTRLLKDSLGGNC-KTVMIANISPSSS 320 (338)
T ss_pred ccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC----CCCcCCCcCCHHHHHHHHhcCCCC-eEEEEEEeCCchh
Confidence 99999999999999999999999999999999998752 348999999999999999999999 9999999999999
Q ss_pred cHHHHHHHHHHHHHhccc
Q psy16994 306 YAEETVQVLKISSVARDL 323 (932)
Q Consensus 306 ~~~et~~~l~~~~~~~~i 323 (932)
+++||++||+||++|+.|
T Consensus 321 ~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 321 HYEETHNTLKYANRAKNI 338 (338)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999976
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.9e-58 Score=494.79 Aligned_cols=250 Identities=32% Similarity=0.479 Sum_probs=226.9
Q ss_pred cccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994 61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALL 140 (932)
Q Consensus 61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i 140 (932)
||||+...|.......|+...++.++.+.+. ....|.||+||++.++|.+||+.++.|+|+++++|+|+||
T Consensus 8 RvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~---------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti 78 (337)
T cd01373 8 RIRPPNEIEADGGQGQCLKKLSSDTLVWHSH---------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI 78 (337)
T ss_pred EcCcCChhhcccCCCeEEEEcCCCcEEeeCC---------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence 9999999887666777887766666665432 1358999999999999999999999999999999999999
Q ss_pred eecccccCCCcEEEec----------------------------------------------------------------
Q psy16994 141 FSFGTTNSGKTFTIQD---------------------------------------------------------------- 156 (932)
Q Consensus 141 ~~~G~tgsGKt~t~~G---------------------------------------------------------------- 156 (932)
||||+|||||||||+|
T Consensus 79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~ 158 (337)
T cd01373 79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158 (337)
T ss_pred EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence 9999999999999987
Q ss_pred ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC-CcceeEEEEEEE
Q psy16994 157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS-EELIMMSSFDIC 220 (932)
Q Consensus 157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~-~~~~~~s~l~~v 220 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..... ......|+|+||
T Consensus 159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 238 (337)
T cd01373 159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV 238 (337)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence 8889999999999999999999999999999999999999999998875432 234678999999
Q ss_pred eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994 221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300 (932)
Q Consensus 221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~ 300 (932)
|||||||...+++.|.+++|+.+||+||++|++||.+|+..+.. +..|||||+||||+||+++|||++ +|+||+||
T Consensus 239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~---~~~~ipyR~SkLT~lL~dsLggns-~t~~I~~v 314 (337)
T cd01373 239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG---KQRHVPYRDSKLTFLLRDSLGGNA-KTTIIANV 314 (337)
T ss_pred ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC---CCCccCCcccHHHHHHHHhcCCCc-eEEEEEEE
Confidence 99999999999999999999999999999999999999875421 368999999999999999999999 99999999
Q ss_pred CCCcCcHHHHHHHHHHHHHhccc
Q psy16994 301 NASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 301 ~p~~~~~~et~~~l~~~~~~~~i 323 (932)
+|...+++||++||+||.+|+.|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999976
No 10
>KOG0241|consensus
Probab=100.00 E-value=2.4e-57 Score=492.38 Aligned_cols=273 Identities=27% Similarity=0.425 Sum_probs=240.2
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC-------CChHHHHHHHHHHHHHHh
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH-------TTQAELFQNIVHNMLERY 132 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~q~~v~~~~~~~~v~~~ 132 (932)
+|||||+..|.+-...+++.+...++|...||.......+..+++|.||++|++. ++|..||..++..+|+++
T Consensus 10 VRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~na 89 (1714)
T KOG0241|consen 10 VRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENA 89 (1714)
T ss_pred EEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHHH
Confidence 3899999999877666666665555544433332222223456799999999875 589999999999999999
Q ss_pred cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------------- 156 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------------- 156 (932)
++|||+||||||||||||||||.|
T Consensus 90 f~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtl 169 (1714)
T KOG0241|consen 90 FQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTL 169 (1714)
T ss_pred hhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCccee
Confidence 999999999999999999999999
Q ss_pred --------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEe--CCC-CCcceeEEEEEE
Q psy16994 157 --------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKV--DPG-SEELIMMSSFDI 219 (932)
Q Consensus 157 --------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~--~~~-~~~~~~~s~l~~ 219 (932)
|+.+.|+|++++-.+|..|.+.|++++|.+|..|||||+||.|.|.+. +.. +.....+|+|.|
T Consensus 170 kVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklsl 249 (1714)
T KOG0241|consen 170 KVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSL 249 (1714)
T ss_pred EEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeE
Confidence 888999999999999999999999999999999999999999999988 332 344568899999
Q ss_pred EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994 220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN 299 (932)
Q Consensus 220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~ 299 (932)
||||||||+.++++.|.|++|+++||+||.+||.||.+|+....+. ++.++||||||-||+||+|+||||| +|+||+|
T Consensus 250 VDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~k-gkdKfvPYrDSVLTwLLkD~LGGNs-rTvMiat 327 (1714)
T KOG0241|consen 250 VDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGK-GKDKFVPYRDSVLTWLLKDNLGGNS-RTVMIAT 327 (1714)
T ss_pred EEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCC-CccccccchhHHHHHHHHhhcCCCc-eeEEEEE
Confidence 9999999999999999999999999999999999999999865332 4678999999999999999999999 9999999
Q ss_pred cCCCcCcHHHHHHHHHHHHHhcccccccCCCCCCC
Q psy16994 300 VNASPAYAEETVQVLKISSVARDLLTVAKPRHLPP 334 (932)
Q Consensus 300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~~ 334 (932)
|||+.++|++|++|||||.+|++|+|..++|..|.
T Consensus 328 vSPaAdnyeeTlStLRYadrAkrIvN~avvNedpn 362 (1714)
T KOG0241|consen 328 VSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 362 (1714)
T ss_pred ecccccchHHHHHHHHHHHHHHHhhccccccCCch
Confidence 99999999999999999999999999999886554
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.3e-56 Score=486.38 Aligned_cols=268 Identities=29% Similarity=0.463 Sum_probs=239.2
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC-------CChHHHHHHHHHHHHHHh
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH-------TTQAELFQNIVHNMLERY 132 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~-------~~q~~v~~~~~~~~v~~~ 132 (932)
+|+||+...|...+...++.+.+ .++.+.+|.... ........|.||+||++. ++|.+||+.++.|+|+++
T Consensus 7 vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~-~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~ 84 (356)
T cd01365 7 VRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAAD-ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHA 84 (356)
T ss_pred EEeCcCChhhhccCCceEEEECC-CEEEEEcCCccc-ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 39999999987666667777666 788887765211 112345589999999999 999999999999999999
Q ss_pred cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------------- 156 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------------- 156 (932)
++|+|+||||||+|||||||||+|
T Consensus 85 l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~ 164 (356)
T cd01365 85 FEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGN 164 (356)
T ss_pred hCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcC
Confidence 999999999999999999999998
Q ss_pred ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEEE
Q psy16994 157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSFD 218 (932)
Q Consensus 157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l~ 218 (932)
++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... .......|+|+
T Consensus 165 l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~ 244 (356)
T cd01365 165 LKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKIS 244 (356)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEE
Confidence 788999999999999999999999999999999999999999999987543 24567889999
Q ss_pred EEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994 219 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK-ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297 (932)
Q Consensus 219 ~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~-~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i 297 (932)
|||||||||...++..|.+++|+..||+||++|++||.+|+.++... ..+..|||||+||||+||+++|||++ +++||
T Consensus 245 ~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s-~t~~I 323 (356)
T cd01365 245 LVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS-KTAMI 323 (356)
T ss_pred eeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc-eEEEE
Confidence 99999999999999999999999999999999999999999865321 12569999999999999999999999 99999
Q ss_pred EecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
+||+|...+++||++||+||+++++|++.|+.+
T Consensus 324 ~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 324 ATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999998753
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=6e-56 Score=476.68 Aligned_cols=249 Identities=26% Similarity=0.397 Sum_probs=226.7
Q ss_pred cccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
||||+.+.+...+...++.+.++.++.+++|.. ...........|.||+||++.++|.+||+.++.|+|+.+++|+|+|
T Consensus 8 RvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~ 87 (322)
T cd01367 8 RKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVAT 87 (322)
T ss_pred EcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 999999998766667778887777899988762 2222222356899999999999999999999999999999999999
Q ss_pred eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994 140 LFSFGTTNSGKTFTIQD--------------------------------------------------------------- 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G--------------------------------------------------------------- 156 (932)
|||||+|||||||||+|
T Consensus 88 i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~~~~~~v~ 167 (322)
T cd01367 88 CFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIV 167 (322)
T ss_pred EEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEcCCCCEEeC
Confidence 99999999999999997
Q ss_pred -ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccc-cc
Q psy16994 157 -LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAH-TS 234 (932)
Q Consensus 157 -l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~-~~ 234 (932)
++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+... ....|+|+||||||||+...++ ..
T Consensus 168 ~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~s~l~~vDLAGsE~~~~~~~~~ 243 (322)
T cd01367 168 GLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----NKLLGKLSFIDLAGSERGADTSEHD 243 (322)
T ss_pred CCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC----CeeEEEEEEeecCCccccccccccc
Confidence 88999999999999999999999999999999999999999999998764 4578999999999999988765 46
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHH
Q psy16994 235 GDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVL 314 (932)
Q Consensus 235 ~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l 314 (932)
+.++.|+.+||+||++|++||.+|+.++ .|||||+|+||+||+++|+|++ +|+||+||+|...+++||++||
T Consensus 244 ~~~~~e~~~IN~SL~~L~~vi~al~~~~-------~~iPyRdSkLT~lL~~~L~g~~-~t~~I~~vsp~~~~~~eTl~tL 315 (322)
T cd01367 244 RQTRKEGAEINKSLLALKECIRALASNK-------AHVPFRGSKLTQVLRDSFIGNS-KTVMIATISPSASSCEHTLNTL 315 (322)
T ss_pred hhhHHhHhHHhHHHHHHHHHHHHHhcCC-------CcCCCccCHHHHHHHHhhCCCC-eEEEEEEeCCchhhHHHHHHHH
Confidence 8999999999999999999999999854 8999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhc
Q psy16994 315 KISSVAR 321 (932)
Q Consensus 315 ~~~~~~~ 321 (932)
+||++++
T Consensus 316 ~fa~r~k 322 (322)
T cd01367 316 RYADRVK 322 (322)
T ss_pred HHHHhhC
Confidence 9999985
No 13
>KOG0242|consensus
Probab=100.00 E-value=5.4e-57 Score=515.12 Aligned_cols=262 Identities=30% Similarity=0.460 Sum_probs=229.0
Q ss_pred cccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994 59 KQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138 (932)
Q Consensus 59 ~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~ 138 (932)
.+||||+.+.+...+....+.+.++..+......+... ......|.||+||++.++|.+||+..+.|+|.+++.|+|+
T Consensus 11 ~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~ 88 (675)
T KOG0242|consen 11 SVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPE--KSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNA 88 (675)
T ss_pred EEEeCCCCccccccCCccceEecCCceeEeeccccccc--cccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCccc
Confidence 34899999885333333334444444433322111000 0114579999999999999999999999999999999999
Q ss_pred eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994 139 LLFSFGTTNSGKTFTIQD-------------------------------------------------------------- 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-------------------------------------------------------------- 156 (932)
+|||||+|||||||||.|
T Consensus 89 TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi 168 (675)
T KOG0242|consen 89 TVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGI 168 (675)
T ss_pred ceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCE
Confidence 999999999999999999
Q ss_pred ----ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccc
Q psy16994 157 ----LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAH 232 (932)
Q Consensus 157 ----l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~ 232 (932)
|++++|.|++++..+|..|..+|+++.|.+|..|||||+||+|.|.+...... . ..|+|+|||||||||+..++
T Consensus 169 ~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~lIDLAGSERas~T~ 246 (675)
T KOG0242|consen 169 VVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S-RVSKLNLIDLAGSERASRTG 246 (675)
T ss_pred EecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c-hhheehhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999876544 2 77899999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHH
Q psy16994 233 TSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 312 (932)
Q Consensus 233 ~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~ 312 (932)
+.|.|++||++||+||++||+||.+|+.+. ...|||||||||||||+++|||++ +|+|||||+|...+|++|.+
T Consensus 247 ~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~-----~~~hipYRDSKLTRiLq~sLgGn~-rt~~I~tisp~~~~~~eT~n 320 (675)
T KOG0242|consen 247 NEGVRLKEGAHINRSLLALGTVINKLSEGK-----RPRHIPYRDSKLTRLLQDSLGGNA-RTAIIATISPSSSHYEETKN 320 (675)
T ss_pred ccceeccccchhhHHHHHHHHHHHHHcccc-----ccCCCCccccHHHHhchhhcCCCc-cEEEEEEeCchhhHHHHHHH
Confidence 999999999999999999999999999874 346999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhcccccccCCC
Q psy16994 313 VLKISSVARDLLTVAKPR 330 (932)
Q Consensus 313 ~l~~~~~~~~i~~~~~~~ 330 (932)
||+||++|++|.+.+..|
T Consensus 321 TL~fAsrak~i~~~~~~n 338 (675)
T KOG0242|consen 321 TLKFASRAKEITTKAQVN 338 (675)
T ss_pred HHHHHHHhhhcccccccc
Confidence 999999999999998765
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5e-55 Score=477.56 Aligned_cols=260 Identities=30% Similarity=0.486 Sum_probs=235.5
Q ss_pred ccccCCCcccccCCCCceEEEeCC-CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQ-KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~ 138 (932)
+|+||+.+.|...+...++.+.++ .+|.+.++.. .......|.||+||++.++|.+||+.++.|+|+++++|+|+
T Consensus 8 vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ 83 (352)
T cd01364 8 VRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNC 83 (352)
T ss_pred EEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeE
Confidence 399999999876667778888765 6677765431 12344589999999999999999999999999999999999
Q ss_pred eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994 139 LLFSFGTTNSGKTFTIQD-------------------------------------------------------------- 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-------------------------------------------------------------- 156 (932)
||||||+|||||||||+|
T Consensus 84 ~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~ 163 (352)
T cd01364 84 TIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESDLN 163 (352)
T ss_pred EEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccccC
Confidence 999999999999999977
Q ss_pred -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--CCcceeEE
Q psy16994 157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEELIMMS 215 (932)
Q Consensus 157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~~~~~~~s 215 (932)
++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... +......|
T Consensus 164 ~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s 243 (352)
T cd01364 164 KPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIG 243 (352)
T ss_pred ccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEE
Confidence 667899999999999999999999999999999999999999999987543 34556789
Q ss_pred EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994 216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295 (932)
Q Consensus 216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~ 295 (932)
+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|..++ .|||||+|+||+||+++|||++ +|+
T Consensus 244 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-------~~vpyR~S~LT~lL~~~Lgg~s-~t~ 315 (352)
T cd01364 244 KLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-------PHIPYRESKLTRLLQDSLGGRT-KTS 315 (352)
T ss_pred EEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-------CCCCCcccHHHHHHHHhcCCCc-eEE
Confidence 99999999999999999999999999999999999999999999754 8999999999999999999999 999
Q ss_pred EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994 296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH 331 (932)
Q Consensus 296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~ 331 (932)
||+||+|...+++||++||+||++|++|++.|..|.
T Consensus 316 ~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 316 IIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999998763
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=6.5e-55 Score=471.61 Aligned_cols=254 Identities=29% Similarity=0.520 Sum_probs=230.8
Q ss_pred ccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994 60 QILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~ 138 (932)
+||||+++.+...+...++.+ .+..+|.+.+|... .......|.||+||++.++|.+||+.++.|+|+++++|+|+
T Consensus 7 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ 83 (333)
T cd01371 7 VRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD---AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNG 83 (333)
T ss_pred EEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc---ccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCce
Confidence 399999998866666667665 45677888877521 12345589999999999999999999999999999999999
Q ss_pred eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994 139 LLFSFGTTNSGKTFTIQD-------------------------------------------------------------- 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-------------------------------------------------------------- 156 (932)
||||||+|||||||||+|
T Consensus 84 ~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~ 163 (333)
T cd01371 84 TIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERP 163 (333)
T ss_pred eEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcC
Confidence 999999999999999999
Q ss_pred --------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--CCcceeEEEEEEEeCCCCc
Q psy16994 157 --------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEELIMMSSFDICDLAGAE 226 (932)
Q Consensus 157 --------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~~~~~~~s~l~~vDLagse 226 (932)
++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.+.. +......|+|+||||||||
T Consensus 164 ~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsE 243 (333)
T cd01371 164 DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSE 243 (333)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCC
Confidence 888999999999999999999999999999999999999999999988553 3456778999999999999
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCc
Q psy16994 227 RQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAY 306 (932)
Q Consensus 227 ~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~ 306 (932)
|..+++..|.+++|+..||+||++|++||.+|..+. ..|||||+|+||+||+++|+|++ +|+||+||+|...+
T Consensus 244 r~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~------~~~ipyR~SkLT~lL~~~l~g~s-~t~~I~~vsP~~~~ 316 (333)
T cd01371 244 RQSKTGATGDRLKEATKINLSLSALGNVISALVDGK------STHIPYRDSKLTRLLQDSLGGNS-KTVMCANIGPADYN 316 (333)
T ss_pred cccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC------CCcCCCccCHHHHHHHHhcCCCc-eEEEEEEeCCcccc
Confidence 999999999999999999999999999999999753 46999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy16994 307 AEETVQVLKISSVARDL 323 (932)
Q Consensus 307 ~~et~~~l~~~~~~~~i 323 (932)
+++|++||+||++||.|
T Consensus 317 ~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 317 YDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999976
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.3e-54 Score=469.59 Aligned_cols=248 Identities=30% Similarity=0.470 Sum_probs=231.3
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
+||||+...+...+...|+.+.++.+|.+.+|. ....|.||+||+++++|.+||+.++.|+|+.+++|+|+|
T Consensus 8 vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~--------~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 8 CRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD--------DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred EEcCcCChhhhccCCceEEEEcCCCEEEecCCC--------CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccce
Confidence 399999998876777889999888899887653 345899999999999999999999999999999999999
Q ss_pred eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994 140 LFSFGTTNSGKTFTIQD--------------------------------------------------------------- 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G--------------------------------------------------------------- 156 (932)
||+||+|||||||||+|
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 159 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKN 159 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCC
Confidence 99999999999999988
Q ss_pred -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994 157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK 229 (932)
Q Consensus 157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~ 229 (932)
++++.|.|+++++.+|..|..+|..++|.+|..|||||+||+|+|.+.+.. ......|+|+||||||||+..
T Consensus 160 ~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~-~~~~~~s~l~~VDLAGsE~~~ 238 (325)
T cd01369 160 RGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE-TGSKKRGKLFLVDLAGSEKVS 238 (325)
T ss_pred CCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC-CCCEEEEEEEEEECCCCCccc
Confidence 889999999999999999999999999999999999999999999988654 345688999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994 230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE 309 (932)
Q Consensus 230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e 309 (932)
++++.|.+++|+..||+||++|++||.+|..++ ..|||||+|+||+||+++|+|++ +|+||+||+|...++++
T Consensus 239 ~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~------~~~vpyR~S~LT~lL~~~L~g~s-~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 239 KTGAEGQTLEEAKKINKSLSALGNVINALTDGK------STHIPYRDSKLTRILQDSLGGNS-RTTLIICCSPSSYNESE 311 (325)
T ss_pred ccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC------CCcCCCccCHHHHHHHHhcCCCC-eEEEEEEeCCccccHHH
Confidence 999999999999999999999999999999753 38999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy16994 310 TVQVLKISSVARDL 323 (932)
Q Consensus 310 t~~~l~~~~~~~~i 323 (932)
|++||+||++|+.|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999875
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3e-54 Score=463.58 Aligned_cols=244 Identities=30% Similarity=0.488 Sum_probs=222.7
Q ss_pred ccccCCCcccccCCCCceEEEeCC-----CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQ-----KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~ 134 (932)
+||||+.+.+. +...|+.+.+. .++.+.+|.. ......|.||+||++.++|.+||+.++.|+|+.+++
T Consensus 6 vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~-----~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 6 VRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN-----RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred EEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC-----CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 49999988883 34567776554 4777777641 123458999999999999999999999999999999
Q ss_pred CCCceeeecccccCCCcEEEec----------------------------------------------------------
Q psy16994 135 GEDALLFSFGTTNSGKTFTIQD---------------------------------------------------------- 156 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------------- 156 (932)
|+|+|||+||+|||||||||+|
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 9999999999999999999998
Q ss_pred -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994 157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK 229 (932)
Q Consensus 157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~ 229 (932)
++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+.... ....|+|+||||||||+..
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~s~l~~VDLAGsE~~~ 235 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN---IQLEGKLNLIDLAGSEDNR 235 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC---ceEEEEEEEEECCCCCccc
Confidence 889999999999999999999999999999999999999999999987643 3678999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994 230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE 309 (932)
Q Consensus 230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e 309 (932)
.+++.|.+++|+..||+||++|++||.+|..+. .|||||+|+||+||+++|+|++ +|+||+||+|...++.|
T Consensus 236 ~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-------~~ipyr~S~LT~lL~~~L~g~s-~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 236 RTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-------PRIPYRESKLTRLLQDSLGGGS-RCIMVANIAPERSFYQD 307 (319)
T ss_pred ccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-------CcCCCccCHHHHHHHHhcCCCc-cEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999998754 8999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy16994 310 TVQVLKISSVAR 321 (932)
Q Consensus 310 t~~~l~~~~~~~ 321 (932)
|++||+||++||
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 18
>KOG0246|consensus
Probab=100.00 E-value=1.8e-54 Score=452.97 Aligned_cols=257 Identities=26% Similarity=0.388 Sum_probs=230.6
Q ss_pred cccCCCcccccCCCCceEEEeCCCeEEEcCCC-CccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMK-DMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
|=||++..|......++++++..+.++++.|. .+.....-..+.|.||++|+..+++..||..++.|+|..+|+|--+|
T Consensus 215 RKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~AT 294 (676)
T KOG0246|consen 215 RKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMAT 294 (676)
T ss_pred ecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCcee
Confidence 55999999977777889999999999999887 22222222345899999999999999999999999999999999999
Q ss_pred eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994 140 LFSFGTTNSGKTFTIQD--------------------------------------------------------------- 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G--------------------------------------------------------------- 156 (932)
+||||||||||||||.|
T Consensus 295 CFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLE 374 (676)
T KOG0246|consen 295 CFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLE 374 (676)
T ss_pred eeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccccceEEee
Confidence 99999999999999977
Q ss_pred ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994 157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE 226 (932)
Q Consensus 157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse 226 (932)
|++-.|.++++++.+|+.|...|+.+.|..|..|||||+||.|.+.... ....+|+++||||||+|
T Consensus 375 Dg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~----~~k~hGKfSlIDLAGnE 450 (676)
T KOG0246|consen 375 DGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG----EFKLHGKFSLIDLAGNE 450 (676)
T ss_pred cCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC----cceeEeEEEEEEccCCc
Confidence 8899999999999999999999999999999999999999999997632 24578999999999999
Q ss_pred cccc-cccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCC-CCCeeEEEEecCCCc
Q psy16994 227 RQKR-AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSG-LSSTVKMIVNVNASP 304 (932)
Q Consensus 227 ~~~~-~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g-~~~~~~~i~~~~p~~ 304 (932)
|... +.+..++-.||..||+||++|..||++|..++ .|+|||.||||++|+|+|-| ++ +||||+||||..
T Consensus 451 RGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-------~H~PFR~SKLTqVLRDSFIGenS-rTcMIA~ISPg~ 522 (676)
T KOG0246|consen 451 RGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-------SHLPFRGSKLTQVLRDSFIGENS-RTCMIATISPGI 522 (676)
T ss_pred cCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-------CCCCchhhhHHHHHHHhhcCCCC-ceEEEEEeCCCc
Confidence 9654 45566777899999999999999999998865 99999999999999999999 66 999999999999
Q ss_pred CcHHHHHHHHHHHHHhcccccccCC
Q psy16994 305 AYAEETVQVLKISSVARDLLTVAKP 329 (932)
Q Consensus 305 ~~~~et~~~l~~~~~~~~i~~~~~~ 329 (932)
..++.||+|||||.|++++.....+
T Consensus 523 ~ScEhTLNTLRYAdRVKeLsv~~~~ 547 (676)
T KOG0246|consen 523 SSCEHTLNTLRYADRVKELSVDGGP 547 (676)
T ss_pred chhhhhHHHHHHHHHHHhhcCCCCc
Confidence 9999999999999999998876654
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=9.9e-54 Score=461.17 Aligned_cols=248 Identities=29% Similarity=0.489 Sum_probs=227.2
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
+|+||+...+.. +..+++.+.++.+|.+.+|. ....|.||+||+++++|.+||+.++.|+|+.+++|+|+|
T Consensus 6 vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~--------~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 6 VRVRPLNPRESD-NEQVAWSIDNDNTISLEEST--------PGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred EEcCcCCccccc-CCcceEEECCCCEEEEcCCC--------CCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 399999988863 34566777777788887652 345899999999999999999999999999999999999
Q ss_pred eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994 140 LFSFGTTNSGKTFTIQD--------------------------------------------------------------- 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G--------------------------------------------------------------- 156 (932)
||+||+|||||||||+|
T Consensus 77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~ 156 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVV 156 (321)
T ss_pred EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEE
Confidence 99999999999999997
Q ss_pred ---ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC--CcceeEEEEEEEeCCCCcccccc
Q psy16994 157 ---LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EELIMMSSFDICDLAGAERQKRA 231 (932)
Q Consensus 157 ---l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~--~~~~~~s~l~~vDLagse~~~~~ 231 (932)
++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+..... ......|+|+|||||||||....
T Consensus 157 v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~ 236 (321)
T cd01374 157 VAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQT 236 (321)
T ss_pred eCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccC
Confidence 8899999999999999999999999999999999999999999999986543 35678899999999999999988
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHH
Q psy16994 232 HTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 311 (932)
Q Consensus 232 ~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~ 311 (932)
+ .+.+++|+.+||+||++|++||.+|+.++ ...|||||+|+||+||+++|+|++ +++||+||+|...++++|+
T Consensus 237 ~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~-----~~~~vpyR~SkLT~lL~~~L~g~s-~t~~i~~vsp~~~~~~eTl 309 (321)
T cd01374 237 G-AGERRKEGSFINKSLLTLGTVISKLSEGK-----NSGHIPYRDSKLTRILQPSLSGNA-RTAIICTISPASSHVEETL 309 (321)
T ss_pred C-CCccccccchhhhHHHHHHHHHHHHHhcC-----CCCcCCCcCCHHHHHHHHhcCCCc-eEEEEEEeCCccccHHHHH
Confidence 8 89999999999999999999999999875 258999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhccc
Q psy16994 312 QVLKISSVARDL 323 (932)
Q Consensus 312 ~~l~~~~~~~~i 323 (932)
+||+||+++++|
T Consensus 310 ~TL~~a~r~~~i 321 (321)
T cd01374 310 NTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.2e-53 Score=463.75 Aligned_cols=249 Identities=31% Similarity=0.486 Sum_probs=227.1
Q ss_pred ccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCc
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~ 138 (932)
+|+||++..+...+...|+.+.+ +..+.+.+ ...|.||+||+++++|.+||+.++.|+|+.+++|+|+
T Consensus 7 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-----------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ 75 (341)
T cd01372 7 VRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-----------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNA 75 (341)
T ss_pred EECCCCCchhcccCCCeEEEEeCCCCEEEecC-----------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcc
Confidence 39999999887666677776644 44555533 3479999999999999999999999999999999999
Q ss_pred eeeecccccCCCcEEEec--------------------------------------------------------------
Q psy16994 139 LLFSFGTTNSGKTFTIQD-------------------------------------------------------------- 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-------------------------------------------------------------- 156 (932)
|||+||+|||||||||+|
T Consensus 76 ~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l 155 (341)
T cd01372 76 TVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPI 155 (341)
T ss_pred ceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCc
Confidence 999999999999999987
Q ss_pred --------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---------CCccee
Q psy16994 157 --------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---------SEELIM 213 (932)
Q Consensus 157 --------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---------~~~~~~ 213 (932)
++++.|.|+++++.+|..|..+|..++|.+|..|||||+||+|+|.+.... ......
T Consensus 156 ~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~ 235 (341)
T cd01372 156 QIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTL 235 (341)
T ss_pred eEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCcee
Confidence 788999999999999999999999999999999999999999999998654 345578
Q ss_pred EEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCe
Q psy16994 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSST 293 (932)
Q Consensus 214 ~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~ 293 (932)
.|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|..++. +..|||||+|+||+||+++|||++ +
T Consensus 236 ~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~----~~~~ipyR~S~LT~lL~~~Lgg~s-~ 310 (341)
T cd01372 236 TSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK----KGSHVPYRDSKLTRLLQDSLGGNS-H 310 (341)
T ss_pred eEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC----CCCCCCCcccHHHHHHHHhcCCCc-e
Confidence 89999999999999999999999999999999999999999999998752 348999999999999999999999 9
Q ss_pred eEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994 294 VKMIVNVNASPAYAEETVQVLKISSVARDLL 324 (932)
Q Consensus 294 ~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~ 324 (932)
|+||+||+|...++++|++||+||++|++|+
T Consensus 311 t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 311 TLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999884
No 21
>KOG0239|consensus
Probab=100.00 E-value=3.7e-54 Score=489.16 Aligned_cols=264 Identities=30% Similarity=0.477 Sum_probs=229.8
Q ss_pred hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML 129 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v 129 (932)
..+.|+| ||||+.+.+........+...+...+.+..|.... ......|.||+||+|.++|.+||.. +.|+|
T Consensus 314 GnIRV~C----RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv 385 (670)
T KOG0239|consen 314 GNIRVFC----RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGD---KLEPQSFKFDKVFGPLASQDDVFEE-VSPLV 385 (670)
T ss_pred cCceEEE----EecCCCccccccccccccccCCcceeEeecCCCCC---CCccccceeeeecCCcccHHHHHHH-HHHHH
Confidence 3445666 99999998865422222222222345555554211 1122269999999999999999998 89999
Q ss_pred HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------- 156 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------- 156 (932)
.++++|||+||||||||||||||||.|
T Consensus 386 ~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~ 465 (670)
T KOG0239|consen 386 QSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYV 465 (670)
T ss_pred HHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccc
Confidence 999999999999999999999999999
Q ss_pred -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|...+.. ......+.|+|
T Consensus 466 ~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~-t~~~~~g~l~L 544 (670)
T KOG0239|consen 466 GKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL-TGIRVTGVLNL 544 (670)
T ss_pred cceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC-cccccccceeE
Confidence 778999999999999999999999999999999999999999999988544 35567899999
Q ss_pred EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994 220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN 299 (932)
Q Consensus 220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~ 299 (932)
||||||||+.+++.+|.|++|+.+||+||++||.||.+|+.. ..|||||+||||+||+++|||++ +|.|+|+
T Consensus 545 VDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-------~~HiPyRNSKLT~lLq~sLGG~s-KTLmfv~ 616 (670)
T KOG0239|consen 545 VDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-------RSHIPYRNSKLTQLLQDSLGGDS-KTLMFVN 616 (670)
T ss_pred eecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-------CCCCcccccchHHHhHhhhCCcc-ceeeEEE
Confidence 999999999999999999999999999999999999999984 49999999999999999999999 9999999
Q ss_pred cCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 300 VNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
|+|..+++.||+.+|+||++++.+..++...
T Consensus 617 isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 617 ISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred eCccHHHHhhhhhccchHHHhhceecccccc
Confidence 9999999999999999999999999888654
No 22
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.3e-53 Score=457.88 Aligned_cols=250 Identities=28% Similarity=0.486 Sum_probs=223.1
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc-ccc--CCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM-KCS--ITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGE 136 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~ 136 (932)
+|+||+...+ ...+....++.+|.++.|... ... .......|.||+||++ ++|.+||+.++.|+|+++++|+
T Consensus 6 vRvRP~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~ 80 (334)
T cd01375 6 VRVRPTPTKQ----GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGY 80 (334)
T ss_pred EECCCCCCCC----CccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCC
Confidence 3899988744 234555677888888888732 221 2233457999999999 9999999999999999999999
Q ss_pred CceeeecccccCCCcEEEec------------------------------------------------------------
Q psy16994 137 DALLFSFGTTNSGKTFTIQD------------------------------------------------------------ 156 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G------------------------------------------------------------ 156 (932)
|+||||||+|||||||||+|
T Consensus 81 n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~ 160 (334)
T cd01375 81 NGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPA 160 (334)
T ss_pred ccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCc
Confidence 99999999999999999988
Q ss_pred ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcceeEEEEEEE
Q psy16994 157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEELIMMSSFDIC 220 (932)
Q Consensus 157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~~~~s~l~~v 220 (932)
++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... .......|+|+||
T Consensus 161 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~V 240 (334)
T cd01375 161 VTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLV 240 (334)
T ss_pred eEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEE
Confidence 788999999999999999999999999999999999999999999987322 2345678999999
Q ss_pred eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994 221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300 (932)
Q Consensus 221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~ 300 (932)
|||||||..+++..|.+++|+..||+||++|++||.+|+.++ ..|||||+|+||+||+++|||++ +|+||+||
T Consensus 241 DLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~------~~~ipyRdSkLT~lL~d~Lgg~~-~t~~I~~v 313 (334)
T cd01375 241 DLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA------RTHVPYRNSKLTHVLRDSLGGNC-KTVMLATI 313 (334)
T ss_pred ECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC------CCCCCCcccHHHHHHHHhcCCCc-eEEEEEEe
Confidence 999999999999999999999999999999999999999753 48999999999999999999998 99999999
Q ss_pred CCCcCcHHHHHHHHHHHHHhc
Q psy16994 301 NASPAYAEETVQVLKISSVAR 321 (932)
Q Consensus 301 ~p~~~~~~et~~~l~~~~~~~ 321 (932)
+|...++.+|++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 23
>KOG0244|consensus
Probab=100.00 E-value=8.8e-51 Score=453.18 Aligned_cols=253 Identities=29% Similarity=0.424 Sum_probs=230.1
Q ss_pred ccCCCcccccCCCCceEEE-eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994 62 LNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALL 140 (932)
Q Consensus 62 vRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i 140 (932)
|||+...+...+...|+.+ ++...|++. ...+|+||+||....+|.++|+.+|.|+++.+++|||+++
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-----------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatv 69 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-----------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATV 69 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec-----------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhccee
Confidence 6899988877777888774 334444442 3347999999999999999999999999999999999999
Q ss_pred eecccccCCCcEEEec----------------------------------------------------------------
Q psy16994 141 FSFGTTNSGKTFTIQD---------------------------------------------------------------- 156 (932)
Q Consensus 141 ~~~G~tgsGKt~t~~G---------------------------------------------------------------- 156 (932)
+|||||||||||||.+
T Consensus 70 laygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~ 149 (913)
T KOG0244|consen 70 LAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPK 149 (913)
T ss_pred eeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccccC
Confidence 9999999999999976
Q ss_pred -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcccc
Q psy16994 157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQK 229 (932)
Q Consensus 157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~ 229 (932)
++++.|.+..++...|..|...|++++|.||..|||||+||+|.+.+....+.....+++|+|||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 6667788899999999999999999999999999999999999999875444455678999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994 230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE 309 (932)
Q Consensus 230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e 309 (932)
++++.|+|++|+.+||.+|++||+||.+|...+ +..|||||+|+||+||+++||||+ .|+||+||||+..++.+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~k-----k~~~vpyRdSkltrlLQdslgGns-~tlmiaCiSpadsn~~E 303 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAK-----KGGEVPYRDSKLTRLLQDSLGGNS-DTLMIACISPADSNAQE 303 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhh-----cCCcccchHHHHHHHHHHHhcCCc-ceeeeeecChhhhhhhh
Confidence 999999999999999999999999999999876 357999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCC
Q psy16994 310 TVQVLKISSVARDLLTVAKPRH 331 (932)
Q Consensus 310 t~~~l~~~~~~~~i~~~~~~~~ 331 (932)
|++||+||.||+.|.+.|+.|.
T Consensus 304 tlnTl~ya~Rak~iknk~vvN~ 325 (913)
T KOG0244|consen 304 TLNTLRYADRAKQIKNKPVVNQ 325 (913)
T ss_pred HHHHHHHhhHHHHhcccccccc
Confidence 9999999999999999999885
No 24
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.9e-51 Score=446.09 Aligned_cols=249 Identities=33% Similarity=0.515 Sum_probs=226.8
Q ss_pred ccccCCCcccccCCCCceEEEeCC--CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQ--KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED 137 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~ 137 (932)
+|+||+.+.+. ....+++.+.+. .+|.+.++ ......|.||+||+++++|.+||+. +.|+|+.+++|+|
T Consensus 8 vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~ 78 (329)
T cd01366 8 CRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG-------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYN 78 (329)
T ss_pred EEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC-------CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCc
Confidence 39999988875 344567777765 67777553 1244589999999999999999998 6999999999999
Q ss_pred ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994 138 ALLFSFGTTNSGKTFTIQD------------------------------------------------------------- 156 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~G------------------------------------------------------------- 156 (932)
+|||+||+|||||||||+|
T Consensus 79 ~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~ 158 (329)
T cd01366 79 VCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKH 158 (329)
T ss_pred eEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEE
Confidence 9999999999999999998
Q ss_pred ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994 157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE 226 (932)
Q Consensus 157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse 226 (932)
++++.|.|++|+..++..|..+|..+.|.+|..|||||+||+|+|.+.+.. ......|+|+||||||||
T Consensus 159 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 159 DSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-CCcEEEEEEEEEECCCCc
Confidence 678999999999999999999999999999999999999999999998765 345688999999999999
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCc
Q psy16994 227 RQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAY 306 (932)
Q Consensus 227 ~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~ 306 (932)
+..+.++.|.+++|+..||+||++|++||.+|+.+ ..|||||+|+||+||+++|+|++ +++||+||+|...+
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-------~~~ipyr~S~LT~lL~~~l~g~~-~t~~i~~vsp~~~~ 309 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-------DSHVPYRNSKLTYLLQDSLGGNS-KTLMFVNISPLESN 309 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-------CCcCCCcccHhHHHHHHhcCCCc-eEEEEEEeCCchhh
Confidence 99999999999999999999999999999999985 39999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhcccccc
Q psy16994 307 AEETVQVLKISSVARDLLTV 326 (932)
Q Consensus 307 ~~et~~~l~~~~~~~~i~~~ 326 (932)
++||++||+||++++.|+++
T Consensus 310 ~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 310 LSETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999763
No 25
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=9.4e-51 Score=442.88 Aligned_cols=259 Identities=33% Similarity=0.512 Sum_probs=235.7
Q ss_pred ccccCCCcccccCCCCceEEEeCC--CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQ--KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED 137 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~ 137 (932)
+||||+...+......+++.+.+. .+|.+.++. .......|.||+||+++++|.+||+.++.|+|+.++.|+|
T Consensus 6 vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 6 VRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK-----NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred EEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC-----CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 499999998876667778887655 467766553 1234458999999999999999999999999999999999
Q ss_pred ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994 138 ALLFSFGTTNSGKTFTIQD------------------------------------------------------------- 156 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~G------------------------------------------------------------- 156 (932)
+|||+||++||||||||+|
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 9999999999999999997
Q ss_pred ------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCC-CCCcceeEEEEEEEeCCCCcccc
Q psy16994 157 ------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP-GSEELIMMSSFDICDLAGAERQK 229 (932)
Q Consensus 157 ------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~-~~~~~~~~s~l~~vDLagse~~~ 229 (932)
++++.|.|++++..+|..|..+|..++|.+|..|||||+||+|+|.+... ........|+|+||||||+|+..
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~ 240 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERAS 240 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccc
Confidence 88999999999999999999999999999999999999999999997722 23456789999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHH
Q psy16994 230 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEE 309 (932)
Q Consensus 230 ~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~e 309 (932)
..++.|.+++|+..||+||.+|++||.+|+.++ +..++|||+|+||+||+++|+|++ +++||+||+|...++++
T Consensus 241 ~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~-----~~~~ip~r~S~LT~lL~~~L~g~~-~~~~i~~vsp~~~~~~e 314 (335)
T smart00129 241 KTGAEGDRLKEAGNINKSLSALGNVINALADGQ-----KSRHIPYRDSKLTRLLQDSLGGNS-KTLMIANISPSLSNLEE 314 (335)
T ss_pred cccChhHHHHhhchhhhHHHHHHHHHHHHHhcC-----CCCCCCCcCcHhHHHHHHHcCCCC-eEEEEEEcCCCccchHH
Confidence 999999999999999999999999999999864 458999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhcccccccCC
Q psy16994 310 TVQVLKISSVARDLLTVAKP 329 (932)
Q Consensus 310 t~~~l~~~~~~~~i~~~~~~ 329 (932)
|++||+||+++++|++.|+.
T Consensus 315 Tl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 315 TLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999864
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.3e-49 Score=433.64 Aligned_cols=252 Identities=35% Similarity=0.560 Sum_probs=229.1
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
+|+||+...+ ..+...++.+.++.+|.+.+|... .......|.||+||+++++|.+||+.++.|+|++++.|+|+|
T Consensus 6 vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~ 81 (328)
T cd00106 6 VRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDG---RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGT 81 (328)
T ss_pred EEcCCCCccc-ccCCCcEEEECCCCEEEEecCccc---cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCcee
Confidence 3999988766 334567888888899999887632 223456899999999999999999999999999999999999
Q ss_pred eeecccccCCCcEEEec---------------------------------------------------------------
Q psy16994 140 LFSFGTTNSGKTFTIQD--------------------------------------------------------------- 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G--------------------------------------------------------------- 156 (932)
||+||++||||||||+|
T Consensus 82 i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~ 161 (328)
T cd00106 82 IFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPK 161 (328)
T ss_pred EEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCC
Confidence 99999999999999999
Q ss_pred -------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCc-ceeEEEEEEEeCCCCccc
Q psy16994 157 -------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE-LIMMSSFDICDLAGAERQ 228 (932)
Q Consensus 157 -------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~-~~~~s~l~~vDLagse~~ 228 (932)
++++.|.|+++++.+|..|..+|..++|..|..|||||+||+|+|.+.+..... ....|+|+||||||+|+.
T Consensus 162 ~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~ 241 (328)
T cd00106 162 GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERA 241 (328)
T ss_pred CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcc
Confidence 678999999999999999999999999999999999999999999998665321 478899999999999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHH
Q psy16994 229 KRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAE 308 (932)
Q Consensus 229 ~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~ 308 (932)
...++.+.++.|+..||+||++|++||.+|..++ +..|||||+|+||+||+++|+|++ +++||+||+|...++.
T Consensus 242 ~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~-----~~~~ip~r~SkLT~lL~~~l~g~~-~t~~I~~vsp~~~~~~ 315 (328)
T cd00106 242 KKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ-----KKKHIPYRDSKLTRLLQDSLGGNS-KTLMIANISPSSENYD 315 (328)
T ss_pred cccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC-----CCCcCCCcCcHHHHHHHHhcCCCC-eEEEEEEeCCchhhHH
Confidence 9999999999999999999999999999999864 258999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy16994 309 ETVQVLKISSVAR 321 (932)
Q Consensus 309 et~~~l~~~~~~~ 321 (932)
+|++||+||++|+
T Consensus 316 eTl~tL~~a~r~~ 328 (328)
T cd00106 316 ETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 27
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.5e-51 Score=445.68 Aligned_cols=255 Identities=33% Similarity=0.546 Sum_probs=219.2
Q ss_pred cccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994 61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALL 140 (932)
Q Consensus 61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i 140 (932)
||||+++.|.......++.+.+..... +..............|.||+||+++++|.+||+.++.|+|+.+++|+|+||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 78 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQ--NKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATI 78 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEE--EEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCcccc--ccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEE
Confidence 789999999666666666554311000 000111112233458999999999999999999999999999999999999
Q ss_pred eecccccCCCcEEEec----------------------------------------------------------------
Q psy16994 141 FSFGTTNSGKTFTIQD---------------------------------------------------------------- 156 (932)
Q Consensus 141 ~~~G~tgsGKt~t~~G---------------------------------------------------------------- 156 (932)
|+||+|||||||||+|
T Consensus 79 ~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred EeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 9999999999999999
Q ss_pred ------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCc---ceeEEEEEEEe
Q psy16994 157 ------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE---LIMMSSFDICD 221 (932)
Q Consensus 157 ------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~---~~~~s~l~~vD 221 (932)
++++.|.|+++++.+|..|..+|..+.|.+|..|||||+||+|+|.+....... ....|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 778999999999999999999999999999999999999999999999655433 26889999999
Q ss_pred CCCCcccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994 222 LAGAERQKRAHT-SGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300 (932)
Q Consensus 222 Lagse~~~~~~~-~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~ 300 (932)
|||+|+....+. .+.+++|+..||+||++|++||.+|+.+. ...+||||+|+||+||+++|+|++ +++||+||
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~-----~~~~vpyr~SkLT~lL~d~l~g~s-~t~~I~~v 312 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGS-----KQSHVPYRDSKLTRLLKDSLGGNS-KTILIVCV 312 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----STSSSCGGGSHHHHHTGGGTSSSS-EEEEEEEE
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccc-----cchhhhhhcccccceecccccccc-cceeEEEc
Confidence 999999998886 48889999999999999999999999872 359999999999999999999998 99999999
Q ss_pred CCCcCcHHHHHHHHHHHHHhccc
Q psy16994 301 NASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 301 ~p~~~~~~et~~~l~~~~~~~~i 323 (932)
+|...+|++|++||+||+++++|
T Consensus 313 sp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 313 SPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp -SBGGGHHHHHHHHHHHHHHTTE
T ss_pred CCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-43 Score=403.84 Aligned_cols=223 Identities=35% Similarity=0.564 Sum_probs=209.7
Q ss_pred CcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------
Q psy16994 102 CNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------- 156 (932)
Q Consensus 102 ~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------- 156 (932)
...|.||+||+|.++|.+||..++.|+++.++.||||||||||+|||||||||.|
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 3479999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCc
Q psy16994 157 ------------------------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSH 194 (932)
Q Consensus 157 ------------------------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh 194 (932)
++.+.|.++++++.+|..|..+|+++.|.+|..|||||
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRsh 214 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSH 214 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccce
Confidence 88899999999999999999999999999999999999
Q ss_pred cEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccC
Q psy16994 195 CVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274 (932)
Q Consensus 195 ~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~ 274 (932)
+||+++|.+.+..... ...++|+||||||||++..++..+.+++|+..||+||.+||+||.+|.... +..||||
T Consensus 215 si~~i~~~~~~~~~~~-~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~-----~~~~ipy 288 (568)
T COG5059 215 SIFQIELASKNKVSGT-SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKK-----KSGHIPY 288 (568)
T ss_pred EEEEEEEEEeccCccc-eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccc-----cCCccch
Confidence 9999999999766332 233799999999999999999999999999999999999999999999742 4599999
Q ss_pred CCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH 331 (932)
Q Consensus 275 r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~ 331 (932)
|+|+||++|+++|||++ +|+|||||+|...++++|.+||+||++|+.|.+.+..+.
T Consensus 289 ReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 289 RESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999999999999 999999999999999999999999999999999887653
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5e-43 Score=346.17 Aligned_cols=174 Identities=31% Similarity=0.515 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecc---eEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccE
Q psy16994 120 LFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDL---TYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCV 196 (932)
Q Consensus 120 v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl---~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i 196 (932)
||+.++ |+|..+++|+|+|||+||+|||||||||+|- .-+.-...++++.++..|..+|.++.|.+|..|||||+|
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i 86 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSV 86 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHHHHHHhhccccccccccCCCCccCcccEE
Confidence 999988 9999999999999999999999999999982 233345567799999999999999999999999999999
Q ss_pred EEEEEEEeCCC--CCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccC
Q psy16994 197 FSIKLVKVDPG--SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 274 (932)
Q Consensus 197 ~~i~v~~~~~~--~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~ 274 (932)
|+|+|.+.+.. +......|+|+||||||||+...++..+.+++|+..||+||++|++||.+|+.++ .+|||
T Consensus 87 ~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-------~~vpy 159 (186)
T cd01363 87 FRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-------SHVPY 159 (186)
T ss_pred EEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-------CCCCC
Confidence 99999988543 2355678999999999999999999999999999999999999999999999754 89999
Q ss_pred CCCchHHhhhhhcCCCCCeeEEEEecCC
Q psy16994 275 RDSKLTQIFQRSLSGLSSTVKMIVNVNA 302 (932)
Q Consensus 275 r~s~LT~ll~~~l~g~~~~~~~i~~~~p 302 (932)
|+||||+||+|+|+|++ +|+||+||+|
T Consensus 160 r~SkLT~lL~~~L~g~~-~t~~i~~vsP 186 (186)
T cd01363 160 RESKLTRLLQDSLGGNS-RTLMVACISP 186 (186)
T ss_pred cccHHHHHHHHhcCCCC-eEEEEEEeCc
Confidence 99999999999999999 9999999998
No 30
>KOG0933|consensus
Probab=99.69 E-value=1.3e-10 Score=131.76 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=69.6
Q ss_pred ChHHHHHHHH----HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy16994 377 DPYETIRLLE----ARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE--DLERQRKFYKT 450 (932)
Q Consensus 377 ~~~el~~~~e----~~l~~~e~~~~~~~e~~~ree~~~~~~E~~~~l~e~~~~~~~~l~~e~~~~ee--~~~~~~e~l~~ 450 (932)
.|.|+++++| ++|| +.++..+...++.++. ++.|++..|.+.+.|...+|+.++..+.+ .....++.+.+
T Consensus 157 Kp~EILsMvEEAAGTrmy-e~kKe~A~ktiekKet---KlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R 232 (1174)
T KOG0933|consen 157 KPSEILSMVEEAAGTRMY-ENKKEAAEKTIEKKET---KLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSR 232 (1174)
T ss_pred CcHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999 8999 6666999999999999 99999999999999999999999999988 34566778888
Q ss_pred HHHHHHhHhh
Q psy16994 451 QIETLMTLVK 460 (932)
Q Consensus 451 ~~~~~~~~~~ 460 (932)
.+.++.|...
T Consensus 233 ~~ia~eY~~~ 242 (1174)
T KOG0933|consen 233 ICIAYEYLQA 242 (1174)
T ss_pred HHHHHHHHHH
Confidence 8888877543
No 31
>KOG0161|consensus
Probab=99.67 E-value=1.3e-10 Score=145.00 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.6
Q ss_pred CCCCceeeecccccCCCcE
Q psy16994 134 NGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~ 152 (932)
++.|.+|+..|-+|+|||-
T Consensus 165 ~renQSiLiTGESGAGKTe 183 (1930)
T KOG0161|consen 165 DRENQSILITGESGAGKTE 183 (1930)
T ss_pred cCCCceEeeecCCCCCcch
Confidence 6889999999999999995
No 32
>KOG0161|consensus
Probab=99.64 E-value=1.1e-09 Score=136.82 Aligned_cols=76 Identities=25% Similarity=0.331 Sum_probs=47.7
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 796 EASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 796 ~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
...+..+......+..+++.++.+++........+...+.+++..++.|..++++.+..+..+...+..+..++..
T Consensus 1286 e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~ 1361 (1930)
T KOG0161|consen 1286 EAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQ 1361 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666667777777766666677777777777777777777777666666555555544444443
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=2.2e-09 Score=133.91 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q psy16994 842 NNLKAQMEKSQQQQQQQRSPLKGLENQMAKINID 875 (932)
Q Consensus 842 ~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~ 875 (932)
..+...+.........+...+..++..+..+...
T Consensus 649 e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 682 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555556666666653
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=5.2e-09 Score=130.52 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=11.5
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
..+-+|++|||||..
T Consensus 25 ~~~i~G~Ng~GKSti 39 (880)
T PRK02224 25 VTVIHGVNGSGKSSL 39 (880)
T ss_pred eEEEECCCCCCHHHH
Confidence 334489999999874
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.55 E-value=1.3e-10 Score=151.13 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=45.6
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q psy16994 793 PSLEASAATPSQYRKQLEDQVNSLK----AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRS 860 (932)
Q Consensus 793 ~~L~~~l~~~~~~~~~l~~e~~~l~----~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~ 860 (932)
..++.++..++. ..++|..+. .+++++..+..+|...+..+...+..+...+...-....+...
T Consensus 968 ~~l~~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~ 1035 (1179)
T TIGR02168 968 EEARRRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035 (1179)
T ss_pred HHHHHHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 333444445 7888999999999999999999999999998888755444443
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.49 E-value=1.5e-09 Score=141.08 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=11.8
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
+.+-+||+|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 4456799999998744
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.47 E-value=1.4e-09 Score=141.10 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=45.4
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16994 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK 850 (932)
Q Consensus 793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~ 850 (932)
..+..++..+...+.....+|+.+..++.++..+..++...+..+...+..|+.....
T Consensus 961 ~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~ 1018 (1164)
T TIGR02169 961 QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018 (1164)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667778899999999999999999999998888888888865544
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.45 E-value=5.6e-07 Score=114.20 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=13.5
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.+..|+++.| ||.|||||-.
T Consensus 21 ~f~~~~t~Iv---GPNGSGKSNI 40 (1163)
T COG1196 21 NFSPGFTAIV---GPNGSGKSNI 40 (1163)
T ss_pred ecCCCCeEEE---CCCCCchHHH
Confidence 3345666543 9999999753
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.45 E-value=5.3e-09 Score=132.34 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=47.3
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16994 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS 851 (932)
Q Consensus 793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~ 851 (932)
..++.++..+...+....++|+.+..+++.+..+..++...+..+.+.+.+++......
T Consensus 952 ~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196 952 ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777788899999999999999999999988888888888887766544
No 40
>KOG0996|consensus
Probab=99.44 E-value=8.9e-07 Score=103.22 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=9.1
Q ss_pred cccccCCCcEE
Q psy16994 143 FGTTNSGKTFT 153 (932)
Q Consensus 143 ~G~tgsGKt~t 153 (932)
.||.|||||-.
T Consensus 114 vGPNGSGKSNV 124 (1293)
T KOG0996|consen 114 VGPNGSGKSNV 124 (1293)
T ss_pred ECCCCCCchHH
Confidence 49999999853
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.41 E-value=6.1e-08 Score=106.80 Aligned_cols=86 Identities=33% Similarity=0.456 Sum_probs=44.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 510 MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589 (932)
Q Consensus 510 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l 589 (932)
++.++.....+...+......++.+...++.++..++ ..+.....+...+......+......+..+...+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~---------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE---------AELEQEEEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666665555 5555555555555444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q psy16994 590 SEERRLLTVRSAELE 604 (932)
Q Consensus 590 ~~~~~~l~~~l~~l~ 604 (932)
..+.......+..+.
T Consensus 212 ~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 212 KEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=99.41 E-value=5.5e-07 Score=112.78 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.1
Q ss_pred eecccccCCCcEEE
Q psy16994 141 FSFGTTNSGKTFTI 154 (932)
Q Consensus 141 ~~~G~tgsGKt~t~ 154 (932)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36799999998743
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.40 E-value=1.7e-08 Score=130.90 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=10.3
Q ss_pred eecccccCCCcEE
Q psy16994 141 FSFGTTNSGKTFT 153 (932)
Q Consensus 141 ~~~G~tgsGKt~t 153 (932)
+-+|++|||||..
T Consensus 27 ~i~G~NGsGKS~i 39 (1164)
T TIGR02169 27 VISGPNGSGKSNI 39 (1164)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999863
No 44
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=2.3e-07 Score=119.12 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 730 CEELTQQVTKLEADCQSYLNTIKNMENDERST 761 (932)
Q Consensus 730 ~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l 761 (932)
+..++.++..+...+..+..++..+......+
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l 1017 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWL 1017 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.37 E-value=1.8e-07 Score=103.14 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=45.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL 582 (932)
Q Consensus 503 l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l 582 (932)
...+...+......++.+...++..+..++..+...+.....+. .....+......+..+...+
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~----------------~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK----------------QQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555554444444 44444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 583 RSEVEKLSEERRLLTVRSAELEYEL 607 (932)
Q Consensus 583 ~~~l~~l~~~~~~l~~~l~~l~~~l 607 (932)
..+..++...+..++..+..+....
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555665555555444
No 46
>KOG0250|consensus
Probab=99.37 E-value=1.6e-06 Score=101.29 Aligned_cols=46 Identities=33% Similarity=0.362 Sum_probs=27.8
Q ss_pred eecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCC--------CCccEEEEEEEEe
Q psy16994 141 FSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSS--------RSHCVFSIKLVKV 204 (932)
Q Consensus 141 ~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ss--------rsh~i~~i~v~~~ 204 (932)
|..|+.|||||- ++..|..|...|..+. |..|| -+-+.++|++...
T Consensus 66 fI~G~NGSGKSA---------------IltAl~lglG~rAs~t---nRgsslK~lIK~G~~~A~IsItL~N~ 119 (1074)
T KOG0250|consen 66 FIVGNNGSGKSA---------------ILTALTLGLGGRASAT---NRGSSLKDLIKDGCSSAKISITLSNS 119 (1074)
T ss_pred EeecCCCCcHHH---------------HHHHHHHhhccccccc---cchhhHHHHHhCCCcceEEEEEEecC
Confidence 778999999954 5555666666664432 22222 1455677777654
No 47
>KOG0250|consensus
Probab=99.37 E-value=8.4e-07 Score=103.61 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994 803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857 (932)
Q Consensus 803 ~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~ 857 (932)
......+..++..+..+..............+......+..+..++....+.++.
T Consensus 754 ~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s 808 (1074)
T KOG0250|consen 754 EAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS 808 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444444444444455555555544444444
No 48
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=5.3e-07 Score=115.88 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596 (932)
Q Consensus 558 ~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l 596 (932)
+..++.++......+..+...+..+..+...+..++..+
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 49
>KOG4674|consensus
Probab=99.36 E-value=1.6e-06 Score=107.20 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=8.2
Q ss_pred HHHhhcCCCCCCC
Q psy16994 18 NILFNSLGPYLDK 30 (932)
Q Consensus 18 dviFnSi~~~~~~ 30 (932)
|+.|..|.++++.
T Consensus 11 ~~~~~~~~~~V~~ 23 (1822)
T KOG4674|consen 11 DVLSEDISPLVDV 23 (1822)
T ss_pred hcchhhccccccc
Confidence 4677777666643
No 50
>KOG0996|consensus
Probab=99.35 E-value=3.4e-06 Score=98.53 Aligned_cols=70 Identities=13% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhcc
Q psy16994 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDR 876 (932)
Q Consensus 807 ~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~ 876 (932)
..+...+..+..+++.+.....++.......+..+....+-+.++......+...+..++.....+..+|
T Consensus 945 ~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~r 1014 (1293)
T KOG0996|consen 945 SELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAER 1014 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444555555555555555555555555556666666666555543
No 51
>KOG4674|consensus
Probab=99.35 E-value=4.1e-06 Score=103.74 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 734 TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELA 784 (932)
Q Consensus 734 ~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~ 784 (932)
...+.....++..++..+.....-+......+.+....++.+++....++.
T Consensus 918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~t 968 (1822)
T KOG4674|consen 918 KEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKIT 968 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444333333
No 52
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.35 E-value=2.4e-06 Score=100.01 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q psy16994 838 GEMINNLKAQM 848 (932)
Q Consensus 838 ~~~~~~L~~~l 848 (932)
.+.+..|..++
T Consensus 527 rek~~kl~~ql 537 (775)
T PF10174_consen 527 REKHEKLEKQL 537 (775)
T ss_pred hhHHHHHHHHH
Confidence 33333333333
No 53
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.35 E-value=4.1e-06 Score=98.09 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16994 802 PSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK 850 (932)
Q Consensus 802 ~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~ 850 (932)
+..............+.+++.+...+..+......++..|..|...+++
T Consensus 553 Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 553 LEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEK 601 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444555555554433
No 54
>PRK01156 chromosome segregation protein; Provisional
Probab=99.30 E-value=7.1e-06 Score=102.53 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.2
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
+.+-+|++|||||..
T Consensus 25 i~~I~G~NGsGKSsi 39 (895)
T PRK01156 25 INIITGKNGAGKSSI 39 (895)
T ss_pred eEEEECCCCCCHHHH
Confidence 556789999999864
No 55
>KOG0964|consensus
Probab=99.30 E-value=8.8e-06 Score=93.06 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=50.7
Q ss_pred cccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeC
Q psy16994 143 FGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDL 222 (932)
Q Consensus 143 ~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDL 222 (932)
.|..|||||-.++..+.|-+.-+..+..-=+.|+-+-..+++- -|+.+-|.....+. ..+...+.+.++-.
T Consensus 31 VGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG~~V-------~sA~VEIvF~nsdn--r~~~~k~Ev~lrRt 101 (1200)
T KOG0964|consen 31 VGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSGAMV-------MSASVEIVFDNSDN--RLPRGKSEVSLRRT 101 (1200)
T ss_pred ecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCCcce-------EEEEEEEEEeCccc--ccCCCCCeEEEEEe
Confidence 4999999998777777666655544422222222222122211 24445554433322 22223344555544
Q ss_pred CCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy16994 223 AGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 263 (932)
Q Consensus 223 agse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~ 263 (932)
.|-- +.--.++.-+.+=|.|+.-|-+.+-
T Consensus 102 VGlK------------KDeY~lD~k~Vtk~evvnLLESAGF 130 (1200)
T KOG0964|consen 102 VGLK------------KDEYFLDNKMVTKGEVVNLLESAGF 130 (1200)
T ss_pred eccc------------chhhhcccccccHHHHHHHHHhcCc
Confidence 4432 1233455555566778888877653
No 56
>KOG0964|consensus
Probab=99.21 E-value=2.3e-05 Score=89.76 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994 834 LLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869 (932)
Q Consensus 834 l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l 869 (932)
+..+...|..|..++..+....-+.......|+..+
T Consensus 787 l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 787 LSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444344444444444
No 57
>KOG0976|consensus
Probab=99.19 E-value=7.2e-06 Score=91.22 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=12.3
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHN 825 (932)
Q Consensus 795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~ 825 (932)
+++.+.....++..|.....++...++.+.+
T Consensus 370 i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 370 IQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444344444444433334333333333
No 58
>KOG4643|consensus
Probab=99.17 E-value=1.1e-05 Score=92.55 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589 (932)
Q Consensus 561 l~~~l~~~~~~l~~l~~~i~~l~~~l~~l 589 (932)
++.+++++...-.-+.+..+-++.++..+
T Consensus 262 ykdRveelkedN~vLleekeMLeeQLq~l 290 (1195)
T KOG4643|consen 262 YKDRVEELKEDNRVLLEEKEMLEEQLQKL 290 (1195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444333433444444444333
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.16 E-value=0.0001 Score=93.90 Aligned_cols=9 Identities=11% Similarity=0.014 Sum_probs=3.9
Q ss_pred CCCceeeec
Q psy16994 135 GEDALLFSF 143 (932)
Q Consensus 135 g~~~~i~~~ 143 (932)
|.-|||++|
T Consensus 79 G~~~~vvl~ 87 (1201)
T PF12128_consen 79 GQLCCVVLS 87 (1201)
T ss_pred CceeEEEEe
Confidence 433444444
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.16 E-value=8.6e-05 Score=94.65 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=11.1
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
-+-..|..|+|||+.
T Consensus 19 ~t~i~GTNG~GKTTl 33 (1201)
T PF12128_consen 19 HTHICGTNGVGKTTL 33 (1201)
T ss_pred ceeeecCCCCcHHHH
Confidence 344569999999874
No 61
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.11 E-value=6.7e-05 Score=86.37 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy16994 739 KLEADCQSYLNTIKN 753 (932)
Q Consensus 739 ~l~~~l~~l~~~l~~ 753 (932)
.+...+..++.++..
T Consensus 306 ~L~~~vesL~~ELe~ 320 (522)
T PF05701_consen 306 SLRASVESLRSELEK 320 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.09 E-value=4e-05 Score=89.63 Aligned_cols=49 Identities=8% Similarity=0.109 Sum_probs=30.7
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16994 794 SLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMIN 842 (932)
Q Consensus 794 ~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~ 842 (932)
.+..++....-....+..++......++.+..+..++......++..|.
T Consensus 459 ~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq 507 (569)
T PRK04778 459 ALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ 507 (569)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666522233444447777777777777777777777666665554
No 63
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.09 E-value=1.5e-11 Score=148.24 Aligned_cols=362 Identities=19% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL 564 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~ 564 (932)
.|+.+......++.....+..++..+...+..+.......+.....++..+..+..++.... ..+..+...
T Consensus 139 qle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e---------r~~~el~~~ 209 (859)
T PF01576_consen 139 QLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE---------RQRNELTEQ 209 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444455555544444444 444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16994 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYER 644 (932)
Q Consensus 565 l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~ 644 (932)
...+..++.++...+......+..+......+..++.+++..+.........+...+..+..++..+...+.. -..
T Consensus 210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee----E~e 285 (859)
T PF01576_consen 210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE----EEE 285 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh----hhh
Confidence 4444444444444444444444444444444444444444444444433334444444444444444444433 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 645 LMSEKENLISQLKADLESNRAESNQSAHD-EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723 (932)
Q Consensus 645 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~-~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l 723 (932)
....+...+..+..++..+...+..-... ...+...-..+...+..+...+......+..++.....+..++.++...+
T Consensus 286 ~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eL 365 (859)
T PF01576_consen 286 AKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSEL 365 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333321111 11222222223333333444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhcCch
Q psy16994 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPS 803 (932)
Q Consensus 724 ~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~~~L~~~l~~~~ 803 (932)
.........+.+....+...+..+......+...+..+...... +..++-.+.... +.+...+..+.
T Consensus 366 e~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-----------~~te~~~Lk~~l--ee~~e~~e~le 432 (859)
T PF01576_consen 366 EKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE-----------LETELFKLKNEL--EELQEQLEELE 432 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHhhh--HHHHHHHHHHH
Confidence 44444433444333333333333333333333333332222222 111222222211 34556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994 804 QYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872 (932)
Q Consensus 804 ~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l 872 (932)
..+..|..++.++...+......+.+|...+..++..+..+..+|++....++..+.....++..|..+
T Consensus 433 re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 433 RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887777778888888888888888888888888888887777777777777654
No 64
>KOG0933|consensus
Probab=99.08 E-value=1.4e-05 Score=91.85 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732 (932)
Q Consensus 653 ~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~ 732 (932)
...+.-+.+.+..++...+..+..+...+..+..++..+...+...+.....+..++......+.....++..+-.....
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~ 896 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK 896 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence 33333333333333333333333333333333333333333333333333444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767 (932)
Q Consensus 733 l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~ 767 (932)
+..+.......+..+..++..+..+.......+..
T Consensus 897 ~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~ 931 (1174)
T KOG0933|consen 897 CLSEKSDGELERKKLEHEVTKLESEKANARKEVEK 931 (1174)
T ss_pred HHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 44444444444444444444444444444333333
No 65
>KOG0976|consensus
Probab=99.07 E-value=7.6e-05 Score=83.36 Aligned_cols=21 Identities=5% Similarity=0.245 Sum_probs=10.4
Q ss_pred HHHHHHHhccchhHHHHHHHH
Q psy16994 851 SQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 851 ~~~~~~~~~~~l~~le~~l~~ 871 (932)
+.........++..+++++.+
T Consensus 488 lKaen~rqakkiefmkEeiQe 508 (1265)
T KOG0976|consen 488 LKAENERQAKKIEFMKEEIQE 508 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333455566666655
No 66
>KOG0971|consensus
Probab=99.06 E-value=9.9e-06 Score=91.56 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=7.2
Q ss_pred ceecceecCCCC
Q psy16994 104 LYRFSNIYGPHT 115 (932)
Q Consensus 104 ~f~fd~v~~~~~ 115 (932)
.|.+|.-||.++
T Consensus 57 YF~Cd~ncG~FV 68 (1243)
T KOG0971|consen 57 YFECDENCGVFV 68 (1243)
T ss_pred eEecCCCcceEe
Confidence 566666666554
No 67
>KOG4643|consensus
Probab=99.03 E-value=0.00015 Score=83.72 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q psy16994 483 KLKIQNLKQELSELEAKYKSLSEEHEDMS 511 (932)
Q Consensus 483 k~~i~~l~~~l~~l~~~l~~l~~~l~~~~ 511 (932)
+..+.+++.....|.....-|++++..+.
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lr 291 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLR 291 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444554444444444444444444433
No 68
>KOG0971|consensus
Probab=99.02 E-value=1.5e-05 Score=90.24 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q psy16994 489 LKQELSELEAKYKSLSEEHE 508 (932)
Q Consensus 489 l~~~l~~l~~~l~~l~~~l~ 508 (932)
|..++.+|.++++.+..+..
T Consensus 229 Lr~QvrdLtEkLetlR~kR~ 248 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRA 248 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55555555555555544433
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.90 E-value=0.00042 Score=80.12 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=9.6
Q ss_pred ccccccccccccccccc
Q psy16994 915 GLAENVNLITPRRIFFL 931 (932)
Q Consensus 915 ~~~~~~~~~~~~~~~~~ 931 (932)
..-++||+...|-|-|+
T Consensus 587 npq~~p~L~~~pcipff 603 (617)
T PF15070_consen 587 NPQEHPGLGSNPCIPFF 603 (617)
T ss_pred CcccCCCCCCCCcccce
Confidence 33446666666666443
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.89 E-value=0.00053 Score=80.34 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16994 532 EGKVAQLSR 540 (932)
Q Consensus 532 ~~~~~~l~~ 540 (932)
+..+..++.
T Consensus 171 e~~l~~~e~ 179 (569)
T PRK04778 171 EKQLENLEE 179 (569)
T ss_pred HHHHHHHHH
Confidence 333333333
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.88 E-value=0.00036 Score=80.87 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994 805 YRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA 870 (932)
Q Consensus 805 ~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~ 870 (932)
....+..++..+..........+.+|+..+........+-...|...++.+......|..|+.++-
T Consensus 399 e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC 464 (717)
T PF09730_consen 399 EVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVC 464 (717)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333344566666666666666666666666666666666666666666664
No 72
>KOG0977|consensus
Probab=98.87 E-value=3e-05 Score=85.95 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=45.1
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869 (932)
Q Consensus 793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l 869 (932)
..|..++.++...+..|...+++|+-++.... +-.+..|..++..+..|..++..+-.+++.+-+---.|..++
T Consensus 306 ~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~---r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI 379 (546)
T KOG0977|consen 306 SGLRAKLSELESRNSALEKRIEDLEYQLDEDQ---RSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEI 379 (546)
T ss_pred cchhhhhccccccChhHHHHHHHHHhhhhhhh---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHH
Confidence 34777888888888888888888877765432 233444555555566666666555555555544333444444
No 73
>KOG0994|consensus
Probab=98.86 E-value=0.00062 Score=79.36 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994 819 ELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872 (932)
Q Consensus 819 el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l 872 (932)
+.+.+.....+|-.+-..+-..+++|+..+...+..+......|..|+++++.+
T Consensus 1690 rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 344444555555555555556667777777777777777777777888877764
No 74
>KOG4673|consensus
Probab=98.85 E-value=0.00042 Score=76.53 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16994 806 RKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ 854 (932)
Q Consensus 806 ~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~ 854 (932)
...+...+..-+.+......+...++..+.+++++++.|..++.+....
T Consensus 713 ~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 713 QGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555556666666667777777766666555544
No 75
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.83 E-value=5.6e-10 Score=134.86 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy16994 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINI 874 (932)
Q Consensus 795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~ 874 (932)
|...+..+......+..+...|..++..+...+.+....+..++.....|+.++.++...+.+++..+...+....++..
T Consensus 417 Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~ 496 (859)
T PF01576_consen 417 LKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQV 496 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343334444444444444444444444444444455566666666666666666666667777666666666666
Q ss_pred ccCCCCC
Q psy16994 875 DRSPSGE 881 (932)
Q Consensus 875 ~~~~~~~ 881 (932)
.....+.
T Consensus 497 el~~~r~ 503 (859)
T PF01576_consen 497 ELQQLRQ 503 (859)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6554433
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.82 E-value=0.00073 Score=85.98 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=14.8
Q ss_pred ceeeecccccCCCcEEEec
Q psy16994 138 ALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~G 156 (932)
+++.-+|++|+|||++|-.
T Consensus 28 ~~~~l~G~NGaGKSTll~a 46 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMAA 46 (1486)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3566679999999987654
No 77
>KOG0612|consensus
Probab=98.81 E-value=0.00053 Score=81.28 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994 828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857 (932)
Q Consensus 828 ~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~ 857 (932)
.+++++...+...+..++.+++....++..
T Consensus 789 ~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~ 818 (1317)
T KOG0612|consen 789 KMLEKQLKKLLDELAELKKQLEEENAQLRG 818 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444555555555555544444443
No 78
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.81 E-value=0.0017 Score=80.98 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=29.2
Q ss_pred CceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccc--cccccCccCCCCCccEEEEEEE
Q psy16994 137 DALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLS--VAPTELNHRSSRSHCVFSIKLV 202 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~--~~~t~~n~~ssrsh~i~~i~v~ 202 (932)
++..+-+|+||||||. .=||+.+--.|...|. .....+....+++ +.|.+.+.
T Consensus 25 ~gi~lI~G~nGsGKSS------------IldAI~~ALyG~~~~~~~~~~~~~i~~g~~~-~~V~l~F~ 79 (908)
T COG0419 25 SGIFLIVGPNGAGKSS------------ILDAITFALYGKTPRLGAFSLDDLIRAGEKS-ASVELEFE 79 (908)
T ss_pred CCeEEEECCCCCcHHH------------HHHHHHHHHcCCCCCccchhhhHHHhcCCcc-EEEEEEEE
Confidence 4455668999999975 3455555555555542 2222333333445 55555554
No 79
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.80 E-value=0.00016 Score=78.45 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q psy16994 489 LKQELSELEAKY 500 (932)
Q Consensus 489 l~~~l~~l~~~l 500 (932)
|+.+...|+.++
T Consensus 23 LE~~N~~Le~~i 34 (312)
T PF00038_consen 23 LEQENKRLESEI 34 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhhhHHHH
Confidence 333333333333
No 80
>KOG0612|consensus
Probab=98.78 E-value=0.00057 Score=81.03 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=3.7
Q ss_pred EEEEEEeCC
Q psy16994 215 SSFDICDLA 223 (932)
Q Consensus 215 s~l~~vDLa 223 (932)
|.|-|.|.+
T Consensus 212 GHikLADFG 220 (1317)
T KOG0612|consen 212 GHIKLADFG 220 (1317)
T ss_pred CcEeeccch
Confidence 334444443
No 81
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.78 E-value=0.0008 Score=77.88 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994 842 NNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872 (932)
Q Consensus 842 ~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l 872 (932)
..|...|++++..+-++-.....|...+.+|
T Consensus 410 ~aLq~amekLq~~f~~~~~e~adl~e~~e~l 440 (617)
T PF15070_consen 410 QALQEAMEKLQSRFMDLMEEKADLKERVEKL 440 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455556666666665555555555555554
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.73 E-value=0.00056 Score=87.01 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHH
Q psy16994 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518 (932)
Q Consensus 487 ~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~ 518 (932)
......+...+..+..+...+..+...+..++
T Consensus 296 ~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLE 327 (1486)
T PRK04863 296 YTSRRQLAAEQYRLVEMARELAELNEAESDLE 327 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 83
>KOG0995|consensus
Probab=98.71 E-value=0.0011 Score=72.98 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=8.5
Q ss_pred HHHHHHHhHhhHHHHHHHHH
Q psy16994 503 LSEEHEDMSGKLKELTRENR 522 (932)
Q Consensus 503 l~~~l~~~~~~l~~l~~~~~ 522 (932)
+-.+++.++.....+...+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 84
>KOG0247|consensus
Probab=98.70 E-value=3.6e-09 Score=117.08 Aligned_cols=119 Identities=20% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCCCCCCcccchhHHHhhcCCCCCCCCCCccCCccccccccCchhhcccccccccccccCCCcccccCCCCceEEE---
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEV--- 80 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~--- 80 (932)
+|++..+||+|||||||||||+++.++ .+.|+|...+.+.....+++.... + |.-++..... .....+-..
T Consensus 133 ~G~~~~~GIlPR~Ld~iF~siq~~~~~-k~~~kp~~s~~~e~~~~~~alL~l--k--r~~~~nd~~~-ts~~~~~~~~e~ 206 (809)
T KOG0247|consen 133 TGTPDRPGILPRALDVIFNSIQGRQAK-KPVFKPLRSNLFEIKAEEDALLQL--K--REAMLNDRKS-TSKAHRQSTPEY 206 (809)
T ss_pred ecCCCCCCchHHHHHHHHHHhhceecc-CceeccccchHHHHHHHHHHHHhh--h--hhhccccccC-cchhhccccHHH
Confidence 566999999999999999999999875 578999988777666555554310 1 1112211110 000000000
Q ss_pred eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHh-cCCCCce
Q psy16994 81 LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERY-LNGEDAL 139 (932)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~-~~g~~~~ 139 (932)
.+.-++.-.|.. ...=|.+|..++|+.+||++.++||++.+ +.|.-..
T Consensus 207 ~e~~~~~e~~~~-----------~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~ 255 (809)
T KOG0247|consen 207 AEHIHVIEQPAL-----------ELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQK 255 (809)
T ss_pred Hhhcchhccccc-----------ccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhh
Confidence 000000000000 01237899999999999999999999987 4554333
No 85
>KOG0994|consensus
Probab=98.68 E-value=0.00056 Score=79.74 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16994 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQ 853 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~ 853 (932)
.|..+..+|-.+.......+++|+......+..+....++|..++.
T Consensus 1693 ~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~ 1738 (1758)
T KOG0994|consen 1693 QLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEK 1738 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 3333333443333333333444443333333333333333333333
No 86
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.67 E-value=0.0015 Score=72.80 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q psy16994 380 ETIRLLEARLA 390 (932)
Q Consensus 380 el~~~~e~~l~ 390 (932)
+.+..+-.+|+
T Consensus 74 e~ms~LySKL~ 84 (786)
T PF05483_consen 74 EPMSRLYSKLY 84 (786)
T ss_pred HHHHHHHHHHH
Confidence 44445555555
No 87
>KOG0995|consensus
Probab=98.66 E-value=0.0015 Score=71.91 Aligned_cols=87 Identities=28% Similarity=0.432 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL 564 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~ 564 (932)
+++.++....++...+. ++......++.++.....++.++++++.-+.++......+. ..+..+..+
T Consensus 236 ~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~---------~~l~~l~~E 302 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHME---------KKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHH---------HHHHHHHHH
Confidence 44455554444444444 22233334445555555555666666555555555555555 455555554
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16994 565 LDEAKEEFKEQTTEIEQLRS 584 (932)
Q Consensus 565 l~~~~~~l~~l~~~i~~l~~ 584 (932)
++.-..+++.++.+...|+.
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.62 E-value=0.0031 Score=73.35 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994 810 EDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857 (932)
Q Consensus 810 ~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~ 857 (932)
.+.+..|+.++........+.+..+...+..+..+-.+|..+.-..=.
T Consensus 418 qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 418 QERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666666666555443
No 89
>KOG1029|consensus
Probab=98.60 E-value=0.00025 Score=79.30 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHhccccccc
Q psy16994 306 YAEETVQVLKISSVARDLLTVA 327 (932)
Q Consensus 306 ~~~et~~~l~~~~~~~~i~~~~ 327 (932)
.++|-+-.+-++..|+.=..-|
T Consensus 247 ~~dEfilam~liema~sGq~lP 268 (1118)
T KOG1029|consen 247 SADEFILAMHLIEMAKSGQPLP 268 (1118)
T ss_pred cHHHHHHHHHHHHHHhcCCCCC
Confidence 3566666666666676644444
No 90
>KOG4673|consensus
Probab=98.60 E-value=0.0023 Score=70.92 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKL 514 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l 514 (932)
.+..+++.+..+-.+.+.+..++..++.++
T Consensus 410 Rva~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 410 RVATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555555555555555555555555444444
No 91
>KOG1029|consensus
Probab=98.48 E-value=0.0031 Score=70.92 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=4.0
Q ss_pred HHHhhcCC
Q psy16994 18 NILFNSLG 25 (932)
Q Consensus 18 dviFnSi~ 25 (932)
|--|.++.
T Consensus 19 ~~qF~~Lk 26 (1118)
T KOG1029|consen 19 DAQFGQLK 26 (1118)
T ss_pred HHHHhccC
Confidence 44555554
No 92
>KOG0018|consensus
Probab=98.46 E-value=0.0085 Score=70.65 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=29.6
Q ss_pred hcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhccccccc
Q psy16994 286 SLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVA 327 (932)
Q Consensus 286 ~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~ 327 (932)
+.+|.+ ...||-+-.-+...|...|..+.+--.||++.++.
T Consensus 91 ~I~~G~-seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQ 131 (1141)
T KOG0018|consen 91 AINGGT-SEYMIDNEIVTREEYLEELEKINILVKARNFLVFQ 131 (1141)
T ss_pred hhcCCc-eeEEEcceeccHHHHHHHHhhcceeeeeeeEEEec
Confidence 344333 67788777777788888888888888888776553
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.42 E-value=0.00039 Score=81.65 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753 (932)
Q Consensus 690 ~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~ 753 (932)
.+...+..++++-..|+..+..-..--.+|=..+-+.+.+++-++..+...+.+|.+++.++.+
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333222222333334444444444444444444444444444433
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.41 E-value=0.01 Score=69.33 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=7.2
Q ss_pred HHHHHHHHhccchhHHHHH
Q psy16994 850 KSQQQQQQQRSPLKGLENQ 868 (932)
Q Consensus 850 ~~~~~~~~~~~~l~~le~~ 868 (932)
.+...+..+...+..|...
T Consensus 469 ~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 469 EVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 95
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.41 E-value=0.0002 Score=84.96 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.4
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
+..+-+|++|+|||.
T Consensus 28 g~~~i~G~NG~GKSt 42 (562)
T PHA02562 28 KKTLITGKNGAGKST 42 (562)
T ss_pred CEEEEECCCCCCHHH
Confidence 355568999999975
No 96
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.37 E-value=0.024 Score=71.58 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.1
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
.+.+.-+|+||||||.
T Consensus 30 ~~l~~I~G~tGaGKSt 45 (1047)
T PRK10246 30 NGLFAITGPTGAGKTT 45 (1047)
T ss_pred CCEEEEECCCCCCHHH
Confidence 4566778999999986
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.36 E-value=0.00082 Score=79.06 Aligned_cols=59 Identities=7% Similarity=0.111 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767 (932)
Q Consensus 709 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~ 767 (932)
+..++++-..|+..|..-..-..+|=..+.+...++..++..+..-..+|..|+.++.+
T Consensus 596 L~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 596 LSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333443333333333344444444444444444444444444444444444
No 98
>KOG0946|consensus
Probab=98.36 E-value=0.0013 Score=74.63 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=3.8
Q ss_pred cccchhHHHh
Q psy16994 12 IIPRTLNILF 21 (932)
Q Consensus 12 i~pr~ldviF 21 (932)
|+--.||.+.
T Consensus 79 ~ik~~LdTl~ 88 (970)
T KOG0946|consen 79 IIKYALDTLL 88 (970)
T ss_pred HHHHHHHHHH
Confidence 3333344333
No 99
>KOG0018|consensus
Probab=98.34 E-value=0.016 Score=68.39 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=8.1
Q ss_pred cccccCCCcE
Q psy16994 143 FGTTNSGKTF 152 (932)
Q Consensus 143 ~G~tgsGKt~ 152 (932)
.||.|||||-
T Consensus 31 IGPNGSGKSN 40 (1141)
T KOG0018|consen 31 IGPNGSGKSN 40 (1141)
T ss_pred eCCCCCchHH
Confidence 3999999965
No 100
>KOG0963|consensus
Probab=98.33 E-value=0.011 Score=65.93 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q psy16994 824 HNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873 (932)
Q Consensus 824 ~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~ 873 (932)
..+...|......+..++..+....+...........-+..++.-+.+.+
T Consensus 389 q~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 389 QNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred hHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcc
Confidence 33344444555555556666666666655555544444455555555543
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.32 E-value=0.00025 Score=84.16 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q psy16994 488 NLKQELSELEAKYKSLSEEHE 508 (932)
Q Consensus 488 ~l~~~l~~l~~~l~~l~~~l~ 508 (932)
.++.++..+..++..+..++.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333
No 102
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.30 E-value=0.0057 Score=63.41 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.2
Q ss_pred hhhccCCCcccccccccccccccccc
Q psy16994 900 KRQLKKPSTHLNSTAGLAENVNLITP 925 (932)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (932)
++....| .+.|++..++-+|+-|.
T Consensus 460 R~qad~P--~e~~aiAaedt~~~GPl 483 (499)
T COG4372 460 RSQADTP--SERSAIAAEDTVGPGPL 483 (499)
T ss_pred HHhcCCc--ccccCCCCCCCcCCCch
Confidence 3344444 34445555554444443
No 103
>KOG0946|consensus
Probab=98.28 E-value=0.001 Score=75.42 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=16.0
Q ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 798 SAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKL 834 (932)
Q Consensus 798 ~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l 834 (932)
++.....+...+.-.+.+....+..+.+.+.+|....
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 3333344444444444444444444444444444433
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.18 E-value=0.0067 Score=57.59 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=12.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVA 536 (932)
Q Consensus 503 l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~ 536 (932)
|..+...++..+......-..+..++..+...+.
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.09 E-value=0.021 Score=65.99 Aligned_cols=16 Identities=19% Similarity=0.165 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhc
Q psy16994 246 SSLHVLARCFNVLREN 261 (932)
Q Consensus 246 ~sl~~l~~~i~~l~~~ 261 (932)
.+...+..+...+...
T Consensus 127 ~~~~l~~~i~~~i~~~ 142 (594)
T PF05667_consen 127 KSALLQRSIAQAIREQ 142 (594)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444555666666553
No 106
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.03 E-value=2.1e-06 Score=103.65 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994 839 EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872 (932)
Q Consensus 839 ~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l 872 (932)
+.+..|..++..++.....+...+..|+.++.++
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555666666553
No 107
>KOG4593|consensus
Probab=98.01 E-value=0.051 Score=61.57 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16994 840 MINNLKAQMEKSQQQQQ 856 (932)
Q Consensus 840 ~~~~L~~~l~~~~~~~~ 856 (932)
.+..|+.++.......+
T Consensus 601 ev~qlk~ev~s~ekr~~ 617 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQ 617 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445544444444333
No 108
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.99 E-value=0.037 Score=59.14 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 513 KLKELTRENRDLVTKNKELEGKVAQLSRR 541 (932)
Q Consensus 513 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~ 541 (932)
.++.++.....+..+...++.-...++.+
T Consensus 296 ~i~~l~ek~r~l~~D~nk~~~~~~~mk~K 324 (622)
T COG5185 296 KIKTLREKWRALKSDSNKYENYVNAMKQK 324 (622)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.97 E-value=0.011 Score=68.18 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=4.2
Q ss_pred CHHHHHHHH
Q psy16994 164 SCEEAYRVL 172 (932)
Q Consensus 164 s~~~~~~~l 172 (932)
+..++..+|
T Consensus 93 ~e~~~R~ll 101 (594)
T PF05667_consen 93 NEKDLRRLL 101 (594)
T ss_pred ChHHHHHHH
Confidence 344555444
No 110
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.86 E-value=9.1e-06 Score=98.14 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 809 LEDQVNSLKAELEQRHNVVRDLQLKLL 835 (932)
Q Consensus 809 l~~e~~~l~~el~~~~~~~~~l~~~l~ 835 (932)
|..++..|..++..+...+..|..++.
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 111
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.86 E-value=3.2e-06 Score=101.75 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy16994 831 QLKLLQKGEMINNLKAQMEK 850 (932)
Q Consensus 831 ~~~l~~~~~~~~~L~~~l~~ 850 (932)
...+......|..|+.+++.
T Consensus 628 ~~ql~e~~~~i~~lE~~~e~ 647 (713)
T PF05622_consen 628 KKQLQEKDRRIESLEKELEK 647 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444433
No 112
>KOG0978|consensus
Probab=97.84 E-value=0.11 Score=59.98 Aligned_cols=12 Identities=17% Similarity=0.147 Sum_probs=5.2
Q ss_pred hhhhccCCCccc
Q psy16994 899 KKRQLKKPSTHL 910 (932)
Q Consensus 899 ~~~~~~~~~~~~ 910 (932)
.|+..-..+.|.
T Consensus 653 ~Kd~vI~kC~H~ 664 (698)
T KOG0978|consen 653 WKDAVITKCGHV 664 (698)
T ss_pred hhhHHHHhcchH
Confidence 344444444443
No 113
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.045 Score=55.48 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL 740 (932)
Q Consensus 690 ~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l 740 (932)
....+...++..-..++..+..+..-..+++..+..|..+...+..-+..+
T Consensus 152 ~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~ 202 (265)
T COG3883 152 QQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL 202 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333444333333333333333
No 114
>KOG0980|consensus
Probab=97.83 E-value=0.1 Score=60.48 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~ 532 (932)
.+..+..++..+...+..+.. ..+..+...+..+..++.++...+
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~---ear~~~~q~~~ql~~le~~~~e~q 378 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKE---EARRRIEQYENQLLALEGELQEQQ 378 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555544443322 233344444444444444444333
No 115
>KOG0980|consensus
Probab=97.80 E-value=0.12 Score=60.07 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=10.1
Q ss_pred HHhhhHHHHHHHhHhhHHHHHHHH
Q psy16994 498 AKYKSLSEEHEDMSGKLKELTREN 521 (932)
Q Consensus 498 ~~l~~l~~~l~~~~~~l~~l~~~~ 521 (932)
..+..++..+..+.-++...+...
T Consensus 358 ~~~~q~~~ql~~le~~~~e~q~~~ 381 (980)
T KOG0980|consen 358 RRIEQYENQLLALEGELQEQQREA 381 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444444444433333
No 116
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.78 E-value=0.06 Score=54.80 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy16994 806 RKQLEDQVNSLKAE 819 (932)
Q Consensus 806 ~~~l~~e~~~l~~e 819 (932)
++.|..++..|+..
T Consensus 280 NKeL~ne~n~LkEr 293 (305)
T PF14915_consen 280 NKELINECNHLKER 293 (305)
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444443
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.70 E-value=0.12 Score=62.18 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=11.5
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
+++-+|+.|+|||.
T Consensus 30 ~~~i~G~Ng~GKtt 43 (650)
T TIGR03185 30 IILIGGLNGAGKTT 43 (650)
T ss_pred EEEEECCCCCCHHH
Confidence 55678999999986
No 118
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.68 E-value=0.036 Score=54.40 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMS 511 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~ 511 (932)
+|..+..++.++...+..+..+..-++
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555444333
No 119
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.62 E-value=1.2e-05 Score=96.73 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=0.0
Q ss_pred HHHHHH
Q psy16994 864 GLENQM 869 (932)
Q Consensus 864 ~le~~l 869 (932)
.|+..|
T Consensus 580 ~Le~~L 585 (713)
T PF05622_consen 580 ELEEAL 585 (713)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 120
>KOG0962|consensus
Probab=97.58 E-value=0.41 Score=59.04 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=31.3
Q ss_pred HHHHhcCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy16994 795 LEASAATPSQYRKQLEDQVNSLK-----AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQ 856 (932)
Q Consensus 795 L~~~l~~~~~~~~~l~~e~~~l~-----~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~ 856 (932)
+..++.++..+...+..++.... .+...+......+......+.+....++.++.....++.
T Consensus 1013 l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444443333222 344444455555555555555666666666666666555
No 121
>KOG0978|consensus
Probab=97.55 E-value=0.3 Score=56.67 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=8.2
Q ss_pred CChHHHHHHHHHHHhh
Q psy16994 376 DDPYETIRLLEARLAE 391 (932)
Q Consensus 376 ~~~~el~~~~e~~l~~ 391 (932)
+..+++..+.++++.+
T Consensus 153 ~~iee~~~~~~~~~~e 168 (698)
T KOG0978|consen 153 DEIEELRELASTRMEE 168 (698)
T ss_pred cchhHHHHHHHHHHHH
Confidence 3344555555566553
No 122
>KOG0963|consensus
Probab=97.49 E-value=0.29 Score=55.11 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy16994 778 AVQDELAE 785 (932)
Q Consensus 778 ~~~~el~~ 785 (932)
++..++.-
T Consensus 348 eIK~ELsi 355 (629)
T KOG0963|consen 348 EIKKELSI 355 (629)
T ss_pred HHHHHHHH
Confidence 33334333
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.24 Score=53.25 Aligned_cols=12 Identities=17% Similarity=0.578 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy16994 775 RLKAVQDELAEM 786 (932)
Q Consensus 775 ~~~~~~~el~~l 786 (932)
+++.+++++.++
T Consensus 534 E~eklE~el~~l 545 (622)
T COG5185 534 EIEKLEKELNDL 545 (622)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 124
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.37 E-value=0.49 Score=54.86 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 809 LEDQVNSLKAELEQRH--NVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 809 l~~e~~~l~~el~~~~--~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
-..++..+...+.... ..-.+++..+..+.+.+-.=...++.+..++..+.-.+..++.++..
T Consensus 367 ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 367 KESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 3444444444443322 22346666777666666666777778877777777788888877763
No 125
>PF13514 AAA_27: AAA domain
Probab=97.35 E-value=0.99 Score=58.03 Aligned_cols=9 Identities=56% Similarity=0.689 Sum_probs=4.9
Q ss_pred CCceeeecc
Q psy16994 136 EDALLFSFG 144 (932)
Q Consensus 136 ~~~~i~~~G 144 (932)
....+|+-|
T Consensus 114 lg~~Lf~ag 122 (1111)
T PF13514_consen 114 LGQLLFSAG 122 (1111)
T ss_pred HHHHHHHhc
Confidence 345566655
No 126
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.44 Score=52.64 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=9.1
Q ss_pred hcCchHHHHHHHHHHHHHHHHHH
Q psy16994 799 AATPSQYRKQLEDQVNSLKAELE 821 (932)
Q Consensus 799 l~~~~~~~~~l~~e~~~l~~el~ 821 (932)
..........+..++.+..-.++
T Consensus 449 ~~~~~~~i~~l~~eLse~pinm~ 471 (570)
T COG4477 449 FFTAGHEIQDLMKELSEVPINME 471 (570)
T ss_pred HHhhhhHHHHHHHHHhhcCCcHH
Confidence 33334444444444443333333
No 127
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.22 E-value=1.1 Score=58.38 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=15.2
Q ss_pred CCccCCCC--chHHhhhhhcCCCC
Q psy16994 270 KLIPFRDS--KLTQIFQRSLSGLS 291 (932)
Q Consensus 270 ~~vp~r~s--~LT~ll~~~l~g~~ 291 (932)
+.++|+-. .++.+|++||.+.+
T Consensus 195 P~Ls~~~~~~~l~~~l~~~l~~l~ 218 (1353)
T TIGR02680 195 PQLSKKPDEGVLSDALTEALPPLD 218 (1353)
T ss_pred CCCCCCCChHHHHHHHHHhCCCCC
Confidence 55666654 47788888887765
No 128
>KOG1853|consensus
Probab=97.20 E-value=0.25 Score=48.55 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q psy16994 828 RDLQLKLLQKGEMINNLKAQMEKS 851 (932)
Q Consensus 828 ~~l~~~l~~~~~~~~~L~~~l~~~ 851 (932)
.|+..++.+..+.++-|+.+|.+.
T Consensus 136 eDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444444444444333
No 129
>KOG0962|consensus
Probab=97.20 E-value=1.1 Score=55.49 Aligned_cols=13 Identities=38% Similarity=0.716 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy16994 774 DRLKAVQDELAEM 786 (932)
Q Consensus 774 ~~~~~~~~el~~l 786 (932)
.++..+..++..+
T Consensus 1015 ~q~~e~~re~~~l 1027 (1294)
T KOG0962|consen 1015 RKLKELERELSEL 1027 (1294)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.17 E-value=0.72 Score=52.78 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~ 530 (932)
.+..+......++..+..+.........++.....+.+.+...+.+
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk 208 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK 208 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333333333333333333333
No 131
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.16 E-value=0.37 Score=49.31 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=5.1
Q ss_pred CchHHHHHHHHHH
Q psy16994 801 TPSQYRKQLEDQV 813 (932)
Q Consensus 801 ~~~~~~~~l~~e~ 813 (932)
++..++..|.+.+
T Consensus 282 eL~ne~n~LkEr~ 294 (305)
T PF14915_consen 282 ELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.09 E-value=0.61 Score=50.58 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q psy16994 486 IQNLKQELSELEAKYKSLSE 505 (932)
Q Consensus 486 i~~l~~~l~~l~~~l~~l~~ 505 (932)
+.+|...+.+.+..+.+++.
T Consensus 77 c~EL~~~I~egr~~~~~~E~ 96 (325)
T PF08317_consen 77 CRELKKYISEGRQIFEEIEE 96 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 133
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.04 E-value=0.68 Score=50.25 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16994 485 KIQNLKQELSELEAKY 500 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l 500 (932)
.|.+....+.+++.++
T Consensus 83 ~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 83 YISEGRQIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 134
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.94 E-value=2.2 Score=54.48 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
++++-+|+||||||.
T Consensus 27 gl~~I~G~nGaGKST 41 (1042)
T TIGR00618 27 PIFLICGKTGAGKTT 41 (1042)
T ss_pred CeEEEECCCCCCHHH
Confidence 566678999999986
No 135
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.89 E-value=0.53 Score=46.59 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 736 QVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767 (932)
Q Consensus 736 ~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~ 767 (932)
++..++..+...+.++..+...+..-..+..+
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~E 193 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQKTKENEE 193 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444454444444444444444
No 136
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.85 E-value=0.83 Score=48.17 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16994 561 LKSLLDEAKEEFKEQT 576 (932)
Q Consensus 561 l~~~l~~~~~~l~~l~ 576 (932)
+..+++..+.+.+.+.
T Consensus 14 L~~eLe~cq~ErDqyK 29 (319)
T PF09789_consen 14 LSQELEKCQSERDQYK 29 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 137
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.83 E-value=1.5 Score=50.89 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 838 GEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 838 ~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
+..+..|..-+-..+..+..+......|.-+|.+
T Consensus 391 E~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlEr 424 (511)
T PF09787_consen 391 ESRLTQLTESLIQKQTQLESLGSEKNALRLQLER 424 (511)
T ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhccccHHH
Confidence 3333333333333334443333333333334444
No 138
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.81 E-value=1.9 Score=51.67 Aligned_cols=10 Identities=50% Similarity=0.584 Sum_probs=4.8
Q ss_pred cchhHHHHHH
Q psy16994 860 SPLKGLENQM 869 (932)
Q Consensus 860 ~~l~~le~~l 869 (932)
.+|..++.++
T Consensus 300 ~kL~~~e~ql 309 (769)
T PF05911_consen 300 SKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 139
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=96.68 E-value=0.00023 Score=82.52 Aligned_cols=146 Identities=27% Similarity=0.348 Sum_probs=106.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec---------------------------
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------- 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------- 156 (932)
.|.||.+|.+......++.. ...+++..++| +++||++++|+++++.-
T Consensus 354 ~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 428 (568)
T COG5059 354 EIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKY 428 (568)
T ss_pred HHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 67888888888777777765 55666776777 99999999999998754
Q ss_pred ---------------------------------------ceEEEecCHHHHHH-HHHhhhhccccccccCccCCCCCccE
Q psy16994 157 ---------------------------------------LTYVNVHSCEEAYR-VLRFGKSHLSVAPTELNHRSSRSHCV 196 (932)
Q Consensus 157 ---------------------------------------l~~~~v~s~~~~~~-~l~~g~~~r~~~~t~~n~~ssrsh~i 196 (932)
.+............ ........+..+.+..|.+++++|++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 508 (568)
T COG5059 429 KSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSSRSHSK 508 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhccchhhcccchhhhhcccchh
Confidence 00111111111111 11134566777889999999999999
Q ss_pred EEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16994 197 FSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLR 259 (932)
Q Consensus 197 ~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~ 259 (932)
|+.+............ +..|||||+||. .+...|.++++...+|++|..+|.++.++.
T Consensus 509 ~~~~~~~~~~~~~~~~----~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 509 FRDHLNGSNSSTKELS----LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhcccchhhhhHHHH----hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 9988866533211111 799999999999 899999999999999999999999987753
No 140
>KOG1899|consensus
Probab=96.55 E-value=0.73 Score=51.47 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994 842 NNLKAQMEKSQQQQQQQRSPLKGLENQM 869 (932)
Q Consensus 842 ~~L~~~l~~~~~~~~~~~~~l~~le~~l 869 (932)
+.|+..|+.+-....+....+.++..-+
T Consensus 277 ~~lk~a~eslm~ane~kdr~ie~lr~~l 304 (861)
T KOG1899|consen 277 NTLKNALESLMRANEQKDRFIESLRNYL 304 (861)
T ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHh
Confidence 3444444444444444444444444333
No 141
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.33 E-value=0.6 Score=46.78 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q psy16994 810 EDQVNSLKAELE 821 (932)
Q Consensus 810 ~~e~~~l~~el~ 821 (932)
...|++|+..|.
T Consensus 161 ~sk~e~L~ekyn 172 (307)
T PF10481_consen 161 DSKYEELQEKYN 172 (307)
T ss_pred hhhHHHHHHHHH
Confidence 344555555543
No 142
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.30 E-value=2.1 Score=50.45 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.3
Q ss_pred eecccccCCCcEE
Q psy16994 141 FSFGTTNSGKTFT 153 (932)
Q Consensus 141 ~~~G~tgsGKt~t 153 (932)
+-+|+||||||..
T Consensus 26 vitG~nGaGKS~l 38 (563)
T TIGR00634 26 VLTGETGAGKSMI 38 (563)
T ss_pred EEECCCCCCHHHH
Confidence 4579999999763
No 143
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.25 E-value=3.2 Score=47.80 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy16994 842 NNLKAQMEKSQ 852 (932)
Q Consensus 842 ~~L~~~l~~~~ 852 (932)
..+..++...+
T Consensus 559 ~~lR~EL~~QQ 569 (739)
T PF07111_consen 559 AELRRELTQQQ 569 (739)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 144
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.22 E-value=1.3 Score=44.47 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy16994 822 QRHNVVRDLQLKL 834 (932)
Q Consensus 822 ~~~~~~~~l~~~l 834 (932)
.+...+.+|+..|
T Consensus 289 EL~ski~ELE~rL 301 (307)
T PF10481_consen 289 ELRSKINELELRL 301 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 145
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.10 E-value=7.8 Score=50.77 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=11.7
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
.++-.|+.|||||.+|
T Consensus 26 ~~~~~G~NGsGKS~~l 41 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVL 41 (1353)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4455699999998754
No 146
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.08 E-value=1 Score=55.50 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy16994 247 SLHVLARCFNVL 258 (932)
Q Consensus 247 sl~~l~~~i~~l 258 (932)
|=..+.+||..|
T Consensus 83 Sr~v~~~VV~~L 94 (754)
T TIGR01005 83 SNEILKQVVDKL 94 (754)
T ss_pred cHHHHHHHHHHc
Confidence 333344444433
No 147
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.95 E-value=1.7 Score=50.65 Aligned_cols=16 Identities=13% Similarity=0.476 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16994 531 LEGKVAQLSRRVEEME 546 (932)
Q Consensus 531 l~~~~~~l~~~~~~l~ 546 (932)
++.++..++.++...+
T Consensus 166 l~~ql~~~~~~L~~ae 181 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAE 181 (498)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444443333333
No 148
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.94 E-value=2.9 Score=48.72 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16994 723 IAELKTKCEELTQQVTKLEADC 744 (932)
Q Consensus 723 l~~l~~~~~~l~~~l~~l~~~l 744 (932)
+..++.+....+.....+..++
T Consensus 357 l~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 149
>KOG0979|consensus
Probab=95.88 E-value=5.9 Score=47.62 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=24.9
Q ss_pred eecccccCCCcEEEe------cceEEEecCHHHHHHHHHhhh
Q psy16994 141 FSFGTTNSGKTFTIQ------DLTYVNVHSCEEAYRVLRFGK 176 (932)
Q Consensus 141 ~~~G~tgsGKt~t~~------Gl~~~~v~s~~~~~~~l~~g~ 176 (932)
|-.||.|||||..+- |.+--.+.-+..+-.++..|.
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~ 87 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGE 87 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCC
Confidence 456999999998643 344445666677777887763
No 150
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.83 E-value=4.8 Score=47.51 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy16994 568 AKEEFKEQTTEI 579 (932)
Q Consensus 568 ~~~~l~~l~~~i 579 (932)
...+++.++.++
T Consensus 187 ~~~eld~L~~ql 198 (563)
T TIGR00634 187 LAQRLDFLQFQL 198 (563)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 151
>PF13514 AAA_27: AAA domain
Probab=95.80 E-value=9.3 Score=49.30 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.4
Q ss_pred ecceecC
Q psy16994 106 RFSNIYG 112 (932)
Q Consensus 106 ~fd~v~~ 112 (932)
.|..+|+
T Consensus 88 ~f~~iF~ 94 (1111)
T PF13514_consen 88 TFEAIFS 94 (1111)
T ss_pred HHHHHHc
Confidence 3455554
No 152
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.64 E-value=3.4 Score=43.12 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy16994 649 KENLISQL 656 (932)
Q Consensus 649 l~~~~~~l 656 (932)
+...+..+
T Consensus 140 L~k~i~~L 147 (310)
T PF09755_consen 140 LQKKIERL 147 (310)
T ss_pred HHHHHHHH
Confidence 33333333
No 153
>KOG2129|consensus
Probab=95.62 E-value=3.9 Score=43.62 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=8.4
Q ss_pred hccCCCcccccccccccccc
Q psy16994 902 QLKKPSTHLNSTAGLAENVN 921 (932)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~ 921 (932)
...+|..+.+||.+.+-+||
T Consensus 361 s~~sPvs~t~s~~s~~~SPg 380 (552)
T KOG2129|consen 361 SANSPVSNTNSPASSTSSPG 380 (552)
T ss_pred ccCCCcccCCCcccccCCCc
Confidence 33444444444444333333
No 154
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.48 E-value=2 Score=53.01 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16994 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEME 546 (932)
Q Consensus 516 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 546 (932)
.......-+..++..++.++...+.++...+
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555554444
No 155
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.46 E-value=5.6 Score=44.39 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.4
Q ss_pred cccccC
Q psy16994 323 LLTVAK 328 (932)
Q Consensus 323 i~~~~~ 328 (932)
+.+.|+
T Consensus 40 l~~lPv 45 (570)
T COG4477 40 LLNLPV 45 (570)
T ss_pred HHcCCc
Confidence 334443
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.33 E-value=3.4 Score=41.14 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 520 ENRDLVTKNKELEGKVAQLSRRV 542 (932)
Q Consensus 520 ~~~~l~~~~~~l~~~~~~l~~~~ 542 (932)
+...+...+..+..++..+...+
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.32 E-value=4.4 Score=42.35 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy16994 805 YRKQLEDQ 812 (932)
Q Consensus 805 ~~~~l~~e 812 (932)
++..|+..
T Consensus 269 EN~rLqr~ 276 (310)
T PF09755_consen 269 ENRRLQRK 276 (310)
T ss_pred HHHHHHHH
Confidence 33333333
No 158
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.19 E-value=3.4 Score=40.36 Aligned_cols=16 Identities=44% Similarity=0.488 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16994 486 IQNLKQELSELEAKYK 501 (932)
Q Consensus 486 i~~l~~~l~~l~~~l~ 501 (932)
|.-|..++.+...++.
T Consensus 12 IsLLKqQLke~q~E~~ 27 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVN 27 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334433333333
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.17 E-value=1.9 Score=51.65 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=4.0
Q ss_pred CCCcEEEec
Q psy16994 148 SGKTFTIQD 156 (932)
Q Consensus 148 sGKt~t~~G 156 (932)
.|-+|.+.+
T Consensus 249 ng~v~~~~~ 257 (717)
T PF10168_consen 249 NGDVYLLYT 257 (717)
T ss_pred CCCEEEEEE
Confidence 444444433
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.11 E-value=0.44 Score=47.38 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738 (932)
Q Consensus 705 le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~ 738 (932)
+...+..+..++..+...+......+..+.+++.
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 161
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.86 E-value=17 Score=46.64 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.3
Q ss_pred EEEEEE
Q psy16994 198 SIKLVK 203 (932)
Q Consensus 198 ~i~v~~ 203 (932)
.|++..
T Consensus 5 ~L~l~n 10 (1042)
T TIGR00618 5 RLTLKN 10 (1042)
T ss_pred EEEEeC
Confidence 344433
No 162
>KOG0982|consensus
Probab=94.75 E-value=7.3 Score=41.96 Aligned_cols=6 Identities=17% Similarity=0.695 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy16994 722 DIAELK 727 (932)
Q Consensus 722 ~l~~l~ 727 (932)
+++.++
T Consensus 411 evkrLr 416 (502)
T KOG0982|consen 411 EVKRLR 416 (502)
T ss_pred HHHHhc
Confidence 333333
No 163
>KOG4809|consensus
Probab=94.39 E-value=10 Score=42.19 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=18.2
Q ss_pred ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 162 v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
+.+.......+.....++.+.-.-. .+.+||.+|.|..
T Consensus 122 i~dlQ~q~k~lqrE~~nlkvelelk--eekLsssMnsIKT 159 (654)
T KOG4809|consen 122 LADLQRQAKLLQREEHNLKVELELK--EEKLSSSMNSIKT 159 (654)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHH--HHHhcCccccccc
Confidence 3444444444444444444432221 2345677777655
No 164
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.34 E-value=1.1 Score=48.14 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER 759 (932)
Q Consensus 691 l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~ 759 (932)
++.+...+..++..++.+...+..++..++.+...+.......-.....+..++.....+.+.+..++.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333333
No 165
>KOG1850|consensus
Probab=94.26 E-value=7.6 Score=40.07 Aligned_cols=78 Identities=10% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872 (932)
Q Consensus 795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l 872 (932)
.+.+++.+...+..++.+---.+...+.....+-++.....-....+..+...|..++.-.+.+.....++...+..+
T Consensus 248 fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~ 325 (391)
T KOG1850|consen 248 FKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDL 325 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333344444444444444444444444444444444444444444455555555555555554444444444444443
No 166
>KOG4360|consensus
Probab=94.02 E-value=5.2 Score=44.12 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16994 565 LDEAKEEFKEQTTEIEQLRSEV 586 (932)
Q Consensus 565 l~~~~~~l~~l~~~i~~l~~~l 586 (932)
.+.+..++..+.+++..+..+.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHH
Confidence 3344444444444444444433
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.97 E-value=1.2 Score=47.87 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 728 TKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760 (932)
Q Consensus 728 ~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~ 760 (932)
.....+..++.....+...+..++.....++..
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444333
No 168
>KOG0804|consensus
Probab=93.82 E-value=4.6 Score=43.85 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=28.9
Q ss_pred ccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCC-CCCccEEEEEEEEe
Q psy16994 146 TNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRS-SRSHCVFSIKLVKV 204 (932)
Q Consensus 146 tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~s-srsh~i~~i~v~~~ 204 (932)
.|.+--|++ -+...+..+|..++..-+ +..+|..- --.|.||...|.-.
T Consensus 110 d~~pnrymv----LIkFr~q~da~~Fy~efN------Gk~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 110 DGMPNRYMV----LIKFRDQADADTFYEEFN------GKQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred cCCCceEEE----EEEeccchhHHHHHHHcC------CCcCCCCCccceeEEEEEEEEEE
Confidence 778888855 466777778877775421 12222221 13588887766554
No 169
>KOG0979|consensus
Probab=93.80 E-value=20 Score=43.34 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=3.4
Q ss_pred EEEEEE
Q psy16994 215 SSFDIC 220 (932)
Q Consensus 215 s~l~~v 220 (932)
+.|+||
T Consensus 42 psLNmI 47 (1072)
T KOG0979|consen 42 PSLNMI 47 (1072)
T ss_pred CceeeE
Confidence 456655
No 170
>KOG0804|consensus
Probab=93.78 E-value=5.2 Score=43.45 Aligned_cols=8 Identities=13% Similarity=0.222 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy16994 165 CEEAYRVL 172 (932)
Q Consensus 165 ~~~~~~~l 172 (932)
..|++.++
T Consensus 88 ~~Dll~F~ 95 (493)
T KOG0804|consen 88 SHDLLRFC 95 (493)
T ss_pred HHHHHHHH
Confidence 34444444
No 171
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.69 E-value=6.5 Score=37.27 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy16994 776 LKAVQDELAEM 786 (932)
Q Consensus 776 ~~~~~~el~~l 786 (932)
+...+.++..+
T Consensus 135 ~rkke~E~~kL 145 (151)
T PF11559_consen 135 LRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 172
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.62 E-value=0.033 Score=56.69 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=39.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec----------ceEEEecCHHHHHHHHH
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD----------LTYVNVHSCEEAYRVLR 173 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------l~~~~v~s~~~~~~~l~ 173 (932)
.|+||..+.. .++...|.. +..+... .......+|-||++|+||||.+.+ -..|..-+++++..-+.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~-~~~ia~~-~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAA-AKAIAEN-PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHH-HHHHHHS-TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHH-HHHHHhc-CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 5999986653 444555543 4444444 222233578899999999997665 12345555666655444
Q ss_pred hh
Q psy16994 174 FG 175 (932)
Q Consensus 174 ~g 175 (932)
.+
T Consensus 81 ~~ 82 (219)
T PF00308_consen 81 DA 82 (219)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 173
>PRK10869 recombination and repair protein; Provisional
Probab=93.25 E-value=21 Score=41.88 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=8.7
Q ss_pred ecccccCCCcE
Q psy16994 142 SFGTTNSGKTF 152 (932)
Q Consensus 142 ~~G~tgsGKt~ 152 (932)
-.|+||||||-
T Consensus 27 itGetGaGKS~ 37 (553)
T PRK10869 27 ITGETGAGKSI 37 (553)
T ss_pred EECCCCCChHH
Confidence 46999999965
No 174
>KOG0992|consensus
Probab=93.11 E-value=17 Score=40.24 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 841 INNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 841 ~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
+..++.++...+. .....|++|+.++..
T Consensus 387 leelk~~f~a~q~---K~a~tikeL~~El~~ 414 (613)
T KOG0992|consen 387 LEELKVQFTAKQE---KHAETIKELEIELEE 414 (613)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4444444444333 233467777777765
No 175
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.96 E-value=5.1 Score=43.73 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=5.4
Q ss_pred cHHHHHHHHHHH
Q psy16994 306 YAEETVQVLKIS 317 (932)
Q Consensus 306 ~~~et~~~l~~~ 317 (932)
+.+.|.+.+=..
T Consensus 68 DPn~~~~~Il~~ 79 (359)
T PF10498_consen 68 DPNATISNILDE 79 (359)
T ss_pred CHHHHHHHHHHH
Confidence 334555544333
No 176
>KOG2129|consensus
Probab=92.85 E-value=16 Score=39.28 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=9.6
Q ss_pred hcCchHHHHHHHHHHHHHHHHHH
Q psy16994 799 AATPSQYRKQLEDQVNSLKAELE 821 (932)
Q Consensus 799 l~~~~~~~~~l~~e~~~l~~el~ 821 (932)
+..+..+.....++...++..+.
T Consensus 280 ~~qy~~Ee~~~reen~rlQrkL~ 302 (552)
T KOG2129|consen 280 LMQYRAEEVDHREENERLQRKLI 302 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 177
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.84 E-value=0.09 Score=56.98 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhcCC----CCceeeecccccCCCcEEEe
Q psy16994 118 AELFQNIVHNMLERYLNG----EDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 118 ~~v~~~~~~~~v~~~~~g----~~~~i~~~G~tgsGKt~t~~ 155 (932)
...|.....-++.++... ..+.|.-.||||.|||+|+.
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 344444444444444433 36677778999999999853
No 178
>PRK12377 putative replication protein; Provisional
Probab=92.83 E-value=0.078 Score=54.73 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=46.6
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHhhh
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRFGK 176 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~g~ 176 (932)
.+||........+..++.. +..++..+..+. ..++-||++|+||||.+.+ -..|.+.++.+++..+..+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY 148 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHH
Confidence 4566655444556556654 566677666554 4678899999999997655 23356667778887776553
No 179
>KOG4677|consensus
Probab=92.62 E-value=18 Score=39.36 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994 826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA 870 (932)
Q Consensus 826 ~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~ 870 (932)
....+...+.++...+-.-...++.+-..++.+...+..|+..+.
T Consensus 425 s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 425 SVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred hHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 445555555666666666666777777777777777777777665
No 180
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.30 E-value=0.045 Score=56.19 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
+.|++..+.+-.++.|+.-|+||||||+||.
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 5677788888999999999999999999653
No 181
>PRK06893 DNA replication initiation factor; Validated
Probab=92.13 E-value=0.096 Score=53.83 Aligned_cols=47 Identities=13% Similarity=0.366 Sum_probs=30.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.++||..++.. +... +..+...+..+++..++-||++|+||||.+.+
T Consensus 12 ~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 12 DETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred cccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 47899888654 2221 22222333346777889999999999996544
No 182
>PF13166 AAA_13: AAA domain
Probab=92.03 E-value=37 Score=41.64 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=11.1
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
...-+-||..|||||.
T Consensus 16 ~~~n~IYG~NGsGKSt 31 (712)
T PF13166_consen 16 KKINLIYGRNGSGKST 31 (712)
T ss_pred CceEEEECCCCCCHHH
Confidence 3334568888899865
No 183
>PF13166 AAA_13: AAA domain
Probab=91.89 E-value=38 Score=41.51 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhc
Q psy16994 249 HVLARCFNVLREN 261 (932)
Q Consensus 249 ~~l~~~i~~l~~~ 261 (932)
++|.++|..+..+
T Consensus 30 Stlsr~l~~~~~~ 42 (712)
T PF13166_consen 30 STLSRILKSLCRG 42 (712)
T ss_pred HHHHHHHHHHhhc
Confidence 5677777777653
No 184
>KOG1850|consensus
Probab=91.24 E-value=20 Score=37.10 Aligned_cols=17 Identities=0% Similarity=0.372 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16994 770 KIYEDRLKAVQDELAEM 786 (932)
Q Consensus 770 ~~~~~~~~~~~~el~~l 786 (932)
..|..+++.+.+.+..+
T Consensus 246 ~~fK~E~ekmtKk~kkl 262 (391)
T KOG1850|consen 246 TKFKQEMEKMTKKIKKL 262 (391)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 185
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=91.23 E-value=26 Score=38.37 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16994 556 EEVKYLKSLLDEAKEEFKE 574 (932)
Q Consensus 556 ~~~~~l~~~l~~~~~~l~~ 574 (932)
..+..++.++...+..+..
T Consensus 15 ~~V~~m~~~L~~~~~~L~~ 33 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEE 33 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 186
>PRK06620 hypothetical protein; Validated
Probab=91.11 E-value=0.12 Score=52.31 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=30.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCC---ceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED---ALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~---~~i~~~G~tgsGKt~t~~ 155 (932)
.|+||..+. ..++...|..+ ..+... + |+| ..++-||++|+||||.+.
T Consensus 12 ~~tfd~Fvv-g~~N~~a~~~~-~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 12 KYHPDEFIV-SSSNDQAYNII-KNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCchhhEe-cccHHHHHHHH-HHHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 588888665 44445566553 333321 1 333 458999999999999554
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.89 E-value=0.12 Score=55.89 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHh
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRF 174 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~ 174 (932)
+..+++.+..+. ..|+-||++|+||||.+.+ -..|...++.+++..+..
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 556777766554 6688999999999997655 235666677777776654
No 188
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.77 E-value=0.1 Score=57.99 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
-...+..++...++.|+.-||||||||+||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34456677888999999999999999999876
No 189
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=90.38 E-value=0.84 Score=54.76 Aligned_cols=69 Identities=25% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE-----ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN-----VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV 202 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~-----v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~ 202 (932)
.|.|.||+.-|.+|||||.+..- |..+. ..+.++-..-....+..--.+.|..|..|||---++.|.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~ 166 (677)
T smart00242 89 DKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFD 166 (677)
T ss_pred cCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEEC
Confidence 68999999999999999986432 11111 12233322211222233345779999999998778777764
No 190
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=90.35 E-value=28 Score=37.16 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994 835 LQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA 870 (932)
Q Consensus 835 ~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~ 870 (932)
..+.+..+.|.++|++.+.+..++...+.--.+.|.
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455566677777777777777666555544444443
No 191
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.32 E-value=32 Score=37.75 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579 (932)
Q Consensus 534 ~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i 579 (932)
.+.+....+..++ .++...+-.+.....+.+.+-..+
T Consensus 9 KL~et~~~V~~m~---------~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 9 KLKETEEQVEEMQ---------EELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666 666666555555554444444333
No 192
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.19 E-value=0.31 Score=50.18 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=42.3
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHhh
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRFG 175 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~g 175 (932)
++||........+..++.. +..+++.+..|. ..++.+|++|+||||.+.+ -..+.+-++.+++..+...
T Consensus 69 ~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~ 145 (244)
T PRK07952 69 CSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT 145 (244)
T ss_pred CccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH
Confidence 5666644334455556554 445555554443 4688899999999997654 2244455677777666543
No 193
>PRK08116 hypothetical protein; Validated
Probab=90.16 E-value=0.19 Score=52.81 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=42.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcC--CCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHH
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLN--GEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLR 173 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~--g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~ 173 (932)
.++||... ....+...|.. +..++..+.. +.+..++-||++|+||||.+.. -..+.+.++.+++.-+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 46777644 45555555544 5666665543 3455689999999999997554 12345556666665554
No 194
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=89.90 E-value=0.22 Score=55.14 Aligned_cols=48 Identities=29% Similarity=0.489 Sum_probs=36.2
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|....-|.|..+|-. .+..+|+.+-+|...-+ ..|.|||||||||..
T Consensus 4 ~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~An 51 (663)
T COG0556 4 PFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMAN 51 (663)
T ss_pred ceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHH
Confidence 4777778888888754 46677777777765433 469999999999987
No 195
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.72 E-value=0.25 Score=54.31 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=41.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-----------ceEEEecCHHHHHHHH
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-----------LTYVNVHSCEEAYRVL 172 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-----------l~~~~v~s~~~~~~~l 172 (932)
.|+||.... ..++.-.|. +..-+.....+..-.||-||++|+||||.|.. ...+.+++..-+..++
T Consensus 83 ~ytFdnFv~-g~~N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v 159 (408)
T COG0593 83 KYTFDNFVV-GPSNRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFV 159 (408)
T ss_pred CCchhheee-CCchHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHH
Confidence 699988555 444444442 23333343444566788999999999998764 4556666554444444
Q ss_pred Hh
Q psy16994 173 RF 174 (932)
Q Consensus 173 ~~ 174 (932)
..
T Consensus 160 ~a 161 (408)
T COG0593 160 KA 161 (408)
T ss_pred HH
Confidence 43
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=23 Score=40.48 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=14.5
Q ss_pred hhhhhcCCCCCeeEEEEecCC
Q psy16994 282 IFQRSLSGLSSTVKMIVNVNA 302 (932)
Q Consensus 282 ll~~~l~g~~~~~~~i~~~~p 302 (932)
..+...||-+ ...|+|-..+
T Consensus 187 ~vr~~~gGi~-~a~F~VyA~r 206 (652)
T COG2433 187 EVRESYGGIS-RAEFTVYAPR 206 (652)
T ss_pred EEeeccCccc-eeEEEEEcCh
Confidence 3566788888 7888887655
No 197
>PRK10869 recombination and repair protein; Provisional
Probab=89.56 E-value=50 Score=38.88 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=20.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16994 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546 (932)
Q Consensus 505 ~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 546 (932)
..+..+-..+..+..++..+.........++.-++-+++++.
T Consensus 157 ~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555555555554444444
No 198
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=89.40 E-value=55 Score=39.20 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=7.4
Q ss_pred CCCceeeecccccC
Q psy16994 135 GEDALLFSFGTTNS 148 (932)
Q Consensus 135 g~~~~i~~~G~tgs 148 (932)
|+++-++.-|.+||
T Consensus 143 ~i~~~LL~sgt~G~ 156 (984)
T COG4717 143 GILGYLLFSGTSGS 156 (984)
T ss_pred hHHHHHHHhccCCC
Confidence 44555555555554
No 199
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.28 E-value=44 Score=37.85 Aligned_cols=14 Identities=21% Similarity=0.416 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy16994 720 EKDIAELKTKCEEL 733 (932)
Q Consensus 720 ~~~l~~l~~~~~~l 733 (932)
..++..+...+..+
T Consensus 461 ~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 461 EEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 200
>KOG0982|consensus
Probab=88.85 E-value=39 Score=36.73 Aligned_cols=10 Identities=40% Similarity=0.378 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy16994 528 NKELEGKVAQ 537 (932)
Q Consensus 528 ~~~l~~~~~~ 537 (932)
+..++..+.+
T Consensus 224 v~flerkv~e 233 (502)
T KOG0982|consen 224 VRFLERKVQE 233 (502)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 201
>PRK05642 DNA replication initiation factor; Validated
Probab=88.79 E-value=0.28 Score=50.57 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=28.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|+||..+.. . +...+.. +..+........+..++-||++|+||||.+.+
T Consensus 15 ~~tfdnF~~~-~-~~~a~~~-~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPG-A-NAAALGY-VERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcC-C-hHHHHHH-HHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 4888887743 2 2233322 22222221112235688999999999995443
No 202
>KOG2991|consensus
Probab=88.76 E-value=28 Score=34.91 Aligned_cols=7 Identities=0% Similarity=0.349 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy16994 540 RRVEEME 546 (932)
Q Consensus 540 ~~~~~l~ 546 (932)
..+..++
T Consensus 108 d~i~nLk 114 (330)
T KOG2991|consen 108 DDITNLK 114 (330)
T ss_pred HHHHhhH
Confidence 3333333
No 203
>PRK09087 hypothetical protein; Validated
Probab=88.56 E-value=0.25 Score=50.53 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=29.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.|+||..+.... +..+|.. +.....-.+..++-||++||||||.+.
T Consensus 17 ~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 17 AYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 578888775433 3446653 333222235568999999999999544
No 204
>PLN02939 transferase, transferring glycosyl groups
Probab=88.47 E-value=74 Score=39.46 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16994 772 YEDRLKAVQDELAEMKC 788 (932)
Q Consensus 772 ~~~~~~~~~~el~~l~~ 788 (932)
|....+..+..+..+..
T Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (977)
T PLN02939 381 YQESIKEFQDTLSKLKE 397 (977)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444433
No 205
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.72 E-value=3.7 Score=39.89 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=57.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q psy16994 794 SLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869 (932)
Q Consensus 794 ~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l 869 (932)
+++.++.+...++..|.+++..+..+++.....+..+...++.++++...|..++.++...+.+++..+...+..+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 3556666666777777778888888888888888888888888888888888888888888888877665555444
No 206
>PLN02939 transferase, transferring glycosyl groups
Probab=87.40 E-value=85 Score=38.95 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l 538 (932)
+++++..-+...++.+--|.+.....-..++.+-.+.+.++.+++-++..+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSET 182 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 566666666666666555544433344444444455555555555555544443
No 207
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=14 Score=42.01 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.4
Q ss_pred CCCcee
Q psy16994 135 GEDALL 140 (932)
Q Consensus 135 g~~~~i 140 (932)
|+-+.+
T Consensus 128 G~ev~~ 133 (652)
T COG2433 128 GTEVSV 133 (652)
T ss_pred CceeEe
Confidence 444433
No 208
>PRK06526 transposase; Provisional
Probab=87.34 E-value=0.28 Score=51.05 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=35.1
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecc--------eEEEecCHHHHHHHHH
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDL--------TYVNVHSCEEAYRVLR 173 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl--------~~~~v~s~~~~~~~l~ 173 (932)
|.|+ +.+..+...+..-...+++. .+.| |+.||++|+||||...++ ..|.+.++.+++.-+.
T Consensus 73 fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 73 FDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred ccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 4444 33444444444333334443 3343 788999999999987652 2344556666655554
No 209
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.30 E-value=0.41 Score=49.41 Aligned_cols=47 Identities=13% Similarity=0.354 Sum_probs=29.7
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|+||..+.. ++...+.. +..+.. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 5788865544 44555544 333322 22235789999999999996654
No 210
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=87.04 E-value=2.2 Score=51.02 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=44.2
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEE-----EecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYV-----NVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~-----~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.|.|.||+.-|.+|||||.+..- |..+ .+.+.++...-....+..--.+.|..|..|||---++.|++..
T Consensus 83 ~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~ 161 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDF 161 (674)
T ss_pred cCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECC
Confidence 58999999999999999986432 1111 1222333221112222233456799999999987787777743
No 211
>KOG3859|consensus
Probab=87.02 E-value=39 Score=34.70 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred HhcCCCCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCc
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE 210 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~ 210 (932)
++-.|+.-.|++.|.||.|||+.|-. ++ | |.+... .-+|..-++.+....-.-..
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdt--------------LF-----N-----t~f~~~-p~~H~~~~V~L~~~TyelqE 90 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDT--------------LF-----N-----TKFESE-PSTHTLPNVKLQANTYELQE 90 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHH--------------Hh-----c-----cccCCC-CCccCCCCceeecchhhhhh
Confidence 45589999999999999999873321 11 1 111111 12466666666544322223
Q ss_pred ceeEEEEEEEeCCCCcc
Q psy16994 211 LIMMSSFDICDLAGAER 227 (932)
Q Consensus 211 ~~~~s~l~~vDLagse~ 227 (932)
+...-+|++||.+|.-.
T Consensus 91 snvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 91 SNVRLKLTIVDTVGFGD 107 (406)
T ss_pred cCeeEEEEEEeeccccc
Confidence 44567899999999754
No 212
>PRK08181 transposase; Validated
Probab=86.76 E-value=0.61 Score=48.85 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=26.6
Q ss_pred eeeecccccCCCcEEEecc--------eEEEecCHHHHHHHHHhh
Q psy16994 139 LLFSFGTTNSGKTFTIQDL--------TYVNVHSCEEAYRVLRFG 175 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~Gl--------~~~~v~s~~~~~~~l~~g 175 (932)
.|+-||++|+||||...++ ..|...++.+++.-|..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a 152 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA 152 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH
Confidence 3888999999999976552 235556677777777554
No 213
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.75 E-value=0.41 Score=51.34 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=42.4
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCC-CCceeeecccccCCCcEEEecc--------eEEEecCHHHHHHHHHhh
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNG-EDALLFSFGTTNSGKTFTIQDL--------TYVNVHSCEEAYRVLRFG 175 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g-~~~~i~~~G~tgsGKt~t~~Gl--------~~~~v~s~~~~~~~l~~g 175 (932)
.+|+.+-....+...++.. +..++..+..| ....++.||++|+||||.+.++ ..+.+-++.+++.-|..+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 3455544333355666664 46677766554 3456889999999999976651 233444555665555443
No 214
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=86.62 E-value=1.8 Score=52.20 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=46.8
Q ss_pred HHHHHhc-CCCCceeeecccccCCCcEEEec----ceEEEe---cCHHHHHHHHHhhhhccccccccCccCCCCCccEEE
Q psy16994 127 NMLERYL-NGEDALLFSFGTTNSGKTFTIQD----LTYVNV---HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFS 198 (932)
Q Consensus 127 ~~v~~~~-~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v---~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~ 198 (932)
..+..++ .|.|.||+.-|.+|||||.+..- |..+.. .+..+-..-....+..--.+.|..|..|||---++.
T Consensus 75 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~ 154 (679)
T cd00124 75 RAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIE 154 (679)
T ss_pred HHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEE
Confidence 3344433 58999999999999999975332 222221 122332222222233334578999999999777777
Q ss_pred EEEE
Q psy16994 199 IKLV 202 (932)
Q Consensus 199 i~v~ 202 (932)
|.+.
T Consensus 155 l~f~ 158 (679)
T cd00124 155 LQFD 158 (679)
T ss_pred EEEC
Confidence 7764
No 215
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.32 E-value=78 Score=37.45 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.0
Q ss_pred CCCCcccchhHH
Q psy16994 8 EQPGIIPRTLNI 19 (932)
Q Consensus 8 ~~~Gi~pr~ldv 19 (932)
.|.+.++ .||-
T Consensus 4 sQv~tVq-GLDr 14 (861)
T PF15254_consen 4 SQVETVQ-GLDR 14 (861)
T ss_pred hhcchhc-chHH
Confidence 3444444 4553
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=86.18 E-value=0.64 Score=48.40 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=41.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHhh
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRFG 175 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~g 175 (932)
.|.|..+-.+...+..+|.. +..++..+. ....++-||++|+||||...+ -..|.+.++.+++.-|..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34444444444556667765 566666666 334456699999999996443 2334444555666555554
Q ss_pred h
Q psy16994 176 K 176 (932)
Q Consensus 176 ~ 176 (932)
.
T Consensus 152 ~ 152 (254)
T COG1484 152 F 152 (254)
T ss_pred H
Confidence 3
No 217
>KOG4677|consensus
Probab=86.14 E-value=57 Score=35.71 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=6.0
Q ss_pred ccccccccc
Q psy16994 923 ITPRRIFFL 931 (932)
Q Consensus 923 ~~~~~~~~~ 931 (932)
-|+.||||.
T Consensus 524 ~psArif~~ 532 (554)
T KOG4677|consen 524 LPSARIFWK 532 (554)
T ss_pred CchhHHHHH
Confidence 356788874
No 218
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=85.92 E-value=2.6 Score=50.40 Aligned_cols=70 Identities=20% Similarity=0.095 Sum_probs=42.8
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE--ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN--VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~--v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.|.|.||+.-|.+|||||.+..- |..+. ..+.++-.--....+..--.+.|..|..|||---++.|++..
T Consensus 83 ~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~ 158 (671)
T cd01381 83 EKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNK 158 (671)
T ss_pred cCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence 58999999999999999986332 11111 011222111111112222456789999999988888887743
No 219
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.80 E-value=9 Score=29.62 Aligned_cols=50 Identities=12% Similarity=0.215 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16994 803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852 (932)
Q Consensus 803 ~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~ 852 (932)
......+..++...+...-.....+.+...+...+...+..|+.+|++..
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666666666666666666666666666666543
No 220
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.73 E-value=0.61 Score=53.05 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=40.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecc----------eEEEecCHHHHHHHHH
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDL----------TYVNVHSCEEAYRVLR 173 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl----------~~~~v~s~~~~~~~l~ 173 (932)
.|+||..+.. .++...|.. +..+...--..+| .+|-||++|+||||.+..+ ..+..-+.+++..-+.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 4899986644 445555543 4444432111233 5788999999999977551 2344455566666554
Q ss_pred hh
Q psy16994 174 FG 175 (932)
Q Consensus 174 ~g 175 (932)
.+
T Consensus 188 ~~ 189 (450)
T PRK14087 188 DI 189 (450)
T ss_pred HH
Confidence 43
No 221
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.36 E-value=0.74 Score=53.48 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=32.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|+||..+.... +.-.|.. +..++...-.++|. ||-||.+|+||||.+..
T Consensus 284 ~~TFDnFvvG~s-N~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 284 KYTFDTFVIGAS-NRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCHhhhcCCCc-cHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 689988665333 3344433 44455543345665 78999999999997654
No 222
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=85.24 E-value=2.6 Score=50.14 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=44.1
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEE---EecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYV---NVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~---~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.+.|-||+.-|.+|||||.+..- |..+ ...+.++-..-.......--.+.|..|..|||---++.|.+..
T Consensus 83 ~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~ 159 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTR 159 (653)
T ss_pred cCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECC
Confidence 48899999999999999986432 1111 1112333222222223333457899999999988788887743
No 223
>KOG4460|consensus
Probab=85.20 E-value=71 Score=35.96 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy16994 310 TVQVLKISS 318 (932)
Q Consensus 310 t~~~l~~~~ 318 (932)
.|+.|-|++
T Consensus 445 ~L~~l~~~S 453 (741)
T KOG4460|consen 445 SLQELSTES 453 (741)
T ss_pred HHHhhhhhh
Confidence 344444444
No 224
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=84.78 E-value=2.1 Score=51.22 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCCceeeecccccCCCcEEEec----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.|.|.||+.-|.+|||||.+..- ...-...+.++-..-.......--.+.|..|..|||---++.|++..
T Consensus 85 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~ 164 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDD 164 (674)
T ss_pred cCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECC
Confidence 58999999999999999986322 11111123333222222223333457799999999988888887743
No 225
>KOG2991|consensus
Probab=84.71 E-value=46 Score=33.41 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16994 524 LVTKNKELEGKVAQLSRRV 542 (932)
Q Consensus 524 l~~~~~~l~~~~~~l~~~~ 542 (932)
+...+..++..-..+..+.
T Consensus 106 l~d~i~nLk~se~~lkqQ~ 124 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQ 124 (330)
T ss_pred hHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444433
No 226
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=84.68 E-value=76 Score=35.83 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q psy16994 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL 531 (932)
Q Consensus 486 i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l 531 (932)
...+..++..+......++...-.+-.++..+...+.....++..+
T Consensus 22 ~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l 67 (531)
T PF15450_consen 22 VAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQL 67 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444344444444433333333333333
No 227
>PRK08727 hypothetical protein; Validated
Probab=84.56 E-value=0.44 Score=49.05 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=26.4
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|+||..+.. .++ .+.. +.++. .......|+-||++|+||||.+..
T Consensus 15 ~~~f~~f~~~-~~n--~~~~-~~~~~---~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAA-PDG--LLAQ-LQALA---AGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCC-cHH--HHHH-HHHHH---hccCCCeEEEECCCCCCHHHHHHH
Confidence 4788886643 332 2221 12221 122234589999999999995543
No 228
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=84.47 E-value=3.7 Score=49.37 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCCCceeeecccccCCCcEEEec----ceE------------EEecCHHHHHHHHHhhhhccccccccCccCCCCCccEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTY------------VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF 197 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~------------~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~ 197 (932)
.|.|.||+.-|.+|||||.+..- |.. ....+.++-+.-....+..--.+.|..|..|||---++
T Consensus 88 ~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i 167 (693)
T cd01377 88 DRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFI 167 (693)
T ss_pred cCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeE
Confidence 58999999999999999975322 111 11223333222222233334457899999999987777
Q ss_pred EEEEEE
Q psy16994 198 SIKLVK 203 (932)
Q Consensus 198 ~i~v~~ 203 (932)
.|.+..
T Consensus 168 ~l~f~~ 173 (693)
T cd01377 168 RIHFGN 173 (693)
T ss_pred EEEECC
Confidence 777643
No 229
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=84.25 E-value=76 Score=35.49 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q psy16994 485 KIQNLKQELSELEAKYKSLS 504 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~ 504 (932)
++..|..++.++..++....
T Consensus 95 kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 95 KLQRLRREVEELKEELEKRK 114 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666666666666555543
No 230
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=84.12 E-value=3.4 Score=49.64 Aligned_cols=70 Identities=21% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCCCceeeecccccCCCcEEEec----ceE--------EEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTY--------VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~--------~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
.|.|.||+.-|.+|||||.+..- |.. ....+.++-+.-...-+..--.+.|..|..|||---++.|+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f 162 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILF 162 (691)
T ss_pred cCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEE
Confidence 69999999999999999975322 111 112334332222222233334577999999999877777766
Q ss_pred EE
Q psy16994 202 VK 203 (932)
Q Consensus 202 ~~ 203 (932)
..
T Consensus 163 ~~ 164 (691)
T cd01380 163 DK 164 (691)
T ss_pred CC
Confidence 43
No 231
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.92 E-value=0.65 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.0
Q ss_pred HHHHhc-CCCCceeeecccccCCCcEE
Q psy16994 128 MLERYL-NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 128 ~v~~~~-~g~~~~i~~~G~tgsGKt~t 153 (932)
.+..++ .+...+++-||++|+|||++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAV 56 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHH
Confidence 334434 35567899999999999984
No 232
>KOG0243|consensus
Probab=83.89 E-value=1.2e+02 Score=37.58 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHHhccc
Q psy16994 306 YAEETVQVLKISSVARDL 323 (932)
Q Consensus 306 ~~~et~~~l~~~~~~~~i 323 (932)
..++-+..|.-++.=|++
T Consensus 237 ~A~ei~klLekGs~kRrt 254 (1041)
T KOG0243|consen 237 NADEIYKLLEKGSKKRRT 254 (1041)
T ss_pred chhHHHHHHHhhhhHhHH
Confidence 456666666666655554
No 233
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.77 E-value=92 Score=36.06 Aligned_cols=8 Identities=50% Similarity=0.908 Sum_probs=4.0
Q ss_pred ccccCCCc
Q psy16994 144 GTTNSGKT 151 (932)
Q Consensus 144 G~tgsGKt 151 (932)
|-||+|||
T Consensus 29 GETGAGKS 36 (557)
T COG0497 29 GETGAGKS 36 (557)
T ss_pred cCCCCcHh
Confidence 55555553
No 234
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.74 E-value=0.68 Score=53.03 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=30.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|+||.... ..++...|.. +..+....-..+ ..++-||++|+||||.+..
T Consensus 118 ~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~-~~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 118 KYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAY-NPLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCccccccc-CCCcHHHHHH-HHHHHhCcCccC-CeEEEECCCCCCHHHHHHH
Confidence 688888543 2344445544 344444321223 4578899999999997644
No 235
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.27 E-value=0.84 Score=46.87 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=29.2
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.|+||.+++. .. ..++. .+..++.. .+.+..++-||++|+||||.+.
T Consensus 14 ~~~~d~f~~~-~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 14 PPTFDNFVAG-EN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred hhhhcccccC-Cc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 4788887732 22 23332 24444432 2445678999999999999543
No 236
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=83.17 E-value=0.8 Score=47.02 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=30.7
Q ss_pred cCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCcc
Q psy16994 163 HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAER 227 (932)
Q Consensus 163 ~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~ 227 (932)
.+++++...+......- ..+ ...-|.-++.|+|...+ .-.|+||||+|-.+
T Consensus 87 ~~~~~v~~~i~~~~~~~--~~~----~~~~s~~~i~l~i~~p~--------~~~ltLIDlPGl~~ 137 (240)
T smart00053 87 TDFDEVRNEIEAETDRV--TGT----NKGISPVPINLRVYSPH--------VLNLTLIDLPGITK 137 (240)
T ss_pred CCHHHHHHHHHHHHHHh--cCC----CCcccCcceEEEEeCCC--------CCceEEEeCCCccc
Confidence 46777777776543321 111 12345667777775532 24799999999964
No 237
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.17 E-value=36 Score=36.20 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=15.1
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHH
Q psy16994 795 LEASAATPSQYRKQLEDQVNSLKAELEQ 822 (932)
Q Consensus 795 L~~~l~~~~~~~~~l~~e~~~l~~el~~ 822 (932)
|.-++..+..+...|.+++..|+..++.
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666665555543
No 238
>KOG1514|consensus
Probab=82.88 E-value=0.77 Score=52.90 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=40.1
Q ss_pred HHHHHHHhc--CCCCceeeecccccCCCcEEEec---------------------ceEEEecCHHHHHHHHHhhhhc
Q psy16994 125 VHNMLERYL--NGEDALLFSFGTTNSGKTFTIQD---------------------LTYVNVHSCEEAYRVLRFGKSH 178 (932)
Q Consensus 125 ~~~~v~~~~--~g~~~~i~~~G~tgsGKt~t~~G---------------------l~~~~v~s~~~~~~~l~~g~~~ 178 (932)
+..++..++ +|-.+|+.--|..|||||.|+.+ +-...+.++.+++..|......
T Consensus 408 I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg 484 (767)
T KOG1514|consen 408 IEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSG 484 (767)
T ss_pred HHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhccc
Confidence 445555554 36667999999999999999887 3345678899999888765543
No 239
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=82.82 E-value=0.82 Score=51.92 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=32.2
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.|+||..+. ..++.-.|.. +..+... ...+| .+|-||++|+||||.+..
T Consensus 101 ~~tFdnFv~-g~~n~~a~~~-~~~~~~~-~~~~n-~l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 101 DYTFENFVV-GPGNSFAYHA-ALEVAKN-PGRYN-PLFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCccccccc-CCchHHHHHH-HHHHHhC-cCCCC-eEEEEcCCCCcHHHHHHH
Confidence 689998764 3455555654 3333332 12255 489999999999997764
No 240
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=82.66 E-value=3.1 Score=49.93 Aligned_cols=69 Identities=20% Similarity=0.098 Sum_probs=43.6
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE-----ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN-----VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV 202 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~-----v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~ 202 (932)
.|.|-||+.-|.+|||||.+..- |..+. ..+.++-+.--...+..--.+.|..|..|||---++.|+..
T Consensus 91 ~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~ 168 (692)
T cd01385 91 KKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYR 168 (692)
T ss_pred cCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEEC
Confidence 58899999999999999986432 11110 11233211111122223345779999999998888888774
No 241
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=82.18 E-value=0.87 Score=51.29 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.4
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
.+....++-||++|+|||++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCCCCeEEEECCCCCCHHHH
Confidence 44556789999999999984
No 242
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=81.17 E-value=5.2 Score=48.29 Aligned_cols=70 Identities=19% Similarity=0.040 Sum_probs=43.8
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEEe--cCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVNV--HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v--~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.|.|.||+.-|.+|||||.+..- |..+.- .+.++-+.-....+..--.+.|..|..|||---++.|.+..
T Consensus 88 ~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~ 163 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 163 (717)
T ss_pred cCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECC
Confidence 68999999999999999986432 111100 12222221112223333457799999999987777777643
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.15 E-value=0.86 Score=46.71 Aligned_cols=46 Identities=28% Similarity=0.490 Sum_probs=29.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.|+||....+ .+..++.. +..++ ..+....|+-||++|+||||.+.
T Consensus 11 ~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred chhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 4777776632 33444443 22322 24567789999999999998653
No 244
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=81.09 E-value=3.5 Score=49.43 Aligned_cols=68 Identities=24% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE---ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN---VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~---v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
.|.|-||+.-|.+|||||.+..- +..+. -.+..+-..-....+..--.+.|..|..|||---++.|..
T Consensus 84 ~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f 158 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFL 158 (677)
T ss_pred cCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEe
Confidence 68999999999999999986432 11111 0112221111111222234577999999999877887766
No 245
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.77 E-value=70 Score=39.20 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy16994 244 INSSLHVLARCFNVLRE 260 (932)
Q Consensus 244 in~sl~~l~~~i~~l~~ 260 (932)
|=+|-..+++||..|.-
T Consensus 93 iLkSr~v~~~VV~~L~L 109 (726)
T PRK09841 93 LLQSRMILGKTIAELNL 109 (726)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 44677777777777753
No 246
>PF13245 AAA_19: Part of AAA domain
Probab=80.19 E-value=0.45 Score=39.00 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=14.1
Q ss_pred CceeeecccccCCCcEEEe
Q psy16994 137 DALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~ 155 (932)
+..++..|+.|||||+|+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4445558999999998654
No 247
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.15 E-value=1.2 Score=50.29 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=30.8
Q ss_pred cceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 103 NLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 103 ~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
..|+||.... ..++...|.. +..+.... .+....++-||++|+||||.+..
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~-~~~~n~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAA-ALAVAENP-GKAYNPLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCccccccc-CCcHHHHHHH-HHHHHhCc-CccCCeEEEECCCCCcHHHHHHH
Confidence 3688988443 3444445543 44444432 22223578899999999997643
No 248
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.08 E-value=1.3e+02 Score=35.31 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.0
Q ss_pred cccccCCCcEEEec
Q psy16994 143 FGTTNSGKTFTIQD 156 (932)
Q Consensus 143 ~G~tgsGKt~t~~G 156 (932)
.|..|+||++||.|
T Consensus 33 SGGNGAGKSTTMA~ 46 (1480)
T COG3096 33 SGGNGAGKSTTMAA 46 (1480)
T ss_pred cCCCCCcccchHHH
Confidence 36678999999999
No 249
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.02 E-value=0.77 Score=46.36 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
+.+++.++.-..-+.|+..|+||||||+||..
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAa 146 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAA 146 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHH
Confidence 55667777777888999999999999998754
No 250
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=79.81 E-value=6.7 Score=47.00 Aligned_cols=69 Identities=20% Similarity=0.087 Sum_probs=42.7
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEEec-CHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVNVH-SCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV 202 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v~-s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~ 202 (932)
.|.|.||+.-|.+|||||.+..= |..+.-. +.++-+.-....+..--.+.|..|..|||---++.|++.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~ 162 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 162 (677)
T ss_pred cCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEEC
Confidence 58999999999999999985322 1111111 122211111112222345778999999998888888774
No 251
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.63 E-value=1.2e+02 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhhHHHH
Q psy16994 488 NLKQELSELEAKYKSLSEE 506 (932)
Q Consensus 488 ~l~~~l~~l~~~l~~l~~~ 506 (932)
.|..++....++|..|+.+
T Consensus 306 ~L~qqV~qs~EKIa~LEqE 324 (518)
T PF10212_consen 306 GLAQQVQQSQEKIAKLEQE 324 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 252
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=79.51 E-value=0.88 Score=46.18 Aligned_cols=47 Identities=23% Similarity=0.489 Sum_probs=30.7
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCc-eeeecccccCCCcEEEec
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA-LLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~-~i~~~G~tgsGKt~t~~G 156 (932)
..+|..++-+.....+..+ ...++.|..+ .++.||..|+|||.+|.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred CCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHH
Confidence 4566777755555555544 2556666543 356699999999987654
No 253
>PF13479 AAA_24: AAA domain
Probab=79.45 E-value=0.81 Score=46.38 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=28.7
Q ss_pred CceeeecccccCCCcEEEec---------------------ceEEEecCHHHHHHHHHh
Q psy16994 137 DALLFSFGTTNSGKTFTIQD---------------------LTYVNVHSCEEAYRVLRF 174 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G---------------------l~~~~v~s~~~~~~~l~~ 174 (932)
+..++.||++|+|||++... ...+.|.+++++...+..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~ 61 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDE 61 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHH
Confidence 45688999999999985432 356777888888887754
No 254
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.25 E-value=84 Score=32.66 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16994 756 NDERSTKHNQEKLLKIYEDR 775 (932)
Q Consensus 756 ~el~~l~~~l~~~~~~~~~~ 775 (932)
.+...++.++..++..|-.+
T Consensus 225 dEyEklE~EL~~lY~~Y~~k 244 (267)
T PF10234_consen 225 DEYEKLEEELQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 255
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.06 E-value=94 Score=33.10 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy16994 569 KEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621 (932)
Q Consensus 569 ~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~ 621 (932)
...+.+++.......-...+|..+...+.-+++-+++.+.+++..+..+..++
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444334444444444444444444444444444333333333
No 256
>KOG2751|consensus
Probab=79.04 E-value=1.1e+02 Score=33.76 Aligned_cols=7 Identities=29% Similarity=0.192 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy16994 745 QSYLNTI 751 (932)
Q Consensus 745 ~~l~~~l 751 (932)
..++.++
T Consensus 249 ~Sle~q~ 255 (447)
T KOG2751|consen 249 DSLEAQI 255 (447)
T ss_pred HHHHHHH
Confidence 3333333
No 257
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=79.02 E-value=35 Score=28.11 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 756 NDERSTKHNQEKLLKIYEDRLKAVQDEL 783 (932)
Q Consensus 756 ~el~~l~~~l~~~~~~~~~~~~~~~~el 783 (932)
..+-.+......+...|++++..+..++
T Consensus 46 ~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 46 QKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444433
No 258
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=78.81 E-value=1.1e+02 Score=33.97 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16994 581 QLRSEVEKLSEERRLLTVRS 600 (932)
Q Consensus 581 ~l~~~l~~l~~~~~~l~~~l 600 (932)
.+..++..+......++..+
T Consensus 68 ~~~~Ei~~L~~~K~~le~aL 87 (384)
T PF03148_consen 68 ELDEEIDLLEEEKRRLEKAL 87 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 259
>KOG4302|consensus
Probab=78.81 E-value=1.5e+02 Score=35.20 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 519 RENRDLVTKNKELEGKVAQLSRR 541 (932)
Q Consensus 519 ~~~~~l~~~~~~l~~~~~~l~~~ 541 (932)
.....+...+...+.++..+-..
T Consensus 61 ~~~~~L~~~ia~~eael~~l~s~ 83 (660)
T KOG4302|consen 61 ESKARLLQEIAVIEAELNDLCSA 83 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 260
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=78.65 E-value=2.3 Score=45.01 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.7
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
.|+...|+..|++|+|||..
T Consensus 1 ~g~~f~I~vvG~sg~GKSTl 20 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTF 20 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHH
Confidence 48889999999999999873
No 261
>KOG4807|consensus
Probab=78.64 E-value=99 Score=33.14 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=4.0
Q ss_pred CCccCCCC
Q psy16994 270 KLIPFRDS 277 (932)
Q Consensus 270 ~~vp~r~s 277 (932)
..+..|+|
T Consensus 63 ~~~~LR~C 70 (593)
T KOG4807|consen 63 GEIDLRSC 70 (593)
T ss_pred ccccHHHH
Confidence 44445554
No 262
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=78.53 E-value=49 Score=29.54 Aligned_cols=18 Identities=0% Similarity=0.010 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16994 742 ADCQSYLNTIKNMENDER 759 (932)
Q Consensus 742 ~~l~~l~~~l~~l~~el~ 759 (932)
.++..++.+...+..++.
T Consensus 84 ~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 84 LRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 263
>PRK10436 hypothetical protein; Provisional
Probab=78.39 E-value=0.58 Score=53.05 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=22.7
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.+..++...++.|+..|+||||||+|++
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4455566789999999999999999664
No 264
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.19 E-value=0.97 Score=42.19 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHhcCCCCceeeecccccCCCcEE
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+...+.......++.+|++|+|||++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 33333333455788899999999984
No 265
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.94 E-value=1.2 Score=48.93 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=15.5
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
.|....++.||+||+|||.|
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTAT 58 (366)
T ss_pred CCCCccEEEECCCCCCHhHH
Confidence 34444499999999999874
No 266
>PRK11519 tyrosine kinase; Provisional
Probab=77.45 E-value=1.3e+02 Score=36.76 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy16994 244 INSSLHVLARCFNVLRE 260 (932)
Q Consensus 244 in~sl~~l~~~i~~l~~ 260 (932)
|=+|-..+++||..|.-
T Consensus 93 ILkSr~v~~~VV~~L~L 109 (719)
T PRK11519 93 LIRSRLVLGKTVDDLDL 109 (719)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 55777888888888864
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.41 E-value=1 Score=44.06 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.0
Q ss_pred CceeeecccccCCCcEEEec--------ceEEEecCHHHHHHHHHh
Q psy16994 137 DALLFSFGTTNSGKTFTIQD--------LTYVNVHSCEEAYRVLRF 174 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G--------l~~~~v~s~~~~~~~l~~ 174 (932)
...++.+|++|+||||...+ -..+..-++.+++..|..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 44588899999999996544 233455566777777754
No 268
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.31 E-value=1.1e+02 Score=33.83 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy16994 486 IQNLKQELSELEAKYKS 502 (932)
Q Consensus 486 i~~l~~~l~~l~~~l~~ 502 (932)
|..+++.++.....+.+
T Consensus 64 i~~lqkkL~~y~~~l~e 80 (395)
T PF10267_consen 64 IAQLQKKLEQYHKRLKE 80 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444333333333
No 269
>PRK02119 hypothetical protein; Provisional
Probab=76.87 E-value=23 Score=28.64 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 828 ~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
.+|+.++.-.+..+..|...+.+.+.++..+...+..|..++..
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444333344444444433
No 270
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=76.63 E-value=90 Score=38.28 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCcee
Q psy16994 115 TTQAELFQNIVHNMLERYLNGEDALL 140 (932)
Q Consensus 115 ~~q~~v~~~~~~~~v~~~~~g~~~~i 140 (932)
.++.+|... ..++..|++-.|-.+
T Consensus 88 ~teieiLkS--r~v~~~VV~~L~L~~ 111 (726)
T PRK09841 88 APEIQLLQS--RMILGKTIAELNLRD 111 (726)
T ss_pred HHHHHHHHH--HHHHHHHHHHhCCce
Confidence 355555543 455555555444333
No 271
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=76.53 E-value=0.73 Score=45.22 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=21.4
Q ss_pred HHHHHHHhcCC-CCceeeecccccCCCcEEEec
Q psy16994 125 VHNMLERYLNG-EDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 125 ~~~~v~~~~~g-~~~~i~~~G~tgsGKt~t~~G 156 (932)
+..++..+-.+ ....++..|+||||||++|.+
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33344444443 455666678999999998876
No 272
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.66 E-value=1.7 Score=52.01 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=16.9
Q ss_pred CCCCceeeecccccCCCcEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.|.+.+||-||++|+|||.|+
T Consensus 778 sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 345667889999999999854
No 273
>PRK04406 hypothetical protein; Provisional
Probab=75.45 E-value=30 Score=28.16 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q psy16994 828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA 870 (932)
Q Consensus 828 ~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~ 870 (932)
.+|+.++.-.+..|..|...+...+.++..+...+..|..++.
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433334444444443
No 274
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=75.25 E-value=14 Score=44.89 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEEe-----cCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVNV-----HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v-----~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.|.|-||+.-|.+|||||.+..- |..+.- .+.+.++. ...-+..--.+.|..|..|||---++.|....
T Consensus 83 ~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~-~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~ 160 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRA-LFTILEAFGNVSTALNGNATRFTQILSLDFDQ 160 (767)
T ss_pred cCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHh-hchHHHHhhccCcCCCCCcCcceeEEEEEECC
Confidence 68999999999999999975322 111110 01122111 01112223357789999999988888887743
No 275
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.42 E-value=0.79 Score=53.84 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.+..++...++.|+..|+||||||+||+.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 44566677889999999999999997543
No 276
>PLN03188 kinesin-12 family protein; Provisional
Probab=74.31 E-value=2.6e+02 Score=35.70 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.2
Q ss_pred CCCCCcccchhHHHhhcCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~ 26 (932)
..++||+||++..||+.|..
T Consensus 197 ~~e~GIIPRaledLF~~I~e 216 (1320)
T PLN03188 197 GDQQGLTPRVFERLFARINE 216 (1320)
T ss_pred cccCCchHHHHHHHHHHHHh
Confidence 35799999999999999864
No 277
>PRK11519 tyrosine kinase; Provisional
Probab=74.05 E-value=1.4e+02 Score=36.53 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCce
Q psy16994 116 TQAELFQNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 116 ~q~~v~~~~~~~~v~~~~~g~~~~ 139 (932)
++.+|... ..++..|++-.|-.
T Consensus 89 tEieILkS--r~v~~~VV~~L~L~ 110 (719)
T PRK11519 89 AEIQLIRS--RLVLGKTVDDLDLD 110 (719)
T ss_pred HHHHHHHH--HHHHHHHHHHhCCC
Confidence 45555533 44555555444433
No 278
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.75 E-value=1.1 Score=51.50 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.+..++...++.|+..|+||||||+||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45556677788999999999999997643
No 279
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=73.69 E-value=1.2e+02 Score=31.63 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=5.7
Q ss_pred chhHHHHHHHH
Q psy16994 861 PLKGLENQMAK 871 (932)
Q Consensus 861 ~l~~le~~l~~ 871 (932)
.|+.|+.-|..
T Consensus 151 RLK~LEe~Lk~ 161 (351)
T PF07058_consen 151 RLKVLEEGLKG 161 (351)
T ss_pred HHHHHHhhccC
Confidence 44555555543
No 280
>KOG0989|consensus
Probab=73.61 E-value=1.6 Score=45.40 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCC-CCceeeecccccCCCcEEE
Q psy16994 124 IVHNMLERYLNG-EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 124 ~~~~~v~~~~~g-~~~~i~~~G~tgsGKt~t~ 154 (932)
.+..++...+.| .--..+-|||.|+|||.|+
T Consensus 43 ~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 43 HVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333344444433 4455778999999999853
No 281
>PTZ00014 myosin-A; Provisional
Probab=73.27 E-value=8.4 Score=47.12 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=43.5
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE----ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN----VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVK 203 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~----v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~ 203 (932)
.|.|-||+.-|.+|||||.+..- +..+. -.+.++.+--....+..--.+.|..|..|||--=++.|++..
T Consensus 180 ~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~ 257 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGE 257 (821)
T ss_pred cCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcC
Confidence 68999999999999999964211 11000 012333222222222333457799999999988888887743
No 282
>KOG2685|consensus
Probab=73.16 E-value=1.5e+02 Score=32.53 Aligned_cols=235 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHH--------
Q psy16994 501 KSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF-------- 572 (932)
Q Consensus 501 ~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l-------- 572 (932)
..|...+..+..=...+..+++.+..++..+......++..+..+. .-+.-...-+..-...+
T Consensus 73 ~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~---------~P~~ia~eCL~~RekR~~~dlv~D~ 143 (421)
T KOG2685|consen 73 EKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALA---------LPLSIAEECLAHREKRQGIDLVHDE 143 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHhhcccchhhccc
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------------------------
Q psy16994 573 --KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE---------------------------- 622 (932)
Q Consensus 573 --~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~---------------------------- 622 (932)
.++-.+.+-+..-...+...+.....++...+.....+...+....+.+.
T Consensus 144 Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~ 223 (421)
T KOG2685|consen 144 VETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNISYKPDPTRVPPNS 223 (421)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCeeccCCCccCCCCC
Q ss_pred ---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 623 ---------------------------------ELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ 669 (932)
Q Consensus 623 ---------------------------------~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~ 669 (932)
.+...-..+..+....+..+...+...+.-...+..++.....++..
T Consensus 224 ~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~ 303 (421)
T KOG2685|consen 224 SSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIAD 303 (421)
T ss_pred CCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 670 SAHDEQALQKEIKNLGSLLVDKDKTIGD-----------------LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732 (932)
Q Consensus 670 ~~~~~~~l~~~i~~l~~~l~~l~~~~~~-----------------l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~ 732 (932)
.+..|..++..|.....-+.-....+.. |-.++..+...+..++.++.+.+..+..|......
T Consensus 304 ~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~r 383 (421)
T KOG2685|consen 304 AENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRAR 383 (421)
T ss_pred HHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q psy16994 733 LTQQVTKLEADC 744 (932)
Q Consensus 733 l~~~l~~l~~~l 744 (932)
++.+|.-....+
T Consensus 384 Le~di~~k~nsL 395 (421)
T KOG2685|consen 384 LERDIAIKANSL 395 (421)
T ss_pred HHHHHHHhhcch
No 283
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.83 E-value=1.2e+02 Score=31.35 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy16994 565 LDEAKEEFK 573 (932)
Q Consensus 565 l~~~~~~l~ 573 (932)
+.|+...+.
T Consensus 168 V~WLR~~L~ 176 (269)
T PF05278_consen 168 VDWLRSKLE 176 (269)
T ss_pred hHHHHHHHH
Confidence 334443333
No 284
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.68 E-value=23 Score=26.62 Aligned_cols=23 Identities=4% Similarity=0.099 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 745 QSYLNTIKNMENDERSTKHNQEK 767 (932)
Q Consensus 745 ~~l~~~l~~l~~el~~l~~~l~~ 767 (932)
..++.+.+.+...++.+.+.+..
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 285
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.58 E-value=2.6 Score=47.86 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred cceecceecCCCCChHHHHHHHHHHHHHHh--cCC--CCceeeecccccCCCcEEEec
Q psy16994 103 NLYRFSNIYGPHTTQAELFQNIVHNMLERY--LNG--EDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 103 ~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~--~~g--~~~~i~~~G~tgsGKt~t~~G 156 (932)
..|+||..+.. .++...|.. +..+.... ..| +| .+|-||++|+||||.+..
T Consensus 106 ~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 106 PLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred ccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 36899987653 344444433 44444332 123 33 467899999999997544
No 286
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.53 E-value=62 Score=31.25 Aligned_cols=62 Identities=24% Similarity=0.473 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN--RDLVTKNKELEGKVAQLSRRVEEME 546 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~--~~l~~~~~~l~~~~~~l~~~~~~l~ 546 (932)
++..+..++..+..++..+...+..+..++..+.... .++...+..+..++..+..++..+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433322 2333444444444444444443333
No 287
>PRK06921 hypothetical protein; Provisional
Probab=71.93 E-value=2.7 Score=44.11 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHhc---CCCCceeeecccccCCCcEEEec
Q psy16994 125 VHNMLERYL---NGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 125 ~~~~v~~~~---~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
+..++..+- .+....++.||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 445666553 23355688899999999996543
No 288
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=71.89 E-value=1.9e+02 Score=33.18 Aligned_cols=209 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q psy16994 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLT--VRSAELEYELEQRDYLIAVKTDG 620 (932)
Q Consensus 543 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~--~~l~~l~~~l~~~~~~l~~l~~~ 620 (932)
.... ...........++...+..+...+...+........+..-.. ....-..........++...+..
T Consensus 184 ~~~~---------~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~ 254 (458)
T COG3206 184 DQLE---------AQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARAR 254 (458)
T ss_pred HHhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy16994 621 AEELQEKLDYMENKFQEESLVYE---RLMSEKENL-ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTI- 695 (932)
Q Consensus 621 ~~~l~~~l~~l~~~l~~~~~~~~---~~~~~l~~~-~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~- 695 (932)
.......+..+...... .. ......... +..++.+...+...+..+..........+..+..++..+...+
T Consensus 255 ~~~~~a~l~~~~~~~~~----~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 255 LAQAEARLASLLQLLPL----GREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHhhcc----cccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 696 GDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCE---ELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764 (932)
Q Consensus 696 ~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~---~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~ 764 (932)
..+..-+.....+...++.....+..++..++.+.. ....++.+++.+.+..+.-+..+-.....+...
T Consensus 331 ~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 331 AELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 289
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.73 E-value=3 Score=45.56 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.0
Q ss_pred CceeeecccccCCCcEEEec
Q psy16994 137 DALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G 156 (932)
...|+..|++|+|||+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567789999999998765
No 290
>PRK00846 hypothetical protein; Provisional
Probab=71.71 E-value=50 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16994 809 LEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQ 853 (932)
Q Consensus 809 l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~ 853 (932)
+.+.+..|...+.+....+..|...+......|..|..++..+..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444444444444444444444444444444333
No 291
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.70 E-value=0.94 Score=45.31 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=15.8
Q ss_pred CceeeecccccCCCcEEEe
Q psy16994 137 DALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~ 155 (932)
++.|+-.|+||||||+++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678889999999998654
No 292
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=71.68 E-value=1.2 Score=48.87 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=21.1
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.+..++....+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 34444444468899999999999996643
No 293
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=71.44 E-value=1.3 Score=43.19 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=30.8
Q ss_pred ceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994 138 ALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF 217 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l 217 (932)
-+|+-.|+.|||||. ++..|..|....++.+...|. .+.+ .. .....+
T Consensus 4 ~~vlL~Gps~SGKTa---------------Lf~~L~~~~~~~T~tS~e~n~----~~~~--------~~-----~~~~~~ 51 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTA---------------LFSQLVNGKTVPTVTSMENNI----AYNV--------NN-----SKGKKL 51 (181)
T ss_dssp -EEEEE-STTSSHHH---------------HHHHHHHSS---B---SSEEE----ECCG--------SS-----TCGTCE
T ss_pred ceEEEEcCCCCCHHH---------------HHHHHhcCCcCCeeccccCCc----eEEe--------ec-----CCCCEE
Confidence 468889999999976 455555553333333221111 1111 11 122468
Q ss_pred EEEeCCCCcccc
Q psy16994 218 DICDLAGAERQK 229 (932)
Q Consensus 218 ~~vDLagse~~~ 229 (932)
.+||..|-+|.+
T Consensus 52 ~lvD~PGH~rlr 63 (181)
T PF09439_consen 52 RLVDIPGHPRLR 63 (181)
T ss_dssp CEEEETT-HCCC
T ss_pred EEEECCCcHHHH
Confidence 999999999876
No 294
>PRK10698 phage shock protein PspA; Provisional
Probab=71.34 E-value=1.2e+02 Score=30.74 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q psy16994 809 LEDQVNSLKAE 819 (932)
Q Consensus 809 l~~e~~~l~~e 819 (932)
+..++..|+.+
T Consensus 206 ve~ELa~LK~~ 216 (222)
T PRK10698 206 ISEQLAALKAK 216 (222)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 295
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.55 E-value=1.3 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=18.9
Q ss_pred cCCCCceeeecccccCCCcEEEec
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
+....+.|+-.|+||||||+||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 334578999999999999986543
No 296
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=70.03 E-value=0.79 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.1
Q ss_pred CCCceeeecccccCCCcEE
Q psy16994 135 GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t 153 (932)
|++-+|+..|++|+|||..
T Consensus 2 g~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp EEEEEEEEEECTTSSHHHH
T ss_pred CceEEEEEECCCCCCHHHH
Confidence 7788999999999999874
No 297
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.00 E-value=0.78 Score=42.21 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=11.4
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..+++.+|++|+|||.
T Consensus 4 ~~~~~i~G~~G~GKT~ 19 (131)
T PF13401_consen 4 QRILVISGPPGSGKTT 19 (131)
T ss_dssp ---EEEEE-TTSSHHH
T ss_pred CcccEEEcCCCCCHHH
Confidence 4678999999999998
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=68.94 E-value=1.5 Score=45.94 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred HHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
+..++....+.|+-.|+||||||++|.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 445555567788899999999998553
No 299
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.86 E-value=1.6 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.0
Q ss_pred CCceeeecccccCCCcEEEec
Q psy16994 136 EDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~~G 156 (932)
.++.|+..|+||||||+||..
T Consensus 148 ~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 466788899999999996543
No 300
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=68.66 E-value=1.3 Score=45.59 Aligned_cols=15 Identities=53% Similarity=0.749 Sum_probs=11.9
Q ss_pred eeecccccCCCcEEE
Q psy16994 140 LFSFGTTNSGKTFTI 154 (932)
Q Consensus 140 i~~~G~tgsGKt~t~ 154 (932)
+.-+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999964
No 301
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.65 E-value=45 Score=26.93 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 828 ~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
.+|+.++.-.+..|..|...+.+.+.++..+...+..|..++..
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444333334444444433
No 302
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=68.40 E-value=1.3 Score=44.13 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.5
Q ss_pred HHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
+..++...+..++..|+.|+||||+|..
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~ 37 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKA 37 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHH
Confidence 3444444555566689999999997654
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.25 E-value=2e+02 Score=31.95 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy16994 242 RTINSSLHVLARCFNVLREN 261 (932)
Q Consensus 242 ~~in~sl~~l~~~i~~l~~~ 261 (932)
..+.+.|....+=+.-|-.+
T Consensus 65 ~~lqkkL~~y~~~l~ele~~ 84 (395)
T PF10267_consen 65 AQLQKKLEQYHKRLKELEQG 84 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34444454444444444443
No 304
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=68.08 E-value=1.8 Score=46.82 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEE---Eec-------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCcc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFT---IQD-------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHC 195 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t---~~G-------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~ 195 (932)
.++-.-+-.|.-.+++-|||+|+|||.. |.| .-...+.+..|+..+++.+...|.. .|.-.
T Consensus 37 ~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~---------gr~ti 107 (436)
T COG2256 37 KPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLL---------GRRTI 107 (436)
T ss_pred chHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhc---------CCceE
Confidence 3444444567778888899999999963 222 1223467889999999998777632 23345
Q ss_pred EEEEEEEEeCC
Q psy16994 196 VFSIKLVKVDP 206 (932)
Q Consensus 196 i~~i~v~~~~~ 206 (932)
+|.=.|.+.+.
T Consensus 108 LflDEIHRfnK 118 (436)
T COG2256 108 LFLDEIHRFNK 118 (436)
T ss_pred EEEehhhhcCh
Confidence 55555555543
No 305
>PHA00729 NTP-binding motif containing protein
Probab=68.03 E-value=2.8 Score=42.37 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
+.-++..+..|--..|+.+|++|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3445666655444579999999999998543
No 306
>PRK09183 transposase/IS protein; Provisional
Probab=67.59 E-value=2.9 Score=43.78 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.2
Q ss_pred eeeecccccCCCcEEEec
Q psy16994 139 LLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G 156 (932)
.|+-+|++|+||||.+.+
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 456789999999996544
No 307
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=67.56 E-value=4 Score=44.23 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=34.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcC----CCCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLN----GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~----g~~~~i~~~G~tgsGKt~t 153 (932)
.++|+++.+..--...+++.++..+...++. ..--.|.-||+.|+|||+.
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 5677877666555556666666666666663 2334577799999999974
No 308
>KOG4438|consensus
Probab=67.52 E-value=2e+02 Score=31.70 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.9
Q ss_pred CcHHHHHHHHHHHHHhcc
Q psy16994 305 AYAEETVQVLKISSVARD 322 (932)
Q Consensus 305 ~~~~et~~~l~~~~~~~~ 322 (932)
+.+.+||+..-|..++-.
T Consensus 72 ei~~~sL~~~~l~ki~~~ 89 (446)
T KOG4438|consen 72 EIHAESLQFKLLCKILDM 89 (446)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666665555544443
No 309
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=67.30 E-value=7.1 Score=34.90 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.5
Q ss_pred eeecccccCCCcEE
Q psy16994 140 LFSFGTTNSGKTFT 153 (932)
Q Consensus 140 i~~~G~tgsGKt~t 153 (932)
|+-+|.+|+|||..
T Consensus 2 V~iiG~~~~GKSTl 15 (116)
T PF01926_consen 2 VAIIGRPNVGKSTL 15 (116)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45689999999873
No 310
>PRK04406 hypothetical protein; Provisional
Probab=67.12 E-value=62 Score=26.41 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy16994 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~ 857 (932)
.+.+.+.+|...+.+....+.+|+..+......|..|..++..+...+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777777777777777777776666655543
No 311
>KOG0727|consensus
Probab=66.88 E-value=5.8 Score=39.84 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=42.7
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhc---CCC--CceeeecccccCCCcEEEec------ceEEEecCHHHHHHHHH
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYL---NGE--DALLFSFGTTNSGKTFTIQD------LTYVNVHSCEEAYRVLR 173 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~---~g~--~~~i~~~G~tgsGKt~t~~G------l~~~~v~s~~~~~~~l~ 173 (932)
.+|..|=+-+..-++|-+.+-.|+...-+ -|. -..++.||++|+|||..... ...++|-..+=+..+|-
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 44555666666666777776666665443 143 35688999999999864322 34455555444445554
Q ss_pred hh
Q psy16994 174 FG 175 (932)
Q Consensus 174 ~g 175 (932)
.|
T Consensus 232 eg 233 (408)
T KOG0727|consen 232 EG 233 (408)
T ss_pred cC
Confidence 33
No 312
>PRK00295 hypothetical protein; Provisional
Probab=66.86 E-value=51 Score=26.30 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q psy16994 827 VRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872 (932)
Q Consensus 827 ~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l 872 (932)
+.+|+.++.-.+..|..|...+.+.+.++..+...+..|..++..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555544444444444555555444
No 313
>PRK04325 hypothetical protein; Provisional
Probab=66.82 E-value=51 Score=26.78 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16994 810 EDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK 850 (932)
Q Consensus 810 ~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~ 850 (932)
.+.+.+|...+.+....+.+|...+......|..|..++..
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433333
No 314
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=66.62 E-value=1.3e+02 Score=29.35 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 753 NMENDERSTKHNQEKLLKIYEDRLKAVQDE 782 (932)
Q Consensus 753 ~l~~el~~l~~~l~~~~~~~~~~~~~~~~e 782 (932)
.+..++..++....++....+..+..+..+
T Consensus 145 ~LWr~v~~lRr~f~elr~~TerdL~~~r~e 174 (182)
T PF15035_consen 145 SLWREVVALRRQFAELRTATERDLSDMRAE 174 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444333334444433333
No 315
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=66.17 E-value=1.4 Score=40.66 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.6
Q ss_pred ceeeecccccCCCcEEEe
Q psy16994 138 ALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~ 155 (932)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999998543
No 316
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=65.66 E-value=4.8 Score=40.41 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=26.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHhcC-C-CCceeeecccccCCCcE
Q psy16994 111 YGPHTTQAELFQNIVHNMLERYLN-G-EDALLFSFGTTNSGKTF 152 (932)
Q Consensus 111 ~~~~~~q~~v~~~~~~~~v~~~~~-g-~~~~i~~~G~tgsGKt~ 152 (932)
|+....|..+-.. ...++..+.. | .-..++-|||+|.|||+
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhH
Confidence 4455667888766 6677777653 2 33567889999999986
No 317
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=65.41 E-value=1.6 Score=40.29 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.0
Q ss_pred eeecccccCCCcEEEec
Q psy16994 140 LFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~G 156 (932)
++.+|++|+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999987654
No 318
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=65.30 E-value=9.3 Score=46.48 Aligned_cols=69 Identities=22% Similarity=0.126 Sum_probs=41.6
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEEe-------cCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVNV-------HSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV 202 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~v-------~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~ 202 (932)
.|.|.||+..|.+|||||.+..= |..+.- .+..+-+.........-..+.|..|..|||---++.|.+.
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~ 161 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFD 161 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEE
T ss_pred cccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEec
Confidence 58899999999999999986322 111100 1122221111112222235678999999998777777764
No 319
>KOG4460|consensus
Probab=65.16 E-value=2.5e+02 Score=31.94 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=20.4
Q ss_pred cceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCc
Q psy16994 103 NLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 103 ~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
.+|..++|.-....- ..++.|..+.++.|=+..=||.
T Consensus 102 V~feV~~vl~s~~GS------------~VaL~G~~Gi~vMeLp~rwG~~ 138 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGS------------HVALIGIKGLMVMELPKRWGKN 138 (741)
T ss_pred ceEEEEEEEecCCCc------------eEEEecCCeeEEEEchhhcCcc
Confidence 367777776533221 1235677777777654444443
No 320
>KOG4807|consensus
Probab=65.02 E-value=2e+02 Score=30.90 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q psy16994 488 NLKQELSELEAKYKSLSEEH 507 (932)
Q Consensus 488 ~l~~~l~~l~~~l~~l~~~l 507 (932)
.|++++..+..+++.+..+.
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~ 314 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQG 314 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444433
No 321
>PRK00295 hypothetical protein; Provisional
Probab=64.79 E-value=56 Score=26.04 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy16994 809 LEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858 (932)
Q Consensus 809 l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~ 858 (932)
+.+.+.+|...+.+....+.+|...+......|..|..++..+...+...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557777777777777778887777777777777777777776666543
No 322
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=64.75 E-value=3.2 Score=37.52 Aligned_cols=40 Identities=35% Similarity=0.612 Sum_probs=23.0
Q ss_pred ceecCCCCChHHHHHHHHHHHHHHhcCC---CCceeee-cccccCCCcE
Q psy16994 108 SNIYGPHTTQAELFQNIVHNMLERYLNG---EDALLFS-FGTTNSGKTF 152 (932)
Q Consensus 108 d~v~~~~~~q~~v~~~~~~~~v~~~~~g---~~~~i~~-~G~tgsGKt~ 152 (932)
..+|++. +-..++...|...+.. ....|++ .|+||+||||
T Consensus 25 ~~l~GQh-----la~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~ 68 (127)
T PF06309_consen 25 RNLFGQH-----LAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNF 68 (127)
T ss_pred HHccCcH-----HHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHH
Confidence 4567743 2233344445554433 2345555 4999999999
No 323
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.62 E-value=62 Score=26.17 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy16994 809 LEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858 (932)
Q Consensus 809 l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~ 858 (932)
+.+.+.+|...+.+....+.+|...+......|..|..++..+...+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777777777777777777777777777777777777776666543
No 324
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.52 E-value=2.4 Score=44.82 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.3
Q ss_pred cCCCCceeeecccccCCCcEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t 153 (932)
+....+.++-+|++|+|||++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHH
Confidence 344456788899999999984
No 325
>KOG2655|consensus
Probab=64.02 E-value=12 Score=40.52 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=43.4
Q ss_pred hcCCCCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhh-hhccccccccCccCCCCCccEEEEEEEEeCCCCCc
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFG-KSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEE 210 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g-~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~ 210 (932)
+-.|+.-+++..|.+|+|||+.|-- ++... ..++.+ ...+-+.|-...|........ .
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNs--------------Lf~~~l~~~~~~-----~~~~~~~~~t~~i~~~~~~ie--e 74 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINS--------------LFLTDLSGNREV-----PGASERIKETVEIESTKVEIE--E 74 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHH--------------HHhhhccCCccc-----CCcccCccccceeeeeeeeec--C
Confidence 3479999999999999999873221 11111 112221 223334444445544444332 1
Q ss_pred ceeEEEEEEEeCCCCccc
Q psy16994 211 LIMMSSFDICDLAGAERQ 228 (932)
Q Consensus 211 ~~~~s~l~~vDLagse~~ 228 (932)
....=+|++||..|.--.
T Consensus 75 ~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 75 NGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred CCeEEeeEEeccCCCccc
Confidence 234568999999997543
No 326
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=63.88 E-value=2 Score=38.79 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.5
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
+|+-.|++|||||+
T Consensus 1 vI~I~G~~gsGKST 14 (121)
T PF13207_consen 1 VIIISGPPGSGKST 14 (121)
T ss_dssp EEEEEESTTSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 47889999999988
No 327
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.65 E-value=1.4 Score=43.96 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=14.6
Q ss_pred eeeecccccCCCcEEEec
Q psy16994 139 LLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G 156 (932)
.|+-.|+||+|||+|+.-
T Consensus 3 vi~lvGptGvGKTTt~aK 20 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAK 20 (196)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCchHhHHHH
Confidence 467789999999997543
No 328
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=63.63 E-value=3.9 Score=45.30 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 115 TTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 115 ~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..|..+|+.++..+.. .....+|..|+.|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 4578888886554433 44567788999999999965
No 329
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=63.51 E-value=3 Score=46.64 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=29.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-hcC--C--CCceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-YLN--G--EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~--g--~~~~i~~~G~tgsGKt~t~ 154 (932)
.+.|+.|.+-+..-.++...+..|+... .+. | ....|+-||++|+|||++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 3555666655444445555444444432 111 2 2356888999999999853
No 330
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=63.51 E-value=3.2 Score=40.69 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+..++.....|...+++-+|++|+|||+.
T Consensus 12 l~~~l~~~~~~~~~~~ll~G~~G~GKT~l 40 (185)
T PF13191_consen 12 LRDLLDAAQSGSPRNLLLTGESGSGKTSL 40 (185)
T ss_dssp HHHTTGGTSS-----EEE-B-TTSSHHHH
T ss_pred HHHHHHHHHcCCCcEEEEECCCCCCHHHH
Confidence 34444544567778899999999999984
No 331
>KOG2264|consensus
Probab=63.38 E-value=62 Score=36.47 Aligned_cols=70 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 681 IKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNT 750 (932)
Q Consensus 681 i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~ 750 (932)
+.+...-+.....++.+++.+.+++..++.++..+++++++.+...+.++..++..++..+..+.++...
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 332
>PRK00846 hypothetical protein; Provisional
Probab=63.32 E-value=72 Score=26.12 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q psy16994 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSP 861 (932)
Q Consensus 807 ~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~ 861 (932)
..+.+.+..|...+.+....+..|...+......|..|..++..+...+.+....
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 333
>PF15294 Leu_zip: Leucine zipper
Probab=63.21 E-value=2e+02 Score=30.11 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 593 RRLLTVRSAELEYELEQ-RDYLIAVKTDGAEELQEKLDYMENKFQE-----ESLVYERLMSEKENLISQLKADLESNRAE 666 (932)
Q Consensus 593 ~~~l~~~l~~l~~~l~~-~~~~l~~l~~~~~~l~~~l~~l~~~l~~-----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 666 (932)
.......+......+.+ ....+.+..-...++..-+..+...+.. +.+......--++.-+...+...-.+...
T Consensus 3 r~kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~d 82 (278)
T PF15294_consen 3 RSKREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTD 82 (278)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH----------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 667 SNQSAHD-EQALQKEIKNLGSLLVD----------KDKTIGD-----LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKC 730 (932)
Q Consensus 667 l~~~~~~-~~~l~~~i~~l~~~l~~----------l~~~~~~-----l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~ 730 (932)
+..+... +-+.-.+.+..+-.... +.-.... +..++..+..+...++..+..++......-.+.
T Consensus 83 iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek 162 (278)
T PF15294_consen 83 ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEK 162 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHh
Q psy16994 731 EELTQQVTKLEADCQSYLN---------TIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK--PSLEASA 799 (932)
Q Consensus 731 ~~l~~~l~~l~~~l~~l~~---------~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~--~~L~~~l 799 (932)
..++..+.+++........ ++..++..+..++.++...........+.+...+......+.. ..|..--
T Consensus 163 ~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~ae 242 (278)
T PF15294_consen 163 SKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAE 242 (278)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcch
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 800 ATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKL 834 (932)
Q Consensus 800 ~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l 834 (932)
.++...... ...|..++.-+.....++.+|..++
T Consensus 243 keLekKfqq-T~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 243 KELEKKFQQ-TAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred hhHHHHhCc-cHHHHHhHHHHHhccHHHHHHHHHh
No 334
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.13 E-value=48 Score=26.52 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q psy16994 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQR 859 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~ 859 (932)
.+.+.+.+|...+.+....+..|+..+......|..|..++..+...+....
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 335
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.01 E-value=3.4 Score=41.20 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
..+++.++ .+..+++.|+.||||||
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~ 34 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTF 34 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTH
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHH
No 336
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.87 E-value=91 Score=27.44 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 699 KAKIHKYEKYYAVMKEDRKTKEKDIAEL--KTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764 (932)
Q Consensus 699 ~~~l~~le~~~~~l~~~l~~l~~~l~~l--~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~ 764 (932)
...+..+...+......+..++.++..+ ...+..++-.+.++..++..+..+++.+.....-+-++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 337
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=62.70 E-value=26 Score=29.16 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhc--------CCCCceeeec--ccccCCCcEEE--------------ecceEEEecCHHHHHHH
Q psy16994 118 AELFQNIVHNMLERYL--------NGEDALLFSF--GTTNSGKTFTI--------------QDLTYVNVHSCEEAYRV 171 (932)
Q Consensus 118 ~~v~~~~~~~~v~~~~--------~g~~~~i~~~--G~tgsGKt~t~--------------~Gl~~~~v~s~~~~~~~ 171 (932)
.+-|..+|.++|-++- .||.+++.++ |..+.|-+|.+ +|.+|+...+--|.+.+
T Consensus 5 a~q~R~~V~DLVm~LqALa~~Le~rG~~AsCYtC~dG~~~~~ASFmv~lg~~HliRFLVSd~GIsW~E~rd~rEL~KL 82 (105)
T PF08844_consen 5 AEQYRSFVQDLVMSLQALAIVLERRGYLASCYTCGDGRDMNSASFMVSLGDNHLIRFLVSDYGISWTEMRDDRELMKL 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCceeEEEecCCCCCCCceeEEEEcCCCcEEEEEEecCCeeEEEecCchHHHhh
No 338
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.61 E-value=2.5 Score=45.58 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
...++..++.+....+++ |+||||||+++
T Consensus 137 ~~~~L~~~v~~~~~ilI~-G~tGSGKTTll 165 (319)
T PRK13894 137 QREAIIAAVRAHRNILVI-GGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHHcCCeEEEE-CCCCCCHHHHH
No 339
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=62.49 E-value=1e+02 Score=26.65 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhccCCC
Q psy16994 800 ATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPS 879 (932)
Q Consensus 800 ~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~~~~ 879 (932)
..+-.++..|..+..-|+.-+-+......+|...+...+..+..+..+++.+.-..+.+...+..|..++.....-....
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~~~k~ 80 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQKSKKK 80 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q ss_pred CCCCCCCCC
Q psy16994 880 GEDTDDPDF 888 (932)
Q Consensus 880 ~~~~~~~~~ 888 (932)
......+..
T Consensus 81 ~~~~~~~~~ 89 (102)
T PF10205_consen 81 KKSKKSNSQ 89 (102)
T ss_pred cccCCCccc
No 340
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.48 E-value=53 Score=26.26 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 697 DLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYL 748 (932)
Q Consensus 697 ~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~ 748 (932)
.++..+.+++..+.-....++++...+......+..++..+..+..++..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 341
>KOG0735|consensus
Probab=62.47 E-value=4.3 Score=47.08 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec-------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEE
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD-------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFS 198 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~ 198 (932)
++...+.-.....|+.||++|+|||| +.| ++.+.|+.++=.-.++-....+-+-.... +.|-+-+..|.
T Consensus 691 ~if~~~plr~~~giLLyGppGcGKT~-la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~r--A~~a~PCiLFF 766 (952)
T KOG0735|consen 691 QIFANCPLRLRTGILLYGPPGCGKTL-LASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFER--AQSAKPCILFF 766 (952)
T ss_pred HHHhhCCcccccceEEECCCCCcHHH-HHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHH--hhccCCeEEEe
No 342
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=62.34 E-value=1.6e+02 Score=28.87 Aligned_cols=114 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHH
Q psy16994 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAK 569 (932)
Q Consensus 490 ~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 569 (932)
+.-|.-.+.-++.|+.++.+.+.-+......+...+................+..+. .-+...+..+....
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~---------~~l~~a~~nl~~a~ 129 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLK---------AALKAAQANLANAE 129 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDY 612 (932)
Q Consensus 570 ~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~ 612 (932)
.-....+.++.+-..-+...+..++.|...+.....+++..+.
T Consensus 130 ~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 130 QVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 343
>PRK06547 hypothetical protein; Provisional
Probab=62.31 E-value=4.3 Score=39.41 Aligned_cols=29 Identities=28% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 124 IVHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 124 ~~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.+..++..+..+.--.|..+|++|||||+
T Consensus 2 ~~~~~~~~~~~~~~~~i~i~G~~GsGKTt 30 (172)
T PRK06547 2 LVALIAARLCGGGMITVLIDGRSGSGKTT 30 (172)
T ss_pred hHHHHHHHhhcCCCEEEEEECCCCCCHHH
No 344
>PRK00736 hypothetical protein; Provisional
Probab=62.18 E-value=60 Score=25.89 Aligned_cols=52 Identities=8% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q psy16994 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQR 859 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~ 859 (932)
.+.+.+.+|...+.+....+.+|...+......|..|..++..+...+....
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 345
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=61.98 E-value=3.2 Score=39.97 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
..++..+..|.+ ++..|+||+|||+
T Consensus 5 ~~~~~~i~~~~~--~li~aptGsGKT~ 29 (169)
T PF00270_consen 5 QEAIEAIISGKN--VLISAPTGSGKTL 29 (169)
T ss_dssp HHHHHHHHTTSE--EEEECSTTSSHHH
T ss_pred HHHHHHHHcCCC--EEEECCCCCccHH
No 346
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.95 E-value=96 Score=27.29 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 706 EKYYAVMKEDRKTKEKDIAELKTKCEEL--TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKI 771 (932)
Q Consensus 706 e~~~~~l~~~l~~l~~~l~~l~~~~~~l--~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~ 771 (932)
...+..+...+......+..++..+..+ .+++..++..+.+++.++..+...+..+.....-++..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 347
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=61.88 E-value=2.1 Score=43.80 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 122 ~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..-+..+...+..|.+.+++-||+.|+|||+.|
T Consensus 5 ~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 5 EKELEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
No 348
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=61.85 E-value=1.5 Score=46.48 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCC---CceeeecccccCCCcEEE
Q psy16994 121 FQNIVHNMLERYLNGE---DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 121 ~~~~~~~~v~~~~~g~---~~~i~~~G~tgsGKt~t~ 154 (932)
+...+.+.+..++... .+.|+-.|+||||||++|
T Consensus 108 ~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 108 ESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred CchhhHHHHHHHHhhccccceEEEEECCCccccchHH
No 349
>KOG1103|consensus
Probab=61.71 E-value=2.2e+02 Score=30.10 Aligned_cols=194 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 528 NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607 (932)
Q Consensus 528 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l 607 (932)
+..+..-+...+.-.+..- ..+..++.....+ +.+++...+.--....+-..-...|+.+.+.++.++
T Consensus 88 l~iL~~mM~qcKnmQe~~~---------s~LaAaE~khrKl---i~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 88 LDILDKMMAQCKNMQENAA---------SLLAAAEKKHRKL---IKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred hHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy16994 608 EQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGS- 686 (932)
Q Consensus 608 ~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~- 686 (932)
+-...+....+.....+...+..-+...+.+..-+-.+.........+......++.-++..-.........+...-.+
T Consensus 156 EFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERer 235 (561)
T KOG1103|consen 156 EFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERER 235 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhh
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 687 ----------LLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEEL 733 (932)
Q Consensus 687 ----------~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l 733 (932)
.+.++..+...+..++...+....-++.+...+..-++.+......+
T Consensus 236 glqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 236 GLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
No 350
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=61.55 E-value=1.1e+02 Score=36.59 Aligned_cols=415 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHhh-------------------hHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q psy16994 480 AQHKLKIQNLKQELSEL-----------EAKYK-------------------SLSEEHEDMSGKLKELTRENRDLVTKNK 529 (932)
Q Consensus 480 ~~~k~~i~~l~~~l~~l-----------~~~l~-------------------~l~~~l~~~~~~l~~l~~~~~~l~~~~~ 529 (932)
..+...|..+..++..| ...+. .|...+..+...+..+......-..++.
T Consensus 29 ~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~ 108 (619)
T PF03999_consen 29 ARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFK 108 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 530 ELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAK--EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607 (932)
Q Consensus 530 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l 607 (932)
.+..++..+...+.... ..+......-..+- ..+..+...+..++.+...-...+..+...+..+-..+
T Consensus 109 ~L~~~~~~l~~~Lg~~~---------~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L 179 (619)
T PF03999_consen 109 ELQEQLEQLCEELGELP---------LCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEEL 179 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhccccccc---------cCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 608 EQRDY----------------LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSA 671 (932)
Q Consensus 608 ~~~~~----------------~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~ 671 (932)
..--. ...-....+..+...+..+...... ....+..+...+..|...+..-..+....
T Consensus 180 ~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~----r~~~~~~l~~~i~~LW~~L~~~~ee~~~F- 254 (619)
T PF03999_consen 180 GIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEE----REEKLQELREKIEELWNRLDVPEEEREAF- 254 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 672 HDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY-AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNT 750 (932)
Q Consensus 672 ~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~-~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~ 750 (932)
+...-.-....+..++.++..|+......-..+ ...+.+|.++-..+---..+.........+... +.-
T Consensus 255 -----~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-----E~l 324 (619)
T PF03999_consen 255 -----LEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-----EEL 324 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----hhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-----HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 751 IKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK----PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV 826 (932)
Q Consensus 751 l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~----~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~ 826 (932)
+..++.++..++..... .+.+-..+......... +....+=.-+...-..|..+-..-+.=...+-+.
T Consensus 325 L~~hE~Ei~~Lk~~~~~--------~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkEEk~rk~i~k~lPkl 396 (619)
T PF03999_consen 325 LELHEEEIERLKEEYES--------RKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGHLLKEEKERKRIQKKLPKL 396 (619)
T ss_dssp ----------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHHhHH------------HHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHhhccCCCCCCCCCCCCCcc
Q psy16994 827 VRDLQLKLLQKGEM------------INNLK---AQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPR 891 (932)
Q Consensus 827 ~~~l~~~l~~~~~~------------~~~L~---~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~~~~~~~~~~~~~~~~ 891 (932)
..+|...+...+.. ++-+. .+.+............-..-......-..-....+.....+-...+
T Consensus 397 e~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~s~~s~~~~~~~~~~ 476 (619)
T PF03999_consen 397 EEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTEQEMPYGSKPSPAPSTPSKRR 476 (619)
T ss_dssp HHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCccccCCCCCCccccCCCCCCccc
Q ss_pred ccccchhhhhhccCCCccccccccccccccccccc
Q psy16994 892 SRCKSTSKKRQLKKPSTHLNSTAGLAENVNLITPR 926 (932)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (932)
.....++.+...........+..+.+++......+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 511 (619)
T PF03999_consen 477 SSSGLTSNTPSSRRTPNTTNPSTSSSNSSIRSSTG 511 (619)
T ss_dssp -----------------------------------
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccCCCccCCCCCC
No 351
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=61.40 E-value=1.5e+02 Score=28.19 Aligned_cols=131 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy16994 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYA----VMKEDRKTKEKDIAELKT 728 (932)
Q Consensus 653 ~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~----~l~~~l~~l~~~l~~l~~ 728 (932)
+..+--.+-..-..+..+.........++..+......+......-.......+..+. .++.+..++...+..++.
T Consensus 24 v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~ 103 (158)
T PF09744_consen 24 VKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEE 103 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 729 KCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783 (932)
Q Consensus 729 ~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el 783 (932)
....+...+..+......+...-..+..+...+.....+++..+.+-++....++
T Consensus 104 e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 104 ENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred HHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 352
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=61.25 E-value=1.7e+02 Score=28.74 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 594 RLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673 (932)
Q Consensus 594 ~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~ 673 (932)
...+.-+...+.-++.++.++.+.+.-+......+...+..... ..........++..+..-+......+.....-
T Consensus 56 ~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~a----A~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~ 131 (188)
T PF05335_consen 56 KAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQA----AQRAAQQAQQQLETLKAALKAAQANLANAEQV 131 (188)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 674 EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714 (932)
Q Consensus 674 ~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~ 714 (932)
......++.+-..-+...+..++.|...+.....++...+.
T Consensus 132 a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 132 AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 353
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.94 E-value=2e+02 Score=29.31 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 535 VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614 (932)
Q Consensus 535 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l 614 (932)
...+...++.++ .-...+...+.+.+..+..+...+..+-.....++.++..+......++......-..=
T Consensus 12 ~a~~~~~~dk~E---------Dp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 12 KANINELLDKAE---------DPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred HHHHHHHHHhhc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy16994 615 AVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD---- 690 (932)
Q Consensus 615 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~---- 690 (932)
. +.-....-.....++..... +...+.........++..+..+...+..+......+.......+..-.-
T Consensus 83 ~--E~LAr~al~~~~~le~~~~~----~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~ 156 (225)
T COG1842 83 N--EDLAREALEEKQSLEDLAKA----LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSL 156 (225)
T ss_pred C--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 -------KDKTIGDLKAKIHKYEKYYAVMK----EDRKTKEKDIAELKTKCEELTQQVTKLEADC 744 (932)
Q Consensus 691 -------l~~~~~~l~~~l~~le~~~~~l~----~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l 744 (932)
....+..++..+...+....... ..-..+..++..+.. -......+..+...+
T Consensus 157 ~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~-~~~v~~~La~lka~~ 220 (225)
T COG1842 157 GGGSSSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFAQAGA-QSAVDSRLAALKARM 220 (225)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcc-cccHHHHHHHHHHhh
No 354
>COG5283 Phage-related tail protein [Function unknown]
Probab=60.74 E-value=4.5e+02 Score=33.39 Aligned_cols=277 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHH
Q psy16994 482 HKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYL 561 (932)
Q Consensus 482 ~k~~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l 561 (932)
++..|..-......++.+...-..-+..-...+..+...++....-+..+..++.++.......+ ..++.+
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~---------kay~e~ 97 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASK---------KAYQEY 97 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q psy16994 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLV 641 (932)
Q Consensus 562 ~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~ 641 (932)
..+.-..+..+..+..++.....++.--+..+..+..++..+..-+......+......+......+..+.+.+......
T Consensus 98 ~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~esf~~q~~a 177 (1213)
T COG5283 98 NAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEA 177 (1213)
T ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q psy16994 642 YERLMSEKENLISQLKADLESNRAESNQSAHD-EQALQKEIKNLGSLLVDKD----------KTIGDLKAKIHKYEKYYA 710 (932)
Q Consensus 642 ~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~-~~~l~~~i~~l~~~l~~l~----------~~~~~l~~~l~~le~~~~ 710 (932)
+..++.....--..+..-+.+.+..+.+.... ++.+.....+.-.....+- ....-+...+......+.
T Consensus 178 ln~q~~~t~k~~~~~~~~l~e~qq~~~q~~~a~~~~L~~s~~q~~~s~~qlsk~~e~~~~~aG~~~~~~a~~~~s~a~i~ 257 (1213)
T COG5283 178 LNKQLERTKKVADALTYVLDEAQQKLSQALSARLERLQESRTQMSQSSGQLGKRLETDKAGAGALGLLGAALAGSFAAIG 257 (1213)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHhhhcchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 711 VMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767 (932)
Q Consensus 711 ~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~ 767 (932)
..-.....+..++..--.++...++..........++...+..+...+..--..+..
T Consensus 258 aAv~~~~~mn~~l~~~~kq~k~~rdn~~k~t~q~~~m~~a~~~ta~~~kd~~~~lsk 314 (1213)
T COG5283 258 AAVRRTAQMNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQETAEHIKDSGRELSK 314 (1213)
T ss_pred HHHHHHHHHhhhhhhhHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHcchhhhhHHH
No 355
>PF12846 AAA_10: AAA-like domain
Probab=60.43 E-value=2.1 Score=45.94 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=0.0
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
|..++.+|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
No 356
>PRK10536 hypothetical protein; Provisional
Probab=60.36 E-value=4.3 Score=41.83 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=0.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.|.|..|.+-+..|..+...+.. +..++..|++||||||
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~----------~~lV~i~G~aGTGKT~ 89 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIES----------KQLIFATGEAGCGKTW 89 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhc----------CCeEEEECCCCCCHHH
No 357
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.16 E-value=86 Score=30.73 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH-hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHED-MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKS 563 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~-~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~ 563 (932)
+.-.|+.+|.+|+..+...+..... -...-....--..++++-+.-.+.++..+........ ..+..+..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~---------~~l~~v~~ 167 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSG---------KNLKSVRE 167 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCC---------CCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 564 LLDEAKEEFKEQTTEIEQLRSEVEKLS 590 (932)
Q Consensus 564 ~l~~~~~~l~~l~~~i~~l~~~l~~l~ 590 (932)
.++.++.++..|+.-+..-+.+++.|+
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 358
>PRK04325 hypothetical protein; Provisional
Probab=60.14 E-value=83 Score=25.60 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 717 KTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767 (932)
Q Consensus 717 ~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~ 767 (932)
..++..+.+|+.++.-.+..+..+...+.....+++.+..++..+..++..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 359
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=60.10 E-value=13 Score=36.88 Aligned_cols=57 Identities=14% Similarity=0.023 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEE
Q psy16994 139 LLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFD 218 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~ 218 (932)
.|...|.||+|||. +++.-..............-++........+.. ..++
T Consensus 2 ~i~lvG~~g~GKSs------------------l~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-----------~~i~ 52 (196)
T cd01852 2 RLVLVGKTGAGKSA------------------TGNTILGREVFESKLSASSVTKTCQKESAVWDG-----------RRVN 52 (196)
T ss_pred EEEEECCCCCCHHH------------------HHHHhhCCCccccccCCCCcccccceeeEEECC-----------eEEE
Q ss_pred EEeCCC
Q psy16994 219 ICDLAG 224 (932)
Q Consensus 219 ~vDLag 224 (932)
|||++|
T Consensus 53 viDTPG 58 (196)
T cd01852 53 VIDTPG 58 (196)
T ss_pred EEECcC
No 360
>KOG0090|consensus
Probab=59.83 E-value=2.9 Score=41.02 Aligned_cols=53 Identities=28% Similarity=0.374 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEE----EecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeE
Q psy16994 139 LLFSFGTTNSGKTFT----IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t----~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~ 214 (932)
+|+-.|+++||||.. +.|...-.|+|.++-...+..|..+
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~------------------------------------ 83 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSEN------------------------------------ 83 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcc------------------------------------
Q ss_pred EEEEEEeCCCCcccc
Q psy16994 215 SSFDICDLAGAERQK 229 (932)
Q Consensus 215 s~l~~vDLagse~~~ 229 (932)
+++||+.|-.|++
T Consensus 84 --~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 84 --VTLVDLPGHSRLR 96 (238)
T ss_pred --eEEEeCCCcHHHH
No 361
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=59.79 E-value=4.1 Score=44.67 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 122 ~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+.++..+...+-.|....++-||++|+|||+++
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHH
No 362
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=59.72 E-value=99 Score=25.51 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy16994 581 QLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQ 655 (932)
Q Consensus 581 ~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~ 655 (932)
.+..-++.++.+++.+..+....+..-.+.+.++..--.++..++..+-.++.........++.++..+..+++.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 363
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=59.63 E-value=2.1e+02 Score=29.31 Aligned_cols=219 Identities=9% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 508 EDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587 (932)
Q Consensus 508 ~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~ 587 (932)
+.+.-.+..--..+......|+.++.++.........+. .+...--..+..--...-.-..-.=.......
T Consensus 3 e~~dprVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l---------~e~~~kL~~~~kkLg~~I~karPYyea~~~a~ 73 (239)
T PF05276_consen 3 EELDPRVQEELEKLNQATDEINRLENELDEARATFRRLL---------SESTKKLNELAKKLGSCIEKARPYYEARRKAK 73 (239)
T ss_pred cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQ--EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRA 665 (932)
Q Consensus 588 ~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~--~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 665 (932)
.+.......-...+....-+......+.-++..+..-. .--....+.+.. ....+.+.+.+.............
T Consensus 74 ~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~----A~~kVneAE~ek~~ae~eH~~~~~ 149 (239)
T PF05276_consen 74 EAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNH----ATQKVNEAEQEKTRAEREHQRRAR 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 666 ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTK 739 (932)
Q Consensus 666 ~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~ 739 (932)
........+..++..+...-..-.-.-.........+......+..+...+...+......-..+..+..+|..
T Consensus 150 ~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 150 IYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 364
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.57 E-value=82 Score=24.50 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 683 NLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEAD 743 (932)
Q Consensus 683 ~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~ 743 (932)
+++..++.=-.....+..++..+..........+++.+.....+..++..++.++.+++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 365
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=59.44 E-value=2.4 Score=47.03 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCce-----eeecccccCCCcE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDAL-----LFSFGTTNSGKTF 152 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~-----i~~~G~tgsGKt~ 152 (932)
+.|+.|.+-+.--..+...+..|+...-+-..-+. |+-||++|+|||+
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~ 171 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTL 171 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHH
No 366
>KOG3091|consensus
Probab=59.29 E-value=3.1e+02 Score=31.02 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 536 AQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA 615 (932)
Q Consensus 536 ~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~ 615 (932)
..|..++.--. .........++.+.+.+.+++..-...-.+|.+++.+..+|..++-.+--.++-++..=-
T Consensus 337 ~dL~~R~K~Q~---------q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~ 407 (508)
T KOG3091|consen 337 EDLRQRLKVQD---------QEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGY 407 (508)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 616 VKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD--LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK 693 (932)
Q Consensus 616 ~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~--l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~ 693 (932)
.+...-++++.++..+..++.. -.+-...+..-.+.++.+ -.......-.......+..+.+..-.+.+..+-.
T Consensus 408 ~L~~~EE~Lr~Kldtll~~ln~----Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~ 483 (508)
T KOG3091|consen 408 ALTPDEEELRAKLDTLLAQLNA----PNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVN 483 (508)
T ss_pred cCCccHHHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-HHHHHHHHHHHH
Q psy16994 694 TIGDLKAKI-HKYEKYYAVMKE 714 (932)
Q Consensus 694 ~~~~l~~~l-~~le~~~~~l~~ 714 (932)
-+....+.+ ..+.+.+...+.
T Consensus 484 Ilk~d~edi~~~l~E~~~~~~~ 505 (508)
T KOG3091|consen 484 ILKGDQEDIKHQLIEDLEICRK 505 (508)
T ss_pred HHHhHHHHHHHHHHhhHHHHhh
No 367
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=59.27 E-value=3.3 Score=45.09 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
|.|+.|-+ ++....-++..+.+..-+.|+.+|.+||||||++
T Consensus 14 ~pf~~ivG--------q~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 14 FPFTAIVG--------QEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCHHHHhC--------hHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHH
No 368
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.13 E-value=3.4e+02 Score=31.56 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 638 ESLVYERLMSEKENLISQLKADL-ESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDR 716 (932)
Q Consensus 638 ~~~~~~~~~~~l~~~~~~l~~~l-~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l 716 (932)
............+........+. ..+......++.++...+.++...+..+..-...+..-...+...+..+......+
T Consensus 34 Ae~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L 113 (514)
T TIGR03319 34 AKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKEL 113 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 717 KTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN---MENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785 (932)
Q Consensus 717 ~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~---l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~ 785 (932)
...+.++..+..+...+..+....-.++..+..+-.. +..-...++.+....++.++.....--.....
T Consensus 114 ~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 185 (514)
T TIGR03319 114 SNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAK 185 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 369
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=59.01 E-value=2.8e+02 Score=30.56 Aligned_cols=158 Identities=10% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16994 496 LEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575 (932)
Q Consensus 496 l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l 575 (932)
.+.-+...+.-+..+ ..........-++.++..++.++...+..+...+.......-..........+..++.++..+
T Consensus 149 an~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~ 226 (362)
T TIGR01010 149 NQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRV 226 (362)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16994 576 TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTD-GAEELQEKLDYMENKFQEESLVYERLMSEKENLIS 654 (932)
Q Consensus 576 ~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~-~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~ 654 (932)
+.++..+......-.-.+..++.++..++..+.....++..... .+.....++..++.+.+. .+.....+...++
T Consensus 227 ~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~----a~~~y~~~l~r~~ 302 (362)
T TIGR01010 227 QAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNEL----AQQQLKAALTSLQ 302 (362)
T ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHHH
Q psy16994 655 QLKAD 659 (932)
Q Consensus 655 ~l~~~ 659 (932)
+.+.+
T Consensus 303 ~a~~~ 307 (362)
T TIGR01010 303 QTRVE 307 (362)
T ss_pred HHHHH
No 370
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.66 E-value=1.3e+02 Score=33.89 Aligned_cols=81 Identities=11% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD-KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIA 724 (932)
Q Consensus 646 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~-l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~ 724 (932)
+..+-.++.+++.++..+..+.+.+..+.+.+++.......++.. +.....++..+...+..++..+...+.++..++.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q psy16994 725 EL 726 (932)
Q Consensus 725 ~l 726 (932)
.+
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 371
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=58.64 E-value=2.9 Score=38.26 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-||++|+|||+
T Consensus 1 ill~G~~G~GKT~ 13 (132)
T PF00004_consen 1 ILLHGPPGTGKTT 13 (132)
T ss_dssp EEEESSTTSSHHH
T ss_pred CEEECcCCCCeeH
No 372
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=58.54 E-value=2.9 Score=39.08 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|++|||||+
T Consensus 1 lii~~G~pgsGKSt 14 (143)
T PF13671_consen 1 LIILCGPPGSGKST 14 (143)
T ss_dssp EEEEEESTTSSHHH
T ss_pred CEEEECCCCCCHHH
No 373
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=58.38 E-value=2.9 Score=44.71 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 121 FQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 121 ~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
|......++..++. ..+.|+-.|+||||||++|
T Consensus 117 ~~~~~~~~L~~~v~-~~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 117 MTAAQRDVLREAVL-ARKNILVVGGTGSGKTTLA 149 (299)
T ss_pred CCHHHHHHHHHHHH-cCCeEEEECCCCCCHHHHH
No 374
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.26 E-value=5.4 Score=44.18 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCC-------CceeeecccccCCCcEEE
Q psy16994 116 TQAELFQNIVHNMLERYLNGE-------DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 116 ~q~~v~~~~~~~~v~~~~~g~-------~~~i~~~G~tgsGKt~t~ 154 (932)
+...++..+..-+...+.... ...|+.+|+||+|||+|+
T Consensus 146 ~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 146 DYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHH
No 375
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.23 E-value=34 Score=37.80 Aligned_cols=105 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy16994 647 SEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH----KYEKYYAVMKEDRKTKEKD 722 (932)
Q Consensus 647 ~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~----~le~~~~~l~~~l~~l~~~ 722 (932)
......+..+..........+..+...+.++..++..+.....+....+..+..... .+...+.++...+..++..
T Consensus 80 E~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~ 159 (370)
T PF02994_consen 80 ENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDR 159 (370)
T ss_dssp --------------------------------------H-------------------------HHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 723 IAELKTKCEELTQQVTKLEADCQSYLNTI 751 (932)
Q Consensus 723 l~~l~~~~~~l~~~l~~l~~~l~~l~~~l 751 (932)
+..+...+..+...+..+...+..++...
T Consensus 160 ~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 160 IEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 376
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.97 E-value=1.3e+02 Score=26.19 Aligned_cols=85 Identities=27% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q psy16994 647 SEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD---------------KDKTIGDLKAKIHKYEKYYAV 711 (932)
Q Consensus 647 ~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~---------------l~~~~~~l~~~l~~le~~~~~ 711 (932)
+.....+..+..++..+...+..+...+..+..-+.++..--.. ...-+..+...+..++..+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16994 712 MKEDRKTKEKDIAELKTKCE 731 (932)
Q Consensus 712 l~~~l~~l~~~l~~l~~~~~ 731 (932)
+...+..+..++..+...+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 377
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.92 E-value=1.3e+02 Score=26.37 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy16994 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK---YYAVMKEDRKTKEKD 722 (932)
Q Consensus 646 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~---~~~~l~~~l~~l~~~ 722 (932)
+..+....+.....+..-. .....-..+-.+..+...+...++.+..+...+..++..+.. ....+..+...+..+
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16994 723 IAELKTKCEELTQQVTKL 740 (932)
Q Consensus 723 l~~l~~~~~~l~~~l~~l 740 (932)
+..+..++..++.++..+
T Consensus 83 i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 83 IKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 378
>PHA03011 hypothetical protein; Provisional
Probab=57.88 E-value=63 Score=27.27 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy16994 796 EASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858 (932)
Q Consensus 796 ~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~ 858 (932)
...+..+......+..++..|..++.-..+.+.++..-+.+..+.+..|.+++.++.++....
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
No 379
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=57.77 E-value=4.8 Score=44.97 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred eecceecCCCCChHHHHHHHHHH-----HHHHhcCCCCceeeecccccCCCcE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHN-----MLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~-----~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
++|+.|.+.+.--.++...+..| ++..+--.....|+-||++|+|||+
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~ 194 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTM 194 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHH
No 380
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=57.77 E-value=1.3e+02 Score=27.33 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------
Q psy16994 737 VTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK------------------------ 792 (932)
Q Consensus 737 l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~------------------------ 792 (932)
+..+...+..++.+++.+...+..+...+.+ +......+..+... ..
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e--------~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~ 71 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAE--------LETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVL 71 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEE
Q ss_pred ----------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 793 ----------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQK 837 (932)
Q Consensus 793 ----------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~ 837 (932)
..+.+.+..+......+...+..+...+.....++..+...+.+.
T Consensus 72 v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~~ 126 (126)
T TIGR00293 72 VSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQL 126 (126)
T ss_pred EEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 381
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.73 E-value=1.9e+02 Score=28.20 Aligned_cols=96 Identities=10% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 658 ADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737 (932)
Q Consensus 658 ~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l 737 (932)
..+..-...+...+-....++.+...++..+...+.....|+..+.-...+-............+...|..+....+.++
T Consensus 91 ~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL 170 (192)
T PF11180_consen 91 RDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQL 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16994 738 TKLEADCQSYLNTIKN 753 (932)
Q Consensus 738 ~~l~~~l~~l~~~l~~ 753 (932)
..++..+..++.+.+.
T Consensus 171 ~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 171 RQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHhcC
No 382
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=57.69 E-value=2.3e+02 Score=29.13 Aligned_cols=238 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 509 DMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588 (932)
Q Consensus 509 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~ 588 (932)
........+......+...+..+............... .....+...........................
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 71 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVA---------ANADEIAATAQSAAEAAEEGREAVEDAITAMDQ 71 (262)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------------------HHHHHHHHHHHHhhHHHHHH
Q psy16994 589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEEL------------------------QEKLDYMENKFQEESLVYER 644 (932)
Q Consensus 589 l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l------------------------~~~l~~l~~~l~~~~~~~~~ 644 (932)
....+..+...+..+.............+....... -..+..+-.+..........
T Consensus 72 ~~~~~~~~~~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~ 151 (262)
T smart00283 72 IREVVEEAVSAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIES 151 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 645 LMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIA 724 (932)
Q Consensus 645 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~ 724 (932)
.+.............+......+......+......+......+..+...+..+.......-............+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 231 (262)
T smart00283 152 LIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQ 231 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 725 ELKTKCEELTQQVTKLEADCQSYLNTIKNME 755 (932)
Q Consensus 725 ~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~ 755 (932)
.+.............+......+...+..++
T Consensus 232 ~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 262 (262)
T smart00283 232 ETAAMSEEISAAAEELSGLAEELKELVEQFK 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=57.66 E-value=3.5 Score=40.70 Aligned_cols=29 Identities=24% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..+++..++.. ...++-.|++|||||+++
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
No 384
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=57.57 E-value=5.7 Score=42.84 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHhcCCCCce--eeecccccCCCcE
Q psy16994 111 YGPHTTQAELFQNIVHNMLERYLNGEDAL--LFSFGTTNSGKTF 152 (932)
Q Consensus 111 ~~~~~~q~~v~~~~~~~~v~~~~~g~~~~--i~~~G~tgsGKt~ 152 (932)
|.....|..+... +..++.....+.... ++-||++|+|||+
T Consensus 3 ~~~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~ 45 (305)
T TIGR00635 3 LAEFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTT 45 (305)
T ss_pred HHHHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHH
No 385
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.47 E-value=2.4e+02 Score=29.27 Aligned_cols=127 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy16994 621 AEELQEKLDYMENK-FQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD------EQALQKEIKNLGSLLVDKDK 693 (932)
Q Consensus 621 ~~~l~~~l~~l~~~-l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~------~~~l~~~i~~l~~~l~~l~~ 693 (932)
++.+-.-+..++.. +..+...--..+...-..+...+-.+.-++..+..+... ......+.+.....+.....
T Consensus 128 Le~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ 207 (269)
T PF05278_consen 128 LECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKE 207 (269)
T ss_pred HHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 694 TIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSY 747 (932)
Q Consensus 694 ~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l 747 (932)
+++....++...++++.+++..+.+....+.++..+...+.+.+..+..++...
T Consensus 208 ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 208 ELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 386
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=57.10 E-value=1.5e+02 Score=26.71 Aligned_cols=128 Identities=5% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q psy16994 607 LEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ------SAHDEQALQKE 680 (932)
Q Consensus 607 l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~------~~~~~~~l~~~ 680 (932)
.+.++..+...+.++......+..++..+.. ....+......+......+...+..... +..--.-+..+
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~----a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlk 78 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQAS----AEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLK 78 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 681 IKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738 (932)
Q Consensus 681 i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~ 738 (932)
+..+...+..-+..+...+..+..+..++...+.-+...............+.+..+.
T Consensus 79 vr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 79 VRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 387
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=56.89 E-value=2.6 Score=43.18 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHhcCCCCceeeecccccCCCcEEE
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
|..++.... ..+..|++|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
No 388
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=56.78 E-value=3.9 Score=47.18 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCC--ceeeecccccCCCcEEE
Q psy16994 125 VHNMLERYLNGED--ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 125 ~~~~v~~~~~g~~--~~i~~~G~tgsGKt~t~ 154 (932)
|...+...+.|.. ..++.+||+|+|||.||
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
No 389
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.69 E-value=2.3e+02 Score=29.29 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy16994 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGK--------------------------------------------- 534 (932)
Q Consensus 500 l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~--------------------------------------------- 534 (932)
++.++.++..+..++.+.+.-+..++.++..+...
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 535 VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTV 598 (932)
Q Consensus 535 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~ 598 (932)
+.-+..+.+.++ .+..+++.++......+..++.+++.++.+-.+|=+++.-++.
T Consensus 81 LpIVtsQRDRFR---------~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFR---------QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 390
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=56.68 E-value=1.7e+02 Score=27.33 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-------------------
Q psy16994 734 TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQL--K------------------- 792 (932)
Q Consensus 734 ~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~--~------------------- 792 (932)
..++.++...++-+..+++.+..++..+...+.+ +.....-+..++..-. +
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e--------~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~ 76 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISE--------LQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMD 76 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCc
Q ss_pred -------------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16994 793 -------------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINN 843 (932)
Q Consensus 793 -------------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~ 843 (932)
.+..+-++.+...+..|...+.++...++.+...+..+...+.+.......
T Consensus 77 kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 77 KVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred eEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 391
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.65 E-value=1.5e+02 Score=33.45 Aligned_cols=81 Identities=26% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLD-EAKEEFKEQTTEIEQLRSEVEKLSEE 592 (932)
Q Consensus 514 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~l~~l~~~i~~l~~~l~~l~~~ 592 (932)
+..+-..+.+++.++..+..+.+.+..+.+.++ .+...+..++. .+.....++..+..+++.++..+...
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy16994 593 RRLLTVRSAEL 603 (932)
Q Consensus 593 ~~~l~~~l~~l 603 (932)
+..+..++..+
T Consensus 132 l~~l~~~l~~~ 142 (472)
T TIGR03752 132 IDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHhhc
No 392
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.52 E-value=4 Score=42.71 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=0.0
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
+.|+..||||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
No 393
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=56.40 E-value=11 Score=37.97 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEE
Q psy16994 139 LLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFD 218 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~ 218 (932)
.|+.+|.||||||. +.+.-..............-.+.+......+.. -.++
T Consensus 2 ~IlllG~tGsGKSs------------------~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g-----------~~v~ 52 (212)
T PF04548_consen 2 RILLLGKTGSGKSS------------------LGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG-----------RQVT 52 (212)
T ss_dssp EEEEECSTTSSHHH------------------HHHHHHTSS-SS--TTTSS--SS-EEEEEEETT-----------EEEE
T ss_pred EEEEECCCCCCHHH------------------HHHHHhcccceeeccccCCcccccceeeeeecc-----------eEEE
Q ss_pred EEeCCC
Q psy16994 219 ICDLAG 224 (932)
Q Consensus 219 ~vDLag 224 (932)
|||+.|
T Consensus 53 VIDTPG 58 (212)
T PF04548_consen 53 VIDTPG 58 (212)
T ss_dssp EEE--S
T ss_pred EEeCCC
No 394
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=56.39 E-value=10 Score=45.21 Aligned_cols=298 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Q psy16994 558 VKYLKSLLDEAKEEFKEQTTEIEQL-----------RSEVE-------------------KLSEERRLLTVRSAELEYEL 607 (932)
Q Consensus 558 ~~~l~~~l~~~~~~l~~l~~~i~~l-----------~~~l~-------------------~l~~~~~~l~~~l~~l~~~l 607 (932)
.+......+.+...++....++..+ ...+. .+...+..+...++.+....
T Consensus 21 ~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~ 100 (619)
T PF03999_consen 21 VEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEK 100 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 608 EQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKE--NLISQLKADLESNRAESNQSAHDEQALQKEIKNLG 685 (932)
Q Consensus 608 ~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~--~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~ 685 (932)
.+-..++..+...+..+..++......+.. ....-..+- ..+..+...+..+..+...-...+..+...|..+-
T Consensus 101 ~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~----~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~ 176 (619)
T PF03999_consen 101 EERMQEFKELQEQLEQLCEELGELPLCLNP----FDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLM 176 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCcc----ccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 686 SLLVDKDKTIGDLKAKIHK----------YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755 (932)
Q Consensus 686 ~~l~~l~~~~~~l~~~l~~----------le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~ 755 (932)
..+..--. .......+.. -...+..+...+..+..........+..+...+..+...+..-..+....-
T Consensus 177 ~~L~~~~~-~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~ 255 (619)
T PF03999_consen 177 EELGIDPE-RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFL 255 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCcc-cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 756 NDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829 (932)
Q Consensus 756 ~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~ 829 (932)
..-..+....-. .++.++..+...... ..+..+|.++-...---.++......-+.....
T Consensus 256 ~~~~~ls~~~i~----------~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~---- 321 (619)
T PF03999_consen 256 EENSGLSLDTIE----------ALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT---- 321 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCcchHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch----
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHhhc
Q psy16994 830 LQLKLLQKGEMINNLKAQMEKSQQQQQQQRS--PLKGLENQMAKINID 875 (932)
Q Consensus 830 l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~--~l~~le~~l~~l~~~ 875 (932)
..-|...+..|..|+..++.....+..... .+-.-...|.....|
T Consensus 322 -E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D 368 (619)
T PF03999_consen 322 -EELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKD 368 (619)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 395
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=56.28 E-value=13 Score=38.55 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEE
Q psy16994 136 EDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMS 215 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s 215 (932)
....|+.+|.+|+|||. +-..........+..-....+.-..+...+.. .
T Consensus 30 ~~~~IllvG~tGvGKSS-------------------liNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------~ 79 (249)
T cd01853 30 FSLTILVLGKTGVGKSS-------------------TINSIFGERKAATSAFQSETLRVREVSGTVDG-----------F 79 (249)
T ss_pred CCeEEEEECCCCCcHHH-------------------HHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------e
Q ss_pred EEEEEeCCC
Q psy16994 216 SFDICDLAG 224 (932)
Q Consensus 216 ~l~~vDLag 224 (932)
+++|||++|
T Consensus 80 ~i~vIDTPG 88 (249)
T cd01853 80 KLNIIDTPG 88 (249)
T ss_pred EEEEEECCC
No 396
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.13 E-value=1.8e+02 Score=30.02 Aligned_cols=90 Identities=9% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q psy16994 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD------------------------------------------ 690 (932)
Q Consensus 653 ~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~------------------------------------------ 690 (932)
++.++.++..+..++.+...-+..++..+.........
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 ---KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742 (932)
Q Consensus 691 ---l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~ 742 (932)
+..+.+..+....++++++......+..++.++..++...-+|=+++.=++.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 397
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=56.05 E-value=14 Score=44.01 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCceeeecccccCCCcEEEec----------------------------------------------
Q psy16994 123 NIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------- 156 (932)
Q Consensus 123 ~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------- 156 (932)
..+.-+++.+-+|.+-.++.+ .||+|||||-+-
T Consensus 172 ~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~ 250 (875)
T COG4096 172 IAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIED 250 (875)
T ss_pred HHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeec
Q ss_pred -----ceEEEecCHHHHHHHHHhh-hhccccccccC
Q psy16994 157 -----LTYVNVHSCEEAYRVLRFG-KSHLSVAPTEL 186 (932)
Q Consensus 157 -----l~~~~v~s~~~~~~~l~~g-~~~r~~~~t~~ 186 (932)
-+.|.|.++..+...+..- ...|+++...+
T Consensus 251 ~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 251 KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred ccCCcceeEEEeehHHHHhhhhccccccccCCCCce
No 398
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=56.01 E-value=2.1e+02 Score=28.05 Aligned_cols=169 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q psy16994 511 SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYL---------KSLLDEAKEEFKEQTTEIEQ 581 (932)
Q Consensus 511 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l---------~~~l~~~~~~l~~l~~~i~~ 581 (932)
+..++...........-+..++..+..++....+++ ..+..- ...-......++.+-..+++
T Consensus 1 rrrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele---------~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeE 71 (182)
T PF15035_consen 1 RRRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELE---------QQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEE 71 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhcccCcCcccccccccccCcccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 582 LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE 661 (932)
Q Consensus 582 l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~ 661 (932)
-+.....|..-..-|..+++.....-..+...+..+......+..++..-+.........+..-+..-...+-.|-.++.
T Consensus 72 EqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~ 151 (182)
T PF15035_consen 72 EQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVV 151 (182)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 662 SNRAESNQSAHDEQALQKEIKNLGSLLVDK 691 (932)
Q Consensus 662 ~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l 691 (932)
.+.....++... .+..+..+..++...
T Consensus 152 ~lRr~f~elr~~---TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 152 ALRRQFAELRTA---TERDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHHHHHH---HHhhHHHHHHHHHHH
No 399
>PRK00736 hypothetical protein; Provisional
Probab=55.92 E-value=99 Score=24.68 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhccCCCCCCCCCC
Q psy16994 823 RHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDP 886 (932)
Q Consensus 823 ~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~~~~~~~~~~~ 886 (932)
....+.+|+.++.-.+..+..|...+.+.+..+..+...+..|..++.....+-.+.+.+...|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~~~~~~~~~~PP 66 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQAAPDVPVTKPP 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCcC
No 400
>KOG1882|consensus
Probab=55.71 E-value=16 Score=36.31 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred ccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCC
Q psy16994 187 NHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGA 225 (932)
Q Consensus 187 n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLags 225 (932)
...+|.-||||++..+......+.....-+.+|+||..+
T Consensus 211 hpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~ 249 (293)
T KOG1882|consen 211 HPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSG 249 (293)
T ss_pred CccccccceeeeeeecccccCCCccceeeeeEEEecCCC
No 401
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.58 E-value=1.6e+02 Score=26.64 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 607 LEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGS 686 (932)
Q Consensus 607 l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~ 686 (932)
+-....++..+...+...+.++......+..-...+...-..+.........-+................-.........
T Consensus 2 li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 2 LIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 687 LLVDKDKTIGDLKAKIHKYEKYYAVMK 713 (932)
Q Consensus 687 ~l~~l~~~~~~l~~~l~~le~~~~~l~ 713 (932)
++..+..++..+...+..++..+..+.
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 402
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.55 E-value=1.6e+02 Score=26.63 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 599 RSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678 (932)
Q Consensus 599 ~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~ 678 (932)
++-.-..++...+..+......+......+..-...+......+......+..-+................-........
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~ 80 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE 80 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYE 706 (932)
Q Consensus 679 ~~i~~l~~~l~~l~~~~~~l~~~l~~le 706 (932)
.+|..+...+..+...+..+...+..+.
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 403
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=55.55 E-value=10 Score=41.32 Aligned_cols=42 Identities=19% Similarity=0.437 Sum_probs=0.0
Q ss_pred cc-eecCCCCChHHHHHHHHHHHHHHhc--CCCCceeeecccccCCCcE
Q psy16994 107 FS-NIYGPHTTQAELFQNIVHNMLERYL--NGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 107 fd-~v~~~~~~q~~v~~~~~~~~v~~~~--~g~~~~i~~~G~tgsGKt~ 152 (932)
|+ .||+ +.+..+..+.-+-.... ...+..++-.|++|||||+
T Consensus 49 F~~~~~G----~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 49 FDHDFFG----MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred cchhccC----cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHH
No 404
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=55.51 E-value=2.8e+02 Score=29.46 Aligned_cols=239 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhhcCCCChHHHH
Q psy16994 493 LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV-------------AQLSRRVEEMERGAQTENKPEEVK 559 (932)
Q Consensus 493 l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~-------------~~l~~~~~~l~~~~~~~~~~~~~~ 559 (932)
+..+...+..+..-.......+..+...+..-...-..+.... ..+...+..+. .-+.
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~---------~~L~ 94 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYR---------EYLE 94 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHH---------HHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHH---------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16994 560 YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLT-----------VRSAELEYELEQRDYLIAVKTDGAEELQEKL 628 (932)
Q Consensus 560 ~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~-----------~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l 628 (932)
....--..+...+......+.-+..-...+...+-... ..+..+-.++..+..+...+-..+.. ....
T Consensus 95 ~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~-~~~~ 173 (296)
T PF13949_consen 95 QASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE-KLQN 173 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q ss_pred HHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 629 DYMENKFQ--------EESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKA 700 (932)
Q Consensus 629 ~~l~~~l~--------~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~ 700 (932)
..+..-+. . ...-....-.....+...+......-..+-..+......+.......... ......-.
T Consensus 174 d~i~~~l~~~~~~~~~~----~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~-~~r~~~~~ 248 (296)
T PF13949_consen 174 DDISKLLSELNKNGSAD----FEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQ-KERESALQ 248 (296)
T ss_dssp -HHHHHHHHHHHSSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHH-HHHHHHHH
T ss_pred ccHHHHHHHhhccCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQS 746 (932)
Q Consensus 701 ~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~ 746 (932)
.+...-....++...+.+-..=...+...+..+...+...-.....
T Consensus 249 ~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f~~~R~~ 294 (296)
T PF13949_consen 249 RLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDFCNARRE 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 405
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.32 E-value=1.8e+02 Score=27.18 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q psy16994 643 ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD-------------------------------- 690 (932)
Q Consensus 643 ~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~-------------------------------- 690 (932)
...+.++..++..+..+++.+..++..+...+.++..-++.++.--..
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 -------KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742 (932)
Q Consensus 691 -------l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~ 742 (932)
....++.+..+++++.+.+..+...+.++...+..+......+.........
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 406
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.29 E-value=4e+02 Score=31.09 Aligned_cols=234 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Q psy16994 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLR---------SE 585 (932)
Q Consensus 515 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~---------~~ 585 (932)
..-..-++..-.........+...-..+..+. .++..++....+...+++-++-++++++ .+
T Consensus 139 ~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~---------~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~ 209 (557)
T COG0497 139 ELQRQLLDAFAGLEELAQEAYQEAYQAWKQAR---------RELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEE 209 (557)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16994 586 VEKLSEERRLLTVRSAELEYELEQRD------YLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD 659 (932)
Q Consensus 586 l~~l~~~~~~l~~~l~~l~~~l~~~~------~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~ 659 (932)
+..-...+...++-...+...+..+. .-+..+......+.. +......+.. +...+.....++.+...+
T Consensus 210 L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~-~~~~d~~l~~----~~~~l~ea~~~l~ea~~e 284 (557)
T COG0497 210 LEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALED-LSEYDGKLSE----LAELLEEALYELEEASEE 284 (557)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hhccChhHHH----HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTK 739 (932)
Q Consensus 660 l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~ 739 (932)
+...-..+.---..+...+..+..+..-.......+..+-.....+..++..+ ......+..
T Consensus 285 l~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L------------------~~~~~~~~~ 346 (557)
T COG0497 285 LRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL------------------DNSEESLEA 346 (557)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh------------------hhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 740 LEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783 (932)
Q Consensus 740 l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el 783 (932)
++.++..+..++...-..+...+.+... .+...+....+.+
T Consensus 347 Le~~~~~l~~~~~~~A~~Ls~~R~~~A~---~L~~~v~~eL~~L 387 (557)
T COG0497 347 LEKEVKKLKAELLEAAEALSAIRKKAAK---ELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=54.95 E-value=3.5 Score=44.42 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 121 FQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 121 ~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
|......++..++.+. ..|+-.|+||||||++|
T Consensus 129 ~~~~~~~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 129 MTEAQASVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred CCHHHHHHHHHHHHcC-CeEEEECCCCCCHHHHH
No 408
>KOG0743|consensus
Probab=54.80 E-value=17 Score=40.34 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHhcCCCCceeeecccccCCCc-----------EEEecceEEEecCHHHHHHHHHhhhhcccccccc
Q psy16994 118 AELFQNI-VHNMLERYLNGEDALLFSFGTTNSGKT-----------FTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTE 185 (932)
Q Consensus 118 ~~v~~~~-~~~~v~~~~~g~~~~i~~~G~tgsGKt-----------~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~ 185 (932)
.++...+ ..+.+..+=.-+-..-+.|||+|+||| |-|+-|.--.|.+-.|...+|
T Consensus 215 ~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL------------- 281 (457)
T KOG0743|consen 215 DDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLL------------- 281 (457)
T ss_pred HHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHH-------------
Q ss_pred CccCCCCCccEE
Q psy16994 186 LNHRSSRSHCVF 197 (932)
Q Consensus 186 ~n~~ssrsh~i~ 197 (932)
+..+++|-.|+
T Consensus 282 -~~t~~kSIivI 292 (457)
T KOG0743|consen 282 -LATPNKSILLI 292 (457)
T ss_pred -HhCCCCcEEEE
No 409
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=54.73 E-value=3.5 Score=41.76 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|+-||++|+|||++
T Consensus 153 nVLFyGppGTGKTm~ 167 (368)
T COG1223 153 NVLFYGPPGTGKTMM 167 (368)
T ss_pred eeEEECCCCccHHHH
No 410
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=54.25 E-value=1.4e+02 Score=28.41 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy16994 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKT---KCEELTQQVTKLEADCQ----SYLNTIKNM 754 (932)
Q Consensus 682 ~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~---~~~~l~~~l~~l~~~l~----~l~~~l~~l 754 (932)
+....-.......+......+..+..++..++.++.....+|..+.. ....++.++..++.... .++.++..+
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy16994 755 E 755 (932)
Q Consensus 755 ~ 755 (932)
.
T Consensus 82 ~ 82 (155)
T PF06810_consen 82 K 82 (155)
T ss_pred H
No 411
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.09 E-value=1.5e+02 Score=25.95 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy16994 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE---DRKTKEKDIAELKTK 729 (932)
Q Consensus 653 ~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~---~l~~l~~~l~~l~~~ 729 (932)
+..+....+.....+..-. .....-..+-.+..+...+..+++.++.+...+.+++..+.. ....+..+...+..+
T Consensus 4 ik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16994 730 CEELTQQVTKLEADCQSY 747 (932)
Q Consensus 730 ~~~l~~~l~~l~~~l~~l 747 (932)
+..++.++..++.++..+
T Consensus 83 i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 83 IKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 412
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=53.84 E-value=4.9 Score=43.64 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 122 ~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
...+..++..++.+. +.|+-.|+||||||++|
T Consensus 146 ~~~~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 146 EKKIKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred hHHHHHHHHHHHHcC-CcEEEECCCCCCHHHHH
No 413
>KOG0739|consensus
Probab=53.84 E-value=7.9 Score=40.10 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=0.0
Q ss_pred eeecccccCCCcE------EEecceEEEecCHHHHHHHH
Q psy16994 140 LFSFGTTNSGKTF------TIQDLTYVNVHSCEEAYRVL 172 (932)
Q Consensus 140 i~~~G~tgsGKt~------t~~Gl~~~~v~s~~~~~~~l 172 (932)
|+.||++|+||+| |=.+-+.+.|.|.+=+-.++
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
No 414
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=53.79 E-value=2.2e+02 Score=27.77 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 647 SEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAEL 726 (932)
Q Consensus 647 ~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l 726 (932)
+.+-.....-...+...+-....++.+...++..|...+.....+..++.-....-......-...+.+...|+.+...+
T Consensus 87 E~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 87 EAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16994 727 KTKCEELTQQVTKLEADCQ 745 (932)
Q Consensus 727 ~~~~~~l~~~l~~l~~~l~ 745 (932)
+.++..++..+..|+...+
T Consensus 167 qaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 167 QAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHhc
No 415
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=53.60 E-value=4e+02 Score=30.58 Aligned_cols=224 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Q psy16994 470 DETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV--TKNKELEGKVAQLSRRVEEMER 547 (932)
Q Consensus 470 ~~~l~~~~~~~~~k~~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~--~~~~~l~~~~~~l~~~~~~l~~ 547 (932)
...+-..+..+..............-+...+..+...+...+...........-.. ............+...+....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~- 252 (458)
T COG3206 174 ANALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSAR- 252 (458)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHH-
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16994 548 GAQTENKPEEVKYLKSLLDEAKEEFKEQT---TEIEQLRSE-VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623 (932)
Q Consensus 548 ~~~~~~~~~~~~~l~~~l~~~~~~l~~l~---~~i~~l~~~-l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~ 623 (932)
.........+..+........ ......... +..+..+...+...+.++...+......+..+...+..
T Consensus 253 --------~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~ 324 (458)
T COG3206 253 --------ARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAE 324 (458)
T ss_pred --------HHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 624 LQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKI 702 (932)
Q Consensus 624 l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l 702 (932)
++..+...-.++.................+......++...........++.+++.+.+..+.-++.+-....++....
T Consensus 325 ~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 325 LRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 416
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=53.58 E-value=4.2 Score=35.91 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-||++|.|||+
T Consensus 1 I~i~G~~G~GKS~ 13 (107)
T PF00910_consen 1 IWIYGPPGIGKST 13 (107)
T ss_pred CEEECCCCCCHHH
No 417
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=53.42 E-value=11 Score=35.92 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|+.+|.+|+|||..+.-+. .........+..-+.+........+ ..-++.|
T Consensus 3 v~v~G~~~~GKTtli~~l~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l 53 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFT-------------------------DGKFSEQYKSTIGVDFKTKTIEVDG----KRVKLQI 53 (164)
T ss_pred EEEECCCCCCHHHHHHHHh-------------------------cCCCCCCCCCceeeEEEEEEEEECC----EEEEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 54 ~D~~G~~~ 61 (164)
T smart00175 54 WDTAGQER 61 (164)
T ss_pred EECCChHH
No 418
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=52.77 E-value=10 Score=45.38 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-------ceEEEecCHHHHHHHHH
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------LTYVNVHSCEEAYRVLR 173 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------l~~~~v~s~~~~~~~l~ 173 (932)
|....-|.|...|..-+.. ++..+-.|....+ .+|.|||||||||.+ -.-|.+.+...|..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~ 72 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYN 72 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
No 419
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.60 E-value=1e+02 Score=23.45 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 706 EKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754 (932)
Q Consensus 706 e~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l 754 (932)
..++..+...+..|..++..+...+..+...+...+.+.......|+..
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 420
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=52.43 E-value=1.8e+02 Score=27.59 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 768 LLKIYEDRLKAVQDELAEMKCAQLK-------------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKL 834 (932)
Q Consensus 768 ~~~~~~~~~~~~~~el~~l~~~~~~-------------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l 834 (932)
+.+.|+..+....++-......... .........+..++..+..++..|+.+++.+......|...+
T Consensus 55 VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 55 VRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q psy16994 835 LQKGEMINNLKAQMEKSQQ 853 (932)
Q Consensus 835 ~~~~~~~~~L~~~l~~~~~ 853 (932)
...++.+..|-.-|++...
T Consensus 135 ~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 135 STIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 421
>PHA02244 ATPase-like protein
Probab=52.22 E-value=9.6 Score=41.57 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 106 RFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 106 ~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.++.+=.+.......+......+...+-.|.+.+| +|++|+|||+
T Consensus 90 ~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL--~GppGtGKTt 134 (383)
T PHA02244 90 DISGIDTTKIASNPTFHYETADIAKIVNANIPVFL--KGGAGSGKNH 134 (383)
T ss_pred chhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHH
No 422
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=52.16 E-value=3.2e+02 Score=29.10 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q psy16994 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVY 642 (932)
Q Consensus 563 ~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~ 642 (932)
+..++...+--++-..+..+..++..+. ...+...+..+...+......+.+++.++..++..+......+..-....
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms--~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMS--STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 643 ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKD 722 (932)
Q Consensus 643 ~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~ 722 (932)
...+...-..+.+....+..+..++.....++.............+..+......+-.....-....-..-........+
T Consensus 119 ~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~~g~~~e 198 (301)
T PF06120_consen 119 NGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLKGMNGAHAE 198 (301)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q ss_pred HHHH
Q psy16994 723 IAEL 726 (932)
Q Consensus 723 l~~l 726 (932)
+..+
T Consensus 199 f~~l 202 (301)
T PF06120_consen 199 FNRL 202 (301)
T ss_pred HHHH
No 423
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=51.77 E-value=4.3 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=0.0
Q ss_pred cCCCCceeeecccccCCCcEEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+......|+-.|++|+|||+|+
T Consensus 190 ~~~~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 190 ILEQGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred ccCCCeEEEEECCCCCCHHHHH
No 424
>KOG0972|consensus
Probab=51.49 E-value=3e+02 Score=28.56 Aligned_cols=150 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 510 MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589 (932)
Q Consensus 510 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l 589 (932)
++..-..-+--+.++..-...+...+......+..+. ..+...++.+...-..+..+++.+-.+...+
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh------------~eit~~LEkI~SREK~lNnqL~~l~q~fr~a 285 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLH------------KEITKALEKIASREKSLNNQLASLMQKFRRA 285 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 590 SEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ 669 (932)
Q Consensus 590 ~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~ 669 (932)
...+..++........-+......+.+.-.+++.++.++..--..... -.-+..+.+.+..++.+...+.-++.-
T Consensus 286 ~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msD-----GaplvkIkqavsKLk~et~~mnv~igv 360 (384)
T KOG0972|consen 286 TDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSD-----GAPLVKIKQAVSKLKEETQTMNVQIGV 360 (384)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----CchHHHHHHHHHHHHHHHHhhhhheeh
Q ss_pred HHHHHHH
Q psy16994 670 SAHDEQA 676 (932)
Q Consensus 670 ~~~~~~~ 676 (932)
+...+-.
T Consensus 361 ~ehs~lq 367 (384)
T KOG0972|consen 361 FEHSILQ 367 (384)
T ss_pred hhHHHHH
No 425
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=51.48 E-value=4e+02 Score=30.01 Aligned_cols=167 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16994 577 TEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE--ELQEKLDYMENKFQEESLVYERLMSEKENLIS 654 (932)
Q Consensus 577 ~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~--~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~ 654 (932)
.++..++.++..+..-.......+...-..+...-..+........ .-+..+..-+..+......+-..+.+++.-++
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE 230 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVE 230 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKY-EKYYAVMKEDRKTKEKDIAELKTKCEEL 733 (932)
Q Consensus 655 ~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l-e~~~~~l~~~l~~l~~~l~~l~~~~~~l 733 (932)
.++.++- .....-...+++.+..++..+...+..+..-+...+-..+.. +.++...-.+.+-+..+ ..-+..|
T Consensus 231 ~LRkDV~--~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q----edL~~DL 304 (424)
T PF03915_consen 231 DLRKDVV--QRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ----EDLLSDL 304 (424)
T ss_dssp HHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHH--HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16994 734 TQQVTKLEADCQSYLN 749 (932)
Q Consensus 734 ~~~l~~l~~~l~~l~~ 749 (932)
...+..+..-+..++.
T Consensus 305 ~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 305 KEDLKKASETFALVEQ 320 (424)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 426
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.44 E-value=1.9e+02 Score=26.20 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------
Q psy16994 737 VTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK------------------------ 792 (932)
Q Consensus 737 l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~------------------------ 792 (932)
+..+...+..+..++..+...+..+...+.+ +......+..+......
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e--------~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~ 72 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTE--------YEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVL 72 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEE
Q ss_pred ----------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 793 ----------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQK 837 (932)
Q Consensus 793 ----------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~ 837 (932)
..+.+-...+......+...+..+...+......+..+...+...
T Consensus 73 v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 73 VDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 427
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=51.43 E-value=1.6e+02 Score=25.49 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER 759 (932)
Q Consensus 691 l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~ 759 (932)
+-.+...++.+...+.+..-+-+..-..+...+......+..++.++..+.-....+...+..+..++.
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.18 E-value=4.3 Score=44.59 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCceeeecccccCCCcEEE
Q psy16994 135 GEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t~ 154 (932)
.....++-+|++|+|||+|+
T Consensus 135 ~~g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTT 154 (374)
T ss_pred cCCcEEEEECCCCCCHHHHH
No 429
>KOG2373|consensus
Probab=51.16 E-value=11 Score=39.73 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCceeeec--ccccCCCcEEE
Q psy16994 127 NMLERYLNGEDALLFSF--GTTNSGKTFTI 154 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~--G~tgsGKt~t~ 154 (932)
|.+..++.|.--.=++. |+||||||+.|
T Consensus 261 pvLNk~LkGhR~GElTvlTGpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEecCCCCCceeEe
No 430
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=51.04 E-value=22 Score=35.08 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccc
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPT 184 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t 184 (932)
+.+..+|...+....=.+.....+...+-.+ ..++-.|.+|+|||. +++.-.........
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~--~~~~~~G~~nvGKSt------------------liN~l~~~~~~~~~ 156 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAKKG--GDVYVVGATNVGKST------------------LINALLKKDNGKKK 156 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhhcC--CcEEEEcCCCCCHHH------------------HHHHHHHhcccccc
Q ss_pred cCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCC
Q psy16994 185 ELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAG 224 (932)
Q Consensus 185 ~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLag 224 (932)
..+..+.....-+|..+.....+. .+.|||++|
T Consensus 157 ~~~~~~~~~~~gtT~~~~~~~~~~-------~~~~~DtPG 189 (190)
T cd01855 157 LKDLLTTSPIPGTTLDLIKIPLGN-------GKKLYDTPG 189 (190)
T ss_pred cccccccCCCCCeeeeeEEEecCC-------CCEEEeCcC
No 431
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.00 E-value=2e+02 Score=27.38 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy16994 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK---DIAELKTKCEELTQQVT----KLEADCQSY 747 (932)
Q Consensus 675 ~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~---~l~~l~~~~~~l~~~l~----~l~~~l~~l 747 (932)
+.+..-+......+............++..++.++......|..+.. ...+++.++..++.... ..+.++...
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy16994 748 LNT 750 (932)
Q Consensus 748 ~~~ 750 (932)
...
T Consensus 82 ~~~ 84 (155)
T PF06810_consen 82 KKD 84 (155)
T ss_pred HHH
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=50.99 E-value=3.2 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
..+-+|++|||||..|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
No 433
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=50.41 E-value=3.2e+02 Score=28.63 Aligned_cols=132 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKC 788 (932)
Q Consensus 709 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~ 788 (932)
..+++.+-.+|..++.-.+.+..-|.+--.+.-.++..+...+.+|+.-+-.--.-... .+.|..+...+..+...|..
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNa-vrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANA-VRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcc--------------------------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy16994 789 AQLK--------------------------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMI 841 (932)
Q Consensus 789 ~~~~--------------------------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~ 841 (932)
.++. ..+-++..-++.+.+.|.+.+.-...-..........++.++..+++-+
T Consensus 81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGL 159 (351)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.35 E-value=5.8e+02 Score=31.57 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy16994 628 LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD-KDKTIGDLKAKIHKYE 706 (932)
Q Consensus 628 l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~-l~~~~~~l~~~l~~le 706 (932)
+...+.-+......+...+..++.+...++.....+......++.....++.+.+.++..... +.+...+....+.+.+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q psy16994 707 KYYAVMKEDRKT---------KEKDIAELKTKCEELTQQVTK 739 (932)
Q Consensus 707 ~~~~~l~~~l~~---------l~~~l~~l~~~~~~l~~~l~~ 739 (932)
.+...+-.++.+ ......+....+..+...+..
T Consensus 584 ~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 584 KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 435
>KOG0086|consensus
Probab=50.31 E-value=68 Score=29.67 Aligned_cols=125 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccE-EEEEEEEeCCCCCcceeEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCV-FSIKLVKVDPGSEELIMMSSFD 218 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i-~~i~v~~~~~~~~~~~~~s~l~ 218 (932)
++..|+.|+||+- +|..-..+ .+...||..-+| |--+|.. .....-+|.
T Consensus 12 fl~iG~aGtGKSC------------------LLh~Fie~------kfkDdssHTiGveFgSrIin------VGgK~vKLQ 61 (214)
T KOG0086|consen 12 FLVIGSAGTGKSC------------------LLHQFIEN------KFKDDSSHTIGVEFGSRIVN------VGGKTVKLQ 61 (214)
T ss_pred eEEeccCCCChhH------------------HHHHHHHh------hhcccccceeeeeecceeee------ecCcEEEEE
Q ss_pred EEeCCCCccccc------cccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCC
Q psy16994 219 ICDLAGAERQKR------AHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSS 292 (932)
Q Consensus 219 ~vDLagse~~~~------~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~ 292 (932)
+.|.||-||.+. .|+.|.-|--...---|+.+|.+-+...+.-. +.
T Consensus 62 IWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA----------------------------s~ 113 (214)
T KOG0086|consen 62 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA----------------------------SP 113 (214)
T ss_pred EeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC----------------------------CC
Q ss_pred eeEEEEecCCCcCcHHHHHHHHHHHHHhcc
Q psy16994 293 TVKMIVNVNASPAYAEETVQVLKISSVARD 322 (932)
Q Consensus 293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~~ 322 (932)
++++|.|-+-..-+-+--+.+|.-+.-|.+
T Consensus 114 nIvviL~GnKkDL~~~R~VtflEAs~FaqE 143 (214)
T KOG0086|consen 114 NIVVILCGNKKDLDPEREVTFLEASRFAQE 143 (214)
T ss_pred cEEEEEeCChhhcChhhhhhHHHHHhhhcc
No 436
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.24 E-value=69 Score=23.15 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16994 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQM 848 (932)
Q Consensus 807 ~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l 848 (932)
++++..++.|+..++.+......|......+...+..|...+
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 437
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.13 E-value=2.4e+02 Score=30.46 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q psy16994 676 ALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEEL--------TQQVTKLEADCQSY 747 (932)
Q Consensus 676 ~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l--------~~~l~~l~~~l~~l 747 (932)
+..++.++++++.+++++.......+++++.+-.......+..-...+.++...+..+ .+.+++++.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy16994 748 LNTIKNMENDE 758 (932)
Q Consensus 748 ~~~l~~l~~el 758 (932)
+..+.+.+..+
T Consensus 81 ~~~l~DmEa~L 91 (330)
T PF07851_consen 81 RCQLFDMEAFL 91 (330)
T ss_pred HhhHHHHHhhC
No 438
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=49.99 E-value=5 Score=42.80 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
...++-.++.+. +.|+-.|.||||||+++
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHH
No 439
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=49.76 E-value=18 Score=44.28 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH-----HHHHhcCCCCceeeeccccc
Q psy16994 73 TFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN-----MLERYLNGEDALLFSFGTTN 147 (932)
Q Consensus 73 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~-----~v~~~~~g~~~~i~~~G~tg 147 (932)
.+...+.+.+...+.+. ..............++|+.|.+....-..+...+..| ++..+--.....|+-||++|
T Consensus 144 ~p~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppG 222 (733)
T TIGR01243 144 QPAGFVYVTEATEVEIR-EKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPG 222 (733)
T ss_pred CCCCcEEECCCceEEec-CCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCC
Q ss_pred CCCcE
Q psy16994 148 SGKTF 152 (932)
Q Consensus 148 sGKt~ 152 (932)
+|||+
T Consensus 223 tGKT~ 227 (733)
T TIGR01243 223 TGKTL 227 (733)
T ss_pred CChHH
No 440
>KOG0972|consensus
Probab=49.76 E-value=3.2e+02 Score=28.37 Aligned_cols=144 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 596 LTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQ 675 (932)
Q Consensus 596 l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 675 (932)
+......++--+.....-..............+..+...+...-..+...-..+.+++..+-.+...+...+..++....
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 676 ALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY------YAVMKEDRKTKEKDIAELKTKCEELTQQVTK 739 (932)
Q Consensus 676 ~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~------~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~ 739 (932)
.....+......+.+.-.+++.++.++.+--.. +..++..+..++.+...+.-++.-+...+-.
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHHHH
No 441
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.55 E-value=77 Score=23.96 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL 740 (932)
Q Consensus 701 ~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l 740 (932)
++.+++.++..+...+..++.+..++...+..+++.+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.55 E-value=10 Score=40.57 Aligned_cols=93 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred cccccCCCccc-ccCCCCceEEEeCCCeEEEcCCC---CccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhc-
Q psy16994 59 KQILNSFDQSY-AGSTFENVLEVLDQKSIMFKPMK---DMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYL- 133 (932)
Q Consensus 59 ~~rvRp~~~~e-~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~- 133 (932)
++.+.++-... ..++..-++....-.-+.+-|+. .+..-.....-..+|+.|=+-+..-.+|.+.+-.|+.+.-+
T Consensus 98 vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF 177 (406)
T COG1222 98 VVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELF 177 (406)
T ss_pred EEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHH
Q ss_pred --CCCC--ceeeecccccCCCc
Q psy16994 134 --NGED--ALLFSFGTTNSGKT 151 (932)
Q Consensus 134 --~g~~--~~i~~~G~tgsGKt 151 (932)
=|.. -.|+.||++|+|||
T Consensus 178 ~~~GI~PPKGVLLYGPPGTGKT 199 (406)
T COG1222 178 EELGIDPPKGVLLYGPPGTGKT 199 (406)
T ss_pred HHcCCCCCCceEeeCCCCCcHH
No 443
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=49.42 E-value=2e+02 Score=25.93 Aligned_cols=121 Identities=7% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Q psy16994 628 LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD-------------KDKT 694 (932)
Q Consensus 628 l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~-------------l~~~ 694 (932)
...++..+.. ...++.....+|..+...+.....-+..-...+......+.+.+-...+ ...+
T Consensus 3 ve~a~rny~~----a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlk 78 (136)
T PF11570_consen 3 VEVAERNYEA----ARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLK 78 (136)
T ss_dssp HHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 695 IGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIK 752 (932)
Q Consensus 695 ~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~ 752 (932)
+..+...+..-+.++......+..+..+|...+.-+......+......+...+.++.
T Consensus 79 vr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 79 VRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 444
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=49.41 E-value=4.2 Score=44.30 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCceeeecccccCCCcEEE
Q psy16994 136 EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~ 154 (932)
..+.|+..|+||||||++|
T Consensus 161 ~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred cCCeEEEECCCCccHHHHH
No 445
>KOG1533|consensus
Probab=49.33 E-value=5.8 Score=39.64 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEEec-----------------------------ceEEEecCHHHHHHHHHhh
Q psy16994 139 LLFSFGTTNSGKTFTIQD-----------------------------LTYVNVHSCEEAYRVLRFG 175 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G-----------------------------l~~~~v~s~~~~~~~l~~g 175 (932)
+-+..||+|||||+...| +.-..+-+.++++.-+..|
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LG 69 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLG 69 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCC
No 446
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=49.11 E-value=12 Score=42.29 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred ccccCCCccc-ccCCCCceEEEeCCCeEEEcCCC---CccccCCCCCcceecceecCCCCChHHHHHHHHHHHH-----H
Q psy16994 60 QILNSFDQSY-AGSTFENVLEVLDQKSIMFKPMK---DMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML-----E 130 (932)
Q Consensus 60 ~rvRp~~~~e-~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v-----~ 130 (932)
+.+.++...+ ..++....+.......+.+.|+. ....-.....-..+|+.|.+-+.--.++...+..|+. .
T Consensus 131 ~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~ 210 (438)
T PTZ00361 131 VNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYD 210 (438)
T ss_pred EeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHH
Q ss_pred HhcCCCCceeeecccccCCCcE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.+--.....|+-||++|+|||+
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~ 232 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTL 232 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHH
No 447
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=49.11 E-value=2.6e+02 Score=30.13 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q psy16994 669 QSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAEL--------KTKCEELTQQVTKL 740 (932)
Q Consensus 669 ~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l--------~~~~~~l~~~l~~l 740 (932)
+..++..+++++..++++........++++.+-....-..+...+..+.++...++.+ ...+++++.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy16994 741 EADCQSYLNTI 751 (932)
Q Consensus 741 ~~~l~~l~~~l 751 (932)
+..+.+.+..+
T Consensus 81 ~~~l~DmEa~L 91 (330)
T PF07851_consen 81 RCQLFDMEAFL 91 (330)
T ss_pred HhhHHHHHhhC
No 448
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=48.96 E-value=26 Score=34.64 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccE
Q psy16994 117 QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCV 196 (932)
Q Consensus 117 q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i 196 (932)
..+.|... +.+.....+.-..|...|.+|+|||. ++..-...+-...+.......+.-.+
T Consensus 6 ~~~~~~~~--~~~~~~~~~~~~~v~ivG~~~~GKSs------------------li~~l~~~~~~~~~~~~~~~t~~~~~ 65 (196)
T PRK00454 6 NAEFVTSA--PKLEQLPPDDGPEIAFAGRSNVGKSS------------------LINALTNRKNLARTSKTPGRTQLINF 65 (196)
T ss_pred HHHHHHhh--ccHhhCCCCCCCEEEEEcCCCCCHHH------------------HHHHHhCCCCcccccCCCCceeEEEE
Q ss_pred EEEEEEEeCCCCCcceeEEEEEEEeCCC
Q psy16994 197 FSIKLVKVDPGSEELIMMSSFDICDLAG 224 (932)
Q Consensus 197 ~~i~v~~~~~~~~~~~~~s~l~~vDLag 224 (932)
+.+. ..+.|||++|
T Consensus 66 ~~~~--------------~~l~l~DtpG 79 (196)
T PRK00454 66 FEVN--------------DKLRLVDLPG 79 (196)
T ss_pred EecC--------------CeEEEeCCCC
No 449
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=48.90 E-value=4.9 Score=36.54 Aligned_cols=13 Identities=38% Similarity=0.304 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-.|.+|||||+
T Consensus 1 I~i~G~~GsGKtT 13 (129)
T PF13238_consen 1 IGISGIPGSGKTT 13 (129)
T ss_dssp EEEEESTTSSHHH
T ss_pred CEEECCCCCCHHH
No 450
>PRK12704 phosphodiesterase; Provisional
Probab=48.86 E-value=5e+02 Score=30.33 Aligned_cols=157 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 629 DYMENKFQEESLVYERLMSEKENLISQLKADL-ESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707 (932)
Q Consensus 629 ~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l-~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~ 707 (932)
..+.........-........+........+. ..+......+...+...+.++...+..+..-...+..-...+...+.
T Consensus 31 ~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~ 110 (520)
T PRK12704 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN---MENDERSTKHNQEKLLKIYEDRLKAVQDELA 784 (932)
Q Consensus 708 ~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~---l~~el~~l~~~l~~~~~~~~~~~~~~~~el~ 784 (932)
.+......+...+.++.....++..+..+....-.++..+..+-.. +..--..++.+....++.++...+.--....
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 190 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA 190 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy16994 785 E 785 (932)
Q Consensus 785 ~ 785 (932)
.
T Consensus 191 ~ 191 (520)
T PRK12704 191 K 191 (520)
T ss_pred H
No 451
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=48.76 E-value=2.8e+02 Score=27.37 Aligned_cols=153 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 702 IHKYEKYYAVMKEDRKTKEKDIAELKTKCE----ELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLK 777 (932)
Q Consensus 702 l~~le~~~~~l~~~l~~l~~~l~~l~~~~~----~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~ 777 (932)
...++......+...+++...+..+..-+. .++...+.+..+....+..-..+...+..++.--..++.+|+.++.
T Consensus 27 vdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~ 106 (201)
T PF11172_consen 27 VDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELD 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcchHHHHHhcCchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16994 778 AVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQR---------HNVVRDLQLKLLQKGEMINNLKAQM 848 (932)
Q Consensus 778 ~~~~el~~l~~~~~~~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~---------~~~~~~l~~~l~~~~~~~~~L~~~l 848 (932)
.....--.-.....-...+.+...+.......+..+.=+...+.+. ..-+..|+..+..++..+..|-.+|
T Consensus 107 ~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m 186 (201)
T PF11172_consen 107 QYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEM 186 (201)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy16994 849 EKSQQQ 854 (932)
Q Consensus 849 ~~~~~~ 854 (932)
+....+
T Consensus 187 ~~sI~e 192 (201)
T PF11172_consen 187 ERSIAE 192 (201)
T ss_pred HHHHHH
No 452
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=48.72 E-value=8.2 Score=45.95 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=0.0
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 106 RFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 106 ~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
+|+.+++... .+..++..+..++...++-||++|+|||+
T Consensus 152 ~~~~iiGqs~--------~~~~l~~~ia~~~~~~vlL~Gp~GtGKTT 190 (615)
T TIGR02903 152 AFSEIVGQER--------AIKALLAKVASPFPQHIILYGPPGVGKTT 190 (615)
T ss_pred cHHhceeCcH--------HHHHHHHHHhcCCCCeEEEECCCCCCHHH
No 453
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=48.69 E-value=3.8e+02 Score=28.96 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 611 DYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD 690 (932)
Q Consensus 611 ~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~ 690 (932)
...+...+..+......+..+...+.. ...........+..+..++..+...+...+..+...+..+...+.-...
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~ 129 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKK----GEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRD 129 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 ---KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQ-----QVTKLEADCQSYLNTIKNMENDER 759 (932)
Q Consensus 691 ---l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~-----~l~~l~~~l~~l~~~l~~l~~el~ 759 (932)
-..+++..+..+...+..+..+...+. ..+...+..+..+.. ++...+..+...+..+......+.
T Consensus 130 g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 130 GAVSASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 454
>PF15294 Leu_zip: Leucine zipper
Probab=48.51 E-value=3.4e+02 Score=28.40 Aligned_cols=241 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16994 586 VEKLSEERRLLTVRSAE-LEYELEQRDYLIAVKTDGAEELQEKLDY-----MENKFQEESLVYERLMSEKENLISQLKAD 659 (932)
Q Consensus 586 l~~l~~~~~~l~~~l~~-l~~~l~~~~~~l~~l~~~~~~l~~~l~~-----l~~~l~~~~~~~~~~~~~l~~~~~~l~~~ 659 (932)
.......+.....-..+ -...+.+..-...+...-+..+...+.. +.......-..+.+-....++..-.+...
T Consensus 3 r~kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~d 82 (278)
T PF15294_consen 3 RSKREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTD 82 (278)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 660 LESNRAE-SNQSAHDEQALQKEIKN----------------------LGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDR 716 (932)
Q Consensus 660 l~~~~~~-l~~~~~~~~~l~~~i~~----------------------l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l 716 (932)
+..++.. +-....+.+...-.... +..++..++.+...++..+..++......-.+-
T Consensus 83 iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek 162 (278)
T PF15294_consen 83 ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEK 162 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q psy16994 717 KTKEKDIAELKTKCEELTQQV--TKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK-- 792 (932)
Q Consensus 717 ~~l~~~l~~l~~~~~~l~~~l--~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~-- 792 (932)
..++..+.+++.........- ..-...+..++..+..+..++.............++..+.....++-..+..+..
T Consensus 163 ~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~ae 242 (278)
T PF15294_consen 163 SKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAE 242 (278)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcch
Q ss_pred hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVV 827 (932)
Q Consensus 793 ~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~ 827 (932)
.+|...... ...+..+..-+..-..++..+++.+
T Consensus 243 keLekKfqq-T~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 243 KELEKKFQQ-TAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred hhHHHHhCc-cHHHHHhHHHHHhccHHHHHHHHHh
No 455
>PTZ00464 SNF-7-like protein; Provisional
Probab=48.42 E-value=3e+02 Score=27.68 Aligned_cols=143 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL--------EADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRL 776 (932)
Q Consensus 705 le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l--------~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~ 776 (932)
+...+..++..+..+..++..+..++..+.+.+... ....-.+-.+...++.++..+...+.. +
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~n--------l 87 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFN--------M 87 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Q ss_pred HHHHHHHHHHHHhhcc-hHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHH
Q psy16994 777 KAVQDELAEMKCAQLK-PSLEASAATPSQYRKQL-EDQVNSLKAELEQRHNVVRDLQLKLLQ-----KGEMINNLKAQME 849 (932)
Q Consensus 777 ~~~~~el~~l~~~~~~-~~L~~~l~~~~~~~~~l-~~e~~~l~~el~~~~~~~~~l~~~l~~-----~~~~~~~L~~~l~ 849 (932)
..+...+........- ..++.--..+...+..+ .+.++.+..++........++...+.. ....-.+|+.+|+
T Consensus 88 eq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe 167 (211)
T PTZ00464 88 DQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELD 167 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Q ss_pred HHHHHH
Q psy16994 850 KSQQQQ 855 (932)
Q Consensus 850 ~~~~~~ 855 (932)
.+..+.
T Consensus 168 ~Le~e~ 173 (211)
T PTZ00464 168 ALDFDM 173 (211)
T ss_pred HHHHHH
No 456
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=48.31 E-value=8.4 Score=41.75 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=0.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCC--ceeeecccccCCCcE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED--ALLFSFGTTNSGKTF 152 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~--~~i~~~G~tgsGKt~ 152 (932)
.+-+...|-|..-.+-+.+..+...+..++.... ..++-||++|+|||+
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~ 58 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTT 58 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHH
No 457
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.24 E-value=1.2e+02 Score=23.06 Aligned_cols=55 Identities=13% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED 774 (932)
Q Consensus 720 ~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~ 774 (932)
..++.+|..++..|..++..+...+..+...+...+.+.......|......|..
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
No 458
>KOG2543|consensus
Probab=48.11 E-value=4.5 Score=43.49 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEE
Q psy16994 140 LFSFGTTNSGKTFTI 154 (932)
Q Consensus 140 i~~~G~tgsGKt~t~ 154 (932)
|+-||.+||||||++
T Consensus 33 ~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV 47 (438)
T ss_pred EEEeccCCCchhHHH
No 459
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=48.11 E-value=4.3e+02 Score=29.44 Aligned_cols=295 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccchhHhhhHHHHHH
Q psy16994 401 EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA 480 (932)
Q Consensus 401 e~~~ree~~~~~~E~~~~l~e~~~~~~~~l~~e~~~~ee~~~~~~e~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 480 (932)
.+..... ....+...-.....+...............+..++..+......+..
T Consensus 11 ~a~~~r~---~s~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~----------------------- 64 (384)
T PF03148_consen 11 NAEAQRN---DSERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKNELER----------------------- 64 (384)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Q psy16994 481 QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENR-----------------DLVTKNKELEGKVAQLSRRVE 543 (932)
Q Consensus 481 ~~k~~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~-----------------~l~~~~~~l~~~~~~l~~~~~ 543 (932)
.+..+..++..|......++..+..+..-+.-...-+. .+..++.-+..-...|...+.
T Consensus 65 ----~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~ 140 (384)
T PF03148_consen 65 ----ELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLE 140 (384)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q psy16994 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEV-----------------------------EKLSEERR 594 (932)
Q Consensus 544 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l-----------------------------~~l~~~~~ 594 (932)
+.. .++..+..-...+...+.+-...+.--..-+ .-...-+.
T Consensus 141 ~~~---------eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~ 211 (384)
T PF03148_consen 141 QAE---------EQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQ 211 (384)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 595 LLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674 (932)
Q Consensus 595 ~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~ 674 (932)
..+.++.....-...+..-+......+.......... +...+........+++.++.....++...+..+
T Consensus 212 ~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~a----------l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i 281 (384)
T PF03148_consen 212 RAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAA----------LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNI 281 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 675 QALQKEIKNLGSLLVDKDKTIGD-----------------LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737 (932)
Q Consensus 675 ~~l~~~i~~l~~~l~~l~~~~~~-----------------l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l 737 (932)
..++..+.....-+.-....+.. |..++..+...+..+...+...+..+..|......++..+
T Consensus 282 ~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di 361 (384)
T PF03148_consen 282 EDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDI 361 (384)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q psy16994 738 TKLEADC 744 (932)
Q Consensus 738 ~~l~~~l 744 (932)
......+
T Consensus 362 ~~K~~sL 368 (384)
T PF03148_consen 362 AVKNNSL 368 (384)
T ss_pred HHHHHHH
No 460
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=48.02 E-value=6.5 Score=43.16 Aligned_cols=24 Identities=42% Similarity=0.904 Sum_probs=0.0
Q ss_pred CCCCCCCCCcccchhHHHhhcCCC
Q psy16994 3 AEGTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 3 ~~Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
..|++.++||+||+++.||+.|+.
T Consensus 106 m~G~~~~~Gli~r~~~~lF~~~~~ 129 (345)
T cd01368 106 MQGSPGDGGILPRSLDVIFNSIGG 129 (345)
T ss_pred ecCCCCCCchHHHHHHHHHHHHHh
No 461
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=47.74 E-value=11 Score=35.97 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|...|.+|+|||..+..+.. ....-..+...+.-..+....... .+.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~-----------------------~~~~~~~~~~~~~t~~~~~~~~~~---------~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN-----------------------RKKLARTSKTPGKTQLINFFNVND---------KFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc-----------------------CCceeeecCCCCcceeEEEEEccC---------eEEE
Q ss_pred EeCCC
Q psy16994 220 CDLAG 224 (932)
Q Consensus 220 vDLag 224 (932)
||+.|
T Consensus 50 ~D~~g 54 (170)
T cd01876 50 VDLPG 54 (170)
T ss_pred ecCCC
No 462
>PHA01747 putative ATP-dependent protease
Probab=47.69 E-value=7.1 Score=42.01 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEE
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
|+|+....+.|.-++=.||.|+||||+
T Consensus 180 PlVE~~~~~~NyNliELgPRGTGKS~~ 206 (425)
T PHA01747 180 PLFTSPVSKRPVHIIELSNRGTGKTTT 206 (425)
T ss_pred hheeccCCCCCeeEEEecCCCCChhhH
No 463
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.65 E-value=2.2e+02 Score=25.82 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHH----------------------------
Q psy16994 507 HEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV---------------------------- 558 (932)
Q Consensus 507 l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~---------------------------- 558 (932)
+..+...+..+..++..+...+..+...+.++..-++.+...........-+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~v 80 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYV 80 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEE
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 559 -KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSA 601 (932)
Q Consensus 559 -~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~ 601 (932)
..+...++-+...+..+...+..+...+..+..++..+...+.
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 464
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=47.59 E-value=5.8 Score=38.49 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=0.0
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
+.++-+||||+|||+
T Consensus 4 ~~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEEESSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
No 465
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=47.56 E-value=17 Score=34.94 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEE
Q psy16994 139 LLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFD 218 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~ 218 (932)
+|+..|..|+|||. .-+|-......+..++-.....++.+.. .++.
T Consensus 1 ~i~~~G~~~~GKTs-----------------------l~~~l~~~~~~~~~~t~g~~~~~~~~~~-----------~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTT-----------------------LVSALQGEIPKKVAPTVGFTPTKLRLDK-----------YEVC 46 (167)
T ss_pred CEEEECCCCCCHHH-----------------------HHHHHhCCCCccccCcccceEEEEEECC-----------EEEE
Q ss_pred EEeCCCCcc
Q psy16994 219 ICDLAGAER 227 (932)
Q Consensus 219 ~vDLagse~ 227 (932)
|+|++|.++
T Consensus 47 i~D~~G~~~ 55 (167)
T cd04161 47 IFDLGGGAN 55 (167)
T ss_pred EEECCCcHH
No 466
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=47.39 E-value=7.8 Score=45.03 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred eecceecCCCCChHHHHHHHH----HHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIV----HNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~----~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
++|+.|.+......++...+. ...+...-......|+.||++|+|||+
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~ 103 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTL 103 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHH
No 467
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=47.14 E-value=19 Score=39.40 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHH-----HHHHHHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 78 LEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAEL-----FQNIVHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v-----~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
...+++..+.+..|. .+..+..+.+...-....+..++ |...+..++..++.+. +.|+-.|+||||||.
T Consensus 120 ~~l~~g~Rv~~~~~p-----vs~~g~~i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~-~~ili~G~tGsGKTT 193 (340)
T TIGR03819 120 GRLPDGTRLHAVLPP-----VATDGTCLSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAAR-LAFLISGGTGSGKTT 193 (340)
T ss_pred eECCCCEEEEEEecC-----ccCCCcEEEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCC-CeEEEECCCCCCHHH
Q ss_pred EE
Q psy16994 153 TI 154 (932)
Q Consensus 153 t~ 154 (932)
++
T Consensus 194 ll 195 (340)
T TIGR03819 194 LL 195 (340)
T ss_pred HH
No 468
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=47.11 E-value=4.7e+02 Score=29.54 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579 (932)
Q Consensus 500 l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~i 579 (932)
+..-+.-++.+...... ..+.-.+.++...+..+......+..++....+..-.......-.-+..++.++.+++.++
T Consensus 225 L~~sE~~VN~Ls~rar~--D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL 302 (434)
T PRK15178 225 LSFAEQHVNTVSARMQK--ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEY 302 (434)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16994 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT--DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLK 657 (932)
Q Consensus 580 ~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~ 657 (932)
..+...+..-.-++..++.++..++.++.....++..-. ..+...-.+...+.-+.+-.+..+...+..++.-..+..
T Consensus 303 ~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~ 382 (434)
T PRK15178 303 AQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQAL 382 (434)
T ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy16994 658 ADL 660 (932)
Q Consensus 658 ~~l 660 (932)
.+.
T Consensus 383 RQ~ 385 (434)
T PRK15178 383 RER 385 (434)
T ss_pred hhh
No 469
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.10 E-value=2.2e+02 Score=25.74 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HH------------
Q psy16994 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLL-----------------------VD------------ 690 (932)
Q Consensus 646 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l-----------------------~~------------ 690 (932)
+..+...+..+..++..+...+..+...+.++..-+..+..-- ..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 691 ----KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEEL 733 (932)
Q Consensus 691 ----l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l 733 (932)
.......+...+..++..+..+...+..+..++..+...+..+
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 470
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=46.91 E-value=5.5e+02 Score=30.26 Aligned_cols=291 Identities=8% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 613 LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692 (932)
Q Consensus 613 ~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~ 692 (932)
++..+...+..+...+..+-..+......+......+......+..........+......+.++...+...........
T Consensus 246 Eig~l~~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~ 325 (553)
T PRK15048 246 EMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQAS 325 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
Q psy16994 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME------------NDERS 760 (932)
Q Consensus 693 ~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~------------~el~~ 760 (932)
.......................+.++.....+...-+.-+.. =.-+..+=.+..-++..+ .++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~~--Ia~QTNLLALNAaIEAARAGE~GrGFAVVA~EVr~ 403 (553)
T PRK15048 326 QLAQSASDTAQHGGKVVDGVVKTMHEIADSSKKIADIISVIDG--IAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRN 403 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccCCCCChhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16994 761 TKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEM 840 (932)
Q Consensus 761 l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~ 840 (932)
|-.+-.........-++.....+......... ....+..+..........+..+..-.+........+...+......
T Consensus 404 LA~~t~~st~~I~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~ 481 (553)
T PRK15048 404 LASRSAQAAKEIKALIEDSVSRVDTGSVLVES--AGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRV 481 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhccCCCCCCCCCCCCCccccccchhhhhhccCCCc
Q psy16994 841 INNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPST 908 (932)
Q Consensus 841 ~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 908 (932)
..+.-...++....-..+......|...+.+......+.+...+.|.. +..++|.....-.....+|
T Consensus 482 ~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~fk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 548 (553)
T PRK15048 482 TQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAASPLTNKPQTPSR-PASEQPPAQPRLRIAEQDP 548 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccc-ccccCCccCccCCcCCCCC
No 471
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=46.85 E-value=9.6 Score=42.76 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 120 LFQNIVHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 120 v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
+....+..++..+..|.|..+ ||++|+||||
T Consensus 179 i~e~~le~l~~~L~~~~~iil--~GppGtGKT~ 209 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIIL--QGPPGVGKTF 209 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEE--ECCCCCCHHH
No 472
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=46.82 E-value=2e+02 Score=25.28 Aligned_cols=107 Identities=11% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 647 SEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLG-----SLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK 721 (932)
Q Consensus 647 ~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~-----~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~ 721 (932)
+.....+......+......+..+......+...+.... ..+.....-+..+...+......+..+...+.....
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 722 DIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753 (932)
Q Consensus 722 ~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~ 753 (932)
.+.........++.-...............+.
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq 112 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEERREQ 112 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG3850|consensus
Probab=46.68 E-value=4.2e+02 Score=28.82 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q psy16994 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK--PSLEASAATPSQYRKQLEDQVNSLKAELE 821 (932)
Q Consensus 744 l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~--~~L~~~l~~~~~~~~~l~~e~~~l~~el~ 821 (932)
++.+-.++.+++.-...+...+..+...+..++.-+..-+++-+-.... +.|..-.+-...++..|..++.....++.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16994 822 -QRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852 (932)
Q Consensus 822 -~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~ 852 (932)
+.....++++..+...+.+|..|+-+....+
T Consensus 342 YQsyERaRdIqEalEscqtrisKlEl~qq~qq 373 (455)
T KOG3850|consen 342 YQSYERARDIQEALESCQTRISKLELQQQQQQ 373 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>KOG1655|consensus
Probab=46.67 E-value=2.9e+02 Score=26.96 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 697 DLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQ--QVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED 774 (932)
Q Consensus 697 ~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~--~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~ 774 (932)
.+...+..+...-..+..+|..|..++..++.++...+. ....+..+.-+.-.+..-++.+...+..+--.
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfN------- 88 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFN------- 88 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Q ss_pred HHHHHHHHHHHHHHhhcc-hHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHH
Q psy16994 775 RLKAVQDELAEMKCAQLK-PSLEASAATPSQYRKQL-EDQVNSLKAELEQRHNVVRDLQLKLLQKGEMI----NNLKAQM 848 (932)
Q Consensus 775 ~~~~~~~el~~l~~~~~~-~~L~~~l~~~~~~~~~l-~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~----~~L~~~l 848 (932)
++...--...++..... ..++.-..++..+++.+ .++|++|+.++..+-....+++..+....... ..|..+|
T Consensus 89 -MeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aEL 167 (218)
T KOG1655|consen 89 -MEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAEL 167 (218)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH
Q ss_pred HHHHHHH
Q psy16994 849 EKSQQQQ 855 (932)
Q Consensus 849 ~~~~~~~ 855 (932)
..+.++.
T Consensus 168 daL~~E~ 174 (218)
T KOG1655|consen 168 DALGQEL 174 (218)
T ss_pred HHHHhHh
No 475
>KOG2685|consensus
Probab=46.65 E-value=4.4e+02 Score=29.11 Aligned_cols=275 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16994 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645 (932)
Q Consensus 566 ~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 645 (932)
..+...+.++..=...+..+++.+..++..+......++..+..+..-+.-..+-+.- +..-....--....+.++-.+
T Consensus 73 ~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~-RekR~~~dlv~D~Ve~EL~kE 151 (421)
T KOG2685|consen 73 EKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAH-REKRQGIDLVHDEVETELHKE 151 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HhhcccchhhccccHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHH
Q psy16994 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVD-----------------------------KDKTIG 696 (932)
Q Consensus 646 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~-----------------------------l~~~~~ 696 (932)
+.-+..-...++..+.+...++.........+...+......+.- .+.-..
T Consensus 152 ~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~ 231 (421)
T KOG2685|consen 152 VELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAK 231 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 697 DLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCE--------ELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768 (932)
Q Consensus 697 ~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~--------~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~ 768 (932)
.....+...+.+......-.+.+..-+.....++. .+...+.+.+.-..+++.++.....++......+..+
T Consensus 232 fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~l 311 (421)
T KOG2685|consen 232 FSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEAL 311 (421)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-----------hHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 769 LKIYEDRLKAVQDELAEMKCAQLK-----------PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQK 837 (932)
Q Consensus 769 ~~~~~~~~~~~~~el~~l~~~~~~-----------~~L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~ 837 (932)
-..+..+...+.-....+...-.. -.|-.++.++......|+.++.+.+..+..+......|+..+.-+
T Consensus 312 e~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k 391 (421)
T KOG2685|consen 312 ERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK 391 (421)
T ss_pred HHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHH
Q psy16994 838 GEMI 841 (932)
Q Consensus 838 ~~~~ 841 (932)
...+
T Consensus 392 ~nsL 395 (421)
T KOG2685|consen 392 ANSL 395 (421)
T ss_pred hcch
No 476
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=46.63 E-value=33 Score=32.78 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|...|.+|+|||. ++.-+..|.-.....+|. ...+...+ ......-.+.|
T Consensus 4 v~~vG~~~vGKTs---------------li~~~~~~~f~~~~~~t~--------~~~~~~~~-------~~~~~~~~l~i 53 (165)
T cd04140 4 VVVFGAGGVGKSS---------------LVLRFVKGTFRESYIPTI--------EDTYRQVI-------SCSKNICTLQI 53 (165)
T ss_pred EEEECCCCCCHHH---------------HHHHHHhCCCCCCcCCcc--------hheEEEEE-------EECCEEEEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 54 ~Dt~G~~~ 61 (165)
T cd04140 54 TDTTGSHQ 61 (165)
T ss_pred EECCCCCc
No 477
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.57 E-value=12 Score=40.92 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHh--cCCCCceeeecccccCCCcE
Q psy16994 111 YGPHTTQAELFQNIVHNMLERY--LNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 111 ~~~~~~q~~v~~~~~~~~v~~~--~~g~~~~i~~~G~tgsGKt~ 152 (932)
|.....+..+... +..++... -.+....++-||++|+|||+
T Consensus 24 ~~~~vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~ 66 (328)
T PRK00080 24 LDEFIGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTT 66 (328)
T ss_pred HHHhcCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHH
No 478
>PLN03025 replication factor C subunit; Provisional
Probab=46.45 E-value=11 Score=41.07 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCceeeecccccCCCcEE
Q psy16994 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 122 ~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.-+-..+-.|....++-||++|+|||++
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTS 50 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHH
No 479
>PF15456 Uds1: Up-regulated During Septation
Probab=46.33 E-value=2.3e+02 Score=25.75 Aligned_cols=79 Identities=28% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 672 HDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM-----------KEDRKTKEKDIAELKTKCEELTQQVTKL 740 (932)
Q Consensus 672 ~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l-----------~~~l~~l~~~l~~l~~~~~~l~~~l~~l 740 (932)
++++.++.++..+...+..+...+. ++..+.+.-..+..+ ...+...+.++......++++..++..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy16994 741 EADCQSYLNTI 751 (932)
Q Consensus 741 ~~~l~~l~~~l 751 (932)
+.....++..+
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 480
>PHA02624 large T antigen; Provisional
Probab=46.31 E-value=12 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCc--eeeecccccCCCcE
Q psy16994 121 FQNIVHNMLERYLNGEDA--LLFSFGTTNSGKTF 152 (932)
Q Consensus 121 ~~~~~~~~v~~~~~g~~~--~i~~~G~tgsGKt~ 152 (932)
|...+..++..++.|... ||+-||+.|||||+
T Consensus 413 ~~~~~~~~lk~~l~giPKk~~il~~GPpnTGKTt 446 (647)
T PHA02624 413 FDDVIYDILKLIVENVPKRRYWLFKGPVNSGKTT 446 (647)
T ss_pred hHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
No 481
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.28 E-value=2e+02 Score=24.95 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Q psy16994 661 ESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK----------------------AKIHKYEKYYAVMKEDRKT 718 (932)
Q Consensus 661 ~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~----------------------~~l~~le~~~~~l~~~l~~ 718 (932)
.....++..+..++..+...+..+...+..+...+..+. .-+..++.....+...+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16994 719 KEKDIAELKTKCEELTQQVT 738 (932)
Q Consensus 719 l~~~l~~l~~~~~~l~~~l~ 738 (932)
++..+..+...+..++..+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 482
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.26 E-value=1.4e+02 Score=29.35 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 645 LMSEKENLISQLKADLESNRAESNQ-SAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723 (932)
Q Consensus 645 ~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l 723 (932)
+...+++++..|...+..++..... -...-....--..+++.-+.-.+.++..+..........+..++..++.++.++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16994 724 AELKTKCEELTQQVTKLE 741 (932)
Q Consensus 724 ~~l~~~~~~l~~~l~~l~ 741 (932)
..|+.-+..-+.++..|+
T Consensus 177 ~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhc
No 483
>KOG0736|consensus
Probab=46.22 E-value=17 Score=43.03 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred ceeeecccccCCCc--------------EEEec---ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEE
Q psy16994 138 ALLFSFGTTNSGKT--------------FTIQD---LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIK 200 (932)
Q Consensus 138 ~~i~~~G~tgsGKt--------------~t~~G---l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~ 200 (932)
+.|+-||++|+||| ..+.| +-...-.|.+-+..+|.++ ++.+-+.||.=.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerA-------------R~A~PCVIFFDE 772 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERA-------------RSAAPCVIFFDE 772 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHh-------------hccCCeEEEecc
Q ss_pred EEEeCCCCCcceeEE
Q psy16994 201 LVKVDPGSEELIMMS 215 (932)
Q Consensus 201 v~~~~~~~~~~~~~s 215 (932)
+....+..+...-.|
T Consensus 773 LDSlAP~RG~sGDSG 787 (953)
T KOG0736|consen 773 LDSLAPNRGRSGDSG 787 (953)
T ss_pred ccccCccCCCCCCcc
No 484
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=46.22 E-value=5.1 Score=40.71 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEE
Q psy16994 140 LFSFGTTNSGKTFTI 154 (932)
Q Consensus 140 i~~~G~tgsGKt~t~ 154 (932)
+.-.|++|||||+||
T Consensus 30 ~vliGpSGsGKTTtL 44 (309)
T COG1125 30 LVLIGPSGSGKTTTL 44 (309)
T ss_pred EEEECCCCCcHHHHH
No 485
>KOG2010|consensus
Probab=46.16 E-value=2.2e+02 Score=29.94 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q psy16994 720 EKDIAELKT-KCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEAS 798 (932)
Q Consensus 720 ~~~l~~l~~-~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~~~L~~~ 798 (932)
+.-+.++.. .+..++..+...---..++..+..++.-+...++..+.+ +..+
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE---------------------------~eeq 162 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEE---------------------------QEEQ 162 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHH---------------------------HHHH
Q ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy16994 799 AATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINN 843 (932)
Q Consensus 799 l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~ 843 (932)
|.....++..+..+++.++.-+..++.....+...+.+..+.|..
T Consensus 163 LaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 163 LAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=45.88 E-value=7.2 Score=40.70 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=0.0
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.....||+||||||+
T Consensus 88 ~I~~VYGPTG~GKSq 102 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQ 102 (369)
T ss_pred eEEEEECCCCCCHHH
No 487
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=45.82 E-value=18 Score=46.60 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEE------Eec
Q psy16994 83 QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT------IQD 156 (932)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t------~~G 156 (932)
+++|++..|.. .++.+.-|.+-.+|-.||+.++.-+ ..|.-++..|+||+|||-+ |+|
T Consensus 1812 ~~sv~vr~~er----------r~~l~~~~~~l~sql~vlEsV~~cI------n~nwPlIlvG~t~~GKt~~lRflasI~G 1875 (4600)
T COG5271 1812 GHSVTVRMKER----------RPRLDDSFVLLHSQLQVLESVMRCI------NMNWPLILVGDTGVGKTSLLRFLASIFG 1875 (4600)
T ss_pred CceEEEecccc----------CCCcccchhhhhhhhHHHHHHHHHH------hcCCCEEEEcCCCCchHHHHHHHHHHhc
Q ss_pred --ceEEEecCHHHHHHHH
Q psy16994 157 --LTYVNVHSCEEAYRVL 172 (932)
Q Consensus 157 --l~~~~v~s~~~~~~~l 172 (932)
++...|.|--+.+.+|
T Consensus 1876 ~~~~~f~~nsDtD~mDll 1893 (4600)
T COG5271 1876 QEMTLFNCNSDTDVMDLL 1893 (4600)
T ss_pred ccceEEeccCCchHHHHh
No 488
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.80 E-value=59 Score=36.56 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16994 796 EASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQME 849 (932)
Q Consensus 796 ~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~ 849 (932)
+..+.+.+.....|+.+|+.++.+++.+.+...+++.++..++.++..|+.+++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
No 489
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=45.75 E-value=15 Score=40.77 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec----------------------------------
Q psy16994 111 YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------- 156 (932)
Q Consensus 111 ~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------- 156 (932)
|.|..=....--..+..++.-+-.++|.+++ |++|+||||+..+
T Consensus 185 ~~P~~~~~r~k~~~L~rl~~fve~~~Nli~l--Gp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~~~lg~v~~~D 262 (449)
T TIGR02688 185 YEPEGFEARQKLLLLARLLPLVEPNYNLIEL--GPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNISTRQIGLVGRWD 262 (449)
T ss_pred CCcccCChHHHHHHHHhhHHHHhcCCcEEEE--CCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHHHHHhhhccCC
Q ss_pred ------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEE
Q psy16994 157 ------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF 197 (932)
Q Consensus 157 ------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~ 197 (932)
+..++.....++..+|.....+-+..-....-.+.-|-.++
T Consensus 263 lLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfv 309 (449)
T TIGR02688 263 VVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFL 309 (449)
T ss_pred EEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEE
No 490
>KOG2228|consensus
Probab=45.69 E-value=17 Score=38.72 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=0.0
Q ss_pred ecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 110 IYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 110 v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.|+..+-|..++.- +=..++.|-.-.++-.||.|||||+.+
T Consensus 26 l~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 26 LFGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred eeehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
No 491
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=45.54 E-value=2.6e+02 Score=26.09 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHH
Q psy16994 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKS 563 (932)
Q Consensus 484 ~~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~ 563 (932)
..|+.....+...+.++..+...+......+.....+++.++..+..+...+..+...+.-+. .+..+...
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~---------s~~~qes~ 114 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFM---------SKTPQESR 114 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------hhhHHHHH
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 564 L-LDEAKEEFKEQTTEIEQLRSEVEKL 589 (932)
Q Consensus 564 ~-l~~~~~~l~~l~~~i~~l~~~l~~l 589 (932)
- ++++..++.++....+.....+..+
T Consensus 115 ~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 115 GIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhh
No 492
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.38 E-value=1e+02 Score=34.68 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 473 LNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538 (932)
Q Consensus 473 l~~~~~~~~~k~~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l 538 (932)
++..|...-.+..+.+.+....+++++++.++.+++.+......++..++.++.++..|+.++..+
T Consensus 58 V~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 58 VDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 493
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=45.31 E-value=23 Score=33.63 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=0.0
Q ss_pred CceeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEE
Q psy16994 137 DALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSS 216 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~ 216 (932)
+.-|+.+|++|+|||. ++..-...............+.....+.+.-.. -+
T Consensus 1 ~~ki~v~G~~~~GKSs------------------li~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~-----------~~ 51 (163)
T cd01860 1 QFKLVLLGDSSVGKSS------------------LVLRFVKNEFSENQESTIGAAFLTQTVNLDDTT-----------VK 51 (163)
T ss_pred CeEEEEECCCCCCHHH------------------HHHHHHcCCCCCCCCCccceeEEEEEEEECCEE-----------EE
Q ss_pred EEEEeCCCCcc
Q psy16994 217 FDICDLAGAER 227 (932)
Q Consensus 217 l~~vDLagse~ 227 (932)
+.++|.+|.++
T Consensus 52 ~~i~D~~G~~~ 62 (163)
T cd01860 52 FEIWDTAGQER 62 (163)
T ss_pred EEEEeCCchHH
No 494
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.24 E-value=4.6e+02 Score=28.90 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy16994 568 AKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647 (932)
Q Consensus 568 ~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~ 647 (932)
.+.-+...+.-+..+.... ......-++.++...+.++...+..+...+.+..-+ ........ ....+.
T Consensus 149 an~l~~~~~~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~-----d~~~~~~~----~~~~i~ 217 (362)
T TIGR01010 149 NQRLLKEGERLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF-----DPKAQSSA----QLSLIS 217 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ChHHHHHH----HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTI--------GDLKAKIHKYEKYYAVMKEDRKTK 719 (932)
Q Consensus 648 ~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~--------~~l~~~l~~le~~~~~l~~~l~~l 719 (932)
.++.++..++.++..+......-.-.+..++.++..++..+......+ .....++..++.+.+-.+.....+
T Consensus 218 ~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 218 TLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q psy16994 720 EKDIAELKTK 729 (932)
Q Consensus 720 ~~~l~~l~~~ 729 (932)
-..+++.+-+
T Consensus 298 l~r~~~a~~~ 307 (362)
T TIGR01010 298 LTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHH
No 495
>PRK13764 ATPase; Provisional
Probab=45.17 E-value=6.2 Score=46.23 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+.+...+......|+..|+||||||+++
T Consensus 247 ~~l~~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 247 EKLKERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHH
No 496
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=44.88 E-value=3.2e+02 Score=27.06 Aligned_cols=196 Identities=10% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16994 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKF 635 (932)
Q Consensus 556 ~~~~~l~~~l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l 635 (932)
..+..+..........+..+.... ..+..+-..+..+-.+..-+--...---...-+.-..+.-+-.++..|-.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~----~~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir~LA~~t 91 (213)
T PF00015_consen 16 EEMEEIQESIEEIAESIEELSESS----EDISEILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIRKLAEQT 91 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHHHhhhhh
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 636 QEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715 (932)
Q Consensus 636 ~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~~~~l~~~ 715 (932)
..........+..+...+......+......+......+......+..+...+..+...+..+.............+...
T Consensus 92 ~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~ 171 (213)
T PF00015_consen 92 SESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINES 171 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755 (932)
Q Consensus 716 l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~ 755 (932)
+..+..-..........+......+......+...+..++
T Consensus 172 i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 172 IEEISEISEQISASSEEIAEAAEELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 497
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.84 E-value=2.3e+02 Score=25.27 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc--hHHHHHhc
Q psy16994 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL-AEMKCAQLK--PSLEASAA 800 (932)
Q Consensus 724 ~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el-~~l~~~~~~--~~L~~~l~ 800 (932)
..+...+..+......+...+..+...+..+.......+..+...+..+...++..+..+ ..+...... ..+..++.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q psy16994 801 TPSQYRKQLEDQVNSLKAELE 821 (932)
Q Consensus 801 ~~~~~~~~l~~e~~~l~~el~ 821 (932)
.+......+..-+.....-+.
T Consensus 83 ~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 83 SLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 498
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=44.82 E-value=14 Score=36.76 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|+.+|.+|+|||..+.-+. ...........-.-.+.+.++.+.. ..-.+.|
T Consensus 9 ivvvG~~~vGKTsli~~l~--------------------~~~~~~~~~~t~~~~~~~~~~~~~~---------~~~~l~l 59 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFA--------------------DNTFSGSYITTIGVDFKIRTVEING---------ERVKLQI 59 (199)
T ss_pred EEEECCCCCCHHHHHHHHh--------------------cCCCCCCcCccccceeEEEEEEECC---------EEEEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 60 ~D~~G~~~ 67 (199)
T cd04110 60 WDTAGQER 67 (199)
T ss_pred EeCCCchh
No 499
>PF15456 Uds1: Up-regulated During Septation
Probab=44.72 E-value=2.4e+02 Score=25.58 Aligned_cols=79 Identities=9% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 686 SLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAEL-----------KTKCEELTQQVTKLEADCQSYLNTIKNM 754 (932)
Q Consensus 686 ~~l~~l~~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l-----------~~~~~~l~~~l~~l~~~l~~l~~~l~~l 754 (932)
++++.+++++..+...+..+...+. ++..+.+.-..+..+ .......+..+......+.++..++..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy16994 755 ENDERSTKHNQ 765 (932)
Q Consensus 755 ~~el~~l~~~l 765 (932)
+.....++..+
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 500
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=44.72 E-value=27 Score=34.92 Aligned_cols=59 Identities=27% Similarity=0.408 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEE
Q psy16994 139 LLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFD 218 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~ 218 (932)
.|+..|++|+|||. ++..|..+.......++..|. .++.+...... ..+.
T Consensus 2 ~vll~G~~~sGKTs---------------L~~~l~~~~~~~t~~s~~~~~--------~~~~~~~~~~~-------~~~~ 51 (203)
T cd04105 2 TVLLLGPSDSGKTA---------------LFTKLTTGKYRSTVTSIEPNV--------ATFILNSEGKG-------KKFR 51 (203)
T ss_pred eEEEEcCCCCCHHH---------------HHHHHhcCCCCCccCcEeecc--------eEEEeecCCCC-------ceEE
Q ss_pred EEeCCCCcc
Q psy16994 219 ICDLAGAER 227 (932)
Q Consensus 219 ~vDLagse~ 227 (932)
|||++|.++
T Consensus 52 l~D~pG~~~ 60 (203)
T cd04105 52 LVDVPGHPK 60 (203)
T ss_pred EEECCCCHH
Done!