Query psy16994
Match_columns 932
No_of_seqs 1058 out of 5028
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 19:02:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 6.3E-65 2.1E-69 542.3 19.3 271 51-333 5-345 (350)
2 3bfn_A Kinesin-like protein KI 100.0 4E-65 1.4E-69 547.4 15.2 271 47-334 18-358 (388)
3 1goj_A Kinesin, kinesin heavy 100.0 2.1E-64 7.2E-69 540.4 18.7 265 49-333 5-340 (355)
4 3b6u_A Kinesin-like protein KI 100.0 1.7E-64 5.9E-69 541.5 16.4 273 47-333 18-363 (372)
5 2owm_A Nckin3-434, related to 100.0 7.4E-64 2.5E-68 550.3 19.1 312 13-331 1-421 (443)
6 3lre_A Kinesin-like protein KI 100.0 8.4E-64 2.9E-68 536.7 17.8 259 60-323 16-355 (355)
7 2y65_A Kinesin, kinesin heavy 100.0 5.9E-64 2E-68 538.0 16.7 259 49-331 10-341 (365)
8 3cob_A Kinesin heavy chain-lik 100.0 2.7E-63 9.3E-68 532.7 19.3 262 51-333 6-337 (369)
9 2wbe_C Bipolar kinesin KRP-130 100.0 1.4E-63 4.6E-68 537.8 17.0 264 50-330 23-368 (373)
10 2zfi_A Kinesin-like protein KI 100.0 2.8E-63 9.7E-68 534.8 18.9 264 61-330 11-361 (366)
11 1t5c_A CENP-E protein, centrom 100.0 2.4E-63 8.1E-68 531.0 16.8 265 49-335 3-340 (349)
12 1bg2_A Kinesin; motor protein, 100.0 1.2E-63 4E-68 528.8 13.8 249 50-323 7-325 (325)
13 1x88_A Kinesin-like protein KI 100.0 1.4E-63 4.7E-68 535.8 13.5 266 50-330 8-357 (359)
14 1ry6_A Internal kinesin; kines 100.0 1E-62 3.4E-67 527.5 17.5 259 60-330 6-338 (360)
15 2h58_A Kinesin-like protein KI 100.0 9.9E-62 3.4E-66 515.3 20.7 252 51-324 5-329 (330)
16 1v8k_A Kinesin-like protein KI 100.0 2.1E-62 7E-67 529.2 15.5 262 49-328 70-407 (410)
17 3t0q_A AGR253WP; kinesin, alph 100.0 1E-61 3.4E-66 520.2 20.5 261 51-327 6-348 (349)
18 3gbj_A KIF13B protein; kinesin 100.0 9.9E-62 3.4E-66 520.4 20.3 260 60-322 7-349 (354)
19 4a14_A Kinesin, kinesin-like p 100.0 3.1E-62 1.1E-66 524.0 16.0 253 49-321 10-344 (344)
20 2heh_A KIF2C protein; kinesin, 100.0 2.8E-62 9.6E-67 525.2 15.6 260 49-326 50-385 (387)
21 3nwn_A Kinesin-like protein KI 100.0 1.9E-62 6.4E-67 525.2 12.9 257 50-323 24-359 (359)
22 1f9v_A Kinesin-like protein KA 100.0 2E-61 7E-66 516.5 19.6 260 51-328 4-346 (347)
23 2rep_A Kinesin-like protein KI 100.0 3.8E-61 1.3E-65 517.4 18.7 259 50-323 22-376 (376)
24 4etp_A Kinesin-like protein KA 100.0 8.1E-61 2.8E-65 522.5 19.7 261 51-328 60-402 (403)
25 3dc4_A Kinesin-like protein NO 100.0 4.2E-61 1.4E-65 511.6 15.6 246 50-327 22-339 (344)
26 3u06_A Protein claret segregat 100.0 3E-60 1E-64 516.8 17.7 260 50-329 59-388 (412)
27 2nr8_A Kinesin-like protein KI 100.0 1.5E-60 5E-65 510.3 12.9 256 51-323 24-358 (358)
28 4h1g_A Maltose binding protein 100.0 3E-55 1E-59 524.0 17.4 215 101-324 428-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 3.7E-26 1.3E-30 192.7 3.7 82 242-330 2-83 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 1.7E-23 5.9E-28 183.9 6.8 79 245-330 1-79 (117)
31 1c1g_A Tropomyosin; contractIl 99.4 8E-09 2.7E-13 109.3 46.7 58 485-542 7-64 (284)
32 1i84_S Smooth muscle myosin he 99.3 5.9E-12 2E-16 158.2 10.9 20 134-153 166-185 (1184)
33 1i84_S Smooth muscle myosin he 99.3 1.1E-11 3.7E-16 155.8 12.0 12 293-304 677-688 (1184)
34 2o0a_A S.cerevisiae chromosome 99.1 1.5E-11 5.3E-16 122.0 3.9 48 103-151 57-107 (298)
35 3na7_A HP0958; flagellar bioge 97.8 0.0047 1.6E-07 63.1 24.8 50 488-537 29-78 (256)
36 3o0z_A RHO-associated protein 97.5 0.037 1.3E-06 50.5 22.0 33 485-517 7-39 (168)
37 3vkg_A Dynein heavy chain, cyt 97.4 0.053 1.8E-06 73.1 31.1 17 138-154 1305-1321(3245)
38 3vkg_A Dynein heavy chain, cyt 97.4 0.069 2.4E-06 72.1 31.6 31 314-344 1632-1662(3245)
39 2fxo_A Myosin heavy chain, car 96.7 0.26 8.9E-06 43.9 19.6 8 569-576 82-89 (129)
40 2dfs_A Myosin-5A; myosin-V, in 96.3 0.14 4.9E-06 63.0 20.4 20 134-153 153-172 (1080)
41 3oja_B Anopheles plasmodium-re 95.1 0.28 9.7E-06 57.1 16.1 9 217-225 234-242 (597)
42 3ol1_A Vimentin; structural ge 94.7 1.2 4.1E-05 38.9 14.9 15 745-759 86-100 (119)
43 2dfs_A Myosin-5A; myosin-V, in 94.2 15 0.0005 45.3 38.0 16 214-229 430-445 (1080)
44 3q8t_A Beclin-1; autophagy, AT 93.4 2.9 9.9E-05 34.7 15.2 32 728-759 60-91 (96)
45 4gkw_A Spindle assembly abnorm 93.0 3.8 0.00013 34.9 22.2 23 485-507 12-34 (167)
46 3ec2_A DNA replication protein 92.4 0.031 1.1E-06 53.7 0.8 51 104-155 6-56 (180)
47 3ol1_A Vimentin; structural ge 91.9 5.9 0.0002 34.4 16.6 13 754-766 88-100 (119)
48 2w58_A DNAI, primosome compone 90.0 0.1 3.4E-06 51.1 1.7 50 104-154 21-71 (202)
49 2qgz_A Helicase loader, putati 89.4 0.11 3.9E-06 54.6 1.7 51 105-156 121-171 (308)
50 3oja_A Leucine-rich immune mol 87.3 13 0.00044 41.6 17.2 10 216-225 145-154 (487)
51 2w83_C C-JUN-amino-terminal ki 86.5 5 0.00017 30.9 8.5 69 803-871 8-76 (77)
52 3oja_A Leucine-rich immune mol 85.3 19 0.00064 40.2 17.1 12 215-226 191-202 (487)
53 3t15_A Ribulose bisphosphate c 84.1 0.39 1.3E-05 50.0 2.2 37 118-154 13-53 (293)
54 3s4r_A Vimentin; alpha-helix, 84.0 16 0.00056 30.0 11.5 10 744-753 72-81 (93)
55 3cvf_A Homer-3, homer protein 82.7 6.6 0.00023 30.9 8.0 64 811-874 13-76 (79)
56 2r62_A Cell division protease 82.1 0.83 2.8E-05 46.7 3.8 50 104-154 7-61 (268)
57 2i1j_A Moesin; FERM, coiled-co 81.8 6.8 0.00023 44.6 11.4 36 104-139 77-117 (575)
58 3i00_A HIP-I, huntingtin-inter 81.4 20 0.0007 30.9 11.5 14 807-820 102-115 (120)
59 3te6_A Regulatory protein SIR3 80.1 0.36 1.2E-05 50.6 0.1 21 133-153 41-61 (318)
60 2i1j_A Moesin; FERM, coiled-co 79.2 2.2 7.5E-05 48.7 6.2 18 111-128 20-37 (575)
61 3cf0_A Transitional endoplasmi 78.2 0.66 2.3E-05 48.5 1.4 50 105-154 12-66 (301)
62 2bjv_A PSP operon transcriptio 77.8 0.64 2.2E-05 47.5 1.2 44 105-154 3-46 (265)
63 1wt6_A Myotonin-protein kinase 77.6 16 0.00054 28.6 8.5 46 805-850 25-70 (81)
64 2kjq_A DNAA-related protein; s 77.5 0.5 1.7E-05 43.5 0.2 18 137-154 36-53 (149)
65 3a7p_A Autophagy protein 16; c 77.2 40 0.0014 30.1 12.8 28 730-757 98-125 (152)
66 1jbk_A CLPB protein; beta barr 75.9 1 3.6E-05 42.8 2.1 30 125-154 31-60 (195)
67 3h4m_A Proteasome-activating n 75.6 0.74 2.5E-05 47.6 0.9 51 104-154 13-68 (285)
68 4b4t_M 26S protease regulatory 75.1 0.76 2.6E-05 50.3 0.9 50 104-153 177-231 (434)
69 2p65_A Hypothetical protein PF 74.6 1.1 3.8E-05 42.5 1.8 29 125-153 31-59 (187)
70 2v1u_A Cell division control p 74.5 0.77 2.6E-05 49.8 0.7 39 115-154 22-61 (387)
71 3mq9_A Bone marrow stromal ant 74.2 59 0.002 35.8 16.3 15 161-175 139-153 (471)
72 1l8q_A Chromosomal replication 74.1 1.4 4.9E-05 46.4 2.7 49 104-155 7-55 (324)
73 1g8p_A Magnesium-chelatase 38 73.6 1 3.5E-05 48.1 1.4 42 104-153 20-61 (350)
74 3iv1_A Tumor susceptibility ge 73.4 17 0.0006 28.4 7.8 59 808-866 15-73 (78)
75 1xwi_A SKD1 protein; VPS4B, AA 73.4 0.99 3.4E-05 47.6 1.2 49 105-153 9-61 (322)
76 3nmd_A CGMP dependent protein 72.3 19 0.00065 27.7 7.6 43 807-849 22-64 (72)
77 3cf2_A TER ATPase, transitiona 72.2 3.8 0.00013 48.6 5.9 50 104-153 200-254 (806)
78 3b9p_A CG5977-PA, isoform A; A 72.0 0.94 3.2E-05 47.1 0.6 50 104-153 17-70 (297)
79 1ixz_A ATP-dependent metallopr 71.7 1.3 4.3E-05 44.9 1.5 51 104-155 12-67 (254)
80 3mq9_A Bone marrow stromal ant 71.2 75 0.0026 35.0 16.2 16 281-299 226-241 (471)
81 1d2n_A N-ethylmaleimide-sensit 70.2 1.4 4.7E-05 45.2 1.4 20 134-153 61-80 (272)
82 3bos_A Putative DNA replicatio 69.5 1.2 4.2E-05 44.3 0.8 46 105-155 25-70 (242)
83 3d8b_A Fidgetin-like protein 1 69.5 1 3.5E-05 48.4 0.2 50 105-154 81-134 (357)
84 2z4s_A Chromosomal replication 69.1 1.4 4.8E-05 48.8 1.2 48 104-155 101-148 (440)
85 1sxj_C Activator 1 40 kDa subu 67.3 1.4 4.9E-05 46.8 0.8 41 107-155 24-64 (340)
86 2qz4_A Paraplegin; AAA+, SPG7, 67.0 1 3.6E-05 45.7 -0.4 19 136-154 38-56 (262)
87 2qp9_X Vacuolar protein sortin 66.8 1.6 5.5E-05 46.7 1.1 50 105-154 48-101 (355)
88 4b4t_L 26S protease subunit RP 66.6 1.5 5E-05 48.1 0.7 50 104-153 177-231 (437)
89 3uk6_A RUVB-like 2; hexameric 66.5 2.2 7.4E-05 45.9 2.1 46 104-154 40-87 (368)
90 4b4t_K 26S protease regulatory 66.3 1.8 6.3E-05 47.2 1.4 50 104-153 168-222 (428)
91 3trt_A Vimentin; cytoskeleton, 65.3 48 0.0016 26.0 10.3 32 419-450 11-42 (77)
92 1fnn_A CDC6P, cell division co 65.1 2.7 9.1E-05 45.5 2.5 37 117-154 22-61 (389)
93 1u0j_A DNA replication protein 64.9 2.2 7.6E-05 43.1 1.6 28 125-152 89-119 (267)
94 4b4t_J 26S protease regulatory 64.8 1.7 5.9E-05 46.8 0.8 50 104-153 144-198 (405)
95 3eie_A Vacuolar protein sortin 64.6 1.6 5.5E-05 46.0 0.6 50 105-154 15-68 (322)
96 1p9r_A General secretion pathw 64.4 1.3 4.5E-05 48.3 -0.2 27 128-154 158-184 (418)
97 1lkx_A Myosin IE heavy chain; 63.8 2.3 7.9E-05 49.4 1.7 68 134-201 91-168 (697)
98 1lv7_A FTSH; alpha/beta domain 63.6 1.3 4.4E-05 44.9 -0.4 49 104-153 8-61 (257)
99 2c9o_A RUVB-like 1; hexameric 63.0 2.9 9.8E-05 46.5 2.3 46 104-154 33-80 (456)
100 1iy2_A ATP-dependent metallopr 62.7 2.4 8.1E-05 43.5 1.4 17 139-155 75-91 (278)
101 2zan_A Vacuolar protein sortin 62.6 1.6 5.6E-05 48.3 0.2 50 104-153 130-183 (444)
102 3vfd_A Spastin; ATPase, microt 62.6 1.7 5.9E-05 47.2 0.3 51 104-154 111-165 (389)
103 4b4t_I 26S protease regulatory 61.8 2.4 8.3E-05 45.9 1.3 49 105-153 179-232 (437)
104 3jvv_A Twitching mobility prot 61.8 1.4 4.6E-05 47.2 -0.7 25 130-154 116-140 (356)
105 1tue_A Replication protein E1; 61.2 3 0.0001 40.2 1.7 20 137-156 58-77 (212)
106 3t34_A Dynamin-related protein 61.2 2.5 8.7E-05 45.3 1.3 14 216-229 137-150 (360)
107 2qby_A CDC6 homolog 1, cell di 60.9 2 7E-05 46.3 0.6 20 135-154 43-62 (386)
108 2chg_A Replication factor C sm 60.7 3.1 0.00011 40.5 1.8 21 134-154 35-55 (226)
109 1gvn_B Zeta; postsegregational 60.1 4.3 0.00015 41.8 2.8 33 120-152 15-48 (287)
110 1w9i_A Myosin II heavy chain; 59.7 7 0.00024 45.9 4.7 68 134-201 169-247 (770)
111 2eyu_A Twitching motility prot 59.4 1.7 5.9E-05 44.1 -0.4 19 136-154 24-42 (261)
112 1sxj_D Activator 1 41 kDa subu 59.0 3 0.0001 44.3 1.5 41 106-154 35-75 (353)
113 1w7j_A Myosin VA; motor protei 58.4 7.7 0.00026 45.8 4.9 68 134-201 153-228 (795)
114 3iox_A AGI/II, PA; alpha helix 58.0 2.1E+02 0.0072 31.0 16.3 18 738-755 83-100 (497)
115 1g8x_A Myosin II heavy chain f 57.5 7.5 0.00026 47.4 4.7 68 134-201 169-247 (1010)
116 2x8a_A Nuclear valosin-contain 57.5 1.9 6.4E-05 44.2 -0.5 49 105-153 7-60 (274)
117 4b4t_H 26S protease regulatory 57.4 2.7 9.1E-05 46.1 0.7 50 104-153 205-259 (467)
118 2ycu_A Non muscle myosin 2C, a 56.9 8.1 0.00028 47.1 4.8 20 134-153 143-162 (995)
119 3syl_A Protein CBBX; photosynt 56.9 2.5 8.7E-05 44.0 0.4 19 135-153 65-83 (309)
120 2p5t_B PEZT; postsegregational 56.3 5.1 0.00017 40.4 2.5 35 118-152 12-47 (253)
121 3hu3_A Transitional endoplasmi 56.3 3.1 0.00011 46.6 1.0 50 105-154 201-255 (489)
122 4anj_A Unconventional myosin-V 56.2 8.2 0.00028 47.0 4.7 57 134-201 141-214 (1052)
123 1kk8_A Myosin heavy chain, str 55.3 4.7 0.00016 48.0 2.3 68 134-201 166-251 (837)
124 3efg_A Protein SLYX homolog; x 55.3 38 0.0013 26.7 6.8 44 809-852 12-55 (78)
125 3n70_A Transport activator; si 54.1 2.9 9.9E-05 37.9 0.2 18 135-152 22-39 (145)
126 1vec_A ATP-dependent RNA helic 53.8 5.5 0.00019 38.3 2.3 20 131-152 36-55 (206)
127 3co5_A Putative two-component 53.4 2.7 9.4E-05 38.0 -0.1 21 136-156 26-46 (143)
128 2v26_A Myosin VI; calmodulin-b 53.3 9.8 0.00034 44.9 4.6 64 134-201 137-210 (784)
129 1ypw_A Transitional endoplasmi 53.0 8.7 0.0003 46.0 4.2 51 104-154 200-255 (806)
130 1qde_A EIF4A, translation init 52.4 4.7 0.00016 39.5 1.5 21 131-153 47-67 (224)
131 1sjj_A Actinin; 3-helix bundle 52.3 3.7E+02 0.012 32.1 30.2 14 774-787 613-626 (863)
132 2qby_B CDC6 homolog 3, cell di 52.0 5.2 0.00018 43.0 1.9 44 105-153 17-61 (384)
133 3pfi_A Holliday junction ATP-d 51.5 6 0.00021 41.7 2.3 44 106-154 27-72 (338)
134 3hhm_B NISH2 P85alpha; PI3KCA, 51.1 2.4E+02 0.0083 29.7 19.0 8 165-172 19-26 (373)
135 4db1_A Myosin-7; S1DC, cardiac 50.8 7.2 0.00025 45.9 2.9 68 134-201 168-252 (783)
136 2y65_A Kinesin, kinesin heavy 50.5 3.5 0.00012 43.9 0.1 25 2-26 104-128 (365)
137 2gxq_A Heat resistant RNA depe 50.4 5.4 0.00019 38.4 1.6 21 131-153 34-54 (207)
138 3lxx_A GTPase IMAP family memb 49.6 10 0.00035 37.5 3.6 18 136-153 28-45 (239)
139 1hqc_A RUVB; extended AAA-ATPa 49.6 9.5 0.00033 39.8 3.5 44 106-154 10-55 (324)
140 3t5d_A Septin-7; GTP-binding p 49.4 6.6 0.00023 40.0 2.1 21 134-154 5-25 (274)
141 2qag_A Septin-2, protein NEDD5 49.2 12 0.00042 39.8 4.2 23 132-154 32-54 (361)
142 3ly5_A ATP-dependent RNA helic 49.0 4.9 0.00017 40.7 1.0 21 131-153 87-107 (262)
143 3dkp_A Probable ATP-dependent 48.6 5.9 0.0002 39.5 1.6 22 130-153 61-82 (245)
144 2ewv_A Twitching motility prot 48.5 2.8 9.6E-05 45.1 -1.0 26 129-154 128-153 (372)
145 3b6u_A Kinesin-like protein KI 48.5 2.9 0.0001 44.5 -0.8 25 2-26 121-145 (372)
146 2l5g_B Putative uncharacterize 48.4 60 0.002 21.9 5.9 33 808-840 6-38 (42)
147 3fmo_B ATP-dependent RNA helic 48.3 6.1 0.00021 40.9 1.7 25 129-153 123-147 (300)
148 2owm_A Nckin3-434, related to 48.2 4.1 0.00014 44.6 0.3 25 4-28 155-179 (443)
149 3bor_A Human initiation factor 48.2 4.2 0.00014 40.5 0.3 22 130-153 62-83 (237)
150 3t1o_A Gliding protein MGLA; G 47.8 16 0.00054 34.4 4.5 15 138-152 15-29 (198)
151 3pxg_A Negative regulator of g 47.6 5 0.00017 44.7 0.9 29 128-156 192-220 (468)
152 2lw1_A ABC transporter ATP-bin 47.2 1.1E+02 0.0038 24.6 9.5 25 485-509 23-47 (89)
153 3cob_A Kinesin heavy chain-lik 47.2 3.7 0.00013 43.8 -0.3 24 4-27 98-121 (369)
154 2h58_A Kinesin-like protein KI 46.3 3.9 0.00013 42.9 -0.3 24 4-27 99-122 (330)
155 2pl3_A Probable ATP-dependent 45.8 7 0.00024 38.7 1.6 22 130-153 57-78 (236)
156 1goj_A Kinesin, kinesin heavy 45.0 4.8 0.00017 42.6 0.2 20 7-26 106-125 (355)
157 2oap_1 GSPE-2, type II secreti 44.5 5 0.00017 45.1 0.3 20 133-154 258-277 (511)
158 3pvs_A Replication-associated 44.5 5.2 0.00018 44.1 0.4 27 127-153 40-66 (447)
159 1qvr_A CLPB protein; coiled co 44.4 4 0.00014 49.4 -0.6 31 126-156 180-210 (854)
160 1hci_A Alpha-actinin 2; triple 44.3 3.4E+02 0.012 29.4 35.5 15 772-786 372-386 (476)
161 3lxw_A GTPase IMAP family memb 44.2 13 0.00045 37.0 3.4 17 137-153 21-37 (247)
162 2bov_A RAla, RAS-related prote 43.8 9.9 0.00034 36.3 2.3 15 138-152 15-29 (206)
163 3iuy_A Probable ATP-dependent 43.8 7.5 0.00026 38.2 1.4 22 130-153 52-73 (228)
164 1u8z_A RAS-related protein RAL 43.6 9.6 0.00033 34.8 2.1 14 139-152 6-19 (168)
165 2chq_A Replication factor C sm 43.5 7.7 0.00026 40.3 1.5 22 133-154 34-55 (319)
166 1c4o_A DNA nucleotide excision 43.5 14 0.00046 43.2 3.7 64 105-174 2-72 (664)
167 1f9v_A Kinesin-like protein KA 43.4 5.8 0.0002 41.9 0.5 25 2-26 92-123 (347)
168 2ce7_A Cell division protein F 43.3 7.2 0.00025 43.3 1.3 50 104-154 12-66 (476)
169 1w5s_A Origin recognition comp 43.1 8.9 0.0003 41.6 2.0 25 130-154 40-69 (412)
170 1z2a_A RAS-related protein RAB 43.1 7.6 0.00026 35.6 1.3 16 138-153 6-21 (168)
171 1ksh_A ARF-like protein 2; sma 43.0 16 0.00056 34.1 3.7 18 135-152 16-33 (186)
172 1t5c_A CENP-E protein, centrom 43.0 5.2 0.00018 42.3 0.1 24 4-27 96-119 (349)
173 4a14_A Kinesin, kinesin-like p 42.8 5.7 0.0002 41.9 0.4 21 7-27 111-131 (344)
174 2dhr_A FTSH; AAA+ protein, hex 42.6 5.7 0.00019 44.4 0.3 50 104-154 27-81 (499)
175 2zfi_A Kinesin-like protein KI 42.5 4.7 0.00016 43.0 -0.4 21 7-27 113-133 (366)
176 4emc_A Monopolin complex subun 42.5 1.1E+02 0.0038 28.4 8.7 54 795-848 11-64 (190)
177 3bfn_A Kinesin-like protein KI 42.4 4.8 0.00017 43.1 -0.3 23 4-26 117-139 (388)
178 1wrb_A DJVLGB; RNA helicase, D 42.1 8.4 0.00029 38.6 1.5 20 131-152 56-75 (253)
179 1iqp_A RFCS; clamp loader, ext 42.0 8.3 0.00028 40.2 1.5 21 134-154 43-63 (327)
180 2xtp_A GTPase IMAP family memb 41.8 19 0.00066 36.0 4.2 18 136-153 21-38 (260)
181 4gp7_A Metallophosphoesterase; 41.5 3.5 0.00012 38.6 -1.4 18 138-155 10-27 (171)
182 3b85_A Phosphate starvation-in 41.5 5.3 0.00018 38.8 -0.2 24 128-153 15-38 (208)
183 1t6n_A Probable ATP-dependent 41.4 9 0.00031 37.3 1.6 22 130-153 46-67 (220)
184 1bg2_A Kinesin; motor protein, 41.3 5.9 0.0002 41.5 0.1 22 5-26 100-121 (325)
185 1ofh_A ATP-dependent HSL prote 41.0 8.6 0.00029 39.8 1.4 18 137-154 50-67 (310)
186 3def_A T7I23.11 protein; chlor 40.8 33 0.0011 34.4 5.8 18 136-153 35-52 (262)
187 1c1y_A RAS-related protein RAP 40.8 24 0.00081 32.0 4.4 14 139-152 5-18 (167)
188 3ber_A Probable ATP-dependent 40.7 9.3 0.00032 38.2 1.6 21 131-153 76-96 (249)
189 3b6e_A Interferon-induced heli 40.4 4.9 0.00017 39.0 -0.6 19 133-153 46-64 (216)
190 2vvg_A Kinesin-2; motor protei 40.4 5.4 0.00019 42.2 -0.3 23 4-26 108-130 (350)
191 1njg_A DNA polymerase III subu 40.2 9.5 0.00032 37.4 1.5 18 137-154 45-62 (250)
192 3llm_A ATP-dependent RNA helic 40.1 8.2 0.00028 38.2 1.0 21 131-153 72-92 (235)
193 1ojl_A Transcriptional regulat 40.1 8 0.00027 40.1 1.0 19 135-153 23-41 (304)
194 2r44_A Uncharacterized protein 40.0 6.8 0.00023 41.2 0.4 18 138-155 47-64 (331)
195 4dsu_A GTPase KRAS, isoform 2B 39.8 26 0.00088 32.6 4.6 14 139-152 6-19 (189)
196 3gbj_A KIF13B protein; kinesin 39.7 5.6 0.00019 42.1 -0.3 23 4-26 111-133 (354)
197 3tau_A Guanylate kinase, GMP k 39.7 4.8 0.00016 39.1 -0.8 17 137-153 8-24 (208)
198 3fmp_B ATP-dependent RNA helic 39.6 9.5 0.00033 42.5 1.6 25 129-153 123-147 (479)
199 1kao_A RAP2A; GTP-binding prot 39.5 18 0.00061 32.8 3.3 15 138-152 4-18 (167)
200 2g6b_A RAS-related protein RAB 39.1 24 0.0008 32.6 4.1 15 138-152 11-25 (180)
201 2oxc_A Probable ATP-dependent 39.1 10 0.00035 37.3 1.5 21 131-153 57-77 (230)
202 2dyk_A GTP-binding protein; GT 39.0 13 0.00045 33.6 2.2 14 140-153 4-17 (161)
203 3m91_A Proteasome-associated A 38.8 1E+02 0.0036 21.9 7.1 31 819-849 17-47 (51)
204 1ek0_A Protein (GTP-binding pr 38.8 16 0.00055 33.3 2.9 14 139-152 5-18 (170)
205 1sxj_E Activator 1 40 kDa subu 38.7 6.9 0.00024 41.6 0.2 15 140-154 39-53 (354)
206 3u61_B DNA polymerase accessor 38.6 15 0.00053 38.2 3.0 19 137-155 48-66 (324)
207 1z0f_A RAB14, member RAS oncog 38.4 20 0.00067 33.1 3.4 15 138-152 16-30 (179)
208 3eiq_A Eukaryotic initiation f 38.3 13 0.00043 40.4 2.3 23 129-153 71-93 (414)
209 4b3f_X DNA-binding protein smu 38.3 5.6 0.00019 46.4 -0.7 18 139-156 207-224 (646)
210 1n0w_A DNA repair protein RAD5 38.2 6.5 0.00022 39.0 -0.1 28 127-154 11-41 (243)
211 3lw7_A Adenylate kinase relate 38.1 6.5 0.00022 36.5 -0.1 14 139-152 3-16 (179)
212 2ce2_X GTPase HRAS; signaling 38.1 18 0.00063 32.6 3.1 15 139-153 5-19 (166)
213 4djt_A GTP-binding nuclear pro 38.0 29 0.001 33.4 4.7 18 137-154 11-28 (218)
214 2efe_B Small GTP-binding prote 37.9 24 0.00082 32.6 3.9 17 137-153 12-28 (181)
215 3dc4_A Kinesin-like protein NO 37.5 6 0.00021 41.7 -0.5 22 7-28 122-143 (344)
216 3fe2_A Probable ATP-dependent 37.4 9.3 0.00032 38.0 0.9 20 132-153 63-82 (242)
217 3tw8_B RAS-related protein RAB 37.4 23 0.00078 32.6 3.7 16 138-153 10-25 (181)
218 3a00_A Guanylate kinase, GMP k 37.2 4.6 0.00016 38.3 -1.3 15 139-153 3-17 (186)
219 1r2q_A RAS-related protein RAB 36.9 36 0.0012 30.7 5.0 16 138-153 7-22 (170)
220 2lkc_A Translation initiation 36.7 32 0.0011 31.6 4.6 17 137-153 8-24 (178)
221 2erx_A GTP-binding protein DI- 36.7 23 0.00078 32.3 3.6 15 138-152 4-18 (172)
222 2bme_A RAB4A, RAS-related prot 36.7 16 0.00054 34.1 2.4 15 138-152 11-25 (186)
223 3c8u_A Fructokinase; YP_612366 36.6 14 0.00047 35.7 2.0 27 126-152 9-37 (208)
224 1z0j_A RAB-22, RAS-related pro 36.5 26 0.00088 31.9 3.9 15 139-153 8-22 (170)
225 3cl3_D NF-kappa-B essential mo 36.3 1.7E+02 0.006 25.0 8.2 18 758-775 85-102 (130)
226 3bc1_A RAS-related protein RAB 36.1 21 0.00073 33.3 3.3 15 138-152 12-26 (195)
227 1mh1_A RAC1; GTP-binding, GTPa 36.1 20 0.00068 33.3 3.1 15 139-153 7-21 (186)
228 3fht_A ATP-dependent RNA helic 35.9 12 0.00041 40.5 1.6 24 130-153 57-80 (412)
229 1upt_A ARL1, ADP-ribosylation 35.9 17 0.00057 33.3 2.4 16 138-153 8-23 (171)
230 2fz4_A DNA repair protein RAD2 35.8 9.4 0.00032 37.9 0.7 21 132-154 105-125 (237)
231 2bcg_Y Protein YP2, GTP-bindin 35.6 30 0.001 32.8 4.4 15 138-152 9-23 (206)
232 2w0m_A SSO2452; RECA, SSPF, un 35.4 7.9 0.00027 38.0 -0.0 27 128-154 11-40 (235)
233 4fcw_A Chaperone protein CLPB; 35.2 8 0.00027 40.1 0.0 17 138-154 48-64 (311)
234 1wms_A RAB-9, RAB9, RAS-relate 35.1 39 0.0013 30.9 4.9 15 138-152 8-22 (177)
235 1qhx_A CPT, protein (chloramph 35.1 8.1 0.00028 36.1 0.0 16 138-153 4-19 (178)
236 1kgd_A CASK, peripheral plasma 35.1 5.4 0.00018 37.7 -1.3 14 139-152 7-20 (180)
237 3e70_C DPA, signal recognition 34.8 12 0.00039 39.4 1.2 18 137-154 129-146 (328)
238 3b9q_A Chloroplast SRP recepto 34.7 11 0.00036 39.1 0.9 17 138-154 101-117 (302)
239 3lre_A Kinesin-like protein KI 34.7 7.6 0.00026 41.2 -0.3 24 4-27 124-147 (355)
240 2yhs_A FTSY, cell division pro 34.6 12 0.00041 41.4 1.3 16 139-154 295-310 (503)
241 1h65_A Chloroplast outer envel 34.6 31 0.0011 34.8 4.4 17 137-153 39-55 (270)
242 2pt7_A CAG-ALFA; ATPase, prote 34.6 8.3 0.00028 40.5 0.0 19 133-153 169-187 (330)
243 1q0u_A Bstdead; DEAD protein, 34.6 7.8 0.00027 37.8 -0.2 20 132-153 38-57 (219)
244 1sxj_B Activator 1 37 kDa subu 34.6 12 0.00042 38.8 1.4 21 134-154 39-59 (323)
245 3tkl_A RAS-related protein RAB 34.2 43 0.0015 31.2 5.2 15 138-152 17-31 (196)
246 3h1t_A Type I site-specific re 34.1 11 0.00038 43.3 1.0 29 125-154 187-215 (590)
247 3iev_A GTP-binding protein ERA 34.0 30 0.001 35.7 4.3 19 135-153 8-26 (308)
248 1ly1_A Polynucleotide kinase; 34.0 8.2 0.00028 36.1 -0.2 15 139-153 4-18 (181)
249 3upu_A ATP-dependent DNA helic 33.9 8.8 0.0003 42.5 0.1 37 114-155 27-63 (459)
250 3tr0_A Guanylate kinase, GMP k 33.7 5.6 0.00019 38.2 -1.4 15 139-153 9-23 (205)
251 1in4_A RUVB, holliday junction 33.7 16 0.00054 38.4 2.0 16 138-153 52-67 (334)
252 3reg_A RHO-like small GTPase; 33.7 35 0.0012 32.0 4.4 16 137-152 23-38 (194)
253 2zdi_C Prefoldin subunit alpha 33.6 1.9E+02 0.0065 25.9 9.1 94 670-763 7-140 (151)
254 3t5g_A GTP-binding protein RHE 33.6 17 0.0006 33.7 2.1 15 138-152 7-21 (181)
255 1zbd_A Rabphilin-3A; G protein 33.5 42 0.0014 31.7 5.0 15 138-152 9-23 (203)
256 3nwn_A Kinesin-like protein KI 33.5 7 0.00024 41.5 -0.8 21 7-27 129-149 (359)
257 3oes_A GTPase rhebl1; small GT 33.4 35 0.0012 32.3 4.4 16 137-152 24-39 (201)
258 3oiy_A Reverse gyrase helicase 33.4 14 0.00048 40.1 1.6 21 130-152 31-51 (414)
259 3pey_A ATP-dependent RNA helic 33.3 14 0.00048 39.6 1.6 24 130-153 37-60 (395)
260 1lvg_A Guanylate kinase, GMP k 33.1 5.5 0.00019 38.3 -1.5 15 139-153 6-20 (198)
261 2oil_A CATX-8, RAS-related pro 33.0 43 0.0015 31.2 5.0 15 138-152 26-40 (193)
262 3trf_A Shikimate kinase, SK; a 33.0 8.7 0.0003 36.2 -0.2 15 138-152 6-20 (185)
263 3t0q_A AGR253WP; kinesin, alph 33.0 10 0.00036 40.0 0.5 26 2-27 93-125 (349)
264 3vp9_A General transcriptional 32.9 64 0.0022 26.2 4.9 15 769-783 70-84 (92)
265 2qag_C Septin-7; cell cycle, c 32.9 6.6 0.00023 42.7 -1.1 22 132-153 26-47 (418)
266 1jr3_A DNA polymerase III subu 32.6 22 0.00074 37.8 3.0 18 137-154 38-55 (373)
267 4dhe_A Probable GTP-binding pr 32.5 18 0.00062 35.0 2.1 17 136-152 28-44 (223)
268 3cph_A RAS-related protein SEC 32.5 37 0.0013 32.3 4.5 16 138-153 21-36 (213)
269 1rj9_A FTSY, signal recognitio 32.5 7.2 0.00025 40.4 -0.9 18 137-154 102-119 (304)
270 1z08_A RAS-related protein RAB 32.3 34 0.0012 31.0 4.0 15 138-152 7-21 (170)
271 2atv_A RERG, RAS-like estrogen 32.1 47 0.0016 31.2 5.0 17 136-152 27-43 (196)
272 2a9k_A RAS-related protein RAL 32.1 42 0.0014 31.0 4.7 15 138-152 19-33 (187)
273 1m7b_A RND3/RHOE small GTP-bin 31.9 40 0.0014 31.3 4.5 16 137-152 7-22 (184)
274 2gf0_A GTP-binding protein DI- 31.8 35 0.0012 32.1 4.0 16 137-152 8-23 (199)
275 1rz3_A Hypothetical protein rb 31.8 16 0.00056 34.9 1.6 17 136-152 21-37 (201)
276 3fho_A ATP-dependent RNA helic 31.6 14 0.0005 41.4 1.4 24 130-153 151-174 (508)
277 2ga8_A Hypothetical 39.9 kDa p 31.6 23 0.00079 37.3 2.8 35 120-154 7-41 (359)
278 2fg5_A RAB-22B, RAS-related pr 31.5 34 0.0012 32.1 3.9 15 138-152 24-38 (192)
279 3iij_A Coilin-interacting nucl 31.5 9.2 0.00032 35.8 -0.3 17 138-154 12-28 (180)
280 4a74_A DNA repair and recombin 31.4 8.9 0.0003 37.6 -0.4 28 127-154 12-42 (231)
281 1x3s_A RAS-related protein RAB 31.3 50 0.0017 30.7 5.1 15 138-152 16-30 (195)
282 2x77_A ADP-ribosylation factor 31.2 30 0.001 32.3 3.4 19 136-154 21-39 (189)
283 3c5c_A RAS-like protein 12; GD 31.2 42 0.0014 31.3 4.5 16 137-152 21-36 (187)
284 3hws_A ATP-dependent CLP prote 31.1 10 0.00034 40.5 -0.1 18 137-154 51-68 (363)
285 1ye8_A Protein THEP1, hypothet 31.0 6.4 0.00022 37.1 -1.4 14 140-153 3-16 (178)
286 2px0_A Flagellar biosynthesis 31.0 12 0.00042 38.5 0.6 19 137-155 105-123 (296)
287 3nbx_X ATPase RAVA; AAA+ ATPas 31.0 15 0.0005 41.1 1.2 25 129-155 35-59 (500)
288 2gf9_A RAS-related protein RAB 30.8 55 0.0019 30.4 5.3 15 139-153 24-38 (189)
289 1z06_A RAS-related protein RAB 30.7 28 0.00096 32.5 3.1 16 137-152 20-35 (189)
290 2j0s_A ATP-dependent RNA helic 30.5 16 0.00056 39.4 1.5 22 130-153 69-90 (410)
291 1r6b_X CLPA protein; AAA+, N-t 30.5 11 0.00039 44.8 0.3 30 127-156 197-226 (758)
292 2v1x_A ATP-dependent DNA helic 30.4 22 0.00074 40.8 2.6 21 131-153 55-75 (591)
293 1um8_A ATP-dependent CLP prote 30.3 12 0.00041 40.1 0.4 18 137-154 72-89 (376)
294 1kag_A SKI, shikimate kinase I 30.2 10 0.00035 35.2 -0.2 14 139-152 6-19 (173)
295 2ew1_A RAS-related protein RAB 30.1 50 0.0017 31.3 4.9 15 138-152 27-41 (201)
296 3lnc_A Guanylate kinase, GMP k 29.7 9.5 0.00033 37.6 -0.5 16 139-154 29-44 (231)
297 2nzj_A GTP-binding protein REM 29.6 24 0.00083 32.3 2.4 16 138-153 5-20 (175)
298 3vaa_A Shikimate kinase, SK; s 29.6 11 0.00037 36.1 -0.1 15 138-152 26-40 (199)
299 3kb2_A SPBC2 prophage-derived 29.2 11 0.00038 34.8 -0.1 15 139-153 3-17 (173)
300 2og2_A Putative signal recogni 29.2 16 0.00053 38.8 1.0 17 138-154 158-174 (359)
301 3uie_A Adenylyl-sulfate kinase 29.2 13 0.00045 35.6 0.4 18 135-152 23-40 (200)
302 3pxi_A Negative regulator of g 29.1 26 0.00089 41.6 3.1 29 128-156 192-220 (758)
303 1zp6_A Hypothetical protein AT 28.9 11 0.00037 35.7 -0.3 16 138-153 10-25 (191)
304 3kl4_A SRP54, signal recogniti 28.8 22 0.00074 38.8 2.1 20 137-156 97-116 (433)
305 2b8t_A Thymidine kinase; deoxy 28.8 7.1 0.00024 38.3 -1.6 20 137-156 12-31 (223)
306 2cvh_A DNA repair and recombin 28.8 19 0.00066 34.7 1.6 28 127-154 7-37 (220)
307 2ze6_A Isopentenyl transferase 28.8 11 0.00039 37.7 -0.2 14 139-152 3-16 (253)
308 2fh5_B SR-beta, signal recogni 28.8 20 0.00067 34.5 1.6 16 137-152 7-22 (214)
309 2p5s_A RAS and EF-hand domain 28.7 29 0.00098 32.9 2.8 16 137-152 28-43 (199)
310 3zvr_A Dynamin-1; hydrolase, D 28.6 16 0.00055 42.9 1.1 16 139-154 53-68 (772)
311 1gd2_E Transcription factor PA 28.6 1.2E+02 0.0041 23.3 5.6 18 485-502 30-47 (70)
312 1ci6_A Transcription factor AT 28.6 1.7E+02 0.0059 21.8 6.4 16 488-503 27-42 (63)
313 1s2m_A Putative ATP-dependent 28.6 16 0.00056 39.2 1.1 20 132-153 55-74 (400)
314 4ag6_A VIRB4 ATPase, type IV s 28.6 8.2 0.00028 41.8 -1.4 18 137-154 35-52 (392)
315 2z0m_A 337AA long hypothetical 28.5 19 0.00064 37.5 1.5 21 131-153 27-47 (337)
316 1kht_A Adenylate kinase; phosp 28.5 12 0.00042 35.2 0.1 16 138-153 4-19 (192)
317 2nr8_A Kinesin-like protein KI 28.3 9.6 0.00033 40.4 -0.8 19 9-27 130-148 (358)
318 2qmh_A HPR kinase/phosphorylas 28.2 15 0.00051 35.2 0.6 18 135-152 32-49 (205)
319 2bdt_A BH3686; alpha-beta prot 28.2 7.8 0.00027 36.7 -1.4 15 139-153 4-18 (189)
320 4gzl_A RAS-related C3 botulinu 28.2 30 0.001 33.0 2.9 19 135-153 28-46 (204)
321 3iby_A Ferrous iron transport 28.1 27 0.00091 35.0 2.5 15 215-229 48-62 (256)
322 1vg8_A RAS-related protein RAB 28.1 42 0.0014 31.8 3.9 16 137-152 8-23 (207)
323 2qnr_A Septin-2, protein NEDD5 28.1 7.5 0.00026 40.3 -1.7 23 132-154 13-35 (301)
324 1w36_D RECD, exodeoxyribonucle 28.0 8.8 0.0003 44.3 -1.3 19 137-155 164-182 (608)
325 3sop_A Neuronal-specific septi 28.0 7.6 0.00026 39.5 -1.7 18 137-154 2-19 (270)
326 2orw_A Thymidine kinase; TMTK, 27.6 6.5 0.00022 37.3 -2.1 17 139-155 5-21 (184)
327 1j8m_F SRP54, signal recogniti 27.5 28 0.00094 35.8 2.5 17 139-155 100-116 (297)
328 2r8r_A Sensor protein; KDPD, P 27.3 7.8 0.00027 38.0 -1.6 19 138-156 7-25 (228)
329 2d7d_A Uvrabc system protein B 27.0 36 0.0012 39.6 3.7 65 105-174 5-76 (661)
330 1gwn_A RHO-related GTP-binding 27.0 50 0.0017 31.4 4.3 16 137-152 28-43 (205)
331 3umf_A Adenylate kinase; rossm 26.8 13 0.00044 36.3 -0.1 15 138-152 30-44 (217)
332 1znw_A Guanylate kinase, GMP k 26.8 8.6 0.00029 37.2 -1.4 15 139-153 22-36 (207)
333 1wf3_A GTP-binding protein; GT 26.7 53 0.0018 33.7 4.5 16 138-153 8-23 (301)
334 2q3h_A RAS homolog gene family 26.6 52 0.0018 30.9 4.3 17 137-153 20-36 (201)
335 1z6g_A Guanylate kinase; struc 26.6 8.5 0.00029 37.6 -1.5 15 139-153 25-39 (218)
336 2qor_A Guanylate kinase; phosp 26.6 13 0.00044 35.8 -0.2 15 138-152 13-27 (204)
337 3qne_A Seryl-tRNA synthetase, 26.5 2.9E+02 0.01 30.2 10.5 9 890-898 245-253 (485)
338 1odf_A YGR205W, hypothetical 3 26.5 23 0.00079 36.3 1.7 18 135-152 29-46 (290)
339 2pnv_A Small conductance calci 26.5 1.6E+02 0.0054 20.2 5.3 31 826-856 10-40 (43)
340 3sr0_A Adenylate kinase; phosp 26.4 13 0.00043 36.0 -0.3 14 139-152 2-15 (206)
341 3gj0_A GTP-binding nuclear pro 26.4 26 0.00087 33.9 2.0 17 137-153 15-31 (221)
342 3i5x_A ATP-dependent RNA helic 26.3 22 0.00074 40.5 1.6 24 130-153 104-127 (563)
343 2jlq_A Serine protease subunit 26.3 21 0.00071 39.4 1.4 24 129-153 12-35 (451)
344 3cm0_A Adenylate kinase; ATP-b 26.0 14 0.00047 34.7 -0.1 15 139-153 6-20 (186)
345 2j0v_A RAC-like GTP-binding pr 25.9 53 0.0018 31.3 4.2 16 137-152 9-24 (212)
346 2rep_A Kinesin-like protein KI 25.8 11 0.00039 40.1 -0.8 21 7-27 141-161 (376)
347 2gk6_A Regulator of nonsense t 25.7 14 0.00046 42.9 -0.3 19 138-156 196-214 (624)
348 2j41_A Guanylate kinase; GMP, 25.6 14 0.00048 35.3 -0.1 14 139-152 8-21 (207)
349 2a5j_A RAS-related protein RAB 25.4 34 0.0012 32.0 2.6 15 139-153 23-37 (191)
350 2k48_A Nucleoprotein; viral pr 25.4 2.9E+02 0.0098 22.8 11.1 65 693-757 35-104 (107)
351 2rhm_A Putative kinase; P-loop 25.4 13 0.00046 35.0 -0.3 16 138-153 6-21 (193)
352 1knq_A Gluconate kinase; ALFA/ 25.3 14 0.00049 34.2 -0.1 15 138-152 9-23 (175)
353 2i4i_A ATP-dependent RNA helic 25.2 23 0.0008 38.2 1.6 20 131-152 48-67 (417)
354 1y63_A LMAJ004144AAA protein; 25.1 14 0.00049 34.7 -0.2 16 138-153 11-26 (184)
355 2vli_A Antibiotic resistance p 25.0 17 0.0006 33.8 0.4 15 138-152 6-20 (183)
356 2pms_C Pneumococcal surface pr 25.0 3.3E+02 0.011 23.4 9.4 95 482-589 11-122 (125)
357 2yy0_A C-MYC-binding protein; 24.9 1.3E+02 0.0043 21.7 4.8 31 484-514 19-49 (53)
358 2i3b_A HCR-ntpase, human cance 24.9 9.6 0.00033 36.3 -1.5 16 139-154 3-18 (189)
359 1e9r_A Conjugal transfer prote 24.9 9.7 0.00033 41.9 -1.6 18 137-154 53-70 (437)
360 2ap3_A Conserved hypothetical 24.8 4.4E+02 0.015 24.8 14.9 18 793-810 158-175 (199)
361 3q3j_B RHO-related GTP-binding 24.8 65 0.0022 30.8 4.6 16 137-152 27-42 (214)
362 2jyp_A Aragonite protein AP7; 24.7 31 0.001 21.1 1.3 15 6-20 17-31 (36)
363 2db3_A ATP-dependent RNA helic 24.7 24 0.00082 38.6 1.5 21 131-153 89-109 (434)
364 1s96_A Guanylate kinase, GMP k 24.6 10 0.00035 37.1 -1.4 15 139-153 18-32 (219)
365 1svm_A Large T antigen; AAA+ f 24.5 29 0.00098 37.1 2.1 17 137-153 169-185 (377)
366 2ehv_A Hypothetical protein PH 24.5 11 0.00037 37.5 -1.3 18 138-155 31-48 (251)
367 3pxi_A Negative regulator of g 24.4 32 0.0011 40.8 2.7 37 115-152 494-536 (758)
368 1gm5_A RECG; helicase, replica 24.3 33 0.0011 40.6 2.7 33 119-151 371-403 (780)
369 2atx_A Small GTP binding prote 24.2 58 0.002 30.4 4.1 58 140-227 21-78 (194)
370 1jcd_A Major outer membrane li 24.2 2E+02 0.0068 20.6 8.1 47 700-746 4-50 (52)
371 1gd2_E Transcription factor PA 24.1 1.7E+02 0.0057 22.5 5.6 43 713-755 28-70 (70)
372 3kbt_A Beta-I spectrin, spectr 24.1 5.7E+02 0.019 25.8 35.2 262 591-862 37-326 (326)
373 2yy0_A C-MYC-binding protein; 24.0 1.7E+02 0.0058 21.0 5.3 31 577-607 19-49 (53)
374 2gj8_A MNME, tRNA modification 24.0 64 0.0022 29.5 4.2 58 140-227 7-64 (172)
375 1rif_A DAR protein, DNA helica 23.9 16 0.00056 37.2 -0.1 24 126-151 119-142 (282)
376 3cpj_B GTP-binding protein YPT 23.8 55 0.0019 31.6 3.9 59 140-227 16-74 (223)
377 1tev_A UMP-CMP kinase; ploop, 23.7 16 0.00055 34.5 -0.2 14 139-152 5-18 (196)
378 1nks_A Adenylate kinase; therm 23.7 15 0.00053 34.5 -0.3 14 139-152 3-16 (194)
379 3lfu_A DNA helicase II; SF1 he 23.6 14 0.00046 43.1 -0.8 25 130-154 15-39 (647)
380 2gza_A Type IV secretion syste 23.6 11 0.00037 40.2 -1.5 18 137-154 175-192 (361)
381 1xti_A Probable ATP-dependent 23.5 27 0.00092 37.3 1.6 24 126-151 36-59 (391)
382 1ses_A Seryl-tRNA synthetase; 23.4 2.7E+02 0.0092 29.9 9.6 93 646-740 4-97 (421)
383 4h1g_A Maltose binding protein 23.4 19 0.00066 42.3 0.5 23 2-24 470-499 (715)
384 1w4r_A Thymidine kinase; type 23.4 20 0.00067 34.2 0.4 24 128-151 11-34 (195)
385 1uf9_A TT1252 protein; P-loop, 23.2 18 0.00061 34.5 0.1 20 133-152 4-23 (203)
386 1e6c_A Shikimate kinase; phosp 23.2 16 0.00055 33.7 -0.2 14 139-152 4-17 (173)
387 1lwu_C Fibrinogen gamma chain; 23.2 2E+02 0.0069 29.5 8.0 55 703-757 1-55 (323)
388 2dr3_A UPF0273 protein PH0284; 23.1 24 0.00081 34.8 1.0 25 127-151 10-37 (247)
389 1moz_A ARL1, ADP-ribosylation 22.9 31 0.0011 31.8 1.8 29 123-151 3-32 (183)
390 2x2e_A Dynamin-1; nitration, h 22.9 28 0.00095 36.8 1.5 71 140-224 34-139 (353)
391 1htw_A HI0065; nucleotide-bind 22.8 11 0.00038 34.7 -1.4 16 139-154 35-50 (158)
392 3t61_A Gluconokinase; PSI-biol 22.8 20 0.0007 34.2 0.4 20 133-152 14-33 (202)
393 2q6q_A Spindle POLE BODY compo 22.8 2.4E+02 0.0083 21.1 8.1 70 693-762 3-72 (74)
394 1ses_A Seryl-tRNA synthetase; 22.6 2.5E+02 0.0085 30.2 9.1 80 804-883 28-108 (421)
395 2iyv_A Shikimate kinase, SK; t 22.6 16 0.00056 34.2 -0.3 14 139-152 4-17 (184)
396 1xx6_A Thymidine kinase; NESG, 22.6 9.8 0.00033 36.3 -1.9 18 139-156 10-27 (191)
397 3dm5_A SRP54, signal recogniti 22.5 39 0.0013 36.8 2.7 42 112-153 66-116 (443)
398 1via_A Shikimate kinase; struc 22.5 17 0.00058 33.8 -0.2 13 140-152 7-19 (175)
399 3m91_A Proteasome-associated A 22.3 2.2E+02 0.0074 20.3 7.2 42 713-754 8-49 (51)
400 1sjj_A Actinin; 3-helix bundle 22.2 1E+03 0.035 28.1 30.2 269 486-765 337-629 (863)
401 3a8t_A Adenylate isopentenyltr 22.2 21 0.0007 37.4 0.3 13 139-151 42-54 (339)
402 1sxj_A Activator 1 95 kDa subu 22.1 20 0.00069 40.3 0.2 18 135-152 75-92 (516)
403 4a2p_A RIG-I, retinoic acid in 22.0 29 0.00099 39.2 1.6 24 126-151 13-36 (556)
404 3e1s_A Exodeoxyribonuclease V, 22.0 15 0.00052 41.9 -0.8 34 111-154 188-221 (574)
405 2cdn_A Adenylate kinase; phosp 21.8 22 0.00074 33.9 0.4 22 131-152 14-35 (201)
406 4e61_A Protein BIM1; EB1-like 21.8 3.5E+02 0.012 22.5 8.9 55 486-540 6-60 (106)
407 3tif_A Uncharacterized ABC tra 21.8 12 0.00042 37.0 -1.4 16 139-154 33-48 (235)
408 3a4m_A L-seryl-tRNA(SEC) kinas 21.8 18 0.00063 36.3 -0.2 14 139-152 6-19 (260)
409 2wbe_C Bipolar kinesin KRP-130 21.6 18 0.00062 38.5 -0.3 21 4-24 119-150 (373)
410 1deb_A APC protein, adenomatou 21.6 2.1E+02 0.0073 19.9 8.1 48 806-853 5-52 (54)
411 1sq5_A Pantothenate kinase; P- 21.4 24 0.00082 36.5 0.6 37 118-154 44-97 (308)
412 3i8s_A Ferrous iron transport 21.3 34 0.0012 34.6 1.8 59 140-229 6-64 (274)
413 4eun_A Thermoresistant glucoki 21.3 19 0.00066 34.3 -0.1 14 139-152 31-44 (200)
414 3crm_A TRNA delta(2)-isopenten 21.3 25 0.00086 36.5 0.7 19 133-151 1-19 (323)
415 2pt5_A Shikimate kinase, SK; a 21.2 19 0.00067 33.0 -0.1 14 139-152 2-15 (168)
416 3foz_A TRNA delta(2)-isopenten 21.1 23 0.00077 36.6 0.4 13 139-151 12-24 (316)
417 2bwj_A Adenylate kinase 5; pho 21.1 18 0.00062 34.3 -0.3 14 139-152 14-27 (199)
418 3sqw_A ATP-dependent RNA helic 21.1 31 0.0011 39.3 1.6 26 126-151 49-74 (579)
419 2r2a_A Uncharacterized protein 21.1 19 0.00063 34.6 -0.3 13 140-152 8-20 (199)
420 2xzl_A ATP-dependent helicase 21.0 19 0.00066 42.9 -0.2 27 126-154 366-392 (802)
421 3a1s_A Iron(II) transport prot 21.0 84 0.0029 31.3 4.7 59 140-229 8-66 (258)
422 3fb4_A Adenylate kinase; psych 21.0 19 0.00064 34.8 -0.3 13 140-152 3-15 (216)
423 2yvu_A Probable adenylyl-sulfa 21.0 22 0.00076 33.4 0.2 28 125-152 1-28 (186)
424 1ukz_A Uridylate kinase; trans 20.9 20 0.00067 34.3 -0.2 14 139-152 17-30 (203)
425 3exa_A TRNA delta(2)-isopenten 20.7 23 0.0008 36.5 0.4 13 139-151 5-17 (322)
426 1aky_A Adenylate kinase; ATP:A 20.6 19 0.00066 34.9 -0.3 13 140-152 7-19 (220)
427 1qvr_A CLPB protein; coiled co 20.5 45 0.0016 40.1 2.9 38 115-152 561-603 (854)
428 2c95_A Adenylate kinase 1; tra 20.4 19 0.00066 34.0 -0.3 14 139-152 11-24 (196)
429 2bbw_A Adenylate kinase 4, AK4 20.4 20 0.0007 35.5 -0.2 14 139-152 29-42 (246)
430 3tqc_A Pantothenate kinase; bi 20.4 27 0.00091 36.4 0.7 38 117-154 72-109 (321)
431 1zxa_A CGMP-dependent protein 20.3 1.5E+02 0.005 22.5 4.5 40 814-853 14-53 (67)
432 2oqq_A Transcription factor HY 20.2 2.1E+02 0.007 19.3 6.3 37 730-766 5-41 (42)
433 1zd8_A GTP:AMP phosphotransfer 20.2 19 0.00064 35.2 -0.5 13 140-152 10-22 (227)
434 4gl2_A Interferon-induced heli 20.2 33 0.0011 40.2 1.6 24 126-151 13-36 (699)
435 3r7w_A Gtpase1, GTP-binding pr 20.1 88 0.003 32.1 4.7 59 140-227 6-64 (307)
436 1fuu_A Yeast initiation factor 20.1 21 0.00072 38.2 -0.1 24 126-151 49-72 (394)
437 1f2t_A RAD50 ABC-ATPase; DNA d 20.1 25 0.00086 31.7 0.4 15 137-151 23-37 (149)
438 1vma_A Cell division protein F 20.1 15 0.00053 37.9 -1.2 20 135-154 102-121 (306)
439 3dl0_A Adenylate kinase; phosp 20.1 20 0.00069 34.6 -0.3 13 140-152 3-15 (216)
440 3he5_B Synzip2; heterodimeric 20.0 2E+02 0.0069 19.1 6.3 45 712-756 8-52 (52)
441 2v3c_C SRP54, signal recogniti 20.0 59 0.002 35.4 3.4 41 113-153 65-115 (432)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=6.3e-65 Score=542.35 Aligned_cols=271 Identities=25% Similarity=0.418 Sum_probs=213.4
Q ss_pred cccccccccccccCCCcccccCCCCceEEEe-CCCeEEEcCCCCc--cccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVL-DQKSIMFKPMKDM--KCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN 127 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~ 127 (932)
++.|++ |+||+++.|...+...|+.+. +..+|.+.+|... ..........|.||+||++.++|.+||+.++.|
T Consensus 5 ~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p 80 (350)
T 2vvg_A 5 NIKVIV----RCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKP 80 (350)
T ss_dssp BCEEEE----EECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHH
T ss_pred CeEEEE----EeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHH
Confidence 455555 999999999766777788765 4568888877521 111123345899999999999999999999999
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------- 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------- 156 (932)
+|+++++|||+||||||||||||||||.|
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 160 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK 160 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEE
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcC
Confidence 99999999999999999999999999998
Q ss_pred ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcceeEEEEEEE
Q psy16994 157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEELIMMSSFDIC 220 (932)
Q Consensus 157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~~~~s~l~~v 220 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.... +......|+|+||
T Consensus 161 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lV 240 (350)
T 2vvg_A 161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLV 240 (350)
T ss_dssp ECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEE
T ss_pred ceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEE
Confidence 788999999999999999999999999999999999999999999987443 3345678999999
Q ss_pred eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994 221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300 (932)
Q Consensus 221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~ 300 (932)
|||||||..++++.|.+++|+.+||+||++||+||.+|..++ .|||||+||||+||+|+|||++ +|+||+||
T Consensus 241 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsLgGns-kt~mI~~i 312 (350)
T 2vvg_A 241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-------THIPYRDSKLTRLLQDSLGGNS-KTLMCANI 312 (350)
T ss_dssp ECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-------SSCCGGGCHHHHHTTTTTTSSS-EEEEEEEE
T ss_pred eCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-------CCCCccccHHHHHHHHhcCCCc-cEEEEEEe
Confidence 999999999999999999999999999999999999999864 8999999999999999999999 99999999
Q ss_pred CCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994 301 NASPAYAEETVQVLKISSVARDLLTVAKPRHLP 333 (932)
Q Consensus 301 ~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~ 333 (932)
+|...+++||++||+||++|+.|++.|..|..|
T Consensus 313 sP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~ 345 (350)
T 2vvg_A 313 SPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345 (350)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred CCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence 999999999999999999999999999988554
No 2
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-65 Score=547.44 Aligned_cols=271 Identities=27% Similarity=0.408 Sum_probs=192.6
Q ss_pred chhhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994 47 SKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVH 126 (932)
Q Consensus 47 ~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~ 126 (932)
....++.|++ ||||+.+.|.......|+...++.++.+.++.. ......|.||+||++.++|.+||+.++.
T Consensus 18 ~~~~~irV~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~-----~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~ 88 (388)
T 3bfn_A 18 GPPARVRVAV----RLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN-----HQETLKYQFDAFYGERSTQQDIYAGSVQ 88 (388)
T ss_dssp SCCCCCEEEE----EECCCC----------------------------------CEEEEECSEEECTTCCHHHHHHHHTG
T ss_pred CCCCCEEEEE----ECCCCChhhhccCCCceEEecCCCeEEEecCCC-----CCCeeEEEcceEecCCCCHhHHHHHHHH
Confidence 3445556665 999999998666566788777777776654431 1234579999999999999999999999
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------- 156 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------- 156 (932)
|+|+++++|||+||||||||||||||||+|
T Consensus 89 plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 168 (388)
T 3bfn_A 89 PILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLD 168 (388)
T ss_dssp GGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSS
T ss_pred HHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhc
Confidence 999999999999999999999999999988
Q ss_pred --------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEE
Q psy16994 157 --------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSS 216 (932)
Q Consensus 157 --------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~ 216 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.....+.....|+
T Consensus 169 ~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~sk 248 (388)
T 3bfn_A 169 PASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGK 248 (388)
T ss_dssp CSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEE
T ss_pred cCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEE
Confidence 788999999999999999999999999999999999999999999988655445567899
Q ss_pred EEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEE
Q psy16994 217 FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296 (932)
Q Consensus 217 l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~ 296 (932)
|+|||||||||..++++.|.+++|+++||+||++||+||.+|..+. .|||||+||||+||+|+|||++ +|+|
T Consensus 249 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-------~hVPYRdSkLTrlLqdsLgGns-kT~m 320 (388)
T 3bfn_A 249 LYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-------PRVPYRDSKLTRLLQDSLGGSA-HSIL 320 (388)
T ss_dssp EEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTTTSSSTTC-EEEE
T ss_pred EEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-------CCCcCcccHHHHHHHHhhCCCc-cEEE
Confidence 9999999999999999999999999999999999999999999754 7999999999999999999999 9999
Q ss_pred EEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCCC
Q psy16994 297 IVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPP 334 (932)
Q Consensus 297 i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~~ 334 (932)
|+||+|...+++||++||+||++|+.|++.|+.|..+.
T Consensus 321 Ia~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~ 358 (388)
T 3bfn_A 321 IANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQ 358 (388)
T ss_dssp EEEECCSGGGHHHHHHHHHHHCSEEEEC----------
T ss_pred EEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCC
Confidence 99999999999999999999999999999998875443
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.1e-64 Score=540.36 Aligned_cols=265 Identities=27% Similarity=0.430 Sum_probs=241.7
Q ss_pred hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHH
Q psy16994 49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM 128 (932)
Q Consensus 49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~ 128 (932)
.+++.|++ |+||+++.|...+...|+.+.++.++.+.+. .....|.||+||++.++|.+||+.++.|+
T Consensus 5 ~~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 72 (355)
T 1goj_A 5 ANSIKVVA----RFRPQNRVEIESGGQPIVTFQGPDTCTVDSK--------EAQGSFTFDRVFDMSCKQSDIFDFSIKPT 72 (355)
T ss_dssp SCBCEEEE----EECCCCHHHHTTTCCBCEEECSTTEEEECST--------TCCEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred CCCeEEEE----ECCCCChHHhhcCCceEEEEcCCCeEEEccC--------CCccEEeeCeEECCCCccHHHHHHHHHHH
Confidence 34556665 9999999997777778888888777766432 23458999999999999999999999999
Q ss_pred HHHhcCCCCceeeecccccCCCcEEEec----------------------------------------------------
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------- 156 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------- 156 (932)
|+++++|||+||||||||||||||||+|
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 152 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP 152 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTST
T ss_pred HHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccC
Confidence 9999999999999999999999999987
Q ss_pred -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994 157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF 217 (932)
Q Consensus 157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l 217 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... .....|+|
T Consensus 153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skL 231 (355)
T 1goj_A 153 QNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET-GSAKSGQL 231 (355)
T ss_dssp TCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT-TEEEEEEE
T ss_pred ccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC-CceeeeEE
Confidence 7889999999999999999999999999999999999999999999886542 45678999
Q ss_pred EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994 218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297 (932)
Q Consensus 218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i 297 (932)
+|||||||||+.++++.|.+++|+.+||+||++||+||.+|..+. ..|||||+||||+||+|+|||++ +|+||
T Consensus 232 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~------~~hvPyRdSkLT~lLqdsLgGns-~t~mI 304 (355)
T 1goj_A 232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK------SSHVPYRDSKLTRILQESLGGNS-RTTLI 304 (355)
T ss_dssp EEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS------CSCCCGGGCHHHHHTGGGTTSSC-EEEEE
T ss_pred EEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCC------CCCCCCccCHHHHHHHHHhCCCC-cEEEE
Confidence 999999999999999999999999999999999999999999853 47999999999999999999999 99999
Q ss_pred EecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994 298 VNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP 333 (932)
Q Consensus 298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~ 333 (932)
+||+|...+++||++||+||++|+.|++.|+.|..+
T Consensus 305 ~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~ 340 (355)
T 1goj_A 305 INCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL 340 (355)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSS
T ss_pred EEECcccccHHHHHHHHHHHHHHhhccCCceeCCCC
Confidence 999999999999999999999999999999987544
No 4
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.7e-64 Score=541.50 Aligned_cols=273 Identities=28% Similarity=0.476 Sum_probs=229.8
Q ss_pred chhhcccccccccccccCCCcccccCCCCceEEEe-CCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHH
Q psy16994 47 SKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVL-DQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIV 125 (932)
Q Consensus 47 ~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~ 125 (932)
...+++.|++ |+||+++.|...+...|+.+. +..+|.+.+|... .......|.||+||++.++|.+||+.++
T Consensus 18 ~~~~~irV~v----RvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~---~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~ 90 (372)
T 3b6u_A 18 GSSESVRVVV----RCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT---AHEMPKTFTFDAVYDWNAKQFELYDETF 90 (372)
T ss_dssp ---CBCEEEE----EECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT---TTCCCEEEECSEEECTTCCHHHHHHHTH
T ss_pred CCCCCeEEEE----EcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC---CCCCceEEEcCeEeCCcCchHHHHHHHH
Confidence 3344556665 999999999766677777765 4577888777521 1234558999999999999999999999
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------- 156 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------- 156 (932)
.|+|+++++|||+||||||||||||||||.|
T Consensus 91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 170 (372)
T 3b6u_A 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS 170 (372)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCC
Confidence 9999999999999999999999999999988
Q ss_pred ---------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--CCccee
Q psy16994 157 ---------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEELIM 213 (932)
Q Consensus 157 ---------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~~~~~~ 213 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.... +.....
T Consensus 171 ~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~ 250 (372)
T 3b6u_A 171 KDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR 250 (372)
T ss_dssp SCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEE
T ss_pred CCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceE
Confidence 788999999999999999999999999999999999999999999987532 345567
Q ss_pred EEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCe
Q psy16994 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSST 293 (932)
Q Consensus 214 ~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~ 293 (932)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++ ..|||||+||||+||+|+|||++ +
T Consensus 251 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~------~~hvPyRdSkLT~lLqdsLgGns-k 323 (372)
T 3b6u_A 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK------STHIPYRDSKLTRLLQDSLGGNA-K 323 (372)
T ss_dssp EEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---------CCCGGGSHHHHHTTTTTTSSS-E
T ss_pred EEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCC------CCCCcccccHHHHHHHHhcCCCc-c
Confidence 8999999999999999999999999999999999999999999999753 47999999999999999999999 9
Q ss_pred eEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994 294 VKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLP 333 (932)
Q Consensus 294 ~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~ 333 (932)
|+||+||+|...+++||++||+||++|+.|++.|..|..+
T Consensus 324 t~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~ 363 (372)
T 3b6u_A 324 TVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP 363 (372)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--
T ss_pred EEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCCh
Confidence 9999999999999999999999999999999999987543
No 5
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=7.4e-64 Score=550.26 Aligned_cols=312 Identities=26% Similarity=0.377 Sum_probs=216.8
Q ss_pred ccchhHHHhhcCCCCCCCCCCccCCccccccccCchhhcccccccccccccCCCcccccCCCCceEEEeC-CCeEEEcCC
Q psy16994 13 IPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD-QKSIMFKPM 91 (932)
Q Consensus 13 ~pr~ldviFnSi~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~ 91 (932)
+|-+|++.+...-....++.+..++.............++.|++ ||||+++.|...+...++.+.+ ...+++..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vrV~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~ 76 (443)
T 2owm_A 1 MPNSLDVHQRQTRSNVSTPTLRPRDDTASSFVSKDPGANVRVVV----RVRAFLPRELERNAECIVEMDPATERTSLLVP 76 (443)
T ss_dssp ---------------------------------CCCCEECEEEE----EEECCCHHHHHTTCCCCEEECSSSCEEEECCC
T ss_pred CCccccccccccccCCCCCCCCcccCCCCCCccCCCCCCeEEEE----EeCCCChHHhhcCCceEEEEcCCCccEEEecC
Confidence 58889998888654443322222222222333333444556655 9999999996666555555543 345555554
Q ss_pred CCccc--------cCCCCCcceecceecCC-------CCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 92 KDMKC--------SITDTCNLYRFSNIYGP-------HTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 92 ~~~~~--------~~~~~~~~f~fd~v~~~-------~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
..... ......+.|.||+||++ .++|.+||+.++.|+|+++++|||+||||||||||||||||+|
T Consensus 77 ~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 77 QETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp C---------------CCCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTC
T ss_pred CCcccccccccccccccCCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeec
Confidence 31110 01123458999999976 4899999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------------------------------ceEEE
Q psy16994 157 ---------------------------------------------------------------------------LTYVN 161 (932)
Q Consensus 157 ---------------------------------------------------------------------------l~~~~ 161 (932)
|+++.
T Consensus 157 ~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~ 236 (443)
T 2owm_A 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVP 236 (443)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEE
T ss_pred CCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEE
Confidence 77899
Q ss_pred ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEEEEEeCCCCccccccccchhhh
Q psy16994 162 VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSFDICDLAGAERQKRAHTSGDRL 238 (932)
Q Consensus 162 v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l~~vDLagse~~~~~~~~~~~~ 238 (932)
|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.... +......|+|+|||||||||+.++++.|.|+
T Consensus 237 V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rl 316 (443)
T 2owm_A 237 VRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRL 316 (443)
T ss_dssp CCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC-----------
T ss_pred cCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccc
Confidence 9999999999999999999999999999999999999999987432 2345578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC---------------CCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCC
Q psy16994 239 REARTINSSLHVLARCFNVLRENNGLK---------------ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNAS 303 (932)
Q Consensus 239 ~e~~~in~sl~~l~~~i~~l~~~~~~~---------------~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~ 303 (932)
+|+.+||+||++||+||.+|+.++... .....|||||+||||+||+|+|||++ +|+||+||+|.
T Consensus 317 kE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGns-kT~mIa~iSP~ 395 (443)
T 2owm_A 317 REGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNS-KTAMIACISPT 395 (443)
T ss_dssp ---CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSC-EEEEEEEECSS
T ss_pred cchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCC-cEEEEEEeccc
Confidence 999999999999999999998764210 01246999999999999999999999 99999999995
Q ss_pred cCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994 304 PAYAEETVQVLKISSVARDLLTVAKPRH 331 (932)
Q Consensus 304 ~~~~~et~~~l~~~~~~~~i~~~~~~~~ 331 (932)
+|+||++||+||++|+.|++.|+.|.
T Consensus 396 --~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 396 --DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp --CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred --cHHHHHHHHHHHHHHhhccccceecc
Confidence 59999999999999999999999885
No 6
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.4e-64 Score=536.67 Aligned_cols=259 Identities=30% Similarity=0.500 Sum_probs=201.8
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc-cc------------cCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM-KC------------SITDTCNLYRFSNIYGPHTTQAELFQNIVH 126 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~-~~------------~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~ 126 (932)
+|+||++..|...+...++.+.++.++.+.|+... .. ........|.||+||++.++|.+||+.++.
T Consensus 16 vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~ 95 (355)
T 3lre_A 16 VRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTK 95 (355)
T ss_dssp EEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHHHHTTHH
T ss_pred EEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHHHHHHHH
Confidence 39999999998778888999888887776654311 00 001233479999999999999999999999
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------- 156 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------- 156 (932)
|+|+++++|||+||||||||||||||||+|
T Consensus 96 plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 175 (355)
T 3lre_A 96 PILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG 175 (355)
T ss_dssp HHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEEESSSCCC
T ss_pred HHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEEECcCCCC
Confidence 999999999999999999999999999998
Q ss_pred ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC--CcceeEEEEE
Q psy16994 157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS--EELIMMSSFD 218 (932)
Q Consensus 157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~--~~~~~~s~l~ 218 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... ......|+|+
T Consensus 176 ~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~ 255 (355)
T 3lre_A 176 PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMS 255 (355)
T ss_dssp CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEE
T ss_pred CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEE
Confidence 7888999999999999999999999999999999999999999999885432 3445679999
Q ss_pred EEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEE
Q psy16994 219 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIV 298 (932)
Q Consensus 219 ~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~ 298 (932)
|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++. +..|||||+||||+||+|+|||++ +|+||+
T Consensus 256 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~lL~dsLgGns-kt~mIa 330 (355)
T 3lre_A 256 LIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR----KNQHIPYRNSKLTRLLKDSLGGNC-QTIMIA 330 (355)
T ss_dssp EEECCCCCC-----------------CHHHHHHHHHHHHHC------------CCGGGSHHHHHTTTTSSTTS-EEEEEE
T ss_pred EEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCcCCcccCHHHHHHHHhcCCCc-eEEEEE
Confidence 999999999999999999999999999999999999999998642 347999999999999999999999 999999
Q ss_pred ecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994 299 NVNASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 299 ~~~p~~~~~~et~~~l~~~~~~~~i 323 (932)
||+|+..+|+||++||+||++||+|
T Consensus 331 ~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 331 AVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 7
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=5.9e-64 Score=537.97 Aligned_cols=259 Identities=28% Similarity=0.451 Sum_probs=217.4
Q ss_pred hhcccccccccccccCCCcccccCCCCceEEEeC---CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHH
Q psy16994 49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD---QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIV 125 (932)
Q Consensus 49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~ 125 (932)
.+++.|++ |+||+.+.|...+...++.+++ ..++.+ .++.|.||+||++.++|.+||+.++
T Consensus 10 ~~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~------------~~~~f~FD~Vf~~~~~Q~~Vy~~~~ 73 (365)
T 2y65_A 10 EDSIKVVC----RFRPLNDSEEKAGSKFVVKFPNNVEENCISI------------AGKVYLFDKVFKPNASQEKVYNEAA 73 (365)
T ss_dssp EEECEEEE----EECCCCHHHHHTTCCBCEECCSSSTTCEEEE------------TTEEEECSEEECTTCCHHHHHHHHT
T ss_pred CCCeEEEE----EcCcCChhHhccCCceEEEeCCCCCCcEEEE------------CCEEEeCceEecCCCCHHHHHHHhh
Confidence 34556655 9999999996655555666554 234433 2347999999999999999999999
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------- 156 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------- 156 (932)
.|+|+++++|||+||||||||||||||||.|
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL 153 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL 153 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETT
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecc
Confidence 9999999999999999999999999999987
Q ss_pred ---------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEE
Q psy16994 157 ---------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMS 215 (932)
Q Consensus 157 ---------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s 215 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... .....|
T Consensus 154 ~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~s 232 (365)
T 2y65_A 154 DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN-QKKLSG 232 (365)
T ss_dssp CTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-CCEEEE
T ss_pred cCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-CCEeEE
Confidence 7889999999999999999999999999999999999999999999876542 345789
Q ss_pred EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994 216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295 (932)
Q Consensus 216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~ 295 (932)
+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ ..|||||+||||+||+|+|||++ +|+
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~------~~hvPyRdSkLT~lLqdsLgGns-kt~ 305 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN------KTHIPYRDSKLTRILQESLGGNA-RTT 305 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCC------CSCCCGGGCHHHHHTGGGTTSSS-EEE
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCccccCHHHHHHHhhcCCCc-cEE
Confidence 99999999999999999999999999999999999999999999853 47999999999999999999999 999
Q ss_pred EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCC
Q psy16994 296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRH 331 (932)
Q Consensus 296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~ 331 (932)
||+||+|+..+++||++||+||++|+.|++.|+.|.
T Consensus 306 mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~ 341 (365)
T 2y65_A 306 IVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNE 341 (365)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCC
Confidence 999999999999999999999999999999998763
No 8
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.7e-63 Score=532.67 Aligned_cols=262 Identities=26% Similarity=0.422 Sum_probs=230.8
Q ss_pred cccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLE 130 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~ 130 (932)
++.|++ ||||+.+.|.......++...+..++..... ......|.||+||++.++|.+||+. +.|+|+
T Consensus 6 ~i~V~v----RvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~ 73 (369)
T 3cob_A 6 KIRVYC----RLRPLCEKEIIAKERNAIRSVDEFTVEHLWK-------DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQ 73 (369)
T ss_dssp BCEEEE----EECCCCHHHHHTTCCBCEEECSSSEEEEECT-------TSCEEEEECSEEECTTCCHHHHHHT-TTHHHH
T ss_pred CeEEEE----ECCCCChhhccCCCcEEEEcCCcEEEEecCC-------CCCceEEecCEEECCCCCcceehhh-hhhhhH
Confidence 345554 9999999885544433333334434433211 1234589999999999999999999 799999
Q ss_pred HhcCCCCceeeecccccCCCcEEEec------------------------------------------------------
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------------ 156 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------------ 156 (932)
++++|||+||||||||||||||||+|
T Consensus 74 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 74 SAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred hhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 99999999999999999999999988
Q ss_pred ----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEE
Q psy16994 157 ----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDIC 220 (932)
Q Consensus 157 ----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~v 220 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|+||
T Consensus 154 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL~lV 232 (369)
T 3cob_A 154 KLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARGKLSFV 232 (369)
T ss_dssp CCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-TCCEEEEEEEEE
T ss_pred ceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-CCcEEEEEEEEE
Confidence 788999999999999999999999999999999999999999999988654 345678999999
Q ss_pred eCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEec
Q psy16994 221 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300 (932)
Q Consensus 221 DLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~ 300 (932)
|||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ .|||||+||||+||+|+|||++ +|+||+||
T Consensus 233 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsLgGns-kt~mIa~i 304 (369)
T 3cob_A 233 DLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-------QHIPYRNHKLTMLMSDSLGGNA-KTLMFVNI 304 (369)
T ss_dssp ECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-------SCCCGGGCHHHHHTTTTTTSSS-EEEEEEEE
T ss_pred eCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-------CcCCCcCCHHHHHHHHhcCCCc-cEEEEEEe
Confidence 999999999999999999999999999999999999999854 7999999999999999999999 99999999
Q ss_pred CCCcCcHHHHHHHHHHHHHhcccccccCCCCCC
Q psy16994 301 NASPAYAEETVQVLKISSVARDLLTVAKPRHLP 333 (932)
Q Consensus 301 ~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~ 333 (932)
+|+..+++||++||+||++|+.|++.|..|..+
T Consensus 305 sP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 305 SPAESNLDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred CCccccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 999999999999999999999999999887443
No 9
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-63 Score=537.78 Aligned_cols=264 Identities=28% Similarity=0.502 Sum_probs=220.7
Q ss_pred hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML 129 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v 129 (932)
+++.|++ ||||++..|.......++.+.++..+.+.++.. ......|.||+||++.++|.+||+.++.|+|
T Consensus 23 ~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv 93 (373)
T 2wbe_C 23 QNIQVYV----RVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD-----SKLTKKFTFDRSFGPESKQCDVYSVVVSPLI 93 (373)
T ss_dssp EECEEEE----EECCCCHHHHHHTCCBCEEEETTTEEEESSSSS-----STTCEEEECSEEECTTCCHHHHHHHHHHHHH
T ss_pred CCeEEEE----EcCCCChhhhccCCCceEEEcCCCeEEEecCCC-----CCCceEEeccEEeccccchhHHHHHHHHHHH
Confidence 4455555 999999998665667788888888887765431 1234589999999999999999999999999
Q ss_pred HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------- 156 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------- 156 (932)
+++++|||+||||||||||||||||+|
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~D 173 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCD 173 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEE
T ss_pred HHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEE
Confidence 999999999999999999999999986
Q ss_pred --------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC--C
Q psy16994 157 --------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--S 208 (932)
Q Consensus 157 --------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~--~ 208 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.....+ +
T Consensus 174 LL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 253 (373)
T 2wbe_C 174 LLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG 253 (373)
T ss_dssp SSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTT
T ss_pred CCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCC
Confidence 778899999999999999999999999999999999999999999987432 3
Q ss_pred CcceeEEEEEEEeCCCCccccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhc
Q psy16994 209 EELIMMSSFDICDLAGAERQKRAHTS-GDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL 287 (932)
Q Consensus 209 ~~~~~~s~l~~vDLagse~~~~~~~~-~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l 287 (932)
......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|..++ .|||||+||||+||+|+|
T Consensus 254 ~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsL 326 (373)
T 2wbe_C 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-------PHVPYRESKLTRLLQESL 326 (373)
T ss_dssp CCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-------SCCCGGGCHHHHHTHHHH
T ss_pred CcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-------CcCccccchHHHHHHHHh
Confidence 34567899999999999999999987 9999999999999999999999999854 899999999999999999
Q ss_pred CCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 288 SGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 288 ~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
||++ +|+||+||+|...+++||++||+||++|+.|++.|+.|
T Consensus 327 gGns-kt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN 368 (373)
T 2wbe_C 327 GGRT-KTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368 (373)
T ss_dssp HSSS-EEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred CCCc-eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceec
Confidence 9999 99999999999999999999999999999999999876
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.8e-63 Score=534.85 Aligned_cols=264 Identities=26% Similarity=0.426 Sum_probs=214.4
Q ss_pred cccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCC--------CChHHHHHHHHHHHHHHh
Q psy16994 61 ILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPH--------TTQAELFQNIVHNMLERY 132 (932)
Q Consensus 61 rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~--------~~q~~v~~~~~~~~v~~~ 132 (932)
||||++..|...+...++.+.+. ++.+.+|... ......|.||+||++. ++|.+||+.++.|+|+++
T Consensus 11 RvRP~~~~E~~~~~~~~v~~~~~-~~~i~~~~~~----~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~ 85 (366)
T 2zfi_A 11 RVRPFNSREMSRDSKCIIQMSGS-TTTIVNPKQP----KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHA 85 (366)
T ss_dssp EECCCCHHHHHTTCCBCEEEETT-EEEECCTTCT----TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHH
T ss_pred ECCCCChhhccCCCCeEEEECCC-cEEEeccCCC----CCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHH
Confidence 99999999866555555555554 4455444311 1234589999999987 899999999999999999
Q ss_pred cCCCCceeeecccccCCCcEEEec--------------------------------------------------------
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------------- 156 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------------- 156 (932)
++|||+||||||||||||||||+|
T Consensus 86 l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~ 165 (366)
T 2zfi_A 86 FEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGN 165 (366)
T ss_dssp HTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSC
T ss_pred hcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCC
Confidence 999999999999999999999988
Q ss_pred ---------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC---CCcceeEEEEE
Q psy16994 157 ---------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG---SEELIMMSSFD 218 (932)
Q Consensus 157 ---------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~---~~~~~~~s~l~ 218 (932)
|+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.... +......|+|+
T Consensus 166 l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~ 245 (366)
T 2zfi_A 166 LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS 245 (366)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEE
T ss_pred ceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEE
Confidence 788999999999999999999999999999999999999999999886332 12345689999
Q ss_pred EEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCCCccCCCCchHHhhhhhcCCCCCe
Q psy16994 219 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL-----KADKKKLIPFRDSKLTQIFQRSLSGLSST 293 (932)
Q Consensus 219 ~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~-----~~~~~~~vp~r~s~LT~ll~~~l~g~~~~ 293 (932)
|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.+ ...+..|||||+||||+||+|+|||++ +
T Consensus 246 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns-k 324 (366)
T 2zfi_A 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNS-R 324 (366)
T ss_dssp EEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTC-E
T ss_pred EEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCc-e
Confidence 9999999999999999999999999999999999999999985411 112458999999999999999999999 9
Q ss_pred eEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 294 VKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 294 ~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
|+||+||+|...+++||++||+||++|++|++.|+++
T Consensus 325 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 325 TAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 9999999999999999999999999999999998765
No 11
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-63 Score=530.95 Aligned_cols=265 Identities=26% Similarity=0.414 Sum_probs=223.8
Q ss_pred hhcccccccccccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994 49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN 127 (932)
Q Consensus 49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~ 127 (932)
.+++.|++ ||||++..|...+...++.+ .++.++... .....|.||+||++.++|.+||+.++.|
T Consensus 3 ~~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~i~~~----------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~p 68 (349)
T 1t5c_A 3 EGAVAVCV----RVRPLNSREESLGETAQVYWKTDNNVIYQV----------DGSKSFNFDRVFHGNETTKNVYEEIAAP 68 (349)
T ss_dssp CCCEEEEE----EECCCSCSSCTTTTCCCCCEEEETTEEEET----------TSSCEEECSCEECTTSCHHHHHHHTTHH
T ss_pred CCCEEEEE----ECCCCChhhhccCCCcEEEEeCCCCeEEEC----------CCCeEEECCEEECCCCCHHHHHHHHHHH
Confidence 34555555 99999999865444444433 334444332 1235899999999999999999999999
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------- 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------- 156 (932)
+|+++++|||+||||||||||||||||+|
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 148 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKM 148 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCC
Confidence 99999999999999999999999999998
Q ss_pred -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC----CcceeEE
Q psy16994 157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS----EELIMMS 215 (932)
Q Consensus 157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~----~~~~~~s 215 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+..... ......|
T Consensus 149 ~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~s 228 (349)
T 1t5c_A 149 KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVS 228 (349)
T ss_dssp CCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEE
T ss_pred CCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEE
Confidence 7889999999999999999999999999999999999999999999875432 2346789
Q ss_pred EEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeE
Q psy16994 216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVK 295 (932)
Q Consensus 216 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~ 295 (932)
+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ ...|||||+||||+||+|+|||++ +|+
T Consensus 229 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~~~hvPyRdSkLT~lLqdsLgGns-kt~ 302 (349)
T 1t5c_A 229 HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-----VGGFINYRDSKLTRILQNSLGGNA-KTR 302 (349)
T ss_dssp EEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTC-----CTTSSCGGGSHHHHHTGGGTTSSS-EEE
T ss_pred EEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccC-----CCCCCcccccHHHHHHHHhcCCCc-eEE
Confidence 99999999999999999999999999999999999999999999875 347999999999999999999999 999
Q ss_pred EEEecCCCcCcHHHHHHHHHHHHHhcccccccCCCCCCCC
Q psy16994 296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPP 335 (932)
Q Consensus 296 ~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~~~~~~ 335 (932)
||+||+|. +++||++||+||++|+.|++.|+.|..+.+
T Consensus 303 mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 303 IICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp EEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred EEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 99999996 589999999999999999999998855543
No 12
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.2e-63 Score=528.84 Aligned_cols=249 Identities=27% Similarity=0.434 Sum_probs=229.7
Q ss_pred hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML 129 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v 129 (932)
.++.|++ |+||+++.|...+...++.+.++.++.+. ++.|.||+||++.++|.+||+.++.|+|
T Consensus 7 ~~i~V~v----RvRP~~~~E~~~~~~~~~~~~~~~~~~~~------------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv 70 (325)
T 1bg2_A 7 CNIKVMC----RFRPLNESEVNRGDKYIAKFQGEDTVVIA------------SKPYAFDRVFQSSTSQEQVYNDCAKKIV 70 (325)
T ss_dssp CEEEEEE----EECCCCHHHHHHTCCBCCEEETTTEEEET------------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCEEEEE----EcCCCChhHhccCCeeEEEECCCCeEEEC------------CEEEECCeEeCCCCCHHHHHHHHhhhhH
Confidence 4455655 99999999976666677778888777662 2479999999999999999999999999
Q ss_pred HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------- 156 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------- 156 (932)
+++++|||+||||||||||||||||.|
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 150 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK 150 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC
T ss_pred HHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC
Confidence 999999999999999999999999997
Q ss_pred -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+... .....|+|+|
T Consensus 151 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~skl~l 229 (325)
T 1bg2_A 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-EQKLSGKLYL 229 (325)
T ss_dssp CSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT-CCEEEEEEEE
T ss_pred CCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC-CcEEEEEEEE
Confidence 7889999999999999999999999999999999999999999999876542 4457899999
Q ss_pred EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994 220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN 299 (932)
Q Consensus 220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~ 299 (932)
||||||||..++++.|.+++|+.+||+||++||+||.+|+.++ .|||||+||||+||+|+|||++ +|+||+|
T Consensus 230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqdsLgGns-~t~mia~ 301 (325)
T 1bg2_A 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-------TYVPYRDSKMTRILQDSLGGNC-RTTIVIC 301 (325)
T ss_dssp EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHGGGTSSSSC-EEEEEEE
T ss_pred EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-------CCCcccccHHHHHHHHHhCCCC-cEEEEEE
Confidence 9999999999999999999999999999999999999999854 8999999999999999999999 9999999
Q ss_pred cCCCcCcHHHHHHHHHHHHHhccc
Q psy16994 300 VNASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 300 ~~p~~~~~~et~~~l~~~~~~~~i 323 (932)
|+|+..+++||++||+||++|+.|
T Consensus 302 vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 302 CSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp ECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred ECCccccHHHHHHHHHHHHHhccC
Confidence 999999999999999999999986
No 13
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.4e-63 Score=535.83 Aligned_cols=266 Identities=29% Similarity=0.482 Sum_probs=217.8
Q ss_pred hcccccccccccccCCCcccccCCCCceEEEeC-CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD-QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM 128 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~ 128 (932)
.++.|++ |+||++..|...+...++.+.+ ..+|.+..+.. ......+.|.||+||++.++|.+||+.++.|+
T Consensus 8 ~~i~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~---~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 80 (359)
T 1x88_A 8 KNIQVVV----RCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL---ADKSSRKTYTFDMVFGASTKQIDVYRSVVCPI 80 (359)
T ss_dssp -CCEEEE----EECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE---TTEEEEEEEECSEEECTTCCHHHHHHHHHHHH
T ss_pred CCeEEEE----EeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc---cCCcCceEEeceEEEeccCchhHHHHHHHHHh
Confidence 3455555 9999999986666666776654 45565543210 00112358999999999999999999999999
Q ss_pred HHHhcCCCCceeeecccccCCCcEEEec----------------------------------------------------
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------------------- 156 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------------------- 156 (932)
|+++++|||+||||||||||||||||+|
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~ 160 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELF 160 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEE
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceee
Confidence 9999999999999999999999999975
Q ss_pred -----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC--
Q psy16994 157 -----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD-- 205 (932)
Q Consensus 157 -----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~-- 205 (932)
|+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..
T Consensus 161 DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~ 240 (359)
T 1x88_A 161 DLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 240 (359)
T ss_dssp ETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEEC
T ss_pred ehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEeccc
Confidence 6778899999999999999999999999999999999999999998763
Q ss_pred CCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhh
Q psy16994 206 PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQR 285 (932)
Q Consensus 206 ~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~ 285 (932)
..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|..++ .|||||+||||+||+|
T Consensus 241 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lLqd 313 (359)
T 1x88_A 241 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-------PHVPYRESKLTRILQD 313 (359)
T ss_dssp TTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTGG
T ss_pred CCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-------CCCccccchHHHHHHH
Confidence 333445678999999999999999999999999999999999999999999999753 8999999999999999
Q ss_pred hcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccCCC
Q psy16994 286 SLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 286 ~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
+|||++ +|+||+||+|+..+++||++||+||++|+.|++.|+.|
T Consensus 314 sLgGns-kt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn 357 (359)
T 1x88_A 314 SLGGRT-RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357 (359)
T ss_dssp GSSSSS-EEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC--
T ss_pred HhCCCC-eEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeC
Confidence 999999 99999999999999999999999999999999999876
No 14
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1e-62 Score=527.45 Aligned_cols=259 Identities=21% Similarity=0.319 Sum_probs=226.3
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHHHHHHhcC-CCC
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN-GED 137 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~-g~~ 137 (932)
+|+||++..|...+...|+.+.++.++.+.+|.. ...........|.||+||++.++|.+||+.++.|+|.++++ |+|
T Consensus 6 vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n 85 (360)
T 1ry6_A 6 VRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCV 85 (360)
T ss_dssp EEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCE
T ss_pred EECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCce
Confidence 3999999999776677889998999998887651 11111112357999999999999999999999999999995 999
Q ss_pred ceeeecccccCCCcEEEec-------------------------------------------------------------
Q psy16994 138 ALLFSFGTTNSGKTFTIQD------------------------------------------------------------- 156 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~G------------------------------------------------------------- 156 (932)
+||||||||||||||||.|
T Consensus 86 ~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~e 165 (360)
T 1ry6_A 86 CSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE 165 (360)
T ss_dssp EEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--------
T ss_pred eEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCccceeeE
Confidence 9999999999999999987
Q ss_pred ----------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCc
Q psy16994 157 ----------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAE 226 (932)
Q Consensus 157 ----------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse 226 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+... ....|+|+||||||||
T Consensus 166 ~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~----~~~~skL~lVDLAGSE 241 (360)
T 1ry6_A 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK----NTSLGKIAFIDLAGSE 241 (360)
T ss_dssp ---CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT----TEEEEEEEEEECCCTT
T ss_pred cCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC----CcceeEEEEEECCCCc
Confidence 78899999999999999999999999999999999999999999987542 3567999999999999
Q ss_pred cccccccch-hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcC
Q psy16994 227 RQKRAHTSG-DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA 305 (932)
Q Consensus 227 ~~~~~~~~~-~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~ 305 (932)
|..++++.| .+++|+.+||+||++||+||.+|..+ ..|||||+||||+||+|+|||++ +|+||+||+|+..
T Consensus 242 r~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-------~~hvPyRdSkLT~lLqdsLgGns-kt~mIa~isP~~~ 313 (360)
T 1ry6_A 242 RGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-------KNHIPFRDSELTKVLRDIFVGKS-KSIMIANISPTIS 313 (360)
T ss_dssp GGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS-------TTSCCGGGCHHHHHTGGGGSSSC-EEEEEEEECCBGG
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHhcC-------CCCCccccCHHHHHHHHHhCCCC-eEEEEEEeCCCcc
Confidence 999998876 57899999999999999999999764 38999999999999999999999 9999999999999
Q ss_pred cHHHHHHHHHHHHHhcccccccCCC
Q psy16994 306 YAEETVQVLKISSVARDLLTVAKPR 330 (932)
Q Consensus 306 ~~~et~~~l~~~~~~~~i~~~~~~~ 330 (932)
+++||++||+||++|+.|++.|..+
T Consensus 314 ~~~ETlsTLrfA~rak~i~n~~~~~ 338 (360)
T 1ry6_A 314 CCEQTLNTLRYSSRVKNKGNSKLEG 338 (360)
T ss_dssp GHHHHHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHHHHhhcccCcccC
Confidence 9999999999999999999977654
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.9e-62 Score=515.25 Aligned_cols=252 Identities=29% Similarity=0.479 Sum_probs=213.7
Q ss_pred cccccccccccccCCCcccccC-CCCceEEEe--CCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGS-TFENVLEVL--DQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN 127 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~ 127 (932)
++.|++ ||||+.+.|... ....++.+. ++..+.+.+. .....|.||+||++.++|.+||+. +.|
T Consensus 5 ~i~V~v----RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~ 71 (330)
T 2h58_A 5 NIRVIA----RVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK--------GKPVSFELDKVFSPQASQQDVFQE-VQA 71 (330)
T ss_dssp CEEEEE----EECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET--------TEEEEEECSEEECTTCCHHHHHTT-THH
T ss_pred CEEEEE----EcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC--------CCeeEEecCeEeCCCCCcHhHHHH-HHH
Confidence 345554 999999988432 223344442 2333333221 234589999999999999999998 589
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------- 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------- 156 (932)
+|+++++|||+||||||||||||||||+|
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 151 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ 151 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc
Confidence 99999999999999999999999999998
Q ss_pred -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994 157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF 217 (932)
Q Consensus 157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l 217 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|
T Consensus 152 ~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL 230 (330)
T 2h58_A 152 EKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-TGLRTTGKL 230 (330)
T ss_dssp CCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-TTEEEEEEE
T ss_pred ccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-CCcEEEEEE
Confidence 788999999999999999999999999999999999999999999987654 245678999
Q ss_pred EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994 218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297 (932)
Q Consensus 218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i 297 (932)
+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++ .|||||+||||+||+|+|||++ +|+||
T Consensus 231 ~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-------~hvPyRdSkLT~lL~dsLgGns-~t~mI 302 (330)
T 2h58_A 231 NLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-------GHVPFRNSKLTYLLQDSLSGDS-KTLMV 302 (330)
T ss_dssp EEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHTHHHHSTTC-EEEEE
T ss_pred EEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-------CCCcccccHHHHHHHHHhCCCc-eEEEE
Confidence 999999999999999999999999999999999999999998754 8999999999999999999999 99999
Q ss_pred EecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994 298 VNVNASPAYAEETVQVLKISSVARDLL 324 (932)
Q Consensus 298 ~~~~p~~~~~~et~~~l~~~~~~~~i~ 324 (932)
+||+|+..+++||++||+||.+|+.|.
T Consensus 303 ~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 303 VQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred EEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999985
No 16
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.1e-62 Score=529.20 Aligned_cols=262 Identities=24% Similarity=0.332 Sum_probs=207.8
Q ss_pred hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994 49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN 127 (932)
Q Consensus 49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~ 127 (932)
..++.|++ |+||++..|...+..+++.+.++.++.+++|.. ...........|.||+||++.++|.+||+.++.|
T Consensus 70 ~~~I~V~v----RvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~p 145 (410)
T 1v8k_A 70 EHRICVCV----RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARP 145 (410)
T ss_dssp CCCEEEEE----EECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHH
T ss_pred CCCeEEEE----EeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHH
Confidence 34455555 999999999776677888888888888876641 1111111234799999999999999999999999
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------- 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------- 156 (932)
+|+++++|||+||||||||||||||||.|
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~D 225 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFD 225 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEE
Confidence 99999999999999999999999999987
Q ss_pred ----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeE
Q psy16994 157 ----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214 (932)
Q Consensus 157 ----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~ 214 (932)
|+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.. ...
T Consensus 226 LL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~------~~~ 299 (410)
T 1v8k_A 226 LLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG------RLH 299 (410)
T ss_dssp TTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS------SEE
T ss_pred CCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC------cce
Confidence 7889999999999999999999999999999999999999999998642 367
Q ss_pred EEEEEEeCCCCccccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhh-cCCCCC
Q psy16994 215 SSFDICDLAGAERQKRAH-TSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRS-LSGLSS 292 (932)
Q Consensus 215 s~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~-l~g~~~ 292 (932)
|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|..+ ..|||||+||||+||+|+ |||++
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-------~~hIPYRdSKLTrLLqdsllGgns- 371 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLTQVLRDSFIGENS- 371 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------------CCCCHHHHHTTHHHHSSSE-
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-------CCCCCcccchhHHHHhhcccCCCc-
Confidence 999999999999988776 46778889999999999999999999864 389999999999999999 59998
Q ss_pred eeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccC
Q psy16994 293 TVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328 (932)
Q Consensus 293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~ 328 (932)
+|+||+||+|+..+++||++||+||++|+.|..+|.
T Consensus 372 kT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 372 RTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred eEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999976553
No 17
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1e-61 Score=520.24 Aligned_cols=261 Identities=28% Similarity=0.428 Sum_probs=205.5
Q ss_pred cccccccccccccCCCcccccCCCCceEEEeC----CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVLD----QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVH 126 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~ 126 (932)
++.|++ ||||+.+.|.......++...+ ..++.+..+.. ....+.|.||+||++.++|.+||+. +.
T Consensus 6 nIrV~v----RvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~ 75 (349)
T 3t0q_A 6 NIRVYC----RVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG-----RILSYNFQFDMIFEPSHTNKEIFEE-IR 75 (349)
T ss_dssp EEEEEE----EECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC-------CEEEEEEESEEECTTCCHHHHHHH-HH
T ss_pred CcEEEE----EeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC-----cccceeeecCEEECCCccHHHHHHH-HH
Confidence 455665 9999999885544333333222 22444443321 1223579999999999999999998 67
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------- 156 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------- 156 (932)
|+|+++++|||+||||||||||||||||+|
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 155 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKS 155 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC----
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccc
Confidence 999999999999999999999999999987
Q ss_pred ----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC
Q psy16994 157 ----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208 (932)
Q Consensus 157 ----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~ 208 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+...
T Consensus 156 ~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 235 (349)
T 3t0q_A 156 HDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT 235 (349)
T ss_dssp -----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT
T ss_pred ccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC
Confidence 5678899999999999999999999999999999999999999999886543
Q ss_pred CcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcC
Q psy16994 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLS 288 (932)
Q Consensus 209 ~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~ 288 (932)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++. ...|||||+||||+||+|+||
T Consensus 236 -~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~lLqdsLg 310 (349)
T 3t0q_A 236 -GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA----GKRYIPFRNSKLTYLLQYSLV 310 (349)
T ss_dssp -CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG----GGSCCCGGGSHHHHHHGGGSS
T ss_pred -CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC----CCCcCCCcCCHHHHHHHHhcC
Confidence 345789999999999999999999999999999999999999999999987642 236999999999999999999
Q ss_pred CCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhccccccc
Q psy16994 289 GLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVA 327 (932)
Q Consensus 289 g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~ 327 (932)
|++ +|+||+||+|...+++||++||+||++++.|+..+
T Consensus 311 Gns-kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 311 GDS-KTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp TTC-EEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred CCc-eEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999 99999999999999999999999999999998765
No 18
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=9.9e-62 Score=520.41 Aligned_cols=260 Identities=27% Similarity=0.457 Sum_probs=205.4
Q ss_pred ccccCCCcccccCCCCceEEEeCCCeEEEcCCCCc--cccCCCCCcceecceec--------CCCCChHHHHHHHHHHHH
Q psy16994 60 QILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDM--KCSITDTCNLYRFSNIY--------GPHTTQAELFQNIVHNML 129 (932)
Q Consensus 60 ~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~f~fd~v~--------~~~~~q~~v~~~~~~~~v 129 (932)
+||||++..|...+...++.+ ++..+.+.+|... ........+.|.||+|| ++.++|.+||+.++.|+|
T Consensus 7 vRvRPl~~~E~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv 85 (354)
T 3gbj_A 7 VRIRPMNRRETDLHTKCVVDV-DANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENIL 85 (354)
T ss_dssp EEECCCCHHHHHHTCCBCEEE-ETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHH
T ss_pred EECCCCChhhhccCCceEEEe-CCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhHHHH
Confidence 399999999966555444444 4556677766521 11112335589999999 456889999999999999
Q ss_pred HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------- 156 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------- 156 (932)
+++++|||+||||||||||||||||+|
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 165 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSR 165 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCC
Confidence 999999999999999999999999988
Q ss_pred -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeC---CCCCcceeEEE
Q psy16994 157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD---PGSEELIMMSS 216 (932)
Q Consensus 157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~---~~~~~~~~~s~ 216 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.. ..+......|+
T Consensus 166 ~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~sk 245 (354)
T 3gbj_A 166 QTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGK 245 (354)
T ss_dssp -CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred cceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEE
Confidence 7889999999999999999999999999999999999999999998762 22234457899
Q ss_pred EEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEE
Q psy16994 217 FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKM 296 (932)
Q Consensus 217 l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~ 296 (932)
|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.+ .++..|||||+||||+||+|+|||++ +|+|
T Consensus 246 L~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~-~~~~~hvPyRdSkLT~lLqdsLgGns-kt~m 323 (354)
T 3gbj_A 246 LSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAG-KNKNKFVPYRDSVLTWLLKDSLGGNS-KTAM 323 (354)
T ss_dssp EEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC-------CCCCCGGGSHHHHHTHHHHSTTC-EEEE
T ss_pred EEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcc-cCCCCcccccccHHHHHHHHHhCCCC-eEEE
Confidence 999999999999999999999999999999999999999999985421 12458999999999999999999999 9999
Q ss_pred EEecCCCcCcHHHHHHHHHHHHHhcc
Q psy16994 297 IVNVNASPAYAEETVQVLKISSVARD 322 (932)
Q Consensus 297 i~~~~p~~~~~~et~~~l~~~~~~~~ 322 (932)
|+||+|...+|+||++||+||.+|+.
T Consensus 324 Ia~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 324 VATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999985
No 19
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.1e-62 Score=524.01 Aligned_cols=253 Identities=30% Similarity=0.460 Sum_probs=205.8
Q ss_pred hhcccccccccccccCCCcccccCCCCceEEEeCC-CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994 49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQ-KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN 127 (932)
Q Consensus 49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~ 127 (932)
..++.|++ ||||+.+.|...+...|+.+.++ ..+.+. ....|.||+||+++++|.+||+.++.|
T Consensus 10 ~~~i~V~v----RvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-----------~~~~f~FD~Vf~~~~~Q~~vy~~~~~p 74 (344)
T 4a14_A 10 EAPVRVAL----RVRPLLPKELLHGHQSCLQVEPGLGRVTLG-----------RDRHFGFHVVLAEDAGQEAVYQACVQP 74 (344)
T ss_dssp CCCCEEEE----EECCCCHHHHHTTCCBCEEEEGGGTEEEET-----------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred ccceEEEE----EecccchHHHhccCeeEEEEcCCCceEEec-----------ccceEEEEEEEecCcchhHHHHHHHHH
Confidence 44556655 99999999976667788877543 444442 234799999999999999999999999
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------- 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------- 156 (932)
+|+++++|||+||||||||||||||||.|
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 154 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL 154 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHH
Confidence 99999999999999999999999999976
Q ss_pred -----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC------
Q psy16994 157 -----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG------ 207 (932)
Q Consensus 157 -----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~------ 207 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....
T Consensus 155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 234 (344)
T 4a14_A 155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234 (344)
T ss_dssp SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence 788999999999999999999999999999999999999999999987432
Q ss_pred -CCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhh
Q psy16994 208 -SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRS 286 (932)
Q Consensus 208 -~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~ 286 (932)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+++ +..|||||+||||+||+|+
T Consensus 235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~----~~~hvPyRdSkLT~lLqds 310 (344)
T 4a14_A 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR----RGSHIPYRDSKITRILKDS 310 (344)
T ss_dssp ----CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTT----TTSCCCGGGCHHHHHTTTS
T ss_pred ccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccc----cCCCCCcchhhHHHHhHhh
Confidence 12345789999999999999999999999999999999999999999999998652 3479999999999999999
Q ss_pred cCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994 287 LSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321 (932)
Q Consensus 287 l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~ 321 (932)
|||++ +|+||+||+|...+|+||++||+||+|||
T Consensus 311 LgGns-kt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 311 LGGNA-KTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSTTS-EEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cCCCc-ceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999 99999999999999999999999999996
No 20
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.8e-62 Score=525.16 Aligned_cols=260 Identities=24% Similarity=0.336 Sum_probs=206.1
Q ss_pred hhcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCC-ccccCCCCCcceecceecCCCCChHHHHHHHHHH
Q psy16994 49 EDRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKD-MKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHN 127 (932)
Q Consensus 49 ~~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~ 127 (932)
..++.|++ |+||++..|...+...++.+++..++.+.+|.. ...........|.||+||++.++|.+||+.++.|
T Consensus 50 ~~~I~V~v----RvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~p 125 (387)
T 2heh_A 50 EHRICVCV----RKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARP 125 (387)
T ss_dssp CCSEEEEE----EECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHH
T ss_pred CCCeEEEE----ECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHH
Confidence 34555555 999999999766677788888888888876641 1111111234799999999999999999999999
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec---------------------------------------------------
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD--------------------------------------------------- 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G--------------------------------------------------- 156 (932)
+|+++++|||+||||||||||||||||.|
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~D 205 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFD 205 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEE
Confidence 99999999999999999999999999987
Q ss_pred ----------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeE
Q psy16994 157 ----------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMM 214 (932)
Q Consensus 157 ----------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~ 214 (932)
|+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+. ....
T Consensus 206 LL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~~ 279 (387)
T 2heh_A 206 LLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK------GRMH 279 (387)
T ss_dssp TTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS------SSEE
T ss_pred CCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC------Ceee
Confidence 788999999999999999999999999999999999999999999864 2367
Q ss_pred EEEEEEeCCCCccccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhc-CCCCC
Q psy16994 215 SSFDICDLAGAERQKRAH-TSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL-SGLSS 292 (932)
Q Consensus 215 s~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l-~g~~~ 292 (932)
|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|..+ ..|||||+||||+||+|+| ||++
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-------~~hvPYRdSKLTrlLqdsllGgns- 351 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFRESKLTQVLRDSFIGENS- 351 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-------CSCCCGGGSHHHHHTGGGGSSTTE-
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-------CCCCCccccHHHHHHhhhccCCCC-
Confidence 999999999999998776 46788899999999999999999999974 3899999999999999995 8888
Q ss_pred eeEEEEecCCCcCcHHHHHHHHHHHHHhcccccc
Q psy16994 293 TVKMIVNVNASPAYAEETVQVLKISSVARDLLTV 326 (932)
Q Consensus 293 ~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~ 326 (932)
+|+||+||+|+..+++||++||+||++|++|++.
T Consensus 352 kT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 352 RTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred eEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999999999864
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-62 Score=525.17 Aligned_cols=257 Identities=28% Similarity=0.456 Sum_probs=203.5
Q ss_pred hcccccccccccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCcc---ccCCCCCcceecceecCCCCChHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMK---CSITDTCNLYRFSNIYGPHTTQAELFQNIV 125 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~---~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~ 125 (932)
.++.|++ ||||+...+. .++.+ .+..+|.+.+|.... .......+.|.||+||+ +++|.+||+.++
T Consensus 24 ~~i~V~v----RvRP~~~~e~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~ 93 (359)
T 3nwn_A 24 KKVHAFV----RVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 93 (359)
T ss_dssp CCEEEEE----EECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCEEEEE----EcCCCCcccc-----cceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHH
Confidence 4556666 9999876552 23443 456677777765221 11223345799999997 589999999999
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEEEec-------------------------------------------------
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------- 156 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------- 156 (932)
.|+|+++++|||+||||||||||||||||+|
T Consensus 94 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 94 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccc
Confidence 9999999999999999999999999999998
Q ss_pred -------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCc
Q psy16994 157 -------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEE 210 (932)
Q Consensus 157 -------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~ 210 (932)
++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.... ...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~ 253 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 253 (359)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred cccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCc
Confidence 778899999999999999999999999999999999999999999887432 234
Q ss_pred ceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCC
Q psy16994 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGL 290 (932)
Q Consensus 211 ~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~ 290 (932)
....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ ..|||||+||||+||+|+|||+
T Consensus 254 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~------~~hVPYRdSkLT~lLqdsLgGn 327 (359)
T 3nwn_A 254 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK------RDHIPFRQCKLTHALKDSLGGN 327 (359)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----------CCGGGSHHHHHTHHHHSSS
T ss_pred ccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcC------CCcCCcccCHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999999999999999998753 4799999999999999999999
Q ss_pred CCeeEEEEecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994 291 SSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 291 ~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i 323 (932)
+ +|+||+||+|...+|+||++||+||++||.|
T Consensus 328 s-kt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 328 C-NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp S-EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred c-cEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 9 9999999999999999999999999999986
No 22
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2e-61 Score=516.51 Aligned_cols=260 Identities=29% Similarity=0.445 Sum_probs=209.1
Q ss_pred cccccccccccccCCCc-ccccCCCCceEEEeC------CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQ-SYAGSTFENVLEVLD------QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQN 123 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~-~e~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~ 123 (932)
++.|++ ||||+.+ .|.. ...++.+.. ..++.+..+. .......|.||+||++.++|.+||+.
T Consensus 4 nIrV~v----RvRP~~~~~e~~--~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~f~FD~Vf~~~~~Q~~Vy~~ 72 (347)
T 1f9v_A 4 NIRVYC----RIRPALKNLENS--DTSLINVNEFDDNSGVQSMEVTKIQ-----NTAQVHEFKFDKIFDQQDTNVDVFKE 72 (347)
T ss_dssp EEEEEE----EECCCCTTTCCC--TTEEEEECCCBTTTTBEEEEEEEGG-----GTTCEEEEEESEEECTTCCHHHHHHH
T ss_pred CeEEEE----EeCCCCcccccC--CCceEEEecccCCCCceEEEEecCC-----CCcCceEEeeCEEECCCCCHHHHHHH
Confidence 345555 9999987 3321 223333321 1244444332 11234589999999999999999998
Q ss_pred HHHHHHHHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------
Q psy16994 124 IVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------- 156 (932)
Q Consensus 124 ~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------- 156 (932)
+.|+|+++++|||+||||||||||||||||+|
T Consensus 73 -v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 151 (347)
T 1f9v_A 73 -VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS 151 (347)
T ss_dssp -HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-
T ss_pred -HHHHHHHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCC
Confidence 57999999999999999999999999999987
Q ss_pred -----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC
Q psy16994 157 -----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG 207 (932)
Q Consensus 157 -----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~ 207 (932)
++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 231 (347)
T 1f9v_A 152 DNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK 231 (347)
T ss_dssp ------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-
T ss_pred ccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC
Confidence 566789999999999999999999999999999999999999999987654
Q ss_pred CCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhc
Q psy16994 208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSL 287 (932)
Q Consensus 208 ~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l 287 (932)
. .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++. +..|||||+||||+||+|+|
T Consensus 232 ~-~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~lLqdsL 306 (347)
T 1f9v_A 232 T-GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----TKRHIPFRNSKLTYLLQYSL 306 (347)
T ss_dssp --CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CCCCGGGSHHHHHHHHHH
T ss_pred C-CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccC----CCCcCccccCHHHHHHHHHh
Confidence 2 345789999999999999999999999999999999999999999999987642 24899999999999999999
Q ss_pred CCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccC
Q psy16994 288 SGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328 (932)
Q Consensus 288 ~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~ 328 (932)
||++ +|+||+||+|+..+++||++||+||++++.|+..+.
T Consensus 307 gGns-kt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 307 TGDS-KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp STTC-EEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred CCCc-cEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999 999999999999999999999999999999988763
No 23
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-61 Score=517.38 Aligned_cols=259 Identities=27% Similarity=0.426 Sum_probs=194.0
Q ss_pred hcccccccccccccCCCcccccCCCCceEEE--------eCCCeEEEcCCCCccc-----cCCCCCcceecceecCCCCC
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEV--------LDQKSIMFKPMKDMKC-----SITDTCNLYRFSNIYGPHTT 116 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~--------~~~~~v~~~~~~~~~~-----~~~~~~~~f~fd~v~~~~~~ 116 (932)
+++.|++ ||||+++.|...... ++.+ .++.++.+.+|..... ........|.||+||++.++
T Consensus 22 ~~irV~v----RvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~ 96 (376)
T 2rep_A 22 GNIRVFC----RVRPVLPGEPTPPPG-LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSG 96 (376)
T ss_dssp -CEEEEE----EECCCCTTSCCCCGG-GSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCC
T ss_pred CCeEEEE----EcCCCChhhcccCCc-eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCccc
Confidence 3455555 999999998544322 1211 3456677765431100 01123357999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec----------------------------------------
Q psy16994 117 QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD---------------------------------------- 156 (932)
Q Consensus 117 q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G---------------------------------------- 156 (932)
|.+||+. +.|+|+++++|||+||||||||||||||||.|
T Consensus 97 Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~ 175 (376)
T 2rep_A 97 QDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYV 175 (376)
T ss_dssp HHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEE
T ss_pred chhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEE
Confidence 9999998 56999999999999999999999999999987
Q ss_pred ---------------------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEE
Q psy16994 157 ---------------------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVF 197 (932)
Q Consensus 157 ---------------------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~ 197 (932)
++++.|.|++|++.+|..|..+|++++|.+|..|||||+||
T Consensus 176 EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 255 (376)
T 2rep_A 176 EIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVF 255 (376)
T ss_dssp EEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEE
T ss_pred EEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEE
Confidence 66788999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccch----hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Q psy16994 198 SIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273 (932)
Q Consensus 198 ~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~----~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp 273 (932)
+|+|.+.+.. ......|+|+|||||||||+.++++.| .|++|+.+||+||++||+||.+|+.++ .|||
T Consensus 256 ti~v~~~~~~-~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-------~hVP 327 (376)
T 2rep_A 256 QLQISGEHSS-RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-------SHVP 327 (376)
T ss_dssp EEEEEEEESS-SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-------SCCC
T ss_pred EEEEEEEecC-CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-------CccC
Confidence 9999987554 234568999999999999999999999 999999999999999999999999753 8999
Q ss_pred CCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 274 ~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i 323 (932)
||+||||+||+|+|||++ +|+||+||+|...+|+||++||+||+|++++
T Consensus 328 YRdSkLT~LLqdsLgGns-kT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 328 YRNSKLTYLLQNSLGGSA-KMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GGGSHHHHHTGGGTSTTC-EEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHhhCCCC-eEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999 9999999999999999999999999999864
No 24
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-61 Score=522.54 Aligned_cols=261 Identities=30% Similarity=0.475 Sum_probs=213.0
Q ss_pred cccccccccccccCCCcccccCCCCceEEEe--CC----CeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEVL--DQ----KSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNI 124 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~--~~----~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~ 124 (932)
++.|++ ||||+.+.+.... ..++.+. ++ .++.+..+. .....+.|.||+||++.++|.+||+.
T Consensus 60 nIrV~v----RvRP~~~~~e~~~-~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~F~FD~VF~~~~~Q~~Vf~~- 128 (403)
T 4etp_A 60 NIRVYL----RIRPALKNLENSD-TSLINVNEFDDNSGVQSMEVTKIQ-----NTAQVHEFKFDKIFDQQDTNVDVFKE- 128 (403)
T ss_dssp SEEEEE----EECCCCTTTSCSC-CTTEEECCCBTTTTBEEEEEEECS-----SSCEEEEEEESEEECTTCCHHHHHHH-
T ss_pred CeEEEE----EeCCCCCcccccC-CCeeEEeeccCCCCceEEEEecCC-----CCcCceEEEcCEEECCCCchHHHHHH-
Confidence 345555 9999987732211 2233332 11 133333222 11234579999999999999999998
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEEec------------------------------------------------
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------------------------------ 156 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------------------------------ 156 (932)
+.|+|+++++|||+||||||||||||||||+|
T Consensus 129 v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 208 (403)
T 4etp_A 129 VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSD 208 (403)
T ss_dssp HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-
T ss_pred HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCc
Confidence 66999999999999999999999999999987
Q ss_pred ----------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCC
Q psy16994 157 ----------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208 (932)
Q Consensus 157 ----------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~ 208 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+...
T Consensus 209 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 288 (403)
T 4etp_A 209 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 288 (403)
T ss_dssp -------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT
T ss_pred cccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC
Confidence 6778999999999999999999999999999999999999999999886543
Q ss_pred CcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcC
Q psy16994 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLS 288 (932)
Q Consensus 209 ~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~ 288 (932)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++. ...|||||+||||+||+|+||
T Consensus 289 -~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~~~hiPyRdSkLT~LLqdsLg 363 (403)
T 4etp_A 289 -GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS----TKRHIPFRNSKLTYLLQYSLT 363 (403)
T ss_dssp -CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCT----TTSCCCGGGSHHHHHTGGGTS
T ss_pred -CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC----CCCcCCcccchHHHHHHHhcC
Confidence 345679999999999999999999999999999999999999999999987642 236999999999999999999
Q ss_pred CCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccccccC
Q psy16994 289 GLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328 (932)
Q Consensus 289 g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~~~~~ 328 (932)
|++ +|+||+||+|...+++||++||+||++++.|...|.
T Consensus 364 Gns-kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 364 GDS-KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp TTC-EEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred CCc-eEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999 999999999999999999999999999999988763
No 25
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=4.2e-61 Score=511.62 Aligned_cols=246 Identities=24% Similarity=0.389 Sum_probs=192.3
Q ss_pred hcccccccccccccCCCcccccCCCCceEEEeC---CCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLD---QKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVH 126 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~ 126 (932)
.++.|++ ||||+.+.+.. ....++.+++ +.++.+ ....|.||+||++.++|.+||+.++.
T Consensus 22 ~~VrV~v----RvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~------------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~ 84 (344)
T 3dc4_A 22 SAVRIAV----REAPYRQFLGR-REPSVVQFPPWSDGKSLIV------------DQNEFHFDHAFPATISQDEMYQALIL 84 (344)
T ss_dssp SEEEEEE----EECCCC--------CCSEECCSSSCSSEEEE------------TTEEEECSEEECTTCCHHHHHHHHTH
T ss_pred CCeEEEE----ECCCCCccccc-CCceEEEecCCCCCceEEe------------cCcEEEcceEECCCCCHHHHHHhhcc
Confidence 4455554 99999877632 2334554432 333333 23479999999999999999999999
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------- 156 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------- 156 (932)
|+|+++++|||+||||||||||||||||.|
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i 164 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKP 164 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCE
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCee
Confidence 999999999999999999999999999964
Q ss_pred -------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEE
Q psy16994 157 -------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSF 217 (932)
Q Consensus 157 -------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l 217 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+. ...|+|
T Consensus 165 ~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------~~~skl 237 (344)
T 3dc4_A 165 FDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------THHSRM 237 (344)
T ss_dssp EETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-------SCEEEE
T ss_pred EEccCCCCCCccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-------CcEEEE
Confidence 577899999999999999999999999999999999999999999652 256999
Q ss_pred EEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEE
Q psy16994 218 DICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297 (932)
Q Consensus 218 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i 297 (932)
+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ .|||||+||||+||+|+|||++ +|+||
T Consensus 238 ~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-------~hiPyRdSkLT~lLqdsLgGns-kt~mI 309 (344)
T 3dc4_A 238 NIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-------TVIPYRDSVLTTVLQASLTAQS-YLTFL 309 (344)
T ss_dssp EEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-------SSCCGGGSHHHHHTTTTSSTTC-EEEEE
T ss_pred EEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-------CcCCccccHHHHHHHHHhCCCC-EEEEE
Confidence 999999999999999999999999999999999999999999754 8999999999999999999999 99999
Q ss_pred EecCCCcCcHHHHHHHHHHHHHhccccccc
Q psy16994 298 VNVNASPAYAEETVQVLKISSVARDLLTVA 327 (932)
Q Consensus 298 ~~~~p~~~~~~et~~~l~~~~~~~~i~~~~ 327 (932)
+||+|...+++||++||+||++|+.....|
T Consensus 310 a~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 310 ACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999987554
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3e-60 Score=516.79 Aligned_cols=260 Identities=25% Similarity=0.400 Sum_probs=209.1
Q ss_pred hcccccccccccccCCCcccccCCCCceEEEeCCCeEEEcCCCCccccCCCCCcceecceecCCCCChHHHHHHHHHHHH
Q psy16994 50 DRVQAFDVKKQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNML 129 (932)
Q Consensus 50 ~~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~~~v 129 (932)
+++.|++ ||||+.+.+.... ..++...++.+|.+.++.... ........|.||+||++.++|.+||+. +.|+|
T Consensus 59 gnIrV~v----RvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv 131 (412)
T 3u06_A 59 DNIRVFC----RIRPPLESEENRM-CCTWTYHDESTVELQSIDAQA-KSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLI 131 (412)
T ss_dssp CSEEEEE----EECCCCGGGTTSC-BCEEEEEETTEEEEECCC--------CCCEEECSEEECTTCCHHHHHTT-THHHH
T ss_pred CCEEEEE----EcCCCCchhccCc-ceEEEecCCCEEEEecCCccc-ccccCceEEeeCeEcCCCCCHHHHHHH-HHHHH
Confidence 3445555 9999998884432 223445677888877654211 111224589999999999999999985 67999
Q ss_pred HHhcCCCCceeeecccccCCCcEEEec-----------------------------------------------------
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTIQD----------------------------------------------------- 156 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~~G----------------------------------------------------- 156 (932)
+++++|||+||||||||||||||||+|
T Consensus 132 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 211 (412)
T 3u06_A 132 QSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD 211 (412)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCC
T ss_pred HHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCC
Confidence 999999999999999999999999988
Q ss_pred -----------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 157 -----------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 157 -----------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|+|
T Consensus 212 ~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~~kL~l 290 (412)
T 3u06_A 212 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-KQEISVGSINL 290 (412)
T ss_dssp CCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT-TTEEEEEEEEE
T ss_pred ceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC-CCCEEEEEEEE
Confidence 788999999999999999999999999999999999999999999987654 24567899999
Q ss_pred EeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEe
Q psy16994 220 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN 299 (932)
Q Consensus 220 vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~ 299 (932)
||||||||.. .|.|++|+.+||+||++||+||.+|+.++ .|||||+||||+||+|+|||++ +|+||+|
T Consensus 291 VDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~-------~hiPyRdSkLT~LLqdsLgGns-kt~mI~~ 358 (412)
T 3u06_A 291 VDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQ-------DHIPYRNSKLTHLLMPSLGGNS-KTLMFIN 358 (412)
T ss_dssp EECCCCCC--------------CTTTHHHHHHHHHHHHHHTTC-------SCCCGGGSHHHHHHGGGTSTTC-EEEEEEE
T ss_pred EECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccC-------CCCCccccHHHHHHHHhcCCCc-eEEEEEE
Confidence 9999999874 46899999999999999999999999754 8999999999999999999999 9999999
Q ss_pred cCCCcCcHHHHHHHHHHHHHhcccccccCC
Q psy16994 300 VNASPAYAEETVQVLKISSVARDLLTVAKP 329 (932)
Q Consensus 300 ~~p~~~~~~et~~~l~~~~~~~~i~~~~~~ 329 (932)
|+|...+|+||++||+||++++.|...+..
T Consensus 359 vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~ 388 (412)
T 3u06_A 359 VSPFQDCFQESVKSLRFAASVNSCKMTKAK 388 (412)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHHHCC----
T ss_pred eCCChhhHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999977654
No 27
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.5e-60 Score=510.32 Aligned_cols=256 Identities=28% Similarity=0.459 Sum_probs=201.6
Q ss_pred cccccccccccccCCCcccccCCCCceEEE-eCCCeEEEcCCCCcc---ccCCCCCcceecceecCCCCChHHHHHHHHH
Q psy16994 51 RVQAFDVKKQILNSFDQSYAGSTFENVLEV-LDQKSIMFKPMKDMK---CSITDTCNLYRFSNIYGPHTTQAELFQNIVH 126 (932)
Q Consensus 51 ~~~~~~~~~~rvRp~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~---~~~~~~~~~f~fd~v~~~~~~q~~v~~~~~~ 126 (932)
++.|++ ||||+.... ..++.+ .++.++.+..|.... .........|.||+||+ +++|.+||+.++.
T Consensus 24 ~IrV~v----RvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~ 93 (358)
T 2nr8_A 24 KVHAFV----RVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 93 (358)
T ss_dssp CEEEEE----EECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CeEEEE----EcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHH
Confidence 345555 999976532 234554 466778777765211 11222344799999995 8999999999999
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec--------------------------------------------------
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD-------------------------------------------------- 156 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------------------------------------------------- 156 (932)
|+|+++++|||+||||||||||||||||+|
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 173 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLST 173 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCC
Confidence 999999999999999999999999999987
Q ss_pred ------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCC-CCcc
Q psy16994 157 ------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG-SEEL 211 (932)
Q Consensus 157 ------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~-~~~~ 211 (932)
++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.... ....
T Consensus 174 ~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 253 (358)
T 2nr8_A 174 LPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEK 253 (358)
T ss_dssp STTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------C
T ss_pred ccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCC
Confidence 667899999999999999999999999999999999999999999987432 2344
Q ss_pred eeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCC
Q psy16994 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLS 291 (932)
Q Consensus 212 ~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~ 291 (932)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+. ..|||||+||||+||+|+|||++
T Consensus 254 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~------~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 254 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK------RDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp CEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----------CCGGGSHHHHHTHHHHSSSS
T ss_pred EEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC------CCcCCCccCHHHHHHHHhcCCCC
Confidence 568999999999999999999999999999999999999999999998753 47999999999999999999999
Q ss_pred CeeEEEEecCCCcCcHHHHHHHHHHHHHhccc
Q psy16994 292 STVKMIVNVNASPAYAEETVQVLKISSVARDL 323 (932)
Q Consensus 292 ~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i 323 (932)
+|+||+||+|...+|+||++||+||+|||.|
T Consensus 328 -kt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 328 -NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp -EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred -eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=3e-55 Score=524.05 Aligned_cols=215 Identities=29% Similarity=0.492 Sum_probs=182.5
Q ss_pred CCcceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec------------------------
Q psy16994 101 TCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD------------------------ 156 (932)
Q Consensus 101 ~~~~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G------------------------ 156 (932)
..+.|.||+||++.++|.+||+. +.|+|+++++|+|+||||||||||||||||.|
T Consensus 428 ~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~ 506 (715)
T 4h1g_A 428 SNLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKG 506 (715)
T ss_dssp EEEEEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGT
T ss_pred CCeEEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCC
Confidence 34589999999999999999987 56999999999999999999999999999988
Q ss_pred ----------------------------------------------ceEEEecCHHHHHHHHHhhhhccccccccCccCC
Q psy16994 157 ----------------------------------------------LTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRS 190 (932)
Q Consensus 157 ----------------------------------------------l~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~s 190 (932)
|+++.|.|+++++.+|..|..+|++++|.+|.+|
T Consensus 507 ~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~s 586 (715)
T 4h1g_A 507 WSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHS 586 (715)
T ss_dssp EEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CG
T ss_pred ceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCcc
Confidence 7889999999999999999999999999999999
Q ss_pred CCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q psy16994 191 SRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270 (932)
Q Consensus 191 srsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~l~~~i~~l~~~~~~~~~~~~ 270 (932)
||||+||+|+|.+.+... .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ..
T Consensus 587 sRSH~i~~i~~~~~~~~~-~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~------~~ 659 (715)
T 4h1g_A 587 SRSHSIFIIDLQGYNSLT-KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKD------GS 659 (715)
T ss_dssp GGSEEEEEEEEEEEETTT-CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCS------CC
T ss_pred ccccEEEEEEEEEEecCC-CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC------CC
Confidence 999999999999886543 44678999999999999999999999999999999999999999999998653 47
Q ss_pred CccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324 (932)
Q Consensus 271 ~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~ 324 (932)
|||||+||||+||+++|||++ +|+||+||+|+..+++||++||+||+||++|+
T Consensus 660 ~vpyR~SkLT~lL~~slggn~-~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 660 HVPYRNSKLTYLLKHSLGGNS-KTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CCCGGGCHHHHHTGGGTSTTC-EEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred cCCCccCHHHHHHHhhcCCCc-eEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999 99999999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.92 E-value=3.7e-26 Score=192.68 Aligned_cols=82 Identities=29% Similarity=0.432 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhc
Q psy16994 242 RTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321 (932)
Q Consensus 242 ~~in~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~ 321 (932)
.+||+||++||+||.+|..+. ..|||||+||||+||+|+|||++ +|+||+||+|...+++||++||+||++|+
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~------~~hvPyRdSkLT~lL~dsLgGns-kt~mi~~vsp~~~~~~ETl~TL~fA~rak 74 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGT------KTHVPYRDSKMTRILQDSLDGNC-RTTIVICCSPSVFNEAETKSTLMFGQRAK 74 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTC------CSSCCGGGCHHHHHTHHHHHSSE-EEEEEEEECCBGGGHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcC------CCCCCCccchHHHHHHHHhcCCC-ceeEEEEeCcccchHHHHHHHHHHHHHHH
Confidence 469999999999999999863 48999999999999999999999 99999999999999999999999999999
Q ss_pred ccccccCCC
Q psy16994 322 DLLTVAKPR 330 (932)
Q Consensus 322 ~i~~~~~~~ 330 (932)
.|.+.|+.|
T Consensus 75 ~i~~~~~~n 83 (100)
T 2kin_B 75 TIKNTVSVN 83 (100)
T ss_dssp TCEEEECCE
T ss_pred hccCcceec
Confidence 999999876
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.88 E-value=1.7e-23 Score=183.93 Aligned_cols=79 Identities=29% Similarity=0.418 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCchHHhhhhhcCCCCCeeEEEEecCCCcCcHHHHHHHHHHHHHhcccc
Q psy16994 245 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLL 324 (932)
Q Consensus 245 n~sl~~l~~~i~~l~~~~~~~~~~~~~vp~r~s~LT~ll~~~l~g~~~~~~~i~~~~p~~~~~~et~~~l~~~~~~~~i~ 324 (932)
|+||++||+||.+|+.++ ..|||||+||||+||+|+|||++ +|+||+||+|+..+++||++||+||++|+.|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~------~~hvPyRdSkLT~lL~dsLggn~-~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~ 73 (117)
T 3kin_B 1 NKSLSALGNVISALAEGT------KTHVPYRDSKMTRILQDSLGGNC-RTTIVICCSPSVFNEAETKSTLMFGQRAKTIK 73 (117)
T ss_dssp CCHHHHHHHHHHHHHHSC------CSSCCGGGSHHHHHTHHHHHSSS-EEEEEEEECCSGGGHHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHhCC------CCCCCCcchHHHHHHHHHcCCCc-cceeeeeeCCCcccHHHHHHHHHHHHHhCccc
Confidence 789999999999999863 47999999999999999999999 99999999999999999999999999999999
Q ss_pred cccCCC
Q psy16994 325 TVAKPR 330 (932)
Q Consensus 325 ~~~~~~ 330 (932)
+.|.+|
T Consensus 74 n~~~~n 79 (117)
T 3kin_B 74 NTVSVN 79 (117)
T ss_dssp EEECCC
T ss_pred CCceec
Confidence 999876
No 31
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.44 E-value=8e-09 Score=109.29 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 542 (932)
++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444333333333333333333
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.27 E-value=5.9e-12 Score=158.23 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.2
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
++.|.||+..|.+|||||.+
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHH
T ss_pred cCCCcEEEEecCCCCCccHH
Confidence 68999999999999999953
No 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.26 E-value=1.1e-11 Score=155.79 Aligned_cols=12 Identities=0% Similarity=0.025 Sum_probs=7.2
Q ss_pred eeEEEEecCCCc
Q psy16994 293 TVKMIVNVNASP 304 (932)
Q Consensus 293 ~~~~i~~~~p~~ 304 (932)
...+|-||-|+.
T Consensus 677 ~phfvRCIkPN~ 688 (1184)
T 1i84_S 677 NPNFVRCIIPNH 688 (1184)
T ss_dssp EEEECCEECCCS
T ss_pred CCCceeeeCCCC
Confidence 556666666654
No 34
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.5e-11 Score=121.96 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=46.5
Q ss_pred cceecceecCCCCChH--HHHHHHHHHHHHHhcC-CCCceeeecccccCCCc
Q psy16994 103 NLYRFSNIYGPHTTQA--ELFQNIVHNMLERYLN-GEDALLFSFGTTNSGKT 151 (932)
Q Consensus 103 ~~f~fd~v~~~~~~q~--~v~~~~~~~~v~~~~~-g~~~~i~~~G~tgsGKt 151 (932)
+.|.||+||+|..+|. +||++ +.++|+.+++ |||+|||||||||||||
T Consensus 57 k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT 107 (298)
T 2o0a_A 57 HVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL 107 (298)
T ss_dssp CEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH
T ss_pred ceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc
Confidence 5899999999999999 99999 8999999999 99999999999999998
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.84 E-value=0.0047 Score=63.08 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 488 NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQ 537 (932)
Q Consensus 488 ~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~ 537 (932)
.+..++..++..+..+...+..+...+..+...+..++..+......+..
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333333333333333333333
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.48 E-value=0.037 Score=50.53 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKEL 517 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l 517 (932)
++..|+.++.++...+..-.+....++....++
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl 39 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEM 39 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444555555555555444444333333333333
No 37
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.38 E-value=0.053 Score=73.15 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=13.4
Q ss_pred ceeeecccccCCCcEEE
Q psy16994 138 ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~ 154 (932)
-.|+.+|++|+|||.++
T Consensus 1305 ~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp CCCEEESSTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45667899999999654
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.35 E-value=0.069 Score=72.10 Aligned_cols=31 Identities=6% Similarity=-0.094 Sum_probs=16.8
Q ss_pred HHHHHHhcccccccCCCCCCCCCCcccchhh
Q psy16994 314 LKISSVARDLLTVAKPRHLPPPPRKKTRFSI 344 (932)
Q Consensus 314 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 344 (932)
|....|+.+|...|..+..-.+...+++-|+
T Consensus 1632 leHv~RI~RIL~qp~GhaLLVGvgGSGkqSL 1662 (3245)
T 3vkg_A 1632 LDHILRIDRVFRQPQGHALLIGVSGGGKSVL 1662 (3245)
T ss_dssp HHHHHHHHHHHTSTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHHccCCCCeEEecCCCCcHHHH
Confidence 3445566666666665555555555554443
No 39
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.69 E-value=0.26 Score=43.90 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy16994 569 KEEFKEQT 576 (932)
Q Consensus 569 ~~~l~~l~ 576 (932)
...+..+.
T Consensus 82 e~~l~el~ 89 (129)
T 2fxo_A 82 EAKVKEMN 89 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.27 E-value=0.14 Score=62.96 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.2
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
++.|.||+..|.+|||||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 68999999999999999953
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.09 E-value=0.28 Score=57.05 Aligned_cols=9 Identities=22% Similarity=0.264 Sum_probs=4.1
Q ss_pred EEEEeCCCC
Q psy16994 217 FDICDLAGA 225 (932)
Q Consensus 217 l~~vDLags 225 (932)
|..+||.+.
T Consensus 234 L~~L~L~~n 242 (597)
T 3oja_B 234 LTILKLQHN 242 (597)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 444444443
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.66 E-value=1.2 Score=38.86 Aligned_cols=15 Identities=0% Similarity=0.147 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy16994 745 QSYLNTIKNMENDER 759 (932)
Q Consensus 745 ~~l~~~l~~l~~el~ 759 (932)
..++.+++.+..++.
T Consensus 86 ~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 86 LDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.19 E-value=15 Score=45.32 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=11.5
Q ss_pred EEEEEEEeCCCCcccc
Q psy16994 214 MSSFDICDLAGAERQK 229 (932)
Q Consensus 214 ~s~l~~vDLagse~~~ 229 (932)
...|-++|..|-|...
T Consensus 430 ~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 430 HSFIGVLDIYGFETFE 445 (1080)
T ss_dssp CEEEEEEEECCCCCCS
T ss_pred CceEEeeccCCccccC
Confidence 4567778888888655
No 44
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.44 E-value=2.9 Score=34.74 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 728 TKCEELTQQVTKLEADCQSYLNTIKNMENDER 759 (932)
Q Consensus 728 ~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~ 759 (932)
...+....++..+..++..+..++.....++.
T Consensus 60 ~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 60 REYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444443333
No 45
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.02 E-value=3.8 Score=34.85 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEH 507 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l 507 (932)
.+.+++..+..++.++.+.+.++
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL 34 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEEL 34 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 46
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.38 E-value=0.031 Score=53.67 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=35.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.++||.+.+....+..++.. +..++.++--.....++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 36788766655567777765 5666666544445567889999999999653
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.89 E-value=5.9 Score=34.44 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy16994 754 MENDERSTKHNQE 766 (932)
Q Consensus 754 l~~el~~l~~~l~ 766 (932)
++.++..+..++.
T Consensus 88 LE~~iesL~eEl~ 100 (119)
T 3ol1_A 88 LERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.98 E-value=0.1 Score=51.11 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCC-CceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGE-DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~-~~~i~~~G~tgsGKt~t~ 154 (932)
.++|+.++.....+..++.. +..++.....+. +..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 35677766555456666664 455555544332 267888999999999954
No 49
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.43 E-value=0.11 Score=54.58 Aligned_cols=51 Identities=22% Similarity=0.451 Sum_probs=34.2
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
++|+.+.....++..++. .+..++.....+....|+-||++|+||||.+.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 567765544334555665 355667665555456788899999999996543
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.34 E-value=13 Score=41.55 Aligned_cols=10 Identities=20% Similarity=0.076 Sum_probs=4.8
Q ss_pred EEEEEeCCCC
Q psy16994 216 SFDICDLAGA 225 (932)
Q Consensus 216 ~l~~vDLags 225 (932)
.|..+||.+.
T Consensus 145 ~L~~L~Ls~N 154 (487)
T 3oja_A 145 RVQYLDLKLN 154 (487)
T ss_dssp SEEEEECTTS
T ss_pred CCCEEECCCC
Confidence 4445555443
No 51
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=86.54 E-value=5 Score=30.89 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q psy16994 803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871 (932)
Q Consensus 803 ~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~ 871 (932)
..+...|..+..+|..-...+.-...||-.++.++.....-|..++...+......+.++.+++.++.+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555665555556666667777777777777777777777777777666666676666543
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.31 E-value=19 Score=40.22 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.8
Q ss_pred EEEEEEeCCCCc
Q psy16994 215 SSFDICDLAGAE 226 (932)
Q Consensus 215 s~l~~vDLagse 226 (932)
..|..+||.+..
T Consensus 191 ~~L~~L~Ls~N~ 202 (487)
T 3oja_A 191 AKLKTLDLSSNK 202 (487)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECCCCC
Confidence 345666666553
No 53
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.08 E-value=0.39 Score=49.99 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcC--CC--CceeeecccccCCCcEEE
Q psy16994 118 AELFQNIVHNMLERYLN--GE--DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 118 ~~v~~~~~~~~v~~~~~--g~--~~~i~~~G~tgsGKt~t~ 154 (932)
..+.+.++..++..++. |. ...|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44555666666666553 22 246778999999999854
No 54
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.99 E-value=16 Score=29.95 Aligned_cols=10 Identities=10% Similarity=-0.247 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy16994 744 CQSYLNTIKN 753 (932)
Q Consensus 744 l~~l~~~l~~ 753 (932)
...+..+++.
T Consensus 72 k~~l~~e~dn 81 (93)
T 3s4r_A 72 KARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 55
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=82.74 E-value=6.6 Score=30.94 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Q psy16994 811 DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINI 874 (932)
Q Consensus 811 ~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~ 874 (932)
..+..+..+...+...+..++..+......-..++.++..+.+.+.---..|.+|...|++|..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 3333444444444444445555555544455555555555555555444455566666666544
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.14 E-value=0.83 Score=46.69 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=31.7
Q ss_pred ceecceecCCCCChHHHHHHHHHHHH-----HHhcCCCCceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNML-----ERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v-----~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.+.|+.+++.......+... +..+- ..+-......|+-||++|+|||+++
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 47788999887766666543 22211 1111233455889999999999854
No 57
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.81 E-value=6.8 Score=44.62 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=16.9
Q ss_pred ceecceecCCCCCh----HHHH-HHHHHHHHHHhcCCCCce
Q psy16994 104 LYRFSNIYGPHTTQ----AELF-QNIVHNMLERYLNGEDAL 139 (932)
Q Consensus 104 ~f~fd~v~~~~~~q----~~v~-~~~~~~~v~~~~~g~~~~ 139 (932)
.|.|-.-|.+.... .++. .-....+..+++.|.-.|
T Consensus 77 ~L~FRvkfy~~~~~~~l~d~~t~~LlYlQvk~dIl~G~l~c 117 (575)
T 2i1j_A 77 QFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYC 117 (575)
T ss_dssp EEEEEESSCCSSHHHHCCSHHHHHHHHHHHHHHHHTTSSCC
T ss_pred EEEEEEEEcCCChhhhcCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 45565555544321 1222 222345566667666543
No 58
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.45 E-value=20 Score=30.91 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q psy16994 807 KQLEDQVNSLKAEL 820 (932)
Q Consensus 807 ~~l~~e~~~l~~el 820 (932)
......|.+|+..+
T Consensus 102 qa~Eerf~KLKe~y 115 (120)
T 3i00_A 102 QANEQRYSKLKEKY 115 (120)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.05 E-value=0.36 Score=50.60 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=18.3
Q ss_pred cCCCCceeeecccccCCCcEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t 153 (932)
..|...+|+-||++|+|||.+
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQL 61 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHH
Confidence 367888999999999999984
No 60
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.21 E-value=2.2 Score=48.68 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=11.7
Q ss_pred cCCCCChHHHHHHHHHHH
Q psy16994 111 YGPHTTQAELFQNIVHNM 128 (932)
Q Consensus 111 ~~~~~~q~~v~~~~~~~~ 128 (932)
+++.++-.+||+.++..+
T Consensus 20 vd~~tt~~ell~~V~~~L 37 (575)
T 2i1j_A 20 IQQTTTGKQLFDQVVKTI 37 (575)
T ss_dssp EETTCBHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHc
Confidence 345677778887766544
No 61
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.20 E-value=0.66 Score=48.50 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=31.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHH-----HhcCCCCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLE-----RYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~-----~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
++|+.|.+....-..+...+..|+.. .+--.....|+-||++|+|||+++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 66788877655444555554444321 111234567889999999999854
No 62
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.84 E-value=0.64 Score=47.50 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=21.6
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
|+|+.+.+.+.....+... +..+. ..+..|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 7888887754433333322 22222 23467888999999999853
No 63
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=77.61 E-value=16 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16994 805 YRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK 850 (932)
Q Consensus 805 ~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~ 850 (932)
....+.+++...+.........+++...+...+...+..++.+|++
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544444555555555544
No 64
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=77.45 E-value=0.5 Score=43.46 Aligned_cols=18 Identities=17% Similarity=0.612 Sum_probs=14.4
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...++-+|++|+|||+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CSEEEEESSSTTTTCHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446777999999999953
No 65
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.15 E-value=40 Score=30.10 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 730 CEELTQQVTKLEADCQSYLNTIKNMEND 757 (932)
Q Consensus 730 ~~~l~~~l~~l~~~l~~l~~~l~~l~~e 757 (932)
+..+..++..++.++..++.++..++.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444333333
No 66
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=75.94 E-value=1 Score=42.81 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+..++..+..+....++-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 334444455566677899999999999844
No 67
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.60 E-value=0.74 Score=47.58 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=30.0
Q ss_pred ceecceecCCCCChHHHHHHHHHHHH-----HHhcCCCCceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNML-----ERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v-----~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.++|+.+.+.+..-..+...+..++. ..+--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 47788888765444444433322221 1111134556888999999999843
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.09 E-value=0.76 Score=50.29 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=34.4
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhcC--C--CCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYLN--G--EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~--g--~~~~i~~~G~tgsGKt~t 153 (932)
..+|+.|-+-+.--.++.+.++.|+.. ..+. | ....|+-|||+|+|||++
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHH
Confidence 467888888766666666666766653 2221 3 345788899999999974
No 69
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.55 E-value=1.1 Score=42.45 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+..++..+..+....|+-||++|+|||+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 34445555556677889999999999983
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.46 E-value=0.77 Score=49.76 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHHHhc-CCCCceeeecccccCCCcEEE
Q psy16994 115 TTQAELFQNIVHNMLERYL-NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 115 ~~q~~v~~~~~~~~v~~~~-~g~~~~i~~~G~tgsGKt~t~ 154 (932)
......+.. +...+..++ .+...+++-||++|+|||+++
T Consensus 22 ~gr~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRR-LAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHH-HHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 334555554 333444443 355668899999999999843
No 71
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.23 E-value=59 Score=35.85 Aligned_cols=15 Identities=13% Similarity=-0.146 Sum_probs=10.7
Q ss_pred EecCHHHHHHHHHhh
Q psy16994 161 NVHSCEEAYRVLRFG 175 (932)
Q Consensus 161 ~v~s~~~~~~~l~~g 175 (932)
...|++|+..+...-
T Consensus 139 ~P~Twdel~~~a~~l 153 (471)
T 3mq9_A 139 PPKTWEEIPALDKEL 153 (471)
T ss_dssp CCSBGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 457888888876653
No 72
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=74.10 E-value=1.4 Score=46.40 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=29.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.|+||.++.. .++...+.. +..++... .+....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~-~~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENL-GSLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTT-TTSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCc-CCCCCeEEEECCCCCcHHHHHH
Confidence 4788886632 233444443 33444331 1134578889999999998653
No 73
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.58 E-value=1 Score=48.08 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=26.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.|+|+.+++.. .+... +....+.+..+.|+-||++|+|||+.
T Consensus 20 ~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 20 VFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHH
T ss_pred CCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHH
Confidence 47888887753 23322 22223333444589999999999984
No 74
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.43 E-value=17 Score=28.42 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy16994 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLE 866 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le 866 (932)
.+.+.+.....+++.+...-.+|..-...++..+..|+.+-..++....-+..+..+|+
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666665555554444444443
No 75
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.39 E-value=0.99 Score=47.65 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=31.1
Q ss_pred eecceecCCCCChHHHHHHHHHHHHH-HhcCC---CCceeeecccccCCCcEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLE-RYLNG---EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~g---~~~~i~~~G~tgsGKt~t 153 (932)
.+|+.|.+...--..+...+..|+-. .++.| ....|+-||++|+|||++
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 56778877655444555555555443 23333 235688899999999984
No 76
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.26 E-value=19 Score=27.68 Aligned_cols=43 Identities=30% Similarity=0.511 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16994 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQME 849 (932)
Q Consensus 807 ~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~ 849 (932)
..|+..+.....++......+.+++..+.+++..|..|..++.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.22 E-value=3.8 Score=48.56 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=37.3
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhcCCC----CceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYLNGE----DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~g~----~~~i~~~G~tgsGKt~t 153 (932)
..+|+.|-+-+.--.++.+.+..|+.. .++.++ ...|+.||++|+|||+.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHH
Confidence 467888888887777887777777764 334433 35789999999999974
No 78
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.03 E-value=0.94 Score=47.13 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=29.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-Hhc---CCCCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYL---NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~---~g~~~~i~~~G~tgsGKt~t 153 (932)
...|+.+.+.+..-..+...+..|+.. .++ ......|+-||++|+|||++
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 356778777544444444443333331 111 22356789999999999984
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=71.72 E-value=1.3 Score=44.93 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=27.8
Q ss_pred ceecceecCCCCChHHHHHHHHHH-----HHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHN-----MLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~-----~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.++|+.|.+.......+.+- +.. .+..+--.....++-||++|+|||+++.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 47788887754333333221 111 1222111122338899999999998643
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.19 E-value=75 Score=34.99 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=7.8
Q ss_pred HhhhhhcCCCCCeeEEEEe
Q psy16994 281 QIFQRSLSGLSSTVKMIVN 299 (932)
Q Consensus 281 ~ll~~~l~g~~~~~~~i~~ 299 (932)
.....+..| ++.|+++
T Consensus 226 ~~~~~f~~G---k~am~~~ 241 (471)
T 3mq9_A 226 IAEAAFNKG---ETAMTIN 241 (471)
T ss_dssp HHHHHHHTT---CEEEEEE
T ss_pred HHHHHHHcC---CeEEEEe
Confidence 334444445 4456554
No 81
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.24 E-value=1.4 Score=45.17 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=17.1
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
......|+-||++|+|||++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHH
T ss_pred CCCCeEEEEECCCCCcHHHH
Confidence 56677899999999999984
No 82
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=69.52 E-value=1.2 Score=44.30 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=27.0
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
++|+.+++. ..+..++.. +..++ ..+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-l~~~~---~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-LKSAA---SGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-HHHHH---HTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-HHHHH---hCCCCCeEEEECCCCCCHHHHHH
Confidence 566666652 233444433 22222 23356788899999999998543
No 83
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.47 E-value=1 Score=48.37 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=29.2
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHh----cCCCCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERY----LNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~----~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..|+.|++....-..+...+..|+...- +.+....|+-||++|+|||+++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 5677777654333334333333332211 2345667899999999999843
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=69.08 E-value=1.4 Score=48.78 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=28.3
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
.|+||.+... .++...+.. +..+... .|....++-||++|+|||+.+.
T Consensus 101 ~~tfd~fv~g-~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVVG-PGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCCC-TTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCCC-CchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 5888875532 233334433 3333332 2324578889999999999653
No 85
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.31 E-value=1.4 Score=46.80 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=24.2
Q ss_pred cceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 107 FSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 107 fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
|+.+|+ |..+... +-..+-.|.-..++-||++|+|||+++.
T Consensus 24 ~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 24 LDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp GGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 455664 3444433 3333334543337889999999998543
No 86
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.97 E-value=1 Score=45.68 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.6
Q ss_pred CCceeeecccccCCCcEEE
Q psy16994 136 EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~ 154 (932)
....|+-||++|+|||+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456899999999999854
No 87
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.78 E-value=1.6 Score=46.75 Aligned_cols=50 Identities=12% Similarity=0.350 Sum_probs=30.7
Q ss_pred eecceecCCCCChHHHHHHHHHHHHH-HhcCC---CCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLE-RYLNG---EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~g---~~~~i~~~G~tgsGKt~t~ 154 (932)
++|+.|.+...--..+...+..|+-. .++.+ ....|+-||++|+|||++.
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 56788877665544555554444332 22222 2345888999999999854
No 88
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.60 E-value=1.5 Score=48.08 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=33.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-hcC--C--CCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-YLN--G--EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~--g--~~~~i~~~G~tgsGKt~t 153 (932)
..+|+.|-+-+.--.++...+..|+... .+. | ....|+.|||+|+|||++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 4667888776655566666666666532 222 3 346788999999999974
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.53 E-value=2.2 Score=45.88 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=29.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCC--ceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED--ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~--~~i~~~G~tgsGKt~t~ 154 (932)
.+.|+.+++. ..+... +..++..+..|.. ..++-||++|+|||+++
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 3567777764 333322 3445555555655 37889999999999854
No 90
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.28 E-value=1.8 Score=47.22 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=32.4
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-hcC--C--CCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-YLN--G--EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~--g--~~~~i~~~G~tgsGKt~t 153 (932)
..+|+.|.|-+.--.++.+.+..|+... .+. | ....|+.|||+|+|||++
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHH
Confidence 3667888776655555655555555432 221 3 345689999999999974
No 91
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=65.26 E-value=48 Score=25.96 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 419 FEEQQTDWENNVKKLREQHEEDLERQRKFYKT 450 (932)
Q Consensus 419 l~e~~~~~~~~l~~e~~~~ee~~~~~~e~l~~ 450 (932)
|.+....|.....+-..+++.++..+.+.+..
T Consensus 11 l~eiRaQYE~ia~knr~EaE~~y~~k~eel~~ 42 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEEWYKSKFADLSE 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444555555544433
No 92
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=65.07 E-value=2.7 Score=45.47 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHhcCCC-Cc--eeeecccccCCCcEEE
Q psy16994 117 QAELFQNIVHNMLERYLNGE-DA--LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 117 q~~v~~~~~~~~v~~~~~g~-~~--~i~~~G~tgsGKt~t~ 154 (932)
....... +...+..++.|. .. +++-||++|+|||+++
T Consensus 22 r~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 22 REQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred hHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3444444 334445544443 34 7889999999999843
No 93
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=64.89 E-value=2.2 Score=43.11 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCC---CceeeecccccCCCcE
Q psy16994 125 VHNMLERYLNGE---DALLFSFGTTNSGKTF 152 (932)
Q Consensus 125 ~~~~v~~~~~g~---~~~i~~~G~tgsGKt~ 152 (932)
+...+..++.|. ..||+-||++|+|||+
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~ 119 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTN 119 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHH
Confidence 334466667666 3479999999999998
No 94
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.78 E-value=1.7 Score=46.79 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=33.8
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-hcC--C--CCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-YLN--G--EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~--g--~~~~i~~~G~tgsGKt~t 153 (932)
..+|+.|-|-+.--.++.+.+..|+... .+. | ....|+-|||+|+|||++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 3567777776655566666666666542 222 3 345688999999999974
No 95
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=64.55 E-value=1.6 Score=45.98 Aligned_cols=50 Identities=12% Similarity=0.340 Sum_probs=29.8
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHH-hcCC---CCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLER-YLNG---EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~g---~~~~i~~~G~tgsGKt~t~ 154 (932)
++|+.|.+...--..+...+..|+... .+.+ ....|+-||++|+|||++.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 567787775544444444444443322 2222 2346899999999999854
No 96
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.42 E-value=1.3 Score=48.33 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=19.9
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
++..++....+.|+-.|+||||||+++
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 344444556678889999999999854
No 97
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=63.76 E-value=2.3 Score=49.41 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=39.5
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE------ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN------VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~------v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
++.|.||+..|.+|||||.+..= +..+. +.++++.+---...+..--.+.|..|..|||---++.|+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F 168 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEE
T ss_pred cCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEE
Confidence 68999999999999999964211 11110 1112221100111122223577899999999666666665
No 98
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.58 E-value=1.3 Score=44.91 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=27.3
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhcC----CCCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYLN----GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~----g~~~~i~~~G~tgsGKt~t 153 (932)
.+.|+.|.+.+..-..+... +..+.. ..+. .....|+-||++|+|||+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHH
Confidence 46788888765433333322 222111 1111 2344688999999999984
No 99
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=63.02 E-value=2.9 Score=46.50 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=29.6
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHHhcCCCC--ceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLERYLNGED--ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~--~~i~~~G~tgsGKt~t~ 154 (932)
.|.|+.|.+. .++... +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG~----~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQ----ENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCH----HHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 3566777654 455443 3445555555543 36788999999999754
No 100
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=62.71 E-value=2.4 Score=43.54 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.2
Q ss_pred eeeecccccCCCcEEEe
Q psy16994 139 LLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~ 155 (932)
.|+-||++|+|||+++.
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 38899999999998643
No 101
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=62.61 E-value=1.6 Score=48.28 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=28.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhcCC---CCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYLNG---EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~g---~~~~i~~~G~tgsGKt~t 153 (932)
.++|+.|.+...--..+...++.|+.. .++.| ....|+-||++|+|||++
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 466777776543333333333333221 12222 335688899999999984
No 102
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=62.60 E-value=1.7 Score=47.21 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=29.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-h---cCCCCceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-Y---LNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~---~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.+.|+.|.+...--..+...+..++... + +......|+-||++|+|||++.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4678888875443333333333333211 1 1123467899999999999843
No 103
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.76 E-value=2.4 Score=45.92 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=30.4
Q ss_pred eecceecCCCCChHHHHHHHHHHHHH-Hhc----CCCCceeeecccccCCCcEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLE-RYL----NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~----~g~~~~i~~~G~tgsGKt~t 153 (932)
.+|+.|-+-+.--.++.+.+..|+.. ..+ -.....|+.||++|+|||++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHH
Confidence 45666666544445555555555532 122 22346799999999999974
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.76 E-value=1.4 Score=47.15 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=18.2
Q ss_pred HHhcCCCCceeeecccccCCCcEEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..++....+.|+-.|+||||||+++
T Consensus 116 ~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 116 KRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHhCCCCEEEEECCCCCCHHHHH
Confidence 3334445568888999999999854
No 105
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=61.21 E-value=3 Score=40.19 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=15.7
Q ss_pred CceeeecccccCCCcEEEec
Q psy16994 137 DALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G 156 (932)
..+++-||+.|+|||++...
T Consensus 58 kn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 34689999999999985433
No 106
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=61.15 E-value=2.5 Score=45.25 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=12.1
Q ss_pred EEEEEeCCCCcccc
Q psy16994 216 SFDICDLAGAERQK 229 (932)
Q Consensus 216 ~l~~vDLagse~~~ 229 (932)
.|+|||++|-.+..
T Consensus 137 ~l~lvDtPG~~~~~ 150 (360)
T 3t34_A 137 NLTLIDLPGLTKVA 150 (360)
T ss_dssp SEEEEECCCBCSSC
T ss_pred CeEEEECCCCCcCC
Confidence 69999999998764
No 107
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.93 E-value=2 Score=46.26 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.2
Q ss_pred CCCceeeecccccCCCcEEE
Q psy16994 135 GEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t~ 154 (932)
+...+++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44568889999999999843
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=60.73 E-value=3.1 Score=40.49 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.0
Q ss_pred CCCCceeeecccccCCCcEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.+....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445899999999999843
No 109
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.06 E-value=4.3 Score=41.80 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCC-CCceeeecccccCCCcE
Q psy16994 120 LFQNIVHNMLERYLNG-EDALLFSFGTTNSGKTF 152 (932)
Q Consensus 120 v~~~~~~~~v~~~~~g-~~~~i~~~G~tgsGKt~ 152 (932)
+|+.++..++.....+ ....|+..|++|||||+
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKST 48 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTS 48 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHH
Confidence 4444444444433222 23568889999999987
No 110
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=59.66 E-value=7 Score=45.88 Aligned_cols=68 Identities=19% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCCceeeecccccCCCcEEE----------ecceE-EEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI----------QDLTY-VNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~----------~Gl~~-~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
++.|.||+..|.+|||||.+. .|... -...+.++-+---...+..--.+.|..|..|||---++.|+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F 247 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEE
T ss_pred hcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEE
Confidence 689999999999999999642 11110 001223332111122222334567999999999666666655
No 111
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=59.36 E-value=1.7 Score=44.09 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=15.1
Q ss_pred CCceeeecccccCCCcEEE
Q psy16994 136 EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~ 154 (932)
....+.-.|++|||||+++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4456777899999999854
No 112
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.97 E-value=3 Score=44.32 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=25.3
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 106 RFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 106 ~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.|+.+++...- +..+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 35666664432 233344444554344888999999999853
No 113
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=58.43 E-value=7.7 Score=45.81 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=39.7
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE----ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN----VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~----v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
++.|.||+..|.+|||||.+..= |..+. -.+.++-+---...+..--.+.|..|..|||---++.|+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F 228 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEE
T ss_pred cCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEE
Confidence 58999999999999999963110 00000 0123322211111222223467999999999666666655
No 114
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=57.98 E-value=2.1e+02 Score=30.99 Aligned_cols=18 Identities=6% Similarity=0.228 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16994 738 TKLEADCQSYLNTIKNME 755 (932)
Q Consensus 738 ~~l~~~l~~l~~~l~~l~ 755 (932)
.+.+.++...+..+....
T Consensus 83 AeY~~kl~aYe~~~~~~~ 100 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIK 100 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 115
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=57.53 E-value=7.5 Score=47.41 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=39.6
Q ss_pred CCCCceeeecccccCCCcEEEec----ceEEE-------ecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQD----LTYVN-------VHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~G----l~~~~-------v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
++.|.||+..|.+|||||.+..= +..+. ..+.++-+---...+..--.+.|..|..|||---++.|+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F 247 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEE
T ss_pred cCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEE
Confidence 68999999999999999964211 00000 1122221111111222233467999999999666666655
No 116
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=57.48 E-value=1.9 Score=44.24 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=23.9
Q ss_pred eecceecCCCCChHHHHHHHHHHHHH-HhcCC----CCceeeecccccCCCcEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLE-RYLNG----EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~g----~~~~i~~~G~tgsGKt~t 153 (932)
++|+.|-+.+.--..+...++.|+-. .++.+ ....++-||++|+|||+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 45666655444334444444444422 12221 122388899999999985
No 117
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.35 E-value=2.7 Score=46.06 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=32.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-hcC--C--CCceeeecccccCCCcEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-YLN--G--EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~--g--~~~~i~~~G~tgsGKt~t 153 (932)
..+|+.|-+-+.--.++.+.+..|+... .+. | .-..|+.||++|+|||++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 3667777776555555555555555432 222 3 346788999999999974
No 118
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=56.95 E-value=8.1 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.4
Q ss_pred CCCCceeeecccccCCCcEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t 153 (932)
++.|.||+..|.+|||||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 68999999999999999973
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.85 E-value=2.5 Score=44.00 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.4
Q ss_pred CCCceeeecccccCCCcEE
Q psy16994 135 GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t 153 (932)
.....|+-||++|+|||++
T Consensus 65 ~~~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCCCEEEEEECTTSSHHHH
T ss_pred CCCceEEEECCCCCCHHHH
Confidence 3445689999999999984
No 120
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.34 E-value=5.1 Score=40.36 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcCCC-CceeeecccccCCCcE
Q psy16994 118 AELFQNIVHNMLERYLNGE-DALLFSFGTTNSGKTF 152 (932)
Q Consensus 118 ~~v~~~~~~~~v~~~~~g~-~~~i~~~G~tgsGKt~ 152 (932)
..+|..++..++.....+. ...|+..|++|||||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKST 47 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTT 47 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHH
Confidence 3455555555555444333 3467888999999987
No 121
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.29 E-value=3.1 Score=46.56 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=29.5
Q ss_pred eecceecCCCCChHHHHHHHHHHHH-----HHhcCCCCceeeecccccCCCcEEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNML-----ERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v-----~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+.|+.+.+....-..++..+..++. ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 5667776655444445444333321 1111244567899999999999843
No 122
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=56.23 E-value=8.2 Score=47.03 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCCCceeeecccccCCCcEEEecceEEEecCHHHHHHHHHh-----------------hhhccccccccCccCCCCCccE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRF-----------------GKSHLSVAPTELNHRSSRSHCV 196 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~-----------------g~~~r~~~~t~~n~~ssrsh~i 196 (932)
.+.|-||+.-|.+|||||.+ ..-++.+|.. .+..--.+.|..|..|||---+
T Consensus 141 ~~~nQsIiiSGESGAGKTes-----------tK~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~ 209 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTEN-----------TKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKF 209 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHH-----------HHHHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEE
T ss_pred hCCCceEEEecCCCCCHHHH-----------HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeE
Confidence 68999999999999999973 2222222221 1111124678999999997667
Q ss_pred EEEEE
Q psy16994 197 FSIKL 201 (932)
Q Consensus 197 ~~i~v 201 (932)
+.|+.
T Consensus 210 iel~F 214 (1052)
T 4anj_A 210 VEIHF 214 (1052)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77766
No 123
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=55.28 E-value=4.7 Score=47.96 Aligned_cols=68 Identities=21% Similarity=0.068 Sum_probs=41.7
Q ss_pred CCCCceeeecccccCCCcEEE----------ecceE--E------EecCHHHHHHHHHhhhhccccccccCccCCCCCcc
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI----------QDLTY--V------NVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHC 195 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~----------~Gl~~--~------~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~ 195 (932)
++.|.||+..|.+|||||.+. .|... . ...+.++-+---...+..--.+.|..|..|||---
T Consensus 166 ~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGK 245 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGK 245 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEE
T ss_pred cCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCcee
Confidence 689999999999999999642 22110 0 12334432222222233334577999999999666
Q ss_pred EEEEEE
Q psy16994 196 VFSIKL 201 (932)
Q Consensus 196 i~~i~v 201 (932)
++.|+.
T Consensus 246 fi~i~F 251 (837)
T 1kk8_A 246 FIRIHF 251 (837)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666665
No 124
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.27 E-value=38 Score=26.70 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16994 809 LEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852 (932)
Q Consensus 809 l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~ 852 (932)
+.+.+.+|..++.+....+.+|+..+......|..|..++..+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555444444444444444443
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=54.12 E-value=2.9 Score=37.93 Aligned_cols=18 Identities=17% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCceeeecccccCCCcE
Q psy16994 135 GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~ 152 (932)
..+..|+-||++|+|||+
T Consensus 22 ~~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp TCCSCEEEESSTTSSHHH
T ss_pred CCCCCEEEECCCCCCHHH
Confidence 455668889999999987
No 126
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=53.77 E-value=5.5 Score=38.34 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=14.8
Q ss_pred HhcCCCCceeeecccccCCCcE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.++.|.| ++..++||||||.
T Consensus 36 ~~~~~~~--~lv~apTGsGKT~ 55 (206)
T 1vec_A 36 IALSGRD--ILARAKNGTGKSG 55 (206)
T ss_dssp HHHTTCC--EEEECCSSSTTHH
T ss_pred HHccCCC--EEEECCCCCchHH
Confidence 3456655 5667899999995
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=53.39 E-value=2.7 Score=38.00 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=15.8
Q ss_pred CCceeeecccccCCCcEEEec
Q psy16994 136 EDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~~G 156 (932)
.+..|+-||++|+|||+....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGG
T ss_pred CCCcEEEECCCCccHHHHHHH
Confidence 345577899999999985433
No 128
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=53.32 E-value=9.8 Score=44.90 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=37.1
Q ss_pred CCCCceeeecccccCCCcEEE----------ecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI----------QDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL 201 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~----------~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v 201 (932)
++.|.||+..|.+|||||.+. .|-. .+.++-+--....+..--.+.|..|..|||---++.|+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~----~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F 210 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHF 210 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC----------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEE
T ss_pred cCCCcEEEEcCCCCCCceehHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEE
Confidence 589999999999999999631 1211 011111100011111223467899999999666666655
No 129
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=53.04 E-value=8.7 Score=45.98 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=35.5
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHHH-hcC----CCCceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLER-YLN----GEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~~-~~~----g~~~~i~~~G~tgsGKt~t~ 154 (932)
.+.|+.|.+....-..+...+..|+... ++. .....|+-||++|+|||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 5788999888777777777665555432 222 23456888999999999743
No 130
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=52.41 E-value=4.7 Score=39.52 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=16.0
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.| ++..++||||||.+
T Consensus 47 ~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 47 PIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHTTCC--EEEECCTTSSHHHH
T ss_pred HHhcCCC--EEEECCCCCcHHHH
Confidence 3456765 67789999999975
No 131
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=52.27 E-value=3.7e+02 Score=32.07 Aligned_cols=14 Identities=0% Similarity=-0.052 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy16994 774 DRLKAVQDELAEMK 787 (932)
Q Consensus 774 ~~~~~~~~el~~l~ 787 (932)
.....+...+.+..
T Consensus 613 ~~a~~~~~Wi~e~e 626 (863)
T 1sjj_A 613 AQANVIGPWIQTKM 626 (863)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.96 E-value=5.2 Score=43.04 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=26.6
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcC-CCCceeeecccccCCCcEE
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLN-GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~-g~~~~i~~~G~tgsGKt~t 153 (932)
|.++.+++ ....... +...+..++. +...+|+-||++|+|||++
T Consensus 17 ~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 17 SVFKEIPF----REDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp HHCSSCTT----CHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHH
T ss_pred cCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHH
Confidence 44444444 3444444 3334444443 4456899999999999984
No 133
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=51.51 E-value=6 Score=41.73 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=26.8
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhc--CCCCceeeecccccCCCcEEE
Q psy16994 106 RFSNIYGPHTTQAELFQNIVHNMLERYL--NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 106 ~fd~v~~~~~~q~~v~~~~~~~~v~~~~--~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+|+.+.+ +..+... +..++..+. .+....|+-||++|+|||+.+
T Consensus 27 ~~~~iiG----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 3555555 3444444 334444433 344567899999999999843
No 134
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=51.13 E-value=2.4e+02 Score=29.69 Aligned_cols=8 Identities=38% Similarity=0.268 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q psy16994 165 CEEAYRVL 172 (932)
Q Consensus 165 ~~~~~~~l 172 (932)
-.+|..+|
T Consensus 19 R~eAE~lL 26 (373)
T 3hhm_B 19 REEVNEKL 26 (373)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 34444444
No 135
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=50.79 E-value=7.2 Score=45.89 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=41.2
Q ss_pred CCCCceeeecccccCCCcEEE----------ecce---EE----EecCHHHHHHHHHhhhhccccccccCccCCCCCccE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI----------QDLT---YV----NVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCV 196 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~----------~Gl~---~~----~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i 196 (932)
++.|.||+..|.+|||||.+. .|.. .. ...+.++-+---...+..--.+.|..|..|||---+
T Consensus 168 ~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~ 247 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKF 247 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEE
T ss_pred hCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCcccee
Confidence 689999999999999999642 2211 00 113344422111122222234779999999997666
Q ss_pred EEEEE
Q psy16994 197 FSIKL 201 (932)
Q Consensus 197 ~~i~v 201 (932)
+.|+.
T Consensus 248 i~i~F 252 (783)
T 4db1_A 248 IRIHF 252 (783)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66665
No 136
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=50.49 E-value=3.5 Score=43.94 Aligned_cols=25 Identities=40% Similarity=0.651 Sum_probs=20.6
Q ss_pred CCCCCCCCCCcccchhHHHhhcCCC
Q psy16994 2 GAEGTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 2 ~~~Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
|..|.+.++||+||++.-||+.|..
T Consensus 104 G~~~~~~~~Giipr~~~~lF~~i~~ 128 (365)
T 2y65_A 104 GVIGDSVKQGIIPRIVNDIFNHIYA 128 (365)
T ss_dssp BSTTCTTTBCHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCChHHHHHHHHHHHHHh
Confidence 5555667789999999999999864
No 137
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=50.40 E-value=5.4 Score=38.42 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=15.3
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.+ ++..++||||||.+
T Consensus 34 ~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 34 LALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHTTCC--EEEECCTTSCHHHH
T ss_pred HHcCCCC--EEEECCCCChHHHH
Confidence 3456665 56678999999974
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=49.62 E-value=10 Score=37.55 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.2
Q ss_pred CCceeeecccccCCCcEE
Q psy16994 136 EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t 153 (932)
....|...|.+|+|||.+
T Consensus 28 ~~~~i~lvG~~g~GKStl 45 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSAT 45 (239)
T ss_dssp CEEEEEEECCTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345678889999999873
No 139
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=49.58 E-value=9.5 Score=39.78 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=25.7
Q ss_pred ecceecCCCCChHHHHHHHHHHHHHHhc--CCCCceeeecccccCCCcEEE
Q psy16994 106 RFSNIYGPHTTQAELFQNIVHNMLERYL--NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 106 ~fd~v~~~~~~q~~v~~~~~~~~v~~~~--~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+|+.+++. ..+... +..++..+. .+....|+-||++|+|||+.+
T Consensus 10 ~~~~~ig~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 45665554 333333 233333332 234567888999999999753
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=49.43 E-value=6.6 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCCceeeecccccCCCcEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 578888999999999998743
No 141
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=49.18 E-value=12 Score=39.81 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.3
Q ss_pred hcCCCCceeeecccccCCCcEEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+..|++..|...|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 45788888999999999999743
No 142
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=49.04 E-value=4.9 Score=40.70 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=15.4
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.| ++..++||||||.+
T Consensus 87 ~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 87 PLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHTCC--CEECCCTTSCHHHH
T ss_pred HHhCCCc--EEEEccCCCCchHH
Confidence 3445655 67789999999963
No 143
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=48.56 E-value=5.9 Score=39.46 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=16.5
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+ ++..++||||||.+
T Consensus 61 ~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 61 PVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 34456766 67789999999974
No 144
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.54 E-value=2.8 Score=45.08 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=18.2
Q ss_pred HHHhcCCCCceeeecccccCCCcEEE
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+..+.-.....+.-.|++|||||+++
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34433344567788899999999854
No 145
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=48.49 E-value=2.9 Score=44.55 Aligned_cols=25 Identities=28% Similarity=0.692 Sum_probs=20.7
Q ss_pred CCCCCCCCCCcccchhHHHhhcCCC
Q psy16994 2 GAEGTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 2 ~~~Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
|..|.+.++||+||+++-||..|..
T Consensus 121 G~~~~~~~~Giipr~~~~lF~~i~~ 145 (372)
T 3b6u_A 121 GIRGDPEKRGVIPNSFDHIFTHISR 145 (372)
T ss_dssp BCTTSGGGBCHHHHHHHHHHHHHHT
T ss_pred cCCCCcccCCcHHHHHHHHHHHhhh
Confidence 4445567789999999999999975
No 146
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.41 E-value=60 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16994 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEM 840 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~ 840 (932)
.|...+..+..++......+.+++.++.++++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666666666655543
No 147
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=48.35 E-value=6.1 Score=40.93 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHhcCCCCceeeecccccCCCcEE
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+..++.|....++..++||||||.+
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHH
Confidence 3455667455678899999999974
No 148
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.23 E-value=4.1 Score=44.60 Aligned_cols=25 Identities=44% Similarity=0.703 Sum_probs=21.4
Q ss_pred CCCCCCCCcccchhHHHhhcCCCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGPYL 28 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~~~ 28 (932)
.|++.++||+||+++.||+.|....
T Consensus 155 ~G~~~~~GIipr~~~~lF~~i~~~~ 179 (443)
T 2owm_A 155 MGTPDQPGLIPRTCEDLFQRIASAQ 179 (443)
T ss_dssp TCCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred ecCCCCCchHHHHHHHHHHHHHhhh
Confidence 3668999999999999999997643
No 149
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=48.20 E-value=4.2 Score=40.47 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.3
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.| ++..++||||||.+
T Consensus 62 ~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 62 IPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 33456766 66789999999964
No 150
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=47.77 E-value=16 Score=34.42 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 15 ~ki~vvG~~~~GKss 29 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTT 29 (198)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 457778999999987
No 151
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.63 E-value=5 Score=44.71 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
++..+..+....++-||++|+|||+.+.+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 44444445556678899999999985443
No 152
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.17 E-value=1.1e+02 Score=24.64 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16994 485 KIQNLKQELSELEAKYKSLSEEHED 509 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~l~~~l~~ 509 (932)
+++.+...|..++.++..+...+..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6667777777777777777666643
No 153
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=47.15 E-value=3.7 Score=43.76 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.8
Q ss_pred CCCCCCCCcccchhHHHhhcCCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~~ 27 (932)
.|++.++||+||++..||+.|...
T Consensus 98 ~G~~~~~Giipr~~~~lF~~i~~~ 121 (369)
T 3cob_A 98 YGADSNPGLTPRAMSELFRIMKKD 121 (369)
T ss_dssp TBCSSSBCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCchhHHHHHHHHHHHHhh
Confidence 366889999999999999999754
No 154
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=46.32 E-value=3.9 Score=42.94 Aligned_cols=24 Identities=46% Similarity=0.757 Sum_probs=20.6
Q ss_pred CCCCCCCCcccchhHHHhhcCCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~~ 27 (932)
.|++.++||+||++..||+.|...
T Consensus 99 ~G~~~~~Giipr~~~~lF~~i~~~ 122 (330)
T 2h58_A 99 EGTAENPGINQRALQLLFSEVQEK 122 (330)
T ss_dssp TBCSSSBCHHHHHHHHHHHHHHTS
T ss_pred ecCCCCCcHHHHHHHHHHHhhhcc
Confidence 356889999999999999999653
No 155
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=45.83 E-value=7 Score=38.66 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=15.7
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+ ++..++||||||.+
T Consensus 57 ~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 57 GLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHhCCCC--EEEEeCCCCcHHHH
Confidence 33456766 55678999999974
No 156
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=45.03 E-value=4.8 Score=42.64 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=17.8
Q ss_pred CCCCCcccchhHHHhhcCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~ 26 (932)
+.++||+||+++-||+.|..
T Consensus 106 ~~~~Giipr~~~~lF~~i~~ 125 (355)
T 1goj_A 106 PDGRGVIPRIVEQIFTSILS 125 (355)
T ss_dssp TTTBCHHHHHHHHHHHHHHT
T ss_pred cccCCchHHHHHHHHHHHHh
Confidence 56799999999999999865
No 157
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=44.51 E-value=5 Score=45.06 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=15.0
Q ss_pred cCCCCceeeecccccCCCcEEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
-.|.+ ++-.|+||||||+++
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35655 566799999999844
No 158
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.51 E-value=5.2 Score=44.13 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=19.3
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEE
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.+...+-.|.-.+|+-||++|+|||++
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTL 66 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHH
Confidence 333344445556889999999999974
No 159
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=44.36 E-value=4 Score=49.43 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
..++..+..+....++-||++|+|||+.+.+
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 3444444456556678899999999985544
No 160
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=44.33 E-value=3.4e+02 Score=29.45 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy16994 772 YEDRLKAVQDELAEM 786 (932)
Q Consensus 772 ~~~~~~~~~~el~~l 786 (932)
+......+...+.+.
T Consensus 372 F~~~a~~~~~Wl~e~ 386 (476)
T 1hci_A 372 FAAQANAIGPWIQNK 386 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=44.16 E-value=13 Score=37.04 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=13.8
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
...|...|.+|+|||.+
T Consensus 21 ~l~I~lvG~~g~GKSSl 37 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSAT 37 (247)
T ss_dssp EEEEEEESSTTSSHHHH
T ss_pred ceEEEEECCCCCcHHHH
Confidence 45678889999999873
No 162
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=43.83 E-value=9.9 Score=36.33 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 15 ~ki~v~G~~~~GKSs 29 (206)
T 2bov_A 15 HKVIMVGSGGVGKSA 29 (206)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 357778999999987
No 163
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=43.75 E-value=7.5 Score=38.20 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.|+ +..++||||||.+
T Consensus 52 ~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 52 PIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHhCCCCE--EEECCCCChHHHH
Confidence 334567664 6678999999963
No 164
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=43.59 E-value=9.6 Score=34.76 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.9
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|.+|+|||.
T Consensus 6 ~i~v~G~~~~GKss 19 (168)
T 1u8z_A 6 KVIMVGSGGVGKSA 19 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46778999999987
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.52 E-value=7.7 Score=40.31 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=16.5
Q ss_pred cCCCCceeeecccccCCCcEEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
-.|....++-||++|+|||+++
T Consensus 34 ~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 34 ERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTTCCCCEEEESSSSSSHHHHH
T ss_pred hCCCCCeEEEECcCCcCHHHHH
Confidence 3455445889999999999843
No 166
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=43.47 E-value=14 Score=43.19 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=43.5
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-------ceEEEecCHHHHHHHHHh
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------LTYVNVHSCEEAYRVLRF 174 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------l~~~~v~s~~~~~~~l~~ 174 (932)
|.|..+ .|...|..-+.. ++..+-.|... ....|.|||||||+|.. -.-|.+.+...|..+...
T Consensus 2 ~~~~~~-~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~e 72 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAE 72 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHH
Confidence 455543 788888777655 45555556532 34579999999999875 345677777777776644
No 167
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=43.43 E-value=5.8 Score=41.92 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=20.5
Q ss_pred CCCCC-------CCCCCcccchhHHHhhcCCC
Q psy16994 2 GAEGT-------IEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 2 ~~~Gs-------~~~~Gi~pr~ldviFnSi~~ 26 (932)
|-||| ..++||+||+++.||+.|..
T Consensus 92 GqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~ 123 (347)
T 1f9v_A 92 GQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123 (347)
T ss_dssp CCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcEeccCCCCCchHHHHHHHHHHHHh
Confidence 66666 35689999999999999864
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=43.26 E-value=7.2 Score=43.27 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=27.1
Q ss_pred ceecceecCCCCChHHHHHHHHHHH-----HHHhcCCCCceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNM-----LERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~-----v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.++|+.|.+.+..-.++.+. +..+ +..+--.....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46788887754433333322 1111 11111112345889999999999843
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=43.11 E-value=8.9 Score=41.61 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.4
Q ss_pred HHhcCC---CCceeee--cccccCCCcEEE
Q psy16994 130 ERYLNG---EDALLFS--FGTTNSGKTFTI 154 (932)
Q Consensus 130 ~~~~~g---~~~~i~~--~G~tgsGKt~t~ 154 (932)
..+..| ...+++- ||++|+|||+++
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444455 4567888 999999999843
No 170
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=43.07 E-value=7.6 Score=35.56 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=13.0
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
.-|+..|.+|+|||..
T Consensus 6 ~~i~v~G~~~~GKssl 21 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECcCCCCHHHH
Confidence 4577889999999873
No 171
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=43.01 E-value=16 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.2
Q ss_pred CCCceeeecccccCCCcE
Q psy16994 135 GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~ 152 (932)
.....|+..|.+|+|||.
T Consensus 16 ~~~~~i~v~G~~~~GKss 33 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTT 33 (186)
T ss_dssp -CCEEEEEECSTTSSHHH
T ss_pred CCeeEEEEECCCCCCHHH
Confidence 345667888999999987
No 172
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=42.99 E-value=5.2 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.675 Sum_probs=20.8
Q ss_pred CCCCCCCCcccchhHHHhhcCCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~~ 27 (932)
.|++.++||+||++..||+.|...
T Consensus 96 ~G~~~~~Giipr~~~~lF~~i~~~ 119 (349)
T 1t5c_A 96 MGSEDHLGVIPRAIHDIFQKIKKF 119 (349)
T ss_dssp TBCSSSBCHHHHHHHHHHHHGGGC
T ss_pred ecCCCCCchHHHHHHHHHHHHHhC
Confidence 366889999999999999999753
No 173
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=42.79 E-value=5.7 Score=41.94 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.8
Q ss_pred CCCCCcccchhHHHhhcCCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~~ 27 (932)
+.++||+||++..||+.|...
T Consensus 111 ~~~~Giipr~~~~lF~~i~~~ 131 (344)
T 4a14_A 111 EDEQGIVPRAMAEAFKLIDEN 131 (344)
T ss_dssp -CCCCHHHHHHHHHHHHHHHC
T ss_pred hcccCCchHHHHHHHHhcccc
Confidence 478999999999999998653
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.60 E-value=5.7 Score=44.38 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=26.9
Q ss_pred ceecceecCCCCChHHHHHHHHHHHHH-HhcCCC----CceeeecccccCCCcEEE
Q psy16994 104 LYRFSNIYGPHTTQAELFQNIVHNMLE-RYLNGE----DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 104 ~f~fd~v~~~~~~q~~v~~~~~~~~v~-~~~~g~----~~~i~~~G~tgsGKt~t~ 154 (932)
.++|+.|.+.+..-.++.+- +..+-. ..+.+. ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 46788877754333333222 211111 112221 234889999999999853
No 175
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=42.53 E-value=4.7 Score=42.99 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.2
Q ss_pred CCCCCcccchhHHHhhcCCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~~ 27 (932)
..++||+||++.-||+.|...
T Consensus 113 ~~~~Giipr~~~~lF~~i~~~ 133 (366)
T 2zfi_A 113 KDQQGIIPQLCEDLFSRINDT 133 (366)
T ss_dssp GGCBCHHHHHHHHHHHHHHTC
T ss_pred cCCCccHHHHHHHHHHHHhhc
Confidence 357899999999999999764
No 176
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.51 E-value=1.1e+02 Score=28.35 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16994 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQM 848 (932)
Q Consensus 795 L~~~l~~~~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l 848 (932)
+++++......+..|..+...|..+++.....+..|+.++..++......+.++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 445555555556666666666666666555555555555544444444333333
No 177
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=42.41 E-value=4.8 Score=43.08 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.0
Q ss_pred CCCCCCCCcccchhHHHhhcCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
.|++.++||+||++.-||+.|..
T Consensus 117 ~G~~~~~Giipra~~~lF~~i~~ 139 (388)
T 3bfn_A 117 LGSPEQPGVIPRALMDLLQLTRE 139 (388)
T ss_dssp TBCSSSBCHHHHHHHHHHHHHHH
T ss_pred ecCccccchhHHHHHHHHHHHHH
Confidence 35688999999999999998864
No 178
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=42.12 E-value=8.4 Score=38.55 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=14.6
Q ss_pred HhcCCCCceeeecccccCCCcE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.++.|.| ++..++||||||.
T Consensus 56 ~i~~~~~--~l~~a~TGsGKT~ 75 (253)
T 1wrb_A 56 AILEHRD--IMACAQTGSGKTA 75 (253)
T ss_dssp HHHTTCC--EEEECCTTSSHHH
T ss_pred HHhCCCC--EEEECCCCChHHH
Confidence 3456765 5566899999996
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=42.01 E-value=8.3 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCCCceeeecccccCCCcEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.|....++-||++|+|||+++
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 354445888999999999854
No 180
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=41.85 E-value=19 Score=35.99 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.5
Q ss_pred CCceeeecccccCCCcEE
Q psy16994 136 EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t 153 (932)
....|...|.+|+|||.+
T Consensus 21 ~~~~I~lvG~~g~GKStl 38 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAA 38 (260)
T ss_dssp CCEEEEEEECTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345678889999999884
No 181
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.48 E-value=3.5 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.9
Q ss_pred ceeeecccccCCCcEEEe
Q psy16994 138 ALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~ 155 (932)
.++...|++|||||+++.
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999998544
No 182
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=41.47 E-value=5.3 Score=38.85 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=15.6
Q ss_pred HHHHhcCCCCceeeecccccCCCcEE
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+++++-.|.- +.-.|++|||||+.
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTL 38 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHH
Confidence 3444444544 44479999999983
No 183
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=41.45 E-value=9 Score=37.30 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=15.5
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+ ++..++||||||.+
T Consensus 46 ~~~~~~~~--~li~~~TGsGKT~~ 67 (220)
T 1t6n_A 46 PQAILGMD--VLCQAKSGMGKTAV 67 (220)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHhCCCC--EEEECCCCCchhhh
Confidence 33455666 56678999999963
No 184
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=41.30 E-value=5.9 Score=41.45 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.2
Q ss_pred CCCCCCCcccchhHHHhhcCCC
Q psy16994 5 GTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 5 Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
+.|.++||+||++.-||+.|..
T Consensus 100 ~~~~~~Giipr~~~~lF~~i~~ 121 (325)
T 1bg2_A 100 HDPEGMGIIPRIVQDIFNYIYS 121 (325)
T ss_dssp TCTTTBCHHHHHHHHHHHHHHH
T ss_pred CCcccCccHHHHHHHHHHHHHh
Confidence 3456679999999999998854
No 185
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=40.98 E-value=8.6 Score=39.75 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.9
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...|+-||++|+|||+++
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457888999999999854
No 186
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=40.81 E-value=33 Score=34.35 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCceeeecccccCCCcEE
Q psy16994 136 EDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t 153 (932)
....|...|.+|+|||..
T Consensus 35 ~~~~I~lvG~~g~GKSSL 52 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSST 52 (262)
T ss_dssp CEEEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688889999999873
No 187
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=40.78 E-value=24 Score=31.98 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.9
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|.+|+|||.
T Consensus 5 ki~v~G~~~~GKss 18 (167)
T 1c1y_A 5 KLVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46678999999987
No 188
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=40.72 E-value=9.3 Score=38.22 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=15.0
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.+ ++..++||||||.+
T Consensus 76 ~i~~~~~--~lv~a~TGsGKT~~ 96 (249)
T 3ber_A 76 LALQGRD--IIGLAETGSGKTGA 96 (249)
T ss_dssp HHHTTCC--EEEECCTTSCHHHH
T ss_pred HHhCCCC--EEEEcCCCCCchhH
Confidence 3456765 55668999999974
No 189
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=40.43 E-value=4.9 Score=38.98 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=14.2
Q ss_pred cCCCCceeeecccccCCCcEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t 153 (932)
+.|.+ ++..|+||+|||++
T Consensus 46 ~~~~~--~li~~~tGsGKT~~ 64 (216)
T 3b6e_A 46 LEGKN--IIICLPTGSGKTRV 64 (216)
T ss_dssp HTTCC--EEEECSCHHHHHHH
T ss_pred hcCCC--EEEEcCCCCCHHHH
Confidence 34554 56689999999974
No 190
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=40.41 E-value=5.4 Score=42.15 Aligned_cols=23 Identities=35% Similarity=0.794 Sum_probs=20.1
Q ss_pred CCCCCCCCcccchhHHHhhcCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
.|++.++||+||++..||+.|..
T Consensus 108 ~G~~~~~Giipr~~~~lF~~i~~ 130 (350)
T 2vvg_A 108 GGNKEEPGAIPNSFKHLFDAINS 130 (350)
T ss_dssp TBCSSSBCHHHHHHHHHHHHHHT
T ss_pred ecCCccCchHHHHHHHHHHHHHh
Confidence 35688999999999999999864
No 191
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=40.17 E-value=9.5 Score=37.44 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.8
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...++-||++|+|||+++
T Consensus 45 ~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CSEEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 347889999999999843
No 192
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=40.11 E-value=8.2 Score=38.21 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.+..|. .++..|+||||||..
T Consensus 72 ~i~~g~--~~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 72 AISQNS--VVIIRGATGCGKTTQ 92 (235)
T ss_dssp HHHHCS--EEEEECCTTSSHHHH
T ss_pred HHhcCC--EEEEEeCCCCCcHHh
Confidence 334454 456789999999963
No 193
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.07 E-value=8 Score=40.14 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.8
Q ss_pred CCCceeeecccccCCCcEE
Q psy16994 135 GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t 153 (932)
..+..|+-||++|+|||+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 4467788899999999874
No 194
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=39.96 E-value=6.8 Score=41.19 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.5
Q ss_pred ceeeecccccCCCcEEEe
Q psy16994 138 ALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~ 155 (932)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 367789999999998543
No 195
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=39.78 E-value=26 Score=32.60 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.1
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
-|+..|.+|+|||.
T Consensus 6 ki~v~G~~~~GKSs 19 (189)
T 4dsu_A 6 KLVVVGADGVGKSA 19 (189)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46778999999987
No 196
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=39.73 E-value=5.6 Score=42.14 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=19.7
Q ss_pred CCCCCCCCcccchhHHHhhcCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGP 26 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~ 26 (932)
.|++.++||+||+++-||..|..
T Consensus 111 ~G~~~~~Giipr~~~~lF~~i~~ 133 (354)
T 3gbj_A 111 MGTADQPGLIPRLCSGLFERTQK 133 (354)
T ss_dssp TBCSSSBCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCchhhHHHHHHHHHHHh
Confidence 35688999999999999998853
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=39.68 E-value=4.8 Score=39.11 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.3
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
...|.-.|++|||||++
T Consensus 8 g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CcEEEEECcCCCCHHHH
Confidence 34566789999999873
No 198
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=39.62 E-value=9.5 Score=42.49 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHhcCCCCceeeecccccCCCcEE
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+..++.|.+..++..|+||||||.+
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHH
Confidence 3445567667788999999999964
No 199
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=39.49 E-value=18 Score=32.80 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.5
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 4 ~~i~v~G~~~~GKSs 18 (167)
T 1kao_A 4 YKVVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 357778999999987
No 200
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=39.07 E-value=24 Score=32.60 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 11 ~~i~v~G~~~~GKss 25 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTC 25 (180)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 457778999999987
No 201
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=39.06 E-value=10 Score=37.32 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=15.3
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.| ++..++||||||.+
T Consensus 57 ~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 57 LGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHTTCC--EEEECCTTSSHHHH
T ss_pred HHhCCCC--EEEECCCCCcHHHH
Confidence 3456766 45678999999964
No 202
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=38.96 E-value=13 Score=33.60 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.7
Q ss_pred eeecccccCCCcEE
Q psy16994 140 LFSFGTTNSGKTFT 153 (932)
Q Consensus 140 i~~~G~tgsGKt~t 153 (932)
|+..|.+|+|||..
T Consensus 4 i~v~G~~~~GKSsl 17 (161)
T 2dyk_A 4 VVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999873
No 203
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.82 E-value=1e+02 Score=21.92 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16994 819 ELEQRHNVVRDLQLKLLQKGEMINNLKAQME 849 (932)
Q Consensus 819 el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~ 849 (932)
++..+......|...+......|..|+.+++
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 204
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=38.81 E-value=16 Score=33.25 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.9
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
-|+..|.+|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1ek0_A 5 KLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46778999999987
No 205
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.69 E-value=6.9 Score=41.55 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=13.1
Q ss_pred eeecccccCCCcEEE
Q psy16994 140 LFSFGTTNSGKTFTI 154 (932)
Q Consensus 140 i~~~G~tgsGKt~t~ 154 (932)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999854
No 206
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=38.59 E-value=15 Score=38.19 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.2
Q ss_pred CceeeecccccCCCcEEEe
Q psy16994 137 DALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~ 155 (932)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 4567888999999998654
No 207
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=38.38 E-value=20 Score=33.06 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.7
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 16 ~~i~v~G~~~~GKSs 30 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSC 30 (179)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 457778999999987
No 208
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=38.33 E-value=13 Score=40.37 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.2
Q ss_pred HHHhcCCCCceeeecccccCCCcEE
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+..++.|.+ ++..++||||||.+
T Consensus 71 i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 71 ILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHTTCC--EEECCCSCSSSHHH
T ss_pred hHHHhCCCC--EEEECCCCCcccHH
Confidence 344556777 57789999999975
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=38.27 E-value=5.6 Score=46.44 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=14.4
Q ss_pred eeeecccccCCCcEEEec
Q psy16994 139 LLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G 156 (932)
..+-.||+|||||+|+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHH
Confidence 345679999999998754
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=38.18 E-value=6.5 Score=38.99 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=19.8
Q ss_pred HHHHHhcCC---CCceeeecccccCCCcEEE
Q psy16994 127 NMLERYLNG---EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 127 ~~v~~~~~g---~~~~i~~~G~tgsGKt~t~ 154 (932)
+-++.++.| ....+.-+|++|+|||+++
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 445666643 2456778899999999753
No 211
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.15 E-value=6.5 Score=36.47 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.3
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|++|||||+
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57788999999987
No 212
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=38.08 E-value=18 Score=32.62 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.5
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|+..|.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999873
No 213
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=37.99 E-value=29 Score=33.35 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.0
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...|+..|.+|+|||..+
T Consensus 11 ~~ki~vvG~~~~GKSsli 28 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYI 28 (218)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ccEEEEECCCCCCHHHHH
Confidence 446777899999998733
No 214
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=37.91 E-value=24 Score=32.58 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.8
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
...|+..|.+|+|||..
T Consensus 12 ~~ki~v~G~~~~GKSsl 28 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSL 28 (181)
T ss_dssp EEEEEEECCTTSCHHHH
T ss_pred ceEEEEECcCCCCHHHH
Confidence 35678889999999873
No 215
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=37.51 E-value=6 Score=41.69 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.5
Q ss_pred CCCCCcccchhHHHhhcCCCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGPYL 28 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~~~ 28 (932)
+.++||+||++.-||+.|....
T Consensus 122 ~~~~GIipra~~~LF~~i~~~~ 143 (344)
T 3dc4_A 122 PEHLGILPRALGDIFERVTARQ 143 (344)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSS
T ss_pred cccCCcHHHHHHHHHHHHHhhh
Confidence 4678999999999999986543
No 216
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=37.42 E-value=9.3 Score=37.95 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=14.4
Q ss_pred hcCCCCceeeecccccCCCcEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t 153 (932)
++.|.+ ++..++||||||.+
T Consensus 63 ~~~g~~--~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 63 ALSGLD--MVGVAQTGSGKTLS 82 (242)
T ss_dssp HHHTCC--EEEEECTTSCHHHH
T ss_pred HhCCCC--EEEECCCcCHHHHH
Confidence 446765 45568999999974
No 217
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=37.38 E-value=23 Score=32.63 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.8
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
.-|+..|.+|+|||..
T Consensus 10 ~~i~v~G~~~~GKssl 25 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSL 25 (181)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467789999999873
No 218
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=37.19 E-value=4.6 Score=38.34 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.9
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.+.-.|++|||||++
T Consensus 3 ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 355679999999874
No 219
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=36.94 E-value=36 Score=30.74 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.8
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
.-|+..|.+|+|||..
T Consensus 7 ~~i~v~G~~~~GKssl 22 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSL 22 (170)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3567789999999873
No 220
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=36.72 E-value=32 Score=31.60 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.5
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
...|+..|.+|+|||..
T Consensus 8 ~~~i~v~G~~~~GKssl 24 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTL 24 (178)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 44577789999999873
No 221
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=36.70 E-value=23 Score=32.26 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.4
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 4 ~~i~v~G~~~~GKss 18 (172)
T 2erx_A 4 YRVAVFGAGGVGKSS 18 (172)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 346778999999987
No 222
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=36.65 E-value=16 Score=34.10 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 11 ~ki~v~G~~~~GKSs 25 (186)
T 2bme_A 11 FKFLVIGNAGTGKSC 25 (186)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 457778999999987
No 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=36.56 E-value=14 Score=35.73 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHhcC--CCCceeeecccccCCCcE
Q psy16994 126 HNMLERYLN--GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 126 ~~~v~~~~~--g~~~~i~~~G~tgsGKt~ 152 (932)
..+++.+.. +....|.-.|++|||||+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 334444432 334456667999999987
No 224
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=36.46 E-value=26 Score=31.85 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.3
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
-|+..|.+|+|||..
T Consensus 8 ~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 467789999999873
No 225
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=36.33 E-value=1.7e+02 Score=25.04 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16994 758 ERSTKHNQEKLLKIYEDR 775 (932)
Q Consensus 758 l~~l~~~l~~~~~~~~~~ 775 (932)
+..++.....++..|...
T Consensus 85 LAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 85 LAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444444443
No 226
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=36.06 E-value=21 Score=33.34 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.8
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 12 ~ki~v~G~~~~GKSs 26 (195)
T 3bc1_A 12 IKFLALGDSGVGKTS 26 (195)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 467788999999987
No 227
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=36.06 E-value=20 Score=33.29 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.3
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
-|+..|.+|+|||..
T Consensus 7 ~i~~~G~~~~GKssl 21 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCL 21 (186)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999873
No 228
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=35.92 E-value=12 Score=40.45 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.8
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+..++..++||||||.+
T Consensus 57 ~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 57 PLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHhcCCCCeEEEECCCCchHHHH
Confidence 444556556677889999999975
No 229
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=35.88 E-value=17 Score=33.26 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.0
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
..|+..|.+|+|||..
T Consensus 8 ~~i~v~G~~~~GKssl 23 (171)
T 1upt_A 8 MRILILGLDGAGKTTI 23 (171)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4577789999999873
No 230
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=35.80 E-value=9.4 Score=37.88 Aligned_cols=21 Identities=29% Similarity=0.195 Sum_probs=15.1
Q ss_pred hcCCCCceeeecccccCCCcEEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
++.+.+ ++.+|+||+|||++.
T Consensus 105 ~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 105 WLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HTTTSE--EEEEESSSTTHHHHH
T ss_pred HHhCCC--EEEEeCCCCCHHHHH
Confidence 445544 566789999999854
No 231
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=35.65 E-value=30 Score=32.85 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 9 ~ki~v~G~~~~GKSs 23 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSC 23 (206)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357778999999987
No 232
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.42 E-value=7.9 Score=37.98 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHhcC-CC--CceeeecccccCCCcEEE
Q psy16994 128 MLERYLN-GE--DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 128 ~v~~~~~-g~--~~~i~~~G~tgsGKt~t~ 154 (932)
-++.++. |. ...+.-+|++|||||+++
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 3455554 32 345666899999999754
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=35.25 E-value=8 Score=40.11 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.5
Q ss_pred ceeeecccccCCCcEEE
Q psy16994 138 ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~ 154 (932)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999843
No 234
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=35.14 E-value=39 Score=30.91 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 8 ~~i~v~G~~~~GKSs 22 (177)
T 1wms_A 8 FKVILLGDGGVGKSS 22 (177)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357788999999987
No 235
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=35.12 E-value=8.1 Score=36.10 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.7
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
..|+..|.+|||||+.
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688899999999874
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=35.09 E-value=5.4 Score=37.67 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=11.7
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.+.-.|++|||||+
T Consensus 7 ~i~i~GpsGsGKST 20 (180)
T 1kgd_A 7 TLVLLGAHGVGRRH 20 (180)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 56667999999987
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=34.80 E-value=12 Score=39.35 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=14.3
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...|.-.|++|||||+++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346667799999999864
No 238
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=34.75 E-value=11 Score=39.10 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.8
Q ss_pred ceeeecccccCCCcEEE
Q psy16994 138 ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~ 154 (932)
.++.-.|++|||||+++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35667799999999864
No 239
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=34.71 E-value=7.6 Score=41.18 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=20.7
Q ss_pred CCCCCCCCcccchhHHHhhcCCCC
Q psy16994 4 EGTIEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 4 ~Gs~~~~Gi~pr~ldviFnSi~~~ 27 (932)
.|++.++||+||++..||+.|...
T Consensus 124 ~G~~~~~Giipr~~~~lf~~i~~~ 147 (355)
T 3lre_A 124 LGSADEPGVMYLTMLHLYKCMDEI 147 (355)
T ss_dssp TBCSSSBCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCeeehhhhHHHHhhhhh
Confidence 356889999999999999998754
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=34.64 E-value=12 Score=41.38 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.4
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
+|...|++|||||+++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5667799999999864
No 241
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=34.59 E-value=31 Score=34.75 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.3
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
...|+..|.+|+|||.+
T Consensus 39 ~~~I~vvG~~g~GKSSL 55 (270)
T 1h65_A 39 SLTILVMGKGGVGKSST 55 (270)
T ss_dssp EEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56788899999999873
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=34.59 E-value=8.3 Score=40.54 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=13.7
Q ss_pred cCCCCceeeecccccCCCcEE
Q psy16994 133 LNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~t 153 (932)
-.|.+ +.-.|++|||||++
T Consensus 169 ~~g~~--v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKN--VIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCC--EEEEESTTSCHHHH
T ss_pred cCCCE--EEEECCCCCCHHHH
Confidence 34554 45569999999884
No 243
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=34.57 E-value=7.8 Score=37.78 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=14.6
Q ss_pred hcCCCCceeeecccccCCCcEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t 153 (932)
++.|.+ ++..++||||||.+
T Consensus 38 ~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 38 ALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHTCC--EEEECCSSHHHHHH
T ss_pred HhCCCC--EEEECCCCChHHHH
Confidence 345655 45678999999974
No 244
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.56 E-value=12 Score=38.77 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCCCceeeecccccCCCcEEE
Q psy16994 134 NGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 134 ~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.|....++-||++|+|||+++
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444334888999999999843
No 245
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=34.23 E-value=43 Score=31.24 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.7
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 17 ~ki~v~G~~~~GKSs 31 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSC 31 (196)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 357788999999986
No 246
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=34.08 E-value=11 Score=43.33 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+..++..+..|.+.++++ ++||||||+++
T Consensus 187 i~~~~~~~~~~~~~~ll~-~~TGsGKT~~~ 215 (590)
T 3h1t_A 187 INRAVQSVLQGKKRSLIT-MATGTGKTVVA 215 (590)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCceEEE-ecCCCChHHHH
Confidence 344455555676655544 89999999853
No 247
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=34.02 E-value=30 Score=35.70 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=14.8
Q ss_pred CCCceeeecccccCCCcEE
Q psy16994 135 GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t 153 (932)
+..+.|...|.+|+|||..
T Consensus 8 ~~~g~v~ivG~~nvGKSTL 26 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTL 26 (308)
T ss_dssp CEEEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCcHHHH
Confidence 3456677889999999873
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.01 E-value=8.2 Score=36.07 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.9
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|+..|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999873
No 249
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=33.89 E-value=8.8 Score=42.55 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 114 HTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 114 ~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
+..|..++..++ ..+..| ...++..|+.|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 345766665533 222233 3478889999999998653
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.74 E-value=5.6 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.9
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|.-.|++|||||++
T Consensus 9 ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 9 LFIISAPSGAGKTSL 23 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 455679999999873
No 251
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=33.71 E-value=16 Score=38.44 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.3
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
..++-||++|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4567799999999984
No 252
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=33.67 E-value=35 Score=32.05 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.2
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 23 ~~ki~~vG~~~~GKSs 38 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTC 38 (194)
T ss_dssp EEEEEEECSTTSSHHH
T ss_pred eeEEEEECcCCCCHHH
Confidence 3467788999999986
No 253
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=33.62 E-value=1.9e+02 Score=25.93 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------------------------------
Q psy16994 670 SAHDEQALQKEIKNLGSLLVDKDKTIGDL---KAKIHKYEKYYAVMKEDR------------------------------ 716 (932)
Q Consensus 670 ~~~~~~~l~~~i~~l~~~l~~l~~~~~~l---~~~l~~le~~~~~l~~~l------------------------------ 716 (932)
+..++..+...+..++..+..+...+..+ ...+.++...+..+..--
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~l 86 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSV 86 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEe
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 717 -------KTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKH 763 (932)
Q Consensus 717 -------~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~ 763 (932)
..+.+.+.-+..++..+...+..+...+..+...+..+...+..+..
T Consensus 87 G~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 87 GSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 254
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=33.57 E-value=17 Score=33.65 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=12.5
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 7 ~ki~~~G~~~~GKSs 21 (181)
T 3t5g_A 7 RKIAILGYRSVGKSS 21 (181)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred EEEEEECcCCCCHHH
Confidence 357778999999987
No 255
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=33.50 E-value=42 Score=31.69 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 9 ~ki~v~G~~~~GKSs 23 (203)
T 1zbd_A 9 FKILIIGNSSVGKTS 23 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357778999999987
No 256
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=33.47 E-value=7 Score=41.46 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=17.6
Q ss_pred CCCCCcccchhHHHhhcCCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~~ 27 (932)
+.++||+||+++.||+.+...
T Consensus 129 ~~~~Giipra~~~lF~~~~~~ 149 (359)
T 3nwn_A 129 YKHRGILPRALQQVFRMIEER 149 (359)
T ss_dssp GGGBCHHHHHHHHHHHHHHTC
T ss_pred ccchhhHHHHHHHHHHHhhcC
Confidence 456899999999999987653
No 257
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=33.41 E-value=35 Score=32.29 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=12.9
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 24 ~~ki~vvG~~~~GKSs 39 (201)
T 3oes_A 24 YRKVVILGYRCVGKTS 39 (201)
T ss_dssp EEEEEEEESTTSSHHH
T ss_pred cEEEEEECCCCcCHHH
Confidence 3457778999999986
No 258
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=33.37 E-value=14 Score=40.13 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.7
Q ss_pred HHhcCCCCceeeecccccCCCcE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
..++.|.| ++..++||||||.
T Consensus 31 ~~i~~~~~--~lv~apTGsGKT~ 51 (414)
T 3oiy_A 31 KRIVQGKS--FTMVAPTGVGKTT 51 (414)
T ss_dssp HHHTTTCC--EECCSCSSSSHHH
T ss_pred HHHhcCCC--EEEEeCCCCCHHH
Confidence 34456765 5678999999997
No 259
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=33.26 E-value=14 Score=39.55 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|....++..++||||||.+
T Consensus 37 ~~~~~~~~~~~lv~a~TGsGKT~~ 60 (395)
T 3pey_A 37 PLLLHNPPRNMIAQSQSGTGKTAA 60 (395)
T ss_dssp HHHHCSSCCCEEEECCTTSCHHHH
T ss_pred HHHHcCCCCeEEEECCCCCcHHHH
Confidence 344556445677789999999974
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=33.14 E-value=5.5 Score=38.29 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.2
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.+.-.|++|||||++
T Consensus 6 ~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTL 20 (198)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456679999999874
No 261
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=33.03 E-value=43 Score=31.25 Aligned_cols=15 Identities=27% Similarity=0.291 Sum_probs=12.7
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 26 ~ki~v~G~~~~GKSs 40 (193)
T 2oil_A 26 FKVVLIGESGVGKTN 40 (193)
T ss_dssp EEEEEESSTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 457788999999986
No 262
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=33.01 E-value=8.7 Score=36.19 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.8
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|++|||||+
T Consensus 6 ~~i~l~G~~GsGKst 20 (185)
T 3trf_A 6 TNIYLIGLMGAGKTS 20 (185)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 357788999999987
No 263
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=32.96 E-value=10 Score=39.99 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=20.6
Q ss_pred CCCCC-------CCCCCcccchhHHHhhcCCCC
Q psy16994 2 GAEGT-------IEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 2 ~~~Gs-------~~~~Gi~pr~ldviFnSi~~~ 27 (932)
|-||| ..++||+||++..||+.|...
T Consensus 93 GqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~ 125 (349)
T 3t0q_A 93 GQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANL 125 (349)
T ss_dssp CSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEeCCCCCchhhHHHHHHHHHHHHh
Confidence 66666 346799999999999988753
No 264
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.91 E-value=64 Score=26.19 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy16994 769 LKIYEDRLKAVQDEL 783 (932)
Q Consensus 769 ~~~~~~~~~~~~~el 783 (932)
...|++++..+..+|
T Consensus 70 Kq~YEeEI~rLr~eL 84 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 265
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=32.88 E-value=6.6 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.6
Q ss_pred hcCCCCceeeecccccCCCcEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+++|++-.|...|++|+|||+.
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTL 47 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTL 47 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHH
Confidence 5788898899999999999874
No 266
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=32.60 E-value=22 Score=37.81 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.7
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...++-||++|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999843
No 267
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=32.55 E-value=18 Score=35.02 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.7
Q ss_pred CCceeeecccccCCCcE
Q psy16994 136 EDALLFSFGTTNSGKTF 152 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~ 152 (932)
....|...|.+|+|||.
T Consensus 28 ~~~~i~v~G~~~~GKSs 44 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKST 44 (223)
T ss_dssp CSCEEEEEESCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHH
Confidence 34567778999999987
No 268
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=32.53 E-value=37 Score=32.31 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.9
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
.-|+..|.+|+|||..
T Consensus 21 ~~i~v~G~~~~GKSsl 36 (213)
T 3cph_A 21 MKILLIGDSGVGKSCL 36 (213)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577789999999873
No 269
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=32.48 E-value=7.2 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=14.1
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...|.-.|++|||||+++
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346666799999999864
No 270
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=32.34 E-value=34 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.7
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 7 ~~i~v~G~~~~GKss 21 (170)
T 1z08_A 7 FKVVLLGEGCVGKTS 21 (170)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 457788999999987
No 271
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=32.15 E-value=47 Score=31.18 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.0
Q ss_pred CCceeeecccccCCCcE
Q psy16994 136 EDALLFSFGTTNSGKTF 152 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~ 152 (932)
...-|+..|.+|+|||.
T Consensus 27 ~~~ki~v~G~~~vGKSs 43 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSA 43 (196)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 45567888999999987
No 272
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=32.13 E-value=42 Score=30.96 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.5
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 19 ~ki~v~G~~~~GKSs 33 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSA 33 (187)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357778999999987
No 273
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=31.95 E-value=40 Score=31.28 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.0
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 7 ~~ki~v~G~~~vGKSs 22 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTA 22 (184)
T ss_dssp EEEEEEEESTTSSHHH
T ss_pred EEEEEEECCCCCCHHH
Confidence 3457778999999987
No 274
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=31.82 E-value=35 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=13.2
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
...|+..|.+|+|||.
T Consensus 8 ~~ki~vvG~~~~GKSs 23 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSS 23 (199)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred eeEEEEECCCCCcHHH
Confidence 4467778999999987
No 275
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.76 E-value=16 Score=34.95 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=13.6
Q ss_pred CCceeeecccccCCCcE
Q psy16994 136 EDALLFSFGTTNSGKTF 152 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~ 152 (932)
....|...|++|||||+
T Consensus 21 ~~~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTT 37 (201)
T ss_dssp SSEEEEEEECTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34567778999999987
No 276
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=31.57 E-value=14 Score=41.40 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+..++..++||||||++
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHH
Confidence 344566445677889999999975
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=31.56 E-value=23 Score=37.28 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 120 LFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 120 v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+-+.++..+-..+-.|.-..|+.+|+.|+|||+..
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHH
Confidence 33333333323333576667888999999999854
No 278
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=31.54 E-value=34 Score=32.07 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 24 ~ki~vvG~~~~GKSs 38 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSS 38 (192)
T ss_dssp EEEEEEECTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 457778999999987
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=31.48 E-value=9.2 Score=35.85 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=13.8
Q ss_pred ceeeecccccCCCcEEE
Q psy16994 138 ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~ 154 (932)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 45778999999999843
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=31.35 E-value=8.9 Score=37.56 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=19.0
Q ss_pred HHHHHhcC-CC--CceeeecccccCCCcEEE
Q psy16994 127 NMLERYLN-GE--DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 127 ~~v~~~~~-g~--~~~i~~~G~tgsGKt~t~ 154 (932)
+-++.++. |. ...+.-+|++|||||+++
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44555663 33 346777899999999753
No 281
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=31.29 E-value=50 Score=30.72 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.5
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|.+|+|||.
T Consensus 16 ~~i~v~G~~~~GKss 30 (195)
T 1x3s_A 16 LKILIIGESGVGKSS 30 (195)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 357778999999987
No 282
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=31.25 E-value=30 Score=32.29 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.0
Q ss_pred CCceeeecccccCCCcEEE
Q psy16994 136 EDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 136 ~~~~i~~~G~tgsGKt~t~ 154 (932)
...-|+..|.+|+|||..+
T Consensus 21 ~~~~i~v~G~~~~GKssli 39 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSIL 39 (189)
T ss_dssp SCEEEEEEEETTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4556888899999998743
No 283
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=31.19 E-value=42 Score=31.33 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.3
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 21 ~~ki~vvG~~~vGKTs 36 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSA 36 (187)
T ss_dssp EEEEEEECCTTSSHHH
T ss_pred eEEEEEECCCCCcHHH
Confidence 3467788999999987
No 284
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=31.09 E-value=10 Score=40.52 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=14.9
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...|+-||++|+|||++.
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999853
No 285
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.05 E-value=6.4 Score=37.12 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.6
Q ss_pred eeecccccCCCcEE
Q psy16994 140 LFSFGTTNSGKTFT 153 (932)
Q Consensus 140 i~~~G~tgsGKt~t 153 (932)
+.-.|++|||||+.
T Consensus 3 i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 3 IIITGEPGVGKTTL 16 (178)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45589999999985
No 286
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.00 E-value=12 Score=38.54 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=14.6
Q ss_pred CceeeecccccCCCcEEEe
Q psy16994 137 DALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~ 155 (932)
...|...|++|+|||+++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466667999999998653
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.95 E-value=15 Score=41.06 Aligned_cols=25 Identities=24% Similarity=0.390 Sum_probs=17.2
Q ss_pred HHHhcCCCCceeeecccccCCCcEEEe
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t~~ 155 (932)
+..+..| ..|+-||++|+|||+...
T Consensus 35 ~~al~~~--~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 35 LLAALSG--ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHT--CEEEEECCSSSSHHHHHH
T ss_pred HHHHhcC--CeeEeecCchHHHHHHHH
Confidence 3333444 367789999999998543
No 288
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=30.82 E-value=55 Score=30.41 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=12.5
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
-|+..|.+|+|||..
T Consensus 24 ki~vvG~~~~GKSsl 38 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSF 38 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567789999999873
No 289
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=30.66 E-value=28 Score=32.53 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.2
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
...|+..|.+|+|||.
T Consensus 20 ~~ki~v~G~~~~GKSs 35 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTC 35 (189)
T ss_dssp EEEEEEECCTTSSHHH
T ss_pred eEEEEEECCCCCCHHH
Confidence 3467788999999987
No 290
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=30.48 E-value=16 Score=39.44 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=16.0
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+ ++..++||||||.+
T Consensus 69 ~~i~~~~~--~lv~a~TGsGKT~~ 90 (410)
T 2j0s_A 69 KQIIKGRD--VIAQSQSGTGKTAT 90 (410)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHhCCCC--EEEECCCCCCchHH
Confidence 33456766 56678999999963
No 291
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.46 E-value=11 Score=44.75 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 127 NMLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 127 ~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
.++..+.......++-||++|+|||+.+.+
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 344444455566778899999999985544
No 292
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=30.36 E-value=22 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.8
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.+ ++..++||+|||.+
T Consensus 55 ~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 55 VTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHcCCC--EEEEECCCChHHHH
Confidence 3456776 56678999999964
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=30.30 E-value=12 Score=40.14 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.0
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457889999999999853
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=30.16 E-value=10 Score=35.17 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=12.3
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|++|||||+
T Consensus 6 ~i~l~G~~GsGKST 19 (173)
T 1kag_A 6 NIFLVGPMGAGKST 19 (173)
T ss_dssp CEEEECCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 57778999999987
No 295
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=30.09 E-value=50 Score=31.33 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.7
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
.-|+..|.+|+|||.
T Consensus 27 ~ki~lvG~~~vGKSs 41 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTC 41 (201)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 457788999999987
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=29.71 E-value=9.5 Score=37.57 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=8.5
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999843
No 297
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=29.61 E-value=24 Score=32.26 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.1
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
.-|+..|.+|+|||..
T Consensus 5 ~ki~i~G~~~vGKSsl 20 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSL 20 (175)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCccHHHH
Confidence 4577889999999873
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=29.56 E-value=11 Score=36.11 Aligned_cols=15 Identities=33% Similarity=0.425 Sum_probs=12.9
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|++|||||+
T Consensus 26 ~~i~l~G~~GsGKsT 40 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTT 40 (199)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred CEEEEEcCCCCCHHH
Confidence 367788999999987
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=29.22 E-value=11 Score=34.79 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=12.6
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|+-.|++|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999873
No 300
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.19 E-value=16 Score=38.83 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.9
Q ss_pred ceeeecccccCCCcEEE
Q psy16994 138 ALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~ 154 (932)
.+|.-.|++|||||+++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35667799999999864
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=29.19 E-value=13 Score=35.57 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.3
Q ss_pred CCCceeeecccccCCCcE
Q psy16994 135 GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~ 152 (932)
.....|+..|++|||||+
T Consensus 23 ~~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKST 40 (200)
T ss_dssp SCCEEEEEECSTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 345567778999999987
No 302
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.07 E-value=26 Score=41.60 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHHhcCCCCceeeecccccCCCcEEEec
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt~t~~G 156 (932)
++..+..+....++-||++|+|||..+.+
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 44444445556688899999999884433
No 303
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.94 E-value=11 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.1
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
.+|+-.|++|||||+.
T Consensus 10 ~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI 25 (191)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577789999999883
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=28.84 E-value=22 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=15.5
Q ss_pred CceeeecccccCCCcEEEec
Q psy16994 137 DALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G 156 (932)
...|+..|++|+|||+|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34666779999999997654
No 305
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=28.82 E-value=7.1 Score=38.35 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=15.6
Q ss_pred CceeeecccccCCCcEEEec
Q psy16994 137 DALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~G 156 (932)
...++-+|++|+|||+.+.|
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 45778899999999985443
No 306
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=28.81 E-value=19 Score=34.70 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHHhcC-CC--CceeeecccccCCCcEEE
Q psy16994 127 NMLERYLN-GE--DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 127 ~~v~~~~~-g~--~~~i~~~G~tgsGKt~t~ 154 (932)
+-++.++. |. ...+.-+|++|+|||+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 44566665 44 356788999999999754
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=28.81 E-value=11 Score=37.74 Aligned_cols=14 Identities=50% Similarity=0.591 Sum_probs=12.2
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|++|||||+
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 46788999999987
No 308
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=28.77 E-value=20 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.7
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
...|+..|.+|+|||.
T Consensus 7 ~~ki~vvG~~~~GKTs 22 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTL 22 (214)
T ss_dssp -CEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3457778999999986
No 309
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=28.75 E-value=29 Score=32.88 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.3
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
...|+..|.+|+|||.
T Consensus 28 ~~ki~v~G~~~~GKSs 43 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSS 43 (199)
T ss_dssp CEEEEEESSTTSSHHH
T ss_pred CeEEEEECcCCCCHHH
Confidence 4567788999999987
No 310
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=28.65 E-value=16 Score=42.87 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.0
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
.|..+|.+++|||..+
T Consensus 53 ~I~vvG~~saGKSSll 68 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVL 68 (772)
T ss_dssp EEEEEECTTTCHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5777899999999753
No 311
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.63 E-value=1.2e+02 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy16994 485 KIQNLKQELSELEAKYKS 502 (932)
Q Consensus 485 ~i~~l~~~l~~l~~~l~~ 502 (932)
.|.+|+..+..++.....
T Consensus 30 ~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 312
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.61 E-value=1.7e+02 Score=21.77 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhhhH
Q psy16994 488 NLKQELSELEAKYKSL 503 (932)
Q Consensus 488 ~l~~~l~~l~~~l~~l 503 (932)
.++.....++.+...|
T Consensus 27 ~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 27 ALTGECKELEKKNEAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 313
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=28.59 E-value=16 Score=39.22 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=14.8
Q ss_pred hcCCCCceeeecccccCCCcEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t 153 (932)
++.|.+ ++..++||||||.+
T Consensus 55 i~~~~~--~li~a~TGsGKT~~ 74 (400)
T 1s2m_A 55 AITGRD--ILARAKNGTGKTAA 74 (400)
T ss_dssp HHHTCC--EEEECCTTSCHHHH
T ss_pred HhcCCC--EEEECCCCcHHHHH
Confidence 345665 56678999999964
No 314
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=28.56 E-value=8.2 Score=41.77 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.6
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
|..++..|++|||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 444566799999999843
No 315
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=28.51 E-value=19 Score=37.53 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=15.0
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.+ ++..++||||||.+
T Consensus 27 ~i~~~~~--~lv~~~TGsGKT~~ 47 (337)
T 2z0m_A 27 LMLQGKN--VVVRAKTGSGKTAA 47 (337)
T ss_dssp HHHTTCC--EEEECCTTSSHHHH
T ss_pred HHhcCCC--EEEEcCCCCcHHHH
Confidence 3445665 55678999999974
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=28.47 E-value=12 Score=35.17 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.4
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
..|+-.|++|||||+.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678899999999874
No 317
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=28.32 E-value=9.6 Score=40.36 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=17.0
Q ss_pred CCCcccchhHHHhhcCCCC
Q psy16994 9 QPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 9 ~~Gi~pr~ldviFnSi~~~ 27 (932)
++||+||++.-||+.|...
T Consensus 130 ~~Giipra~~~lF~~i~~~ 148 (358)
T 2nr8_A 130 HRGILPRALQQVFRMIEER 148 (358)
T ss_dssp GBCHHHHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHHhhc
Confidence 5999999999999999764
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=28.23 E-value=15 Score=35.19 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=14.2
Q ss_pred CCCceeeecccccCCCcE
Q psy16994 135 GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~ 152 (932)
-....|+-.|+||+|||.
T Consensus 32 ~~g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSE 49 (205)
T ss_dssp ETTEEEEEECCCTTTTHH
T ss_pred ECCEEEEEECCCCCCHHH
Confidence 345567888999999975
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=28.23 E-value=7.8 Score=36.74 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.2
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.+.-.|++|||||++
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 456679999999873
No 320
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=28.18 E-value=30 Score=32.96 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=14.1
Q ss_pred CCCceeeecccccCCCcEE
Q psy16994 135 GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t 153 (932)
....-|+..|.+|+|||..
T Consensus 28 ~~~~ki~vvG~~~~GKSsL 46 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCL 46 (204)
T ss_dssp --CEEEEEEESTTSSHHHH
T ss_pred CCeEEEEEECcCCCCHHHH
Confidence 4456778889999999873
No 321
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=28.13 E-value=27 Score=35.02 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=12.3
Q ss_pred EEEEEEeCCCCcccc
Q psy16994 215 SSFDICDLAGAERQK 229 (932)
Q Consensus 215 s~l~~vDLagse~~~ 229 (932)
..+.|||++|.....
T Consensus 48 ~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 48 HLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEEECCCCSSCC
T ss_pred eEEEEEeCCCccccc
Confidence 378999999987654
No 322
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=28.11 E-value=42 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.1
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 8 ~~ki~v~G~~~~GKSs 23 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTS 23 (207)
T ss_dssp EEEEEEECCTTSSHHH
T ss_pred ceEEEEECcCCCCHHH
Confidence 3457788999999987
No 323
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=28.07 E-value=7.5 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=16.0
Q ss_pred hcCCCCceeeecccccCCCcEEE
Q psy16994 132 YLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 132 ~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+++|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 56788888999999999999854
No 324
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=28.04 E-value=8.8 Score=44.28 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.8
Q ss_pred CceeeecccccCCCcEEEe
Q psy16994 137 DALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~~ 155 (932)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 4577889999999998754
No 325
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=27.96 E-value=7.6 Score=39.51 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.0
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
+-++...|++|+|||++|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 345677899999999843
No 326
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.64 E-value=6.5 Score=37.30 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=13.9
Q ss_pred eeeecccccCCCcEEEe
Q psy16994 139 LLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~ 155 (932)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999998543
No 327
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.53 E-value=28 Score=35.82 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.3
Q ss_pred eeeecccccCCCcEEEe
Q psy16994 139 LLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~ 155 (932)
.|...|++|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999998654
No 328
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.32 E-value=7.8 Score=37.96 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.8
Q ss_pred ceeeecccccCCCcEEEec
Q psy16994 138 ALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~G 156 (932)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4588999999999997543
No 329
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=27.03 E-value=36 Score=39.55 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=46.1
Q ss_pred eecceecCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEEec-------ceEEEecCHHHHHHHHHh
Q psy16994 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD-------LTYVNVHSCEEAYRVLRF 174 (932)
Q Consensus 105 f~fd~v~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~~G-------l~~~~v~s~~~~~~~l~~ 174 (932)
|....-|.|...|..-+.. ++..+-.|... ....|.|||||||+|.. -.-|.+.+...|..+...
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 6667778899999887765 45555556432 34569999999999876 235667777777776654
No 330
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=27.01 E-value=50 Score=31.43 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 28 ~~ki~vvG~~~vGKSs 43 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTA 43 (205)
T ss_dssp EEEEEEEESTTSSHHH
T ss_pred eeEEEEECCCCCCHHH
Confidence 4567888999999986
No 331
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.83 E-value=13 Score=36.28 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.7
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
-.||.+|++||||++
T Consensus 30 kiI~llGpPGsGKgT 44 (217)
T 3umf_A 30 KVIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEEECCTTCCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 467889999999976
No 332
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=26.75 E-value=8.6 Score=37.16 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=11.8
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
++.-.|++|||||++
T Consensus 22 i~~l~GpnGsGKSTL 36 (207)
T 1znw_A 22 VVVLSGPSAVGKSTV 36 (207)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 445569999999974
No 333
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=26.73 E-value=53 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=12.6
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
+.|...|.+|+|||..
T Consensus 8 g~V~ivG~~nvGKSTL 23 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTL 23 (301)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3466779999999873
No 334
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=26.62 E-value=52 Score=30.95 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=13.3
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
..-|+..|.+|+|||..
T Consensus 20 ~~ki~~~G~~~~GKssl 36 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSL 36 (201)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34577789999999873
No 335
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.60 E-value=8.5 Score=37.65 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=11.6
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.+.-.|++|||||++
T Consensus 25 ~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 25 PLVICGPSGVGKGTL 39 (218)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 344569999999874
No 336
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=26.58 E-value=13 Score=35.76 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=12.2
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+..|++|||||+
T Consensus 13 ~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 13 PPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCEEEECCTTSCHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 356678999999976
No 337
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.55 E-value=2.9e+02 Score=30.20 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=5.9
Q ss_pred ccccccchh
Q psy16994 890 PRSRCKSTS 898 (932)
Q Consensus 890 ~~~~~~~~~ 898 (932)
|+.++|-+.
T Consensus 245 pTaE~pl~~ 253 (485)
T 3qne_A 245 ATSEQPISA 253 (485)
T ss_dssp SSTHHHHHH
T ss_pred ccccHHHHH
Confidence 666677665
No 338
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=26.48 E-value=23 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=13.6
Q ss_pred CCCceeeecccccCCCcE
Q psy16994 135 GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~ 152 (932)
+....|.-.|++|||||+
T Consensus 29 ~~~~ii~I~G~sGsGKST 46 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSF 46 (290)
T ss_dssp CSCEEEEEECCTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 334456667999999987
No 339
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.47 E-value=1.6e+02 Score=20.17 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy16994 826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQ 856 (932)
Q Consensus 826 ~~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~ 856 (932)
.+.+++..-..+++++..|+.+++.+...++
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666655544
No 340
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.44 E-value=13 Score=36.03 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=11.8
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-+|++||||++
T Consensus 2 ~Iil~GpPGsGKgT 15 (206)
T 3sr0_A 2 ILVFLGPPGAGKGT 15 (206)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999975
No 341
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=26.41 E-value=26 Score=33.93 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=13.6
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
..-|+..|.+|+|||..
T Consensus 15 ~~ki~v~G~~~~GKSsl 31 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTF 31 (221)
T ss_dssp EEEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34577889999999873
No 342
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=26.33 E-value=22 Score=40.49 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=17.5
Q ss_pred HHhcCCCCceeeecccccCCCcEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
..++.|.+..++..++||||||.+
T Consensus 104 ~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 104 KPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHhcCCCCeEEEECCCCCCccHH
Confidence 334455556778889999999974
No 343
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=26.28 E-value=21 Score=39.38 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=17.7
Q ss_pred HHHhcCCCCceeeecccccCCCcEE
Q psy16994 129 LERYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 129 v~~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
+..++.|.+ .++..|+||||||..
T Consensus 12 i~~~l~~~~-~~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKR-LTIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTC-EEEECCCTTSSCCTT
T ss_pred HHHHHhcCC-eEEEECCCCCCHhhH
Confidence 445667765 456789999999974
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=26.01 E-value=14 Score=34.73 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.8
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|+-.|+.|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999874
No 345
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=25.89 E-value=53 Score=31.27 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.2
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 9 ~~ki~i~G~~~~GKTs 24 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTC 24 (212)
T ss_dssp EEEEEEEESTTSSHHH
T ss_pred eEEEEEECCCCCCHHH
Confidence 3457788999999987
No 346
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=25.77 E-value=11 Score=40.07 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.7
Q ss_pred CCCCCcccchhHHHhhcCCCC
Q psy16994 7 IEQPGIIPRTLNILFNSLGPY 27 (932)
Q Consensus 7 ~~~~Gi~pr~ldviFnSi~~~ 27 (932)
+.++||+||+++.||+.|...
T Consensus 141 ~~~~Giipr~~~~lF~~i~~~ 161 (376)
T 2rep_A 141 PQLEGLIPRALRHLFSVAQEL 161 (376)
T ss_dssp GGGBCHHHHHHHHHHHHHHHG
T ss_pred cccCCcHHHHHHHHHHHHHHh
Confidence 347899999999999988653
No 347
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=25.68 E-value=14 Score=42.88 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.1
Q ss_pred ceeeecccccCCCcEEEec
Q psy16994 138 ALLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~G 156 (932)
..++..|++|||||+|+..
T Consensus 196 ~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3566789999999998644
No 348
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=25.62 E-value=14 Score=35.34 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.9
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|.-.|++|||||+
T Consensus 8 ~i~l~G~~GsGKST 21 (207)
T 2j41_A 8 LIVLSGPSGVGKGT 21 (207)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 56678999999987
No 349
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=25.44 E-value=34 Score=32.02 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.5
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
.|+..|.+|+|||..
T Consensus 23 ki~v~G~~~~GKSsl 37 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCL 37 (191)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 577789999999873
No 350
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.39 E-value=2.9e+02 Score=22.81 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAE-----LKTKCEELTQQVTKLEADCQSYLNTIKNMEND 757 (932)
Q Consensus 693 ~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~-----l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~e 757 (932)
..+++++.++...+.++...+.++.+.+..... -...+..-+..+..++.++.+++..+......
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va~ 104 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVAA 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=25.35 E-value=13 Score=35.02 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.5
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
..|+..|.+|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999873
No 352
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=25.28 E-value=14 Score=34.21 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.8
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+-.|++|||||+
T Consensus 9 ~~i~l~G~~GsGKST 23 (175)
T 1knq_A 9 HIYVLMGVSGSGKSA 23 (175)
T ss_dssp EEEEEECSTTSCHHH
T ss_pred cEEEEEcCCCCCHHH
Confidence 467778999999987
No 353
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=25.22 E-value=23 Score=38.22 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=14.9
Q ss_pred HhcCCCCceeeecccccCCCcE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.++.|.| ++..++||||||.
T Consensus 48 ~i~~~~~--~lv~a~TGsGKT~ 67 (417)
T 2i4i_A 48 IIKEKRD--LMACAQTGSGKTA 67 (417)
T ss_dssp HHHTTCC--EEEECCTTSCHHH
T ss_pred HHccCCC--EEEEcCCCCHHHH
Confidence 3456766 4567899999996
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=25.06 E-value=14 Score=34.70 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=13.4
Q ss_pred ceeeecccccCCCcEE
Q psy16994 138 ALLFSFGTTNSGKTFT 153 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t 153 (932)
..|+-.|..|||||+.
T Consensus 11 ~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 11 INILITGTPGTGKTSM 26 (184)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3578899999999974
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=25.01 E-value=17 Score=33.84 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=9.1
Q ss_pred ceeeecccccCCCcE
Q psy16994 138 ALLFSFGTTNSGKTF 152 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~ 152 (932)
..|+-.|..|||||+
T Consensus 6 ~~I~l~G~~GsGKST 20 (183)
T 2vli_A 6 PIIWINGPFGVGKTH 20 (183)
T ss_dssp CEEEEECCC----CH
T ss_pred eEEEEECCCCCCHHH
Confidence 468889999999987
No 356
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=24.99 E-value=3.3e+02 Score=23.42 Aligned_cols=95 Identities=20% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH----------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy16994 482 HKLKIQNLKQELSELEAKYKSLSEEHED----------MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551 (932)
Q Consensus 482 ~k~~i~~l~~~l~~l~~~l~~l~~~l~~----------~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 551 (932)
+..++..++..+..++..+..+...-.. ++..+..-..++..+ ..+...+..+..++..++
T Consensus 11 l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le----- 81 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLE----- 81 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHH-----
Q ss_pred CCChHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 552 ENKPEEVKYLKSL-------LDEAKEEFKEQTTEIEQLRSEVEKL 589 (932)
Q Consensus 552 ~~~~~~~~~l~~~-------l~~~~~~l~~l~~~i~~l~~~l~~l 589 (932)
.++..+... ...++..+...+.++...+..+..+
T Consensus 82 ----~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 82 ----DQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp ----HHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 357
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.91 E-value=1.3e+02 Score=21.69 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhHhhH
Q psy16994 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKL 514 (932)
Q Consensus 484 ~~i~~l~~~l~~l~~~l~~l~~~l~~~~~~l 514 (932)
..++.|..++.+++.++..|..++..+..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 358
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.91 E-value=9.6 Score=36.30 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=12.7
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
.+.-.|++|+|||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4566799999999853
No 359
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=24.85 E-value=9.7 Score=41.85 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.4
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
+.-++.+|+||||||+++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566788899999999875
No 360
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=24.83 E-value=4.4e+02 Score=24.81 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=7.1
Q ss_pred hHHHHHhcCchHHHHHHH
Q psy16994 793 PSLEASAATPSQYRKQLE 810 (932)
Q Consensus 793 ~~L~~~l~~~~~~~~~l~ 810 (932)
..+..++..+...+..+.
T Consensus 158 ~~l~eki~~vN~~y~~~~ 175 (199)
T 2ap3_A 158 QGVNEKSKAIEQNYKKLK 175 (199)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444333333333
No 361
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=24.78 E-value=65 Score=30.82 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=12.9
Q ss_pred CceeeecccccCCCcE
Q psy16994 137 DALLFSFGTTNSGKTF 152 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~ 152 (932)
..-|+..|.+|+|||.
T Consensus 27 ~~ki~vvG~~~vGKSs 42 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTA 42 (214)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred eEEEEEECcCCCCHHH
Confidence 3457778999999986
No 362
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=24.70 E-value=31 Score=21.12 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=13.3
Q ss_pred CCCCCCcccchhHHH
Q psy16994 6 TIEQPGIIPRTLNIL 20 (932)
Q Consensus 6 s~~~~Gi~pr~ldvi 20 (932)
|.++||--+||+||-
T Consensus 17 sitdpgerqrcidmy 31 (36)
T 2jyp_A 17 SITDPGERQRCIDMY 31 (36)
T ss_dssp TTTTTTCTTCGGGTT
T ss_pred eecCcchhhhhhhhe
Confidence 678999999999984
No 363
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=24.67 E-value=24 Score=38.62 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=15.6
Q ss_pred HhcCCCCceeeecccccCCCcEE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~t 153 (932)
.++.|.+ +++.++||||||..
T Consensus 89 ~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 89 VISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHTTCC--EEEECCTTSSHHHH
T ss_pred HHhcCCC--EEEECCCCCCchHH
Confidence 3456765 56778999999973
No 364
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=24.63 E-value=10 Score=37.14 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=12.0
Q ss_pred eeeecccccCCCcEE
Q psy16994 139 LLFSFGTTNSGKTFT 153 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t 153 (932)
++.-.|++|||||+.
T Consensus 18 ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 18 LYIVSAPSGAGKSSL 32 (219)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 555679999999873
No 365
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=24.54 E-value=29 Score=37.07 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=13.7
Q ss_pred CceeeecccccCCCcEE
Q psy16994 137 DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t 153 (932)
..+|.-+|++|||||+.
T Consensus 169 ~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34677799999999873
No 366
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.54 E-value=11 Score=37.53 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=13.8
Q ss_pred ceeeecccccCCCcEEEe
Q psy16994 138 ALLFSFGTTNSGKTFTIQ 155 (932)
Q Consensus 138 ~~i~~~G~tgsGKt~t~~ 155 (932)
..+.-+|++|||||+++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 445568999999998653
No 367
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.39 E-value=32 Score=40.81 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCc------eeeecccccCCCcE
Q psy16994 115 TTQAELFQNIVHNMLERYLNGEDA------LLFSFGTTNSGKTF 152 (932)
Q Consensus 115 ~~q~~v~~~~~~~~v~~~~~g~~~------~i~~~G~tgsGKt~ 152 (932)
..|..+... +...+.....|... .++-||++|+|||+
T Consensus 494 iGq~~a~~~-l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~ 536 (758)
T 3pxi_A 494 IGQDEAVVA-VAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE 536 (758)
T ss_dssp CSCHHHHHH-HHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHH
T ss_pred cChHHHHHH-HHHHHHHHHcccCCCCCCceEEEEECCCCCCHHH
No 368
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.27 E-value=33 Score=40.64 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCceeeecccccCCCc
Q psy16994 119 ELFQNIVHNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 119 ~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
.+-..++..++...-.|....++..|+||||||
T Consensus 371 ~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKT 403 (780)
T 1gm5_A 371 NAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKT 403 (780)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHH
T ss_pred HHHHHHHHHHHhhccccCCCcEEEEcCCCCCHH
No 369
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=24.23 E-value=58 Score=30.35 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|+..|.+|+|||. ++..|..+.-.-...+|. ...|...+...... -.+.|
T Consensus 21 i~v~G~~~~GKss---------------li~~l~~~~~~~~~~~t~--------~~~~~~~~~~~~~~-------~~~~i 70 (194)
T 2atx_A 21 CVVVGDGAVGKTC---------------LLMSYANDAFPEEYVPTV--------FDHYAVSVTVGGKQ-------YLLGL 70 (194)
T ss_dssp EEEEECTTSSHHH---------------HHHHHHHSSCCCSCCCSS--------CCCEEEEEESSSCE-------EEEEE
T ss_pred EEEECCCCCCHHH---------------HHHHHhcCCCCCCCCCcc--------cceeEEEEEECCEE-------EEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 71 ~D~~G~~~ 78 (194)
T 2atx_A 71 YDTAGQED 78 (194)
T ss_dssp ECCCCSSS
T ss_pred EECCCCcc
No 370
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.23 E-value=2e+02 Score=20.58 Aligned_cols=47 Identities=6% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQS 746 (932)
Q Consensus 700 ~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~ 746 (932)
.++..+..++..+..++..|..++..++..+.....+-.....++..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 371
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.13 E-value=1.7e+02 Score=22.48 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755 (932)
Q Consensus 713 ~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~ 755 (932)
...+.+|+.++..+......+..+...+...+..+..++..+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 372
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=24.09 E-value=5.7e+02 Score=25.80 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 591 EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEK----LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAE 666 (932)
Q Consensus 591 ~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~----l~~l~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 666 (932)
..+..+-.+...+..++......+..+......+... ...+...+.. +......+......-...+.... .
T Consensus 37 ~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~----l~~~w~~L~~~~~~R~~~Le~~l-~ 111 (326)
T 3kbt_A 37 EGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQ----VDKHYAGLKDVAEERKRKLENMY-H 111 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHH
Q psy16994 667 SNQSAHDEQALQKEIKNLGSLLVDKD-----KTIGDLKAKIHKYEKYYAV-MKEDRKTKEKDIAELKTK----CEELTQQ 736 (932)
Q Consensus 667 l~~~~~~~~~l~~~i~~l~~~l~~l~-----~~~~~l~~~l~~le~~~~~-l~~~l~~l~~~l~~l~~~----~~~l~~~ 736 (932)
+..+...+..+..=+...+..+.... ..+..+......+..++.. ....+..+......+-.. ...+...
T Consensus 112 l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~ 191 (326)
T 3kbt_A 112 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEW 191 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------hHHHHHhcCchHHHH
Q psy16994 737 VTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK---------PSLEASAATPSQYRK 807 (932)
Q Consensus 737 l~~l~~~l~~l~~~l~~l~~el~~l~~~l~~~~~~~~~~~~~~~~el~~l~~~~~~---------~~L~~~l~~~~~~~~ 807 (932)
+..+...-..+...+..-...+.... .+.. |......+...+......+.. ..+..+...+..++.
T Consensus 192 ~~~l~~~W~~l~~~~~~r~~~L~~a~-~~~~----f~~~~~e~~~Wl~ek~~~L~~~~~~d~~~~~~ll~~~~~~e~~l~ 266 (326)
T 3kbt_A 192 KDGLNEMWADLLELIDTRMQLLAASY-DLHR----YFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVH 266 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHC---------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccch
Q psy16994 808 QLEDQVNSLKAELEQRHNV-----VRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPL 862 (932)
Q Consensus 808 ~l~~e~~~l~~el~~~~~~-----~~~l~~~l~~~~~~~~~L~~~l~~~~~~~~~~~~~l 862 (932)
.....+..+......+... ...+...+..+......|...+.+-...+.+.....
T Consensus 267 ~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~ 326 (326)
T 3kbt_A 267 LLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 373
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.98 E-value=1.7e+02 Score=20.99 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 577 TEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607 (932)
Q Consensus 577 ~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l 607 (932)
..++.++.+..+++.++..|..++.++..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=23.96 E-value=64 Score=29.51 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|...|.+|+|||. |-..................+....-.+.+.. ..+.|
T Consensus 7 i~ivG~~g~GKSt-------------------Ll~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~l 56 (172)
T 2gj8_A 7 VVIAGRPNAGKSS-------------------LLNALAGREAAIVTDIAGTTRDVLREHIHIDG-----------MPLHI 56 (172)
T ss_dssp EEEEESTTSSHHH-------------------HHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-----------EEEEE
T ss_pred EEEECCCCCCHHH-------------------HHHHHhCCCcceeeCCCCceeceeeEEEEECC-----------eEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 57 ~Dt~G~~~ 64 (172)
T 2gj8_A 57 IDTAGLRE 64 (172)
T ss_dssp EECCCCSC
T ss_pred EECCCccc
No 375
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=23.86 E-value=16 Score=37.15 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
...+..++.|.++.| .++||||||
T Consensus 119 ~~ai~~~l~~~~~ll--~~~tGsGKT 142 (282)
T 1rif_A 119 KDAVFEGLVNRRRIL--NLPTSAGRS 142 (282)
T ss_dssp HHHHHHHHHHSEEEE--CCCTTSCHH
T ss_pred HHHHHHHHhcCCeEE--EcCCCCCcH
No 376
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=23.75 E-value=55 Score=31.55 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|+..|.+|+|||. ++..|..+.......+|. ..-|.......+... -.+.|
T Consensus 16 i~v~G~~~vGKSs---------------li~~l~~~~~~~~~~~t~--------~~~~~~~~~~~~~~~------~~~~i 66 (223)
T 3cpj_B 16 IVLIGDSGVGKSN---------------LLSRFTKNEFNMDSKSTI--------GVEFATRTLEIEGKR------IKAQI 66 (223)
T ss_dssp EEEESCTTSSHHH---------------HHHHHHHCCCCC--------------CCSEEEEEEEETTEE------EEEEE
T ss_pred EEEECcCCCCHHH---------------HHHHHhcCCCCCCCCCcc--------cceeEEEEEEECCEE------EEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 67 ~Dt~G~~~ 74 (223)
T 3cpj_B 67 WDTAGQER 74 (223)
T ss_dssp ECCTTTTT
T ss_pred EECCCccc
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=23.67 E-value=16 Score=34.47 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|.+|||||+
T Consensus 5 ~I~l~G~~GsGKsT 18 (196)
T 1tev_A 5 VVFVLGGPGAGKGT 18 (196)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 378
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=23.65 E-value=15 Score=34.53 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|++|||||+
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
No 379
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=23.64 E-value=14 Score=43.11 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHhcCCCCceeeecccccCCCcEEE
Q psy16994 130 ERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 130 ~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..++.-.++.++..|+.|||||+|+
T Consensus 15 ~~av~~~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 15 REAVAAPRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp HHHHTCCSSCEEEEECTTSCHHHHH
T ss_pred HHHHhCCCCCEEEEECCCCCHHHHH
No 380
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=23.64 E-value=11 Score=40.21 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=0.0
Q ss_pred CceeeecccccCCCcEEE
Q psy16994 137 DALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt~t~ 154 (932)
...+.-.|+||||||+++
T Consensus 175 G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TCCEEEEESSSSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
No 381
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=23.45 E-value=27 Score=37.26 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
...+..++.|.+ ++..++||+|||
T Consensus 36 ~~~i~~~~~~~~--~lv~a~TGsGKT 59 (391)
T 1xti_A 36 HECIPQAILGMD--VLCQAKSGMGKT 59 (391)
T ss_dssp HHHHHHHTTTCC--EEEECSSCSSHH
T ss_pred HHHHHHHhcCCc--EEEECCCCCcHH
No 382
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.45 E-value=2.7e+02 Score=29.93 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy16994 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH-KYEKYYAVMKEDRKTKEKDIA 724 (932)
Q Consensus 646 ~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~-~le~~~~~l~~~l~~l~~~l~ 724 (932)
+..+....+.+...+........ -..+..+..+...+..+++.++.+...+.+++. ........+..+...+..+++
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~ 81 (421)
T 1ses_A 4 LKRLRQEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK 81 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16994 725 ELKTKCEELTQQVTKL 740 (932)
Q Consensus 725 ~l~~~~~~l~~~l~~l 740 (932)
.+..++..++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 82 RLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 383
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=23.40 E-value=19 Score=42.33 Aligned_cols=23 Identities=35% Similarity=0.730 Sum_probs=0.0
Q ss_pred CCCCC-------CCCCCcccchhHHHhhcC
Q psy16994 2 GAEGT-------IEQPGIIPRTLNILFNSL 24 (932)
Q Consensus 2 ~~~Gs-------~~~~Gi~pr~ldviFnSi 24 (932)
|.||| ..++||+||++.-||+.|
T Consensus 470 GqtgsGKT~Tm~g~~~Giipr~~~~lf~~~ 499 (715)
T 4h1g_A 470 GQTGSGKTFTMSHPTNGMIPLSLKKIFNDI 499 (715)
T ss_dssp SSTTSSHHHHHHCTTTSHHHHHHHHHHHHH
T ss_pred CCCCCchhhccCCCCCCcHHHHHHHHHHHH
No 384
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=23.35 E-value=20 Score=34.17 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHhcCCCCceeeecccccCCCc
Q psy16994 128 MLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 128 ~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
+|.......-...|-||+.|||||
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKS 34 (195)
T ss_dssp --------CCEEEEEEECTTSCHH
T ss_pred ccccCCCCceEEEEEECCCCCcHH
No 385
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=23.22 E-value=18 Score=34.45 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=0.0
Q ss_pred cCCCCceeeecccccCCCcE
Q psy16994 133 LNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~ 152 (932)
+.+....|.-.|++|||||+
T Consensus 4 ~~~~~~~I~i~G~~GsGKST 23 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKST 23 (203)
T ss_dssp --CCCEEEEEEECTTSCHHH
T ss_pred cccCceEEEEECCCCCCHHH
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.19 E-value=16 Score=33.73 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|..|||||+
T Consensus 4 ~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 4 PIFMVGARGCGMTT 17 (173)
T ss_dssp CEEEESCTTSSHHH
T ss_pred eEEEECCCCCCHHH
No 387
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.18 E-value=2e+02 Score=29.53 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 703 HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND 757 (932)
Q Consensus 703 ~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~e 757 (932)
....+....+..++..++..+......+..|+..+..++.++..++.++..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=23.13 E-value=24 Score=34.78 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHhcCC---CCceeeecccccCCCc
Q psy16994 127 NMLERYLNG---EDALLFSFGTTNSGKT 151 (932)
Q Consensus 127 ~~v~~~~~g---~~~~i~~~G~tgsGKt 151 (932)
+-++.++.| ....++-+|++|+|||
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKT 37 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKT 37 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHH
No 389
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.90 E-value=31 Score=31.83 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcC-CCCceeeecccccCCCc
Q psy16994 123 NIVHNMLERYLN-GEDALLFSFGTTNSGKT 151 (932)
Q Consensus 123 ~~~~~~v~~~~~-g~~~~i~~~G~tgsGKt 151 (932)
..+..++..++. .....|+..|.+|+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKs 32 (183)
T 1moz_A 3 NIFSSMFDKLWGSNKELRILILGLDGAGKT 32 (183)
T ss_dssp HHHHHHHGGGTTCSSCEEEEEEEETTSSHH
T ss_pred hHHHHHHHHhcCCCCccEEEEECCCCCCHH
No 390
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=22.86 E-value=28 Score=36.84 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEe-----------------------------------cCHHHHHHHHHhhhhccccccc
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNV-----------------------------------HSCEEAYRVLRFGKSHLSVAPT 184 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v-----------------------------------~s~~~~~~~l~~g~~~r~~~~t 184 (932)
|...|.+|+|||..+-.+....+ ++..++...+......-.....
T Consensus 34 I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~ 113 (353)
T 2x2e_A 34 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 113 (353)
T ss_dssp EEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCC
Q ss_pred cCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEEEeCCC
Q psy16994 185 ELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDICDLAG 224 (932)
Q Consensus 185 ~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~vDLag 224 (932)
. -++..+.+.+...+.. .|+|||++|
T Consensus 114 g------i~~~~~~~~i~~~~~~--------~l~lvDTPG 139 (353)
T 2x2e_A 114 G------ISPVPINLRVYSPHVL--------NLTLVDLPG 139 (353)
T ss_dssp C------CCCCCEEEEEEETTCC--------SEEEEECCC
T ss_pred C------cccCceEEEEecCCCC--------CcEEEECCC
No 391
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=22.77 E-value=11 Score=34.65 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
++.-.|+.|||||+.+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 392
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=22.77 E-value=20 Score=34.16 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred cCCCCceeeecccccCCCcE
Q psy16994 133 LNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt~ 152 (932)
+......|+-.|.+|||||+
T Consensus 14 m~~~~~~I~l~G~~GsGKST 33 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSS 33 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHH
T ss_pred cCCCCeEEEEECCCCCCHHH
No 393
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=22.75 E-value=2.4e+02 Score=21.07 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTK 762 (932)
Q Consensus 693 ~~~~~l~~~l~~le~~~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~ 762 (932)
.+-.++...+.....++..+..-+..+...+.....--..++.+....+..+..++..+.........++
T Consensus 3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~~~~~~~ 72 (74)
T 2q6q_A 3 QQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDANSTFKEMR 72 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccchhhHhcc
No 394
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.64 E-value=2.5e+02 Score=30.22 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhccCCCCCC
Q psy16994 804 QYRKQLEDQVNSLKAELEQRHNVVRDLQLKLL-QKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGED 882 (932)
Q Consensus 804 ~~~~~l~~e~~~l~~el~~~~~~~~~l~~~l~-~~~~~~~~L~~~l~~~~~~~~~~~~~l~~le~~l~~l~~~~~~~~~~ 882 (932)
.....+..+...+..+++.+....+.+.+++. ...+....|.+++..+.+++..++..+..++.++..+-....+.+.+
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q ss_pred C
Q psy16994 883 T 883 (932)
Q Consensus 883 ~ 883 (932)
.
T Consensus 108 ~ 108 (421)
T 1ses_A 108 G 108 (421)
T ss_dssp T
T ss_pred C
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.63 E-value=16 Score=34.16 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|.+|||||+
T Consensus 4 ~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 4 KAVLVGLPGSGKST 17 (184)
T ss_dssp SEEEECSTTSSHHH
T ss_pred eEEEECCCCCCHHH
No 396
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.60 E-value=9.8 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEEec
Q psy16994 139 LLFSFGTTNSGKTFTIQD 156 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~~G 156 (932)
.++-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
No 397
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=22.52 E-value=39 Score=36.78 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHHHHhcC---------CCCceeeecccccCCCcEE
Q psy16994 112 GPHTTQAELFQNIVHNMLERYLN---------GEDALLFSFGTTNSGKTFT 153 (932)
Q Consensus 112 ~~~~~q~~v~~~~~~~~v~~~~~---------g~~~~i~~~G~tgsGKt~t 153 (932)
....+..+.+-.++.+-+..++. +....|+..|++|+|||+|
T Consensus 66 ~~~~~~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt 116 (443)
T 3dm5_A 66 PAGISKKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTT 116 (443)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHH
No 398
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=22.50 E-value=17 Score=33.77 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-.|++|||||+
T Consensus 7 i~i~G~~GsGKsT 19 (175)
T 1via_A 7 IVFIGFMGSGKST 19 (175)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCCCHHH
No 399
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.31 E-value=2.2e+02 Score=20.30 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754 (932)
Q Consensus 713 ~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l 754 (932)
...+.++..++..+..+...+...+.....++..+..+++.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 400
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=22.25 E-value=1e+03 Score=28.07 Aligned_cols=269 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-ChHHHHHHHHH
Q psy16994 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTEN-KPEEVKYLKSL 564 (932)
Q Consensus 486 i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~l~~~ 564 (932)
+..+......|..........+.........+.............+..=+......+.... .-. ....+..+...
T Consensus 337 ~~~i~~~w~~L~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~~~Wl~~~e~~l~~~~----~g~~dl~~v~~ll~k 412 (863)
T 1sjj_A 337 VSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKD----YETATLSEIKALLKK 412 (863)
T ss_dssp GGGHHHHHHHHHHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT----TTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16994 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYER 644 (932)
Q Consensus 565 l~~~~~~l~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~ 644 (932)
.+.+...+......+..+......+. ..-......+...+..+......+......-+..+......... +..
T Consensus 413 h~~f~~el~~~~~~v~~l~~~~~~L~---~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~----~~~ 485 (863)
T 1sjj_A 413 HEAFESDLAAHQDRVEQIAAIAQELN---ELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLET----IDQ 485 (863)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHH---HTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q psy16994 645 LMSEKENLISQLKADLESNRAESNQ-----SAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY----------- 708 (932)
Q Consensus 645 ~~~~l~~~~~~l~~~l~~~~~~l~~-----~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~le~~----------- 708 (932)
....+......+..=+......+.. -...++.+..+...+...+......+..+..-...+..-
T Consensus 486 l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 565 (863)
T 1sjj_A 486 LYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGT 565 (863)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 709 -------YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ 765 (932)
Q Consensus 709 -------~~~l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l 765 (932)
+..+......+......-...+............-..........+...+......+
T Consensus 566 ~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l 629 (863)
T 1sjj_A 566 NPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEI 629 (863)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=22.18 E-value=21 Score=37.39 Aligned_cols=13 Identities=46% Similarity=0.782 Sum_probs=0.0
Q ss_pred eeeecccccCCCc
Q psy16994 139 LLFSFGTTNSGKT 151 (932)
Q Consensus 139 ~i~~~G~tgsGKt 151 (932)
.|+-.|+||||||
T Consensus 42 lIvI~GPTgsGKT 54 (339)
T 3a8t_A 42 LLVLMGATGTGKS 54 (339)
T ss_dssp EEEEECSTTSSHH
T ss_pred eEEEECCCCCCHH
No 402
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.12 E-value=20 Score=40.30 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCCceeeecccccCCCcE
Q psy16994 135 GEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~ 152 (932)
|....++-||++|+|||+
T Consensus 75 ~~~~~lLL~GppGtGKTt 92 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTT 92 (516)
T ss_dssp TSCSEEEEECSTTSSHHH
T ss_pred CCCcEEEEECCCCCCHHH
No 403
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=21.99 E-value=29 Score=39.20 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
...+..++.|.| ++..++||||||
T Consensus 13 ~~~i~~~~~~~~--~l~~~~tGsGKT 36 (556)
T 4a2p_A 13 IELAQPAINGKN--ALICAPTGSGKT 36 (556)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCHH
T ss_pred HHHHHHHHcCCC--EEEEcCCCChHH
No 404
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=21.99 E-value=15 Score=41.88 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 111 YGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 111 ~~~~~~q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
+.-...|...+..+. .+..++..|+.|||||+++
T Consensus 188 ~~L~~~Q~~Av~~~~----------~~~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 188 KGLSEEQASVLDQLA----------GHRLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp TTCCHHHHHHHHHHT----------TCSEEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHH----------hCCEEEEEcCCCCCHHHHH
No 405
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.85 E-value=22 Score=33.92 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HhcCCCCceeeecccccCCCcE
Q psy16994 131 RYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 131 ~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
.........|+-.|+.|||||+
T Consensus 14 ~~~~~~~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 14 LVPRGSHMRVLLLGPPGAGKGT 35 (201)
T ss_dssp --CCCSCCEEEEECCTTSSHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHH
No 406
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.84 E-value=3.5e+02 Score=22.55 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSR 540 (932)
Q Consensus 486 i~~l~~~l~~l~~~l~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 540 (932)
+..+.+++.....++..+..++..++..+..++.+.+-.-.++..++.-+.....
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=21.81 E-value=12 Score=37.00 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=0.0
Q ss_pred eeeecccccCCCcEEE
Q psy16994 139 LLFSFGTTNSGKTFTI 154 (932)
Q Consensus 139 ~i~~~G~tgsGKt~t~ 154 (932)
++.-.|++|||||+.+
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
No 408
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=21.81 E-value=18 Score=36.30 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|.+|||||+
T Consensus 6 lIvl~G~pGSGKST 19 (260)
T 3a4m_A 6 LIILTGLPGVGKST 19 (260)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEcCCCCCHHH
No 409
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=21.61 E-value=18 Score=38.52 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCC-----------CCCcccchhHHHhhcC
Q psy16994 4 EGTIE-----------QPGIIPRTLNILFNSL 24 (932)
Q Consensus 4 ~Gs~~-----------~~Gi~pr~ldviFnSi 24 (932)
.|++. ++||+||++..||+.|
T Consensus 119 ~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i 150 (373)
T 2wbe_C 119 VGNETAELKSSWEDDSDIGIIPRALSHLFDEL 150 (373)
T ss_dssp TBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHH
T ss_pred ccCccccccccccccCCCcChHHHHHHHHHHH
No 410
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.60 E-value=2.1e+02 Score=19.95 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16994 806 RKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQ 853 (932)
Q Consensus 806 ~~~l~~e~~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~ 853 (932)
+.+|-.+.+.|+.+...++.++.+-...++.++...-+++.-+..++.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
No 411
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.44 E-value=24 Score=36.52 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh-----------------cCCCCceeeecccccCCCcEEE
Q psy16994 118 AELFQNIVHNMLERY-----------------LNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 118 ~~v~~~~~~~~v~~~-----------------~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
..+|..++..+--.+ -.+...+|.-.|++|||||+++
T Consensus 44 ~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 44 AEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH
No 412
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=21.27 E-value=34 Score=34.57 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|...|.+|+|||. +++.-...+...+......-......|.+ ....+.|
T Consensus 6 I~lvG~~n~GKST------------------Lin~l~g~~~~v~~~~g~t~~~~~~~~~~-------------~~~~~~l 54 (274)
T 3i8s_A 6 IGLIGNPNSGKTT------------------LFNQLTGSRQRVGNWAGVTVERKEGQFST-------------TDHQVTL 54 (274)
T ss_dssp EEEEECTTSSHHH------------------HHHHHHTTCEEEEECTTSSSEEEEEEEEC-------------SSCEEEE
T ss_pred EEEECCCCCCHHH------------------HHHHHhCCCcccCCCCCeeEEEEEEEEEe-------------CCCceEE
Q ss_pred EeCCCCcccc
Q psy16994 220 CDLAGAERQK 229 (932)
Q Consensus 220 vDLagse~~~ 229 (932)
||++|.+...
T Consensus 55 iDtpG~~~~~ 64 (274)
T 3i8s_A 55 VDLPGTYSLT 64 (274)
T ss_dssp EECCCCSCSC
T ss_pred EECcCCCccc
No 413
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=21.26 E-value=19 Score=34.32 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+..|++|||||+
T Consensus 31 ~i~l~G~~GsGKST 44 (200)
T 4eun_A 31 HVVVMGVSGSGKTT 44 (200)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=21.26 E-value=25 Score=36.52 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=0.0
Q ss_pred cCCCCceeeecccccCCCc
Q psy16994 133 LNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 133 ~~g~~~~i~~~G~tgsGKt 151 (932)
+.+-...|+-.|+||||||
T Consensus 1 ~~~m~~~i~i~GptGsGKT 19 (323)
T 3crm_A 1 MSSLPPAIFLMGPTAAGKT 19 (323)
T ss_dssp --CCCEEEEEECCTTSCHH
T ss_pred CCCCCcEEEEECCCCCCHH
No 415
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.24 E-value=19 Score=32.96 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|..|||||+
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=21.13 E-value=23 Score=36.56 Aligned_cols=13 Identities=54% Similarity=0.807 Sum_probs=0.0
Q ss_pred eeeecccccCCCc
Q psy16994 139 LLFSFGTTNSGKT 151 (932)
Q Consensus 139 ~i~~~G~tgsGKt 151 (932)
.|+-.|+||||||
T Consensus 12 ~i~i~GptgsGKt 24 (316)
T 3foz_A 12 AIFLMGPTASGKT 24 (316)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
No 417
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=21.12 E-value=18 Score=34.25 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|++|||||+
T Consensus 14 ~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 14 IIFIIGGPGSGKGT 27 (199)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 418
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=21.08 E-value=31 Score=39.33 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
...+..++.|.+..++..++||||||
T Consensus 49 ~~~i~~il~~~~~dvlv~apTGsGKT 74 (579)
T 3sqw_A 49 QKTIKPILSSEDHDVIARAKTGTGKT 74 (579)
T ss_dssp HHHHHHHHCSSSEEEEEECCTTSCHH
T ss_pred HHHHHHHHccCCCeEEEEcCCCcHHH
No 419
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=21.08 E-value=19 Score=34.60 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
++-.|+.|||||+
T Consensus 8 ~l~tG~pGsGKT~ 20 (199)
T 2r2a_A 8 CLITGTPGSGKTL 20 (199)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEEeCCCCCHHH
No 420
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.05 E-value=19 Score=42.87 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
...|..++. +..++..|++|||||+|+
T Consensus 366 ~~Av~~~l~--~~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 366 SNAVSHVLQ--RPLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp HHHHHHHTT--CSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhc--CCCEEEECCCCCCHHHHH
No 421
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=21.04 E-value=84 Score=31.27 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|...|.+|+|||. ++..-...+...+... ...+......-...+ -.+.|
T Consensus 8 I~lvG~~nvGKTs------------------L~n~l~g~~~~~~~~p------g~tv~~~~~~~~~~~-------~~~~l 56 (258)
T 3a1s_A 8 VALAGCPNVGKTS------------------LFNALTGTKQYVANWP------GVTVEKKEGVFTYKG-------YTINL 56 (258)
T ss_dssp EEEECCTTSSHHH------------------HHHHHHTTCEEEEECT------TSCCEEEEEEEEETT-------EEEEE
T ss_pred EEEECCCCCCHHH------------------HHHHHHCCCCcccCCC------CceEEEEEEEEEECC-------eEEEE
Q ss_pred EeCCCCcccc
Q psy16994 220 CDLAGAERQK 229 (932)
Q Consensus 220 vDLagse~~~ 229 (932)
||++|.+...
T Consensus 57 ~DtpG~~~~~ 66 (258)
T 3a1s_A 57 IDLPGTYSLG 66 (258)
T ss_dssp EECCCCSSCC
T ss_pred EECCCcCccC
No 422
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.00 E-value=19 Score=34.83 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-.|++|||||+
T Consensus 3 I~l~G~~GsGKsT 15 (216)
T 3fb4_A 3 IVLMGLPGAGKGT 15 (216)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
No 423
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=20.96 E-value=22 Score=33.35 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCceeeecccccCCCcE
Q psy16994 125 VHNMLERYLNGEDALLFSFGTTNSGKTF 152 (932)
Q Consensus 125 ~~~~v~~~~~g~~~~i~~~G~tgsGKt~ 152 (932)
..++-..........|+-.|..|||||+
T Consensus 1 ~~~~~~~~~~~~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 1 MQALTTYKCIEKGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp -------CCCSCCEEEEEECCTTSSHHH
T ss_pred CcccccccccCCCcEEEEEcCCCCCHHH
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.91 E-value=20 Score=34.27 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|..|||||+
T Consensus 17 ~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 17 VIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 425
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=20.67 E-value=23 Score=36.53 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=0.0
Q ss_pred eeeecccccCCCc
Q psy16994 139 LLFSFGTTNSGKT 151 (932)
Q Consensus 139 ~i~~~G~tgsGKt 151 (932)
.|+-.|+||||||
T Consensus 5 ~i~i~GptgsGKt 17 (322)
T 3exa_A 5 LVAIVGPTAVGKT 17 (322)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCcCCHH
No 426
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=20.59 E-value=19 Score=34.92 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-.|..|||||+
T Consensus 7 I~l~G~~GsGKsT 19 (220)
T 1aky_A 7 MVLIGPPGAGKGT 19 (220)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
No 427
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.46 E-value=45 Score=40.11 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCC-----ceeeecccccCCCcE
Q psy16994 115 TTQAELFQNIVHNMLERYLNGED-----ALLFSFGTTNSGKTF 152 (932)
Q Consensus 115 ~~q~~v~~~~~~~~v~~~~~g~~-----~~i~~~G~tgsGKt~ 152 (932)
..|..+...+..-+........+ +.|+-||++|+|||+
T Consensus 561 iG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~ 603 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE 603 (854)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHH
No 428
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.45 E-value=19 Score=33.98 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|++|||||+
T Consensus 11 ~I~l~G~~GsGKsT 24 (196)
T 2c95_A 11 IIFVVGGPGSGKGT 24 (196)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 429
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.39 E-value=20 Score=35.51 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=0.0
Q ss_pred eeeecccccCCCcE
Q psy16994 139 LLFSFGTTNSGKTF 152 (932)
Q Consensus 139 ~i~~~G~tgsGKt~ 152 (932)
.|+-.|++|||||+
T Consensus 29 ~i~l~G~~GsGKST 42 (246)
T 2bbw_A 29 RAVILGPPGSGKGT 42 (246)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
No 430
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=20.38 E-value=27 Score=36.36 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceeeecccccCCCcEEE
Q psy16994 117 QAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 117 q~~v~~~~~~~~v~~~~~g~~~~i~~~G~tgsGKt~t~ 154 (932)
.......+...++..--.+....|.-.|++|||||+++
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTS 109 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH
No 431
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.25 E-value=1.5e+02 Score=22.51 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16994 814 NSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQ 853 (932)
Q Consensus 814 ~~l~~el~~~~~~~~~l~~~l~~~~~~~~~L~~~l~~~~~ 853 (932)
+.+...+......+.+|+..+......|..|+.++.+.++
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.23 E-value=2.1e+02 Score=19.27 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 730 CEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQE 766 (932)
Q Consensus 730 ~~~l~~~l~~l~~~l~~l~~~l~~l~~el~~l~~~l~ 766 (932)
+.+++....+++....+++..+..+..+-.-+++-+.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
No 433
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=20.22 E-value=19 Score=35.23 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-.|.+|||||+
T Consensus 10 I~l~G~~GsGKsT 22 (227)
T 1zd8_A 10 AVIMGAPGSGKGT 22 (227)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
No 434
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=20.19 E-value=33 Score=40.15 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
...+..++.|.+ ++..++||||||
T Consensus 13 ~~~i~~il~g~~--~ll~~~TGsGKT 36 (699)
T 4gl2_A 13 MEVAQPALEGKN--IIICLPTGCGKT 36 (699)
T ss_dssp HHHHHHHHSSCC--EEECCCTTSCHH
T ss_pred HHHHHHHHhCCC--EEEEcCCCCcHH
No 435
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=20.12 E-value=88 Score=32.09 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred eeecccccCCCcEEEecceEEEecCHHHHHHHHHhhhhccccccccCccCCCCCccEEEEEEEEeCCCCCcceeEEEEEE
Q psy16994 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFDI 219 (932)
Q Consensus 140 i~~~G~tgsGKt~t~~Gl~~~~v~s~~~~~~~l~~g~~~r~~~~t~~n~~ssrsh~i~~i~v~~~~~~~~~~~~~s~l~~ 219 (932)
|+..|.+|+|||. |-....................-.+..+.+ +.. ..+.|
T Consensus 6 I~lvG~~~vGKSS-------------------Li~~l~~~~~~~~~~~~~~Ti~~~~~~~~~---~~~-------~~l~i 56 (307)
T 3r7w_A 6 LLLMGRSGSGKSS-------------------MRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGN-------MTLNL 56 (307)
T ss_dssp EEEECCTTSSHHH-------------------HHHHHHSCCCTGGGGGCCCCCSEEEEEEEE---TTT-------EEEEE
T ss_pred EEEECCCCCCHHH-------------------HHHHHHhCCCCccccCcCCccceEEEEEEe---CCc-------eEEEE
Q ss_pred EeCCCCcc
Q psy16994 220 CDLAGAER 227 (932)
Q Consensus 220 vDLagse~ 227 (932)
+|++|.++
T Consensus 57 ~Dt~G~~~ 64 (307)
T 3r7w_A 57 WDCGGQDV 64 (307)
T ss_dssp EEECCSHH
T ss_pred EECCCcHH
No 436
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=20.10 E-value=21 Score=38.15 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCceeeecccccCCCc
Q psy16994 126 HNMLERYLNGEDALLFSFGTTNSGKT 151 (932)
Q Consensus 126 ~~~v~~~~~g~~~~i~~~G~tgsGKt 151 (932)
...+..++.|.+ ++..++||||||
T Consensus 49 ~~~i~~i~~~~~--~lv~~~TGsGKT 72 (394)
T 1fuu_A 49 QRAIMPIIEGHD--VLAQAQSGTGKT 72 (394)
T ss_dssp HHHHHHHHHTCC--EEECCCSSHHHH
T ss_pred HHHHHHHhCCCC--EEEECCCCChHH
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.08 E-value=25 Score=31.74 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=0.0
Q ss_pred CceeeecccccCCCc
Q psy16994 137 DALLFSFGTTNSGKT 151 (932)
Q Consensus 137 ~~~i~~~G~tgsGKt 151 (932)
.+..+-+|++|||||
T Consensus 23 ~g~~~I~G~NGsGKS 37 (149)
T 1f2t_A 23 EGINLIIGQNGSGKS 37 (149)
T ss_dssp SEEEEEECCTTSSHH
T ss_pred CCeEEEECCCCCCHH
No 438
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=20.06 E-value=15 Score=37.92 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=0.0
Q ss_pred CCCceeeecccccCCCcEEE
Q psy16994 135 GEDALLFSFGTTNSGKTFTI 154 (932)
Q Consensus 135 g~~~~i~~~G~tgsGKt~t~ 154 (932)
+....|+-.|++|+|||+|+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHH
No 439
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=20.05 E-value=20 Score=34.62 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=0.0
Q ss_pred eeecccccCCCcE
Q psy16994 140 LFSFGTTNSGKTF 152 (932)
Q Consensus 140 i~~~G~tgsGKt~ 152 (932)
|+-.|++|||||+
T Consensus 3 I~l~G~~GsGKsT 15 (216)
T 3dl0_A 3 LVLMGLPGAGKGT 15 (216)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
No 440
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.03 E-value=2e+02 Score=19.07 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16994 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEN 756 (932)
Q Consensus 712 l~~~l~~l~~~l~~l~~~~~~l~~~l~~l~~~l~~l~~~l~~l~~ 756 (932)
++.++..+...--++...-..+++-+..+..++..++.++...+.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevasheq 52 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASHEQ 52 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhccC
No 441
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=20.01 E-value=59 Score=35.37 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCC----------CceeeecccccCCCcEE
Q psy16994 113 PHTTQAELFQNIVHNMLERYLNGE----------DALLFSFGTTNSGKTFT 153 (932)
Q Consensus 113 ~~~~q~~v~~~~~~~~v~~~~~g~----------~~~i~~~G~tgsGKt~t 153 (932)
...+....+..++...+..++.+. ...|+..|++|+|||++
T Consensus 65 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 65 KGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTT 115 (432)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHH
T ss_pred ccCChHHHHHHHHHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHH
Done!