RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16994
(932 letters)
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 170 bits (434), Expect = 6e-47
Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVD- 205
+ ++ LT V V S E+A +L+ G + + A T +N RSSRSH +F+I + + +
Sbjct: 159 DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNT 218
Query: 206 PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 265
I S ++ DLAG+ER K+ GDRL+EA+ IN SL L + L
Sbjct: 219 TNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ--- 275
Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
KKK IP+RDSKLT++ Q SL G S T+ MI N++ S +ET+ L+ +S A+
Sbjct: 276 --KKKHIPYRDSKLTRLLQDSLGGNSKTL-MIANISPSSENYDETLSTLRFASRAK 328
Score = 63.0 bits (154), Expect = 2e-10
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
E+ + V D K++ P KD + + + + F +++ P++TQ ++++ ++E L
Sbjct: 20 ESCITVDDNKTVTLTPPKDGRKAGPKS---FTFDHVFDPNSTQEDVYETTAKPLVESVLE 76
Query: 135 GEDALLFSFGTTNSGKTFTI 154
G + +F++G T SGKT+T+
Sbjct: 77 GYNGTIFAYGQTGSGKTYTM 96
Score = 29.9 bits (68), Expect = 6.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 4 EGTIEQPGIIPRTLNILFNSL 24
G+ + PGIIPR L LFN +
Sbjct: 97 FGSPKDPGIIPRALEDLFNLI 117
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 165 bits (420), Expect = 5e-45
Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 9/175 (5%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEEL-- 211
+ LT V V S EEA V + G+ + VA T+LN SSRSH VF+IKLV+ S+
Sbjct: 173 VAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVD 232
Query: 212 -----IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
I +S + DLAG+ER R +G+RL+EA IN+SL L +C VLREN L
Sbjct: 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQ-LSG 291
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
K++P+RDSKLT +FQ G +MIVNVN + +ET+ V+K S++A+
Sbjct: 292 STNKMVPYRDSKLTHLFQNYFDG-EGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345
Score = 73.6 bits (181), Expect = 7e-14
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 75 ENVLEVLDQKSIMFKP------MKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNM 128
E +EV++ +I P K + + FS ++GP+TTQ E F+ +
Sbjct: 22 EGCIEVINSTTIQLHPPKGSAARKSERNGGQKE-TKFSFSKVFGPNTTQKEFFEGTALPL 80
Query: 129 LERYLNGEDALLFSFGTTNSGKTFTIQ 155
++ L G+++LLF++G TNSGKT+T+Q
Sbjct: 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQ 107
Score = 40.8 bits (96), Expect = 0.002
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 5 GTIEQPGIIPRTLNILFNSLGPY 27
G+ GI+PR+L+++FNS+G Y
Sbjct: 108 GSPGDGGILPRSLDVIFNSIGGY 130
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 161 bits (411), Expect = 5e-44
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 8/172 (4%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
++ LT V V S EE +L G + +VA T +N SSRSH +F+I + + + ++ +
Sbjct: 162 YVKGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSV 221
Query: 213 MMSSFDICDLAGAERQKRA-HTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
++ DLAG+ER + G RL+EA IN SL L N L EN +
Sbjct: 222 KTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALAEN------QSSH 275
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
IP+RDSKLT++ Q SL G S T+ MI N++ S + EET+ L+ +S A+++
Sbjct: 276 IPYRDSKLTRLLQDSLGGNSKTL-MIANISPSDSNYEETLSTLRFASRAKNI 326
Score = 53.4 bits (129), Expect = 2e-07
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F ++ P TQ +++ ++E L G + +F++G T SGKT+T++
Sbjct: 42 FTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTME 92
Score = 31.0 bits (71), Expect = 2.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 1 MGAEGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML 46
M + E+PGIIPR L LF + ++ +++ VS L
Sbjct: 91 MEGDPPEEEPGIIPRALEDLFERIEERKERKW-----SFSVRVSYL 131
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 159 bits (404), Expect = 6e-43
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KVDPGSEE 210
++ LT ++V S EE Y +L G + +VA T++N SSRSH VF+I + + S
Sbjct: 163 YVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGS 222
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
S ++ DLAG+ER K+ GDRL+EA IN SL L N L +++ K +
Sbjct: 223 GK-ASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHS-----KSR 276
Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328
IP+RDSKLT++ Q SL G S T+ MI NV+ S + EET+ L+ +S A+++
Sbjct: 277 HIPYRDSKLTRLLQDSLGGNSKTL-MIANVSPSSSNLEETLSTLRFASRAKEIKNKPI 333
Score = 46.8 bits (112), Expect = 3e-05
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F ++ +Q ++F+ +++ L G +A +F++G T SGKT+T+
Sbjct: 48 FTFDKVFDATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTM 97
Score = 31.0 bits (71), Expect = 2.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 4 EGTIEQPGIIPRTLNILFNSL 24
GT + PGIIPR L LF +
Sbjct: 98 IGTPDSPGIIPRALKDLFEKI 118
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 135 bits (342), Expect = 9e-35
Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 10/168 (5%)
Query: 148 SGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG 207
G+T + +LT V V S EE R+L G + SVA T +N SSRSH VF +K+ +
Sbjct: 161 KGET-YVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ 219
Query: 208 SEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 267
+ E ++ DLAG+ER K++ +GDRL+EA+ IN SL L + LR
Sbjct: 220 TGE-QTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS------- 271
Query: 268 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
K +P+R+SKLT + Q SL G S T+ M VN++ + ET+ L+
Sbjct: 272 KDSHVPYRNSKLTYLLQDSLGGNSKTL-MFVNISPLESNLSETLCSLR 318
Score = 37.2 bits (87), Expect = 0.031
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 96 CSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
T + F ++ P +Q ++F+ + +++ L+G + +F++G T SGKT+T++
Sbjct: 38 SKGTGKKKSFSFDRVFDPDASQEDVFEEVSP-LVQSALDGYNVCIFAYGQTGSGKTYTME 96
Score = 34.1 bits (79), Expect = 0.34
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 4 EGTIEQPGIIPRTLNILFNSLGPYLDKS 31
EG E PGIIPR L LFN+ +K
Sbjct: 96 EGPPENPGIIPRALEQLFNTAEELKEKG 123
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 122 bits (309), Expect = 3e-30
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 5/179 (2%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI--KLVKVDPGSEEL 211
++DL+ V V S E+ +L G + A T +N SSRSH VF+I K+D ++
Sbjct: 177 VEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLT 236
Query: 212 IMMSS-FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLREN-NGLKADKK 269
S + DLAG+ER GDRL+E IN SL L + + L +N + K
Sbjct: 237 TEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKS 296
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAK 328
IP+RDS LT + + +L G S T MI ++ + EET+ L+ + A+ ++ VA
Sbjct: 297 SFIPYRDSVLTWLLKENLGGNSKTA-MIATISPADINYEETLSTLRYADRAKKIVNVAV 354
Score = 36.5 bits (85), Expect = 0.058
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 112 GPH-TTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
PH +Q ++F+++ +L+ G + LF++G T SGK++T+
Sbjct: 63 DPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTM 106
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 122 bits (307), Expect = 4e-30
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 7/172 (4%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSE--E 210
+ LT S EE +L G + + PTE N SSRSH V I + + D + +
Sbjct: 171 VVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQ 230
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
+ + + DLAG+ER + G RL+E IN SL L C N L + K K
Sbjct: 231 QVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK----KNK 286
Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARD 322
IP+RDSKLT++ + SL G TV MI N++ S ++ EET LK ++ A++
Sbjct: 287 HIPYRDSKLTRLLKDSLGGNCKTV-MIANISPSSSHYEETHNTLKYANRAKN 337
Score = 48.0 bits (115), Expect = 1e-05
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 13/99 (13%)
Query: 65 FDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNL---------YRFSNIYGPHT 115
F++ V++V+D + ++F P K NL Y F ++ +
Sbjct: 11 FNEKEKQEGTRRVVKVVDDRMLVFDP----KDEEDAFRNLRARRNKELKYSFDRVFDETS 66
Query: 116 TQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
TQ E+++N +++ LNG +A +F++G T +GKT T+
Sbjct: 67 TQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTM 105
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 119 bits (301), Expect = 3e-29
Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KVDPGSEE 210
I LT V V+S +E L G + A T +N +SSRSH +F+I L + +
Sbjct: 166 IIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP 225
Query: 211 LIMM-------SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 263
+ S F DLAG+ER K+ +GDRL+E +INS L L + L G
Sbjct: 226 MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISAL----G 281
Query: 264 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
++ K +P+RDSKLT++ Q SL G S T+ MI V+ + + EET+ LK ++ AR
Sbjct: 282 DESKKGSHVPYRDSKLTRLLQDSLGGNSHTL-MIACVSPADSNFEETLNTLKYANRAR 338
Score = 46.1 bits (110), Expect = 4e-05
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F ++ P T+Q E++ V +++ G +A + ++G T SGKT+T+
Sbjct: 42 FTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTM 91
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 118 bits (298), Expect = 8e-29
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 10/174 (5%)
Query: 143 FGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV 202
F TN+ IQ L + V++ E ++L G + A T +N +SSRSH +FSI +
Sbjct: 169 FDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIH 228
Query: 203 KV--DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRE 260
EEL+ + ++ DLAG+E R+ R REA IN SL L R N L
Sbjct: 229 IKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINAL-- 286
Query: 261 NNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVL 314
+K IP+R+SKLT++ Q SL G + T +I ++ + EET+ L
Sbjct: 287 -----VEKSPHIPYRESKLTRLLQDSLGGRTKTS-IIATISPASINLEETLSTL 334
Score = 49.2 bits (118), Expect = 5e-06
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153
Y F ++GP Q E++ +V +L+ L G + +F++G T +GKT+T
Sbjct: 50 YTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYT 98
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 114 bits (286), Expect = 2e-27
Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 9/172 (5%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPG--SEEL 211
++DL+ V + EE +++ G + SV T +N SSRSH +F+I + + G E
Sbjct: 169 VKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENH 228
Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
I + ++ DLAG+ERQ + +GDRL+EA IN SL L NV+ + L K
Sbjct: 229 IRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALG---NVI---SALVDGKSTH 282
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
IP+RDSKLT++ Q SL G S TV M N+ + +ET+ L+ ++ A+++
Sbjct: 283 IPYRDSKLTRLLQDSLGGNSKTV-MCANIGPADYNYDETLSTLRYANRAKNI 333
Score = 43.5 bits (103), Expect = 4e-04
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F +Y P++TQ +++ +++ L G + +F++G T +GKTFT++
Sbjct: 50 FTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTME 100
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 113 bits (284), Expect = 4e-27
Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
++ LT V S EE V+ GKS+ +VA T +N SSRSH +F I L + + +
Sbjct: 164 VKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGS-KK 222
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
+ DLAG+E+ + G L EA+ IN SL L N L + K IP
Sbjct: 223 RGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDG------KSTHIP 276
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
+RDSKLT+I Q SL G S T +I+ + S ET+ L+
Sbjct: 277 YRDSKLTRILQDSLGGNSRTT-LIICCSPSSYNESETLSTLR 317
Score = 44.2 bits (105), Expect = 2e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFT 153
+ F ++ P+TTQ +++ + +++ LNG + +F++G T SGKT+T
Sbjct: 45 FSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYT 93
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 112 bits (281), Expect = 8e-27
Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KVDPGSEE 210
+ LT V S E +++ G+ + V T+ N RSSRSH +F + + +
Sbjct: 156 VVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESG 215
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
+ +S+ ++ DLAG+ER + +G+R +E IN SL L + L E
Sbjct: 216 TVRVSTLNLIDLAGSERASQ-TGAGERRKEGSFINKSLLTLGTVISKLSEG-----KNSG 269
Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDL 323
IP+RDSKLT+I Q SLSG ++ +I ++ + ++ EET+ LK +S A+ +
Sbjct: 270 HIPYRDSKLTRILQPSLSG-NARTAIICTISPASSHVEETLNTLKFASRAKKV 321
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 105 bits (263), Expect = 2e-24
Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KV 204
+S + ++ L+ + + EEA +L G+++ ++A T +N SSRSHC+F+I L
Sbjct: 166 DSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSR 225
Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
+ GSE + +S ++ DLAG+ER + SG L+EA+ IN SL L + N L E
Sbjct: 226 EAGSEV-VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA-- 282
Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
+ +P+R+SKLT + + SL G TV M+ + P+ +ET+ L+ +
Sbjct: 283 ----RTHVPYRNSKLTHVLRDSLGGNCKTV-MLATIWVEPSNLDETLSTLRFAQRVA 334
Score = 39.4 bits (92), Expect = 0.006
Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
++F ++ +Q E+++ + +++ L+G + +F++G T +GKTFT+
Sbjct: 50 FKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTM 98
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 104 bits (260), Expect = 5e-24
Identities = 65/177 (36%), Positives = 96/177 (54%), Gaps = 7/177 (3%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+ K +++LT V S E+ Y+VL G S+ VA T +N SSRSH VF+ + +
Sbjct: 164 DIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEK 223
Query: 207 GSEEL-IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLREN-NGL 264
+ I S ++ DLAG+ERQK G RL+EA+ IN SL L L + +G
Sbjct: 224 KASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG- 282
Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
K++ +P+RDSKLT + + SL G + T +I NV+ S ET+ LK + A+
Sbjct: 283 ---KQRHVPYRDSKLTFLLRDSLGGNAKTT-IIANVSPSSKCFGETLSTLKFAQRAK 335
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ F ++ +T Q ++FQ++ ++E L+G + +F++G T SGKT+T+
Sbjct: 43 FTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTM 92
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 99.5 bits (248), Expect = 8e-24
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 123 NIVHNMLERYLNGEDALLFSFGTTNSGKTFTI---QDLTYVNVHSCEEAYRVLRFGKSHL 179
V +L+ L+G + +F++G T SGKT+T+ ++ + + + ++ G ++
Sbjct: 10 RDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGNANR 69
Query: 180 SVAPTELNHRSSRSHCVFSIKLV--KVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDR 237
+ A T +N SSRSH VF I + E + ++ DLAG+ER + G R
Sbjct: 70 TTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSR 129
Query: 238 LREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMI 297
L E IN SL L + L A++ +P+R+SKLT++ Q SL G S T+ M+
Sbjct: 130 LTETANINKSLSTLGNVISAL-------AERDSHVPYRESKLTRLLQDSLGGNSRTL-MV 181
Query: 298 VNVNASP 304
+ SP
Sbjct: 182 ACI--SP 186
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 99.5 bits (248), Expect = 1e-22
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
G I LT + S E + +VA T+LN SSRSH V +KV +
Sbjct: 159 GNIL-IVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVL---RIKVTQPA 214
Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
+ + ++ DLAG+E +R G RL+E+ INSSL VL++ + L N GL
Sbjct: 215 SNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDAL--NKGLPR-- 270
Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
IP+R+SKLT++ Q SL G S + M+ N+ ++ ++T+ L +S ++
Sbjct: 271 ---IPYRESKLTRLLQDSLGGGSRCI-MVANIAPERSFYQDTLSTLNFASRSK 319
Score = 50.5 bits (121), Expect = 2e-06
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y+F YG TQ ++F V ++ L+G++A +F++G+T +GKT T+
Sbjct: 49 YQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTML 99
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 99.8 bits (249), Expect = 1e-21
Identities = 93/400 (23%), Positives = 149/400 (37%), Gaps = 30/400 (7%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
+ LT +V S EE +LR G+ + + A TE+N SSRSH +F I+L + S
Sbjct: 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSE 232
Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
S + DLAG+ER R G RL+E +IN SL L N L + I
Sbjct: 233 T-SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGH-----I 286
Query: 273 PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHL 332
P+R+SKLT++ Q SL G +T +I ++ S EET+ LK +S A+ + +
Sbjct: 287 PYRESKLTRLLQDSLGGNCNTR-VICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS 345
Query: 333 PPPPRK--KTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLA 390
R+ + +F + R+ + + ++ F ET L
Sbjct: 346 SDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDL 405
Query: 391 EFEGFDKKEFEY------QIREEYREVQ-------EDFRKMFEEQQTDWENNVKKLREQH 437
+ FE + + +Q EE K + +H
Sbjct: 406 IMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRH 465
Query: 438 E-EDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESA-IEAQHKLKIQNLKQELSE 495
+ L + K + + + + S H + +ELS
Sbjct: 466 DLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELSL 525
Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV 535
+ L+ +S + EL RE + L NK L
Sbjct: 526 NQ---VDLAGSERKVSQSVGELLRETQSL---NKSLSSLG 559
Score = 45.9 bits (109), Expect = 9e-05
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 103 NLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQD 156
Y F ++GP TQ ++++ + +++ L G + +F++G T SGKT+T+
Sbjct: 56 GTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG 109
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 91.9 bits (229), Expect = 5e-20
Identities = 52/170 (30%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+ I LT V S +E ++ G S + T N +SSRSH + I L
Sbjct: 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL 218
Query: 207 GSEELIMMSSFDICDLAGAER-QKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 265
+ DLAG+ER + +E IN SL L C L
Sbjct: 219 NKL----LGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRAL------- 267
Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
A K +PFR SKLTQ+ + S G S TV MI ++ S + E T+ L+
Sbjct: 268 ASNKAHVPFRGSKLTQVLRDSFIGNSKTV-MIATISPSASSCEHTLNTLR 316
Score = 36.5 bits (85), Expect = 0.062
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 103 NLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTI 154
+ +RF ++ T E++++ V ++ G A F++G T SGKT+T+
Sbjct: 51 HTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTM 102
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 91.3 bits (227), Expect = 1e-18
Identities = 78/301 (25%), Positives = 145/301 (48%), Gaps = 14/301 (4%)
Query: 473 LNESAIEAQHKLKIQNLKQELSELEA-----KYKSLSEEHEDMSGKLKELTRENRDLVTK 527
L + +A+ + Q LK EL ELE K K L +E E++ +L L E +L +
Sbjct: 202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEE 261
Query: 528 NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
+E E ++ +L +EE+ EE++ L+ L E KEE +E EI LR +E
Sbjct: 262 LEEAEKEIEELKSELEELR---------EELEELQEELLELKEEIEELEGEISLLRERLE 312
Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
+L E L R EL+ ++E + + EEL++ L +E +E L+
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372
Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
E E L L+ +L AE + ++ + L++EI++L L + + DLK ++ + E
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
++ + + +++ EL+ + EEL ++ +LE + ++ +E + S + ++
Sbjct: 433 ELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492
Query: 768 L 768
L
Sbjct: 493 L 493
Score = 73.6 bits (181), Expect = 4e-13
Identities = 77/359 (21%), Positives = 166/359 (46%), Gaps = 19/359 (5%)
Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ 462
++ EE E++ K EE+ +N ++ L + EE + + + E L +
Sbjct: 671 ELEEELAELEAQLEK-LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729
Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENR 522
+ + + + + +++ L++ L ELE + +SL E + +++EL + +
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789
Query: 523 DLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL 582
L + +ELE ++ + RR++ +ER ++ + E L+ ++E +EE +E ++++L
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRE--RLEQEIEELEEEIEELEEKLDEL 847
Query: 583 RSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVY 642
E+E+L +E L ELE E E+ + + + EEL+E+L +E++ E
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE----- 902
Query: 643 ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKI 702
L E E L +L+ + E+ L++E ++ ++++ I L+ +I
Sbjct: 903 --LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE--IERLEEEI 958
Query: 703 HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERST 761
E+ + E+ ELK++ E+L + KL L I+ ++ ++R
Sbjct: 959 EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL-------LEVIEELDKEKRER 1010
Score = 69.7 bits (171), Expect = 6e-12
Identities = 69/309 (22%), Positives = 137/309 (44%), Gaps = 19/309 (6%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKM------FEEQQTDWENNVKKL 433
+R LE L + + ++ ++ EE ++E+ ++ E++ + ++ +++L
Sbjct: 220 AELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL 279
Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQEL 493
RE+ EE E + + E + ++ ++ E+E + K KI+ LK+EL
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339
Query: 494 SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTEN 553
E E + L + ++ +EL + L +ELE L R E E A+
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSAL---LEELEELFEAL--REELAELEAELAE 394
Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
E++ LK ++ +E + + +E L+ E+++L E L EL ELE+
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE---- 450
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
+ EEL+++L +E + E +RL E +L ++L LE+ + S
Sbjct: 451 ---LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR-LEAEQRASQGVRAV 506
Query: 674 EQALQKEIK 682
+AL+ +
Sbjct: 507 LEALESGLP 515
Score = 66.3 bits (162), Expect = 6e-11
Identities = 66/314 (21%), Positives = 138/314 (43%), Gaps = 32/314 (10%)
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ-RDYLIAVKTDGAEE 623
L+ +E + +E+L ++EKL + R EL+ EL + L+ K +
Sbjct: 181 LERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELRELELALLLAKLKELRK 239
Query: 624 LQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKN 683
E+L+ ++ +EE + + E E I +LK++LE R E + + L++EI+
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
Query: 684 LGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEAD 743
L + + + +L+ ++ + E+ +KE + ++++ E +T EEL Q + +LE
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE- 358
Query: 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPS 803
+ +E + E+L + + L ++ ELAE
Sbjct: 359 ------AKEELEEKLSALLEELEELFEALREELAELEAELAE------------------ 394
Query: 804 QYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLK 863
+ +++ LK E+E + L +L E + L+A++E+ Q + ++ L+
Sbjct: 395 -----IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449
Query: 864 GLENQMAKINIDRS 877
LE Q+ ++
Sbjct: 450 ELEEQLEELRDRLK 463
Score = 65.5 bits (160), Expect = 1e-10
Identities = 60/304 (19%), Positives = 134/304 (44%), Gaps = 15/304 (4%)
Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE---YELEQRDYLIAVKT 618
K K E KE E+ +L +++EKL EE + L LE EL ++ + +
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
+ + L+ + Q E + E E + +L+ LE E L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
+EI+ L + + +L+ ++ + E+ ++ + ++ E+ L+ + EEL +++
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY---EDRLKAVQDELAEMKCAQLKPSL 795
+LE ++ +E + K E+L ED LK +++E E++ +L+ L
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE-EELR-EL 896
Query: 796 EASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQ 855
E+ +L++++ L+ LE+ + L+++L + E + +++ ++
Sbjct: 897 ESE-------LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949
Query: 856 QQQR 859
+ +R
Sbjct: 950 EIER 953
Score = 65.1 bits (159), Expect = 1e-10
Identities = 111/515 (21%), Positives = 218/515 (42%), Gaps = 37/515 (7%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
E + LE L E + +E E +I EE + E+ R+ EE Q + +K+ E+ E
Sbjct: 246 EELSRLEEELEELQEE-LEEAEKEI-EELKSELEELREELEELQEEL-LELKEEIEELEG 302
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
++ R E L L + ++ +E + + + + L +EL +L A+
Sbjct: 303 EISLLR-------ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355
Query: 500 YKSLSEEHEDM-SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-----GAQTEN 553
+ EE E+ S L+EL L + ELE ++A++ +EE++R + E
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415
Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
E ++ LK L E + E +E TE+E+L E+E+L E+ L R ELE EL +
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
+ L+ +LD +E + + V L + + L E + +
Sbjct: 476 LQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEK----Y 531
Query: 674 EQALQKEIKN-LGSLLVDKDKTIGDLKAKIHKYEKYYAV------MKEDRKTKEKDIAEL 726
E AL+ + N L +++V+ ++ + + + A +K R K
Sbjct: 532 ETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGF 591
Query: 727 KTKCEELTQQVTKLEADCQSYLNTI---KNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
+L K E + L ++E R + + K R+ + +L
Sbjct: 592 LGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKY------RIVTLDGDL 645
Query: 784 AEMKCAQLKPSLEASAATPSQYR-KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMIN 842
E + S ++ + K+LE+++ L+A+LE+ ++ L+ +L +++
Sbjct: 646 VEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE 705
Query: 843 NLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
L+ Q+E+ ++Q ++ + L LE ++ ++
Sbjct: 706 ELRRQLEELERQLEELKRELAALEEELEQLQSRLE 740
Score = 63.6 bits (155), Expect = 4e-10
Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 24/228 (10%)
Query: 385 LEARLAEFEGFDKKEFEY--QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLE 442
L+ + E E + E ++ EE E + E + E ++L ++ EE LE
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDA-LERELESLEQRRERLEQEIEE-LE 834
Query: 443 RQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
+ + + +++ L ++ + E + E L E + + + L+ EL ELE + +
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEE------LEAEKEELEDELKELEEEKEE 888
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP------- 555
L EE ++ +L EL E L + +ELE K+ +L + E+E + E +
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948
Query: 556 EEVKYLKSLLDE-------AKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
E++ L+ ++ A EE++E E+L+S+ E L E + L
Sbjct: 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996
Score = 47.8 bits (114), Expect = 3e-05
Identities = 36/212 (16%), Positives = 100/212 (47%), Gaps = 13/212 (6%)
Query: 663 NRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKD 722
N+ S + + L++E+ L + L ++ + LK ++ E ++ + E+
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717
Query: 723 IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDE 782
+ ELK + L +++ +L++ + ++ +E + + E+L E+ L+++++
Sbjct: 718 LEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL----EEELESLEEA 773
Query: 783 LAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMIN 842
LA++K + R+ L++++ L+ ELE+ + L+ +L +
Sbjct: 774 LAKLKEEI---------EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824
Query: 843 NLKAQMEKSQQQQQQQRSPLKGLENQMAKINI 874
L+ ++E+ +++ ++ L LE ++ ++
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEK 856
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 78.4 bits (193), Expect = 1e-14
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL---VKVDPGSEE 210
+++LT V + ++ ++L G S+ T +N SSRSH VF+ + K
Sbjct: 265 VENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLS 324
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
S ++ DLAG+ERQK +GDRL+EA IN SL L N+L E + + K++
Sbjct: 325 SFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS--QTGKQR 382
Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLKISSVAR 321
IP+RDS+LT + Q SL G ++ + M+ ++ S + ET L+ + A+
Sbjct: 383 HIPYRDSRLTFLLQESLGG-NAKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Score = 38.4 bits (89), Expect = 0.020
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 92 KDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKT 151
K S+T + F +I P +TQ ++FQ + ++E L G ++ +F++G T SGKT
Sbjct: 121 KMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKT 180
Query: 152 FTI 154
+T+
Sbjct: 181 YTM 183
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 76.7 bits (189), Expect = 4e-14
Identities = 113/486 (23%), Positives = 209/486 (43%), Gaps = 52/486 (10%)
Query: 385 LEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQ 444
LE E E +++ + E E + K EE+ E ++KL + EE E +
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352
Query: 445 RKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLS 504
+ K E L L ++ ++ E E Q + IQ LK+EL+EL A + +
Sbjct: 353 NELAKLLEERLKEL---EERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ 409
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK---------P 555
EE E++ +L+EL RE +L + K+LE ++ QL + + A K
Sbjct: 410 EELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPE 469
Query: 556 EEVKYLKSLLDEAKEEFKEQ---TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDY 612
E K L L + EE +E+ E +LR E+E+L +E R L EL E
Sbjct: 470 EHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKE 529
Query: 613 LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAH 672
+ K + E L E+L+ ++ K Q + L + + + E+ + +LK LE R +
Sbjct: 530 ELEEKLEKLENLLEELEELKEKLQLQQL--KEELRQLEDRLQELKELLEELRLLRTRKE- 586
Query: 673 DEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
+ + L++ +K L L + ++ + L+ + E A EL+ EE
Sbjct: 587 ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA------------ENELEEAEEE 634
Query: 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK 792
L ++ KL + E + + + +EK+ ++ + + +Q E + +
Sbjct: 635 LESELEKLNL-------QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKL 687
Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852
LE QLE+++ L+ ELE + ++ Q E + + KA++E+ +
Sbjct: 688 EELE-----------QLEEELEQLREELE----ELLKKLGEIEQLIEELESRKAELEELK 732
Query: 853 QQQQQQ 858
++ ++
Sbjct: 733 KELEKL 738
Score = 73.3 bits (180), Expect = 4e-13
Identities = 105/506 (20%), Positives = 219/506 (43%), Gaps = 48/506 (9%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
E L+++ E + + F + E+ E+ ++ K + + + E + +L E E+
Sbjct: 144 EFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIED 203
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAI-EAQHKLKIQNLKQELSELEA 498
LE E+E + E Q + + + L+QE+ LE
Sbjct: 204 LLEAL------------------------EEELKELKKLEEIQEEQEEEELEQEIEALEE 239
Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT-ENKPEE 557
+ L EE E + L + K E ++ +L R +EE+E + E E
Sbjct: 240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELERE 299
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
++ L+ L+ + +E +E+L+S E+L + L +ELE E+++ L +
Sbjct: 300 IEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLL 359
Query: 618 TDGAEELQEKLDYMEN---KFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
+ +EL+E+L+ +E K E E + E + +++L A LE + E + +
Sbjct: 360 EERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKEL 419
Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM-------KEDRKTKEKDIAELK 727
+ L++E++ L + ++ I L++K + +E + EK++ EL
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479
Query: 728 TKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDR-------LKAVQ 780
E ++ E + I+ +E + R + +LL++ E L+ ++
Sbjct: 480 ELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLE 539
Query: 781 DELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEM 840
+ L E++ + K L+ + +QLED++ LK EL + ++R + +L + E
Sbjct: 540 NLLEELEELKEKLQLQ----QLKEELRQLEDRLQELK-ELLEELRLLRTRKEELEELRER 594
Query: 841 INNLKAQMEKSQQQQQQQRSPLKGLE 866
+ LK ++++ +++ Q L+ LE
Sbjct: 595 LKELKKKLKELEERLSQLEELLQSLE 620
Score = 43.6 bits (103), Expect = 5e-04
Identities = 63/322 (19%), Positives = 121/322 (37%), Gaps = 14/322 (4%)
Query: 382 IRLLEARLAEFEGFDKKEFEYQ-IREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEED 440
+ LE L+ + + E + + +E RE++E+ ++ E ++ E +KL +
Sbjct: 483 LEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLL 542
Query: 441 LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKY 500
E + K Q++ L ++ + E L E + K +++ L++ L EL+ K
Sbjct: 543 EELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKL 602
Query: 501 KSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKY 560
K L E + L+ +L ELE E+E+ E ++
Sbjct: 603 KELEERLSQLEELLQS-----LELSEAENELE---EAEEELESELEKLNLQAELEELLQA 654
Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG 620
L+E EE + + Q E+L E+ L ELE E+ + L+ K
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLK-KLGE 713
Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
E+L E+L + E ++ + + E + L+ E ++ L +
Sbjct: 714 IEQLIEEL----ESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQI 769
Query: 681 IKNLGSLLVDKDKTIGDLKAKI 702
+L DL+
Sbjct: 770 EAEANEILSKLSLNRYDLRRLT 791
Score = 42.1 bits (99), Expect = 0.002
Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 13/299 (4%)
Query: 379 YETIRLLEARLAEFE-GFDKKEFEYQIREEY-REVQEDFRKMFEEQQTDWENNVKKLREQ 436
E I LE L E E + + +E E E + EE + E + ++
Sbjct: 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE 559
Query: 437 HEEDLERQRKFYKTQIETLMTLVKNQQ-AEDDSEDETLNESAIE--AQHKLKIQNLKQEL 493
LE + + K +E L L ++ E+ E + ++ + +++ L Q L
Sbjct: 560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619
Query: 494 SELEAKY--KSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV----AQLSRRVEEMER 547
EA+ + EE E KL L +ELE KV A++ R ++ +E
Sbjct: 620 ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIEN 679
Query: 548 GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607
Q E K EE++ L+ L++ +EE +E ++ ++ +E+L + L ELE
Sbjct: 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739
Query: 608 EQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL--MSEKENLISQLKADLESNR 664
+ + L ++ + Q E+ E L +S + +L + N
Sbjct: 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNG 798
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 75.1 bits (185), Expect = 1e-13
Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 9/278 (3%)
Query: 382 IRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDL 441
+ LL RL E ++ E + +E E E+ +E + E ++ E EE
Sbjct: 227 LALLVLRLEELR--EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284
Query: 442 ERQRKFY--KTQIETL-MTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEA 498
E Q++ Y +I L ++ + E + A + + K+ L +EL+ELE
Sbjct: 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV 558
K + L EE E + +L+EL E +L ++ +ELE ++ L +V ++E + N E+
Sbjct: 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN--EI 402
Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
+ L++ L+ ++ + EIE+L ++E+ E + L ELE ELE+ +
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLE 460
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQL 656
+ EEL+E+L+ E +L + ++L
Sbjct: 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
Score = 72.0 bits (177), Expect = 1e-12
Identities = 78/354 (22%), Positives = 151/354 (42%), Gaps = 56/354 (15%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV----AQLSR 540
+I+ L++++ ELE K L + ++ +L+EL E L + +EL ++ L+R
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
Query: 541 RVEEMERGAQT--------ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
E+E+ + E++ L+ L+EA+EE E EIE+L +++E+L EE
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
Query: 593 RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
+ L EL EL + A + E L+ ++ ER + + E
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAAT-----------ERRLEDLEEQ 846
Query: 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
I +L D+ES AE + + L+ E++ +LL ++ L + E+ +
Sbjct: 847 IEELSEDIESLAAEIEELEELIEELESELE---ALLNERASLEEALALLRSELEE----L 899
Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
E+ + E +EL+ + EEL +++ +LE + I N QE+L + Y
Sbjct: 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN----------LQERLSEEY 949
Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV 826
L+ L+ +E + ++ L+ ++++ V
Sbjct: 950 SLTLEEA---------EALENKIEDDEE-------EARRRLKRLENKIKELGPV 987
Score = 71.6 bits (176), Expect = 1e-12
Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 31/311 (9%)
Query: 405 REEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE-------------DLERQRKFYKTQ 451
R E E++E ++ EE+ + E + +LR++ EE +L RQ +
Sbjct: 676 RREIEELEEKIEEL-EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 452 IETLMTLVKNQQAEDDSEDETLNES-AIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
+ L V+ + + L E A + + +++ ++EL+E EA+ + L + E +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
Query: 511 SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-----GAQTENKPEEVKYLKSLL 565
+LK L +L + L + A L R+E +ER + E+ E+++ L +
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQ 625
+ E +E IE+L SE+E L ER L A L ELE+ + EL+
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKAD----------LESNRAESNQSAHDEQ 675
+L+ + K + L E L +NL +L + LE+ + + A
Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
Query: 676 A-LQKEIKNLG 685
L+ +IK LG
Sbjct: 975 KRLENKIKELG 985
Score = 67.0 bits (164), Expect = 4e-11
Identities = 75/364 (20%), Positives = 163/364 (44%), Gaps = 51/364 (14%)
Query: 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
E RE +L K +ELE K+A+L + + E+ + + E EE++ L+ L+E +
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRK--ELEELEEELEQLRKELEELSRQISAL 731
Query: 576 TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKF 635
++ +L +EVE+L E L+ ELE E+E+ + + EE +E+L E +
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE-------ERLEEAEEELAEAEAEI 784
Query: 636 QEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTI 695
+E E+L E + L L L+ E+ L + + +
Sbjct: 785 EELEAQIEQLKEELKALREALDE------------------LRAELTLLNEEAANLRERL 826
Query: 696 GDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755
L+ +I E+ ++E + +DI L + EEL + + +LE++ ++ LN ++E
Sbjct: 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
Query: 756 NDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNS 815
+ E+L + L+ ++ + +E++ + ++L +++
Sbjct: 887 EALALLRSELEEL----SEELRELESKRSELR----------------RELEELREKLAQ 926
Query: 816 LKAELEQRHNVVRDLQLKLLQKG----EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
L+ LE + +LQ +L ++ E L+ ++E +++ +++ L+ ++
Sbjct: 927 LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
Query: 872 INID 875
+N+
Sbjct: 987 VNLA 990
Score = 65.5 bits (160), Expect = 1e-10
Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 30/303 (9%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
L++ L L EL + + L EE ++ +L+ELT E +ELE K+ +L V
Sbjct: 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELRLEVS 277
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
E+E + K E+ L + + +++ + + L ++E+L + L + EL
Sbjct: 278 ELEEEIEELQK--ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
EL + + + EEL+E+L+ +E + +E E + E E+ + +L+ LE+
Sbjct: 336 AEELAELEEKL-------EELKEELESLEAELEEL----EAELEELESRLEELEEQLETL 384
Query: 664 RAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
R++ Q +L EI+ L + L + L+ +I + +K +E ++
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE---------ELLKKLEEAEL 435
Query: 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
EL+ + EEL +++ +L+ L +E + +L+A D L
Sbjct: 436 KELQAELEELEEELEELQE-ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
Query: 784 AEM 786
+
Sbjct: 495 ERL 497
Score = 63.2 bits (154), Expect = 6e-10
Identities = 75/355 (21%), Positives = 157/355 (44%), Gaps = 39/355 (10%)
Query: 516 ELTRENRDLVTKN-KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
E TREN D + ELE ++ L R+ E+ ER + + + E++ +L +E
Sbjct: 182 ERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLR-----LEE 236
Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENK 634
E+E+L+ E+++ EE LT ELE +LE+ ++ + EELQ++L
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----- 291
Query: 635 FQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKT 694
N IS+L+ + R + L+ +++ L S L + +
Sbjct: 292 -------------ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
Query: 695 IGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754
+ +L+ K+ + ++ ++ + + E ++ EL+++ EEL +Q+ L + + ++
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK----VAQLELQ 394
Query: 755 ENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVN 814
+ E L+ EDR + +Q E+ E+ + L+ A ++
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA-----------ELE 443
Query: 815 SLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
L+ ELE+ + L+ L + E + + ++ ++++ Q ++ L LE
Sbjct: 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
Score = 62.4 bits (152), Expect = 9e-10
Identities = 66/343 (19%), Positives = 157/343 (45%), Gaps = 40/343 (11%)
Query: 552 ENKPEEVKYLKSLLDEA----------KEEFK--EQTTE--------IEQLRSEVEKLSE 591
E KPEE +++ +EA KE + E+T E + +L +++ L
Sbjct: 151 EAKPEE---RRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLER 207
Query: 592 ERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKEN 651
+ R EL+ EL + + +A+ EEL+E+L+ + QEE E + E
Sbjct: 208 QAEK-AERYKELKAELRELE--LALLVLRLEELREELE----ELQEELKEAEEELEELTA 260
Query: 652 LISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV 711
+ +L+ LE R E ++ + + LQKE+ L + + ++ L+ ++ E+
Sbjct: 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
Query: 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKI 771
++ + E + EL + EL +++ +L+ + +S ++ +E + E L+
Sbjct: 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE----ELESRLEE 376
Query: 772 YEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQ 831
E++L+ ++ ++ AQL+ + + + +LE + + ++ +++ L+
Sbjct: 377 LEEQLETLRSKV-----AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
Query: 832 LKLLQKGEM-INNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873
L++ + + L+ ++E+ Q++ ++ L+ L ++ +
Sbjct: 432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
Score = 53.5 bits (129), Expect = 5e-07
Identities = 47/229 (20%), Positives = 115/229 (50%), Gaps = 18/229 (7%)
Query: 650 ENLISQLKADLESNRAESNQSAHDEQALQKEIKNL-GSLLVDKDKTIGDLKAKIHKYEKY 708
E+++++L+ L+S ++ + A + L+ E++ L +LLV + + +L+ ++ + ++
Sbjct: 192 EDILNELERQLKSLERQA-EKAERYKELKAELRELELALLVLR---LEELREELEELQEE 247
Query: 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
+E+ + ++ EL+ K EEL +V++LE + + ++ + E+
Sbjct: 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEE----IEELQKELYALANEISRLEQQ 303
Query: 769 LKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVR 828
+I +RL ++ +L E LEA +L +++ L+ +LE+ +
Sbjct: 304 KQILRERLANLERQLEE---------LEAQLEELESKLDELAEELAELEEKLEELKEELE 354
Query: 829 DLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
L+ +L + + L++++E+ ++Q + RS + LE Q+A +N +
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
Score = 48.1 bits (115), Expect = 2e-05
Identities = 58/256 (22%), Positives = 103/256 (40%), Gaps = 47/256 (18%)
Query: 383 RLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHE--ED 440
RL EA E + E E+ +E + R+ +E + + ++ E E
Sbjct: 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
Query: 441 LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE------AQHKLKIQNLKQELS 494
LER+ + ++E L +Q E+ SED + IE + + +++ L E +
Sbjct: 829 LERRIAATERRLEDL-----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
Query: 495 ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME-------- 546
LE L E E++S +L+EL + +L + +EL K+AQL R+E +E
Sbjct: 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
Query: 547 -------------------RGAQTENKPEEVKYLKSLLDE-------AKEEFKEQTTEIE 580
E +K L++ + E A EE++E +
Sbjct: 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003
Query: 581 QLRSEVEKLSEERRLL 596
L ++ E L+E + L
Sbjct: 1004 FLTAQKEDLTEAKETL 1019
Score = 46.6 bits (111), Expect = 6e-05
Identities = 37/202 (18%), Positives = 94/202 (46%), Gaps = 19/202 (9%)
Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
++EI+ L + I +L+ KI + EK A ++++ + E+++ +L+ + EEL+
Sbjct: 673 LERRREIEELE-------EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL---LKIYEDRLKAVQDELAEMKCAQL 791
+Q++ L D ++ +E +L ++ E+RL+ ++ELAE
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE------ 779
Query: 792 KPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS 851
EA +QL++++ +L+ L++ + L + E + +L+ ++ +
Sbjct: 780 ---AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
Query: 852 QQQQQQQRSPLKGLENQMAKIN 873
+++ + ++ L + +
Sbjct: 837 ERRLEDLEEQIEELSEDIESLA 858
Score = 43.9 bits (104), Expect = 5e-04
Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 13/171 (7%)
Query: 385 LEARLAEFE-GFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLER 443
LE + E E + E EE + + E+ + E+ +LR + EE E+
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
Query: 444 QRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQH---KLKIQNLKQELSELEAKY 500
+ + + + E SE+ +L EA + + ++ L LE K
Sbjct: 924 LAQLELRLEGLEVRI--DNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
Query: 501 KSLS-------EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
K L EE+E++ + LT + DL + LE + ++ R E
Sbjct: 982 KELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE 1032
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 72.8 bits (179), Expect = 7e-13
Identities = 54/272 (19%), Positives = 129/272 (47%), Gaps = 21/272 (7%)
Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
+ ++ +L R+E ++R + + E++ +++ LDE +E + + +I ++ E+E+
Sbjct: 670 RSEPAELQRLRERLEGLKR--ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
Query: 589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL--- 645
L +E L R ELE +L + I +EL+ +++ +E + L
Sbjct: 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787
Query: 646 ------------MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK 693
+S+ E +S+++A L + N+ +++ L+KEI+ L +D +
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
Query: 694 TIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753
I ++ +I ++E+ + E + +L+++ +L ++ +LEA L ++
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ----LRELER 903
Query: 754 MENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
+ + + K L + +L+A+++EL+E
Sbjct: 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
Score = 69.7 bits (171), Expect = 5e-12
Identities = 61/275 (22%), Positives = 135/275 (49%), Gaps = 35/275 (12%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
+++ LK+ELS L+++ + + +++S +L + +R+ ++ + ++LE + +L R+EE
Sbjct: 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
Query: 545 MERGAQT-----ENKPEEVKYLKSLLD---EAKEEFKEQTTEIE---------QLRSEVE 587
+E + EN E+K L++ ++ E + +E ++E ++++E+
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS 801
Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
KL EE + R E+E +L + +ELQE+ ++ + + E L
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861
Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
+KE L +L+ L+ +++L S L D K +L+A++ + E+
Sbjct: 862 KKEELEEELEE------------------LEAALRDLESRLGDLKKERDELEAQLRELER 903
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742
++ + K K ++ELK K E L ++++++E
Sbjct: 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
Score = 69.3 bits (170), Expect = 6e-12
Identities = 97/452 (21%), Positives = 184/452 (40%), Gaps = 81/452 (17%)
Query: 383 RLLEARLAEFEGFD-KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDL 441
R + +A FD KKE + EE E E + +E++ +++LR + E
Sbjct: 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKR----QQLERLRRE-REKA 210
Query: 442 ERQRKFYKTQIETLMT-LVKNQQAEDDSEDETLNE-SAIEAQHKLKIQNLKQELSELEAK 499
ER + K + E L+K ++A + ++ + +++E + ++ L +E+SELE +
Sbjct: 211 ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE----LEKLTEEISELEKR 266
Query: 500 YKSLSEEHEDMSGKLKELTR-ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV 558
+ + + E+++ K+K+L E + K ELE ++A L R + E ER +
Sbjct: 267 LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-------- 318
Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
+A+E + EI++L +E+E+L E R +L E +
Sbjct: 319 --------DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK------- 363
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
+ E+L+ +L+ ++ +F E + L +E + +LK ++ L+
Sbjct: 364 EELEDLRAELEEVDKEFAE---TRDELKDYREK-LEKLKREINE--------------LK 405
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
+E+ L L + + DL A I E I EL+ + E+ ++
Sbjct: 406 RELDRLQEELQRLSEELADLNAAI--------------AGIEAKINELEEEKEDKALEIK 451
Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEAS 798
K E L + + ++ ++ E L +Q ELAE EA
Sbjct: 452 KQEWK----LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE---------AEAQ 498
Query: 799 AATPSQYRKQLEDQVNSLKAELEQRHNVVRDL 830
A + + LKA ++ H V L
Sbjct: 499 ARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
Score = 62.8 bits (153), Expect = 8e-10
Identities = 71/393 (18%), Positives = 163/393 (41%), Gaps = 59/393 (15%)
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN------RDLVTKNKELEG 533
A+ K + +EL E+E + L ++ +L+ L RE + L+ + +E EG
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225
Query: 534 KVAQLSRRVEEMERG-----AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
L + E +ER Q + EE++ L + E ++ +E +E+L +++
Sbjct: 226 YE--LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283
Query: 589 LSEERRL-LTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
L EE +L + + ELE E+ + IA K E+ +E+L
Sbjct: 284 LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL------------------- 324
Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
++L+A+++ AE + + + +K L + + + DL+A++ + +K
Sbjct: 325 ------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
+A +++ K + + +LK + EL +++ +L+ + Q + ++ + +
Sbjct: 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
Query: 768 LLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVV 827
L E+ + E+ + + +QL ++ + EL
Sbjct: 439 L----EEEKEDKALEIKKQE----------------WKLEQLAADLSKYEQELYDLKEEY 478
Query: 828 RDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRS 860
++ +L + + +AQ S+++ + R+
Sbjct: 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
Score = 56.6 bits (137), Expect = 5e-08
Identities = 63/287 (21%), Positives = 135/287 (47%), Gaps = 18/287 (6%)
Query: 592 ERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESL---VYERLMSE 648
R + +E R+ L +K + LQ +L +EN+ E S R + E
Sbjct: 662 PRGGILFSRSEPAELQRLRERLEGLKRE-LSSLQSELRRIENRLDELSQELSDASRKIGE 720
Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY 708
E I QL+ + E + + D +L++EI+N+ S L + + I +L+ +HK E+
Sbjct: 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE- 779
Query: 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA---DCQSYLNTIKNMENDERSTKHNQ 765
A+ + + I E++ + +L ++V+++EA + + LN + +
Sbjct: 780 -ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHN 825
++ ++++K+++ E+ + K LE + LE ++ LK E ++
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGK--KEELEEELEELEAALRDLESRLGDLKKERDELEA 896
Query: 826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
+R+L+ K I L+AQ+EK +++ + ++ L+ LE ++++I
Sbjct: 897 QLRELERK-------IEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
Score = 55.1 bits (133), Expect = 2e-07
Identities = 65/358 (18%), Positives = 149/358 (41%), Gaps = 43/358 (12%)
Query: 515 KELTRENRDLVTKN-KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK 573
KE E + V +N + L+ + + +++E + R K E + L E E
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRR---EREKAERYQALLKEKREY--EGY 226
Query: 574 EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN 633
E E E L + E + + A LE ELE+ EE+ E +E
Sbjct: 227 ELLKEKEALERQKEAIERQL-------ASLEEELEKLT----------EEISELEKRLEE 269
Query: 634 KFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK 693
Q + +++ E ++K + L+ EI +L + +K++
Sbjct: 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGE--------------LEAEIASLERSIAEKER 315
Query: 694 TIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753
+ D + ++ K E + + + E++I E + + ++LT++ +L+ + + ++
Sbjct: 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
Query: 754 MENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQV 813
++ + T+ LK Y ++L+ ++ E+ E+K + L+ S+ L +
Sbjct: 376 VDKEFAETRDE----LKDYREKLEKLKREINELKRELDR--LQEELQRLSEELADLNAAI 429
Query: 814 NSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
++A++ + D L++ ++ + L A + K +Q+ + +E +++K
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
Score = 46.6 bits (111), Expect = 6e-05
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 32/242 (13%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
+ E D + +L + EE + E L + +
Sbjct: 775 HKLEEALNDLEARLSHSR--IPEIQAELSKLEEE----VSRIEARLREIEQKLNRLTLEK 828
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+ E E K +I+++++E+ L K + L EE E++ L++L DL
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
+ ELE ++ +L R++EE+E AQ E K + + LK+ L+ +EE E +
Sbjct: 889 KERDELEAQLRELERKIEELE--AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
Query: 586 V------EKLSEERRLLTVR---------SAELEYELEQRDYLIAVKTDGAEELQEKLDY 630
E + E + + A EYE + EL+EK
Sbjct: 947 PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD---------ELKEKRAK 997
Query: 631 ME 632
+E
Sbjct: 998 LE 999
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHE- 438
E + +EARL E E + +E E + +EQ+ D + +K + ++ E
Sbjct: 805 EEVSRIEARLREIEQ------KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Query: 439 -----EDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQH-KLKIQNLKQE 492
E+LE + + + + L + + + + E D + L E + + + +I+ ++
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
Query: 493 LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL--EGKVAQLSRRVE-EMERGA 549
LSEL+AK ++L EE L E+ + +E V +RVE E+
Sbjct: 919 LSELKAKLEALEEE-------LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971
Query: 550 QTENK-PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
+E + + LDE KE+ + E + + +E+ +++R
Sbjct: 972 PVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
Score = 29.7 bits (67), Expect = 9.3
Identities = 33/178 (18%), Positives = 72/178 (40%), Gaps = 34/178 (19%)
Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
E+ + E++I L +E QQ+ +L ER + LLK
Sbjct: 176 LEELEEVEENIERLDLIIDEKRQQLERLR---------------REREKAERYQALLKEK 220
Query: 773 ED-----RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVV 827
+ LK + + K ++E A+ + ++L ++++ L+ LE+ ++
Sbjct: 221 REYEGYELLKEKEALERQ------KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL 274
Query: 828 RDLQLKLLQKGE--------MINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
+L K+ GE I L+A++ ++ ++ L+ E ++AK+ +
Sbjct: 275 EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 64.3 bits (157), Expect = 2e-10
Identities = 92/433 (21%), Positives = 177/433 (40%), Gaps = 55/433 (12%)
Query: 385 LEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQ 444
+EAR E E D+ E ++R+ E + + E+ + L E+ EE E
Sbjct: 312 VEARREELE--DRDE---ELRDRLEECRVAA-QAHNEEAESLREDADDLEERAEELREEA 365
Query: 445 RKFYKTQIETLMTLVK--NQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
+ E + + E + E E L E + + +L E +
Sbjct: 366 AELESELEEAREAVEDRREEIEELEEEIEELRE---------RFGDAPVDLGNAEDFLEE 416
Query: 503 LSEEHEDMSGKLKELT---RENRDLVTKNKEL--EGKVAQLSRRVEEMERGAQTENKPEE 557
L EE +++ + EL R R+ V + + L GK + + VE E E
Sbjct: 417 LREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRER 476
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
V+ L++ L++ +EE +E +E+ VE RL R LE + +R I K
Sbjct: 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERRED-LEELIAERRETIEEK 535
Query: 618 TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQS------- 670
+ AEEL+E+ +E + +E+ E E ++ A+L S AE +
Sbjct: 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV-AELNSKLAELKERIESLERI 594
Query: 671 ----------AHDEQALQKEIKNLGSL-------LVDKDKTIGDLKAKIHKYEKYYAVMK 713
+ + L+++ + L L L +K + +L+A+ E +
Sbjct: 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAR 652
Query: 714 EDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYE 773
ED++ E+ + +++ K +EL ++ L+A+ + N ++ +E + + ++
Sbjct: 653 EDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRV----- 707
Query: 774 DRLKAVQDELAEM 786
+ L+A+ DE E+
Sbjct: 708 EALEALYDEAEEL 720
Score = 55.8 bits (135), Expect = 9e-08
Identities = 101/491 (20%), Positives = 195/491 (39%), Gaps = 58/491 (11%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE-----------DLERQRKFYKTQIET 454
EEYRE D R E +D ++ +L+ Q EE LE + +IE
Sbjct: 165 EEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIER 224
Query: 455 LMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKL 514
+ + D DE L E + + +++ L+ E+ +L E E+++ ++
Sbjct: 225 YEEQREQARETRDEADEVLEE---HEERREELETLEAEIEDLRETIAETEREREELAEEV 281
Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEME-RGAQTENKPEEVKYLKSLLDEAKEEFK 573
++L +L + +L + E +E R + E++ EE L+ L+E + +
Sbjct: 282 RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE---LRDRLEECRVAAQ 338
Query: 574 EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN 633
E E LR + + L E L +AELE ELE+ + + + EEL+E+++ +
Sbjct: 339 AHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
Query: 634 KFQEESLVYERLMSEKENLISQLK------ADLESNRAESNQSAHDEQALQKEIKN---- 683
+F + + E L + A+LE+ + + + +AL + K
Sbjct: 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG 458
Query: 684 ---LGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL 740
GS V+ TI + + ++ + E ++E+ + E+ + + E ++ +L
Sbjct: 459 QPVEGSPHVE---TIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERL 514
Query: 741 EADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQ-----DEL---AEMKCAQLK 792
E E E + E+ I E R +A + EL AE K
Sbjct: 515 E-------------ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852
+ E + + +L ++ LK +E +R L + + I L+ + E
Sbjct: 562 EAEEEAEEAREEV-AELNSKLAELKERIE-SLERIRTLLAAIADAEDEIERLREKREALA 619
Query: 853 QQQQQQRSPLK 863
+ ++R L
Sbjct: 620 ELNDERRERLA 630
Score = 53.5 bits (129), Expect = 5e-07
Identities = 106/485 (21%), Positives = 198/485 (40%), Gaps = 79/485 (16%)
Query: 377 DPYETIRLLEARLAEFEGF-----DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVK 431
D +E + LE+ LAE + +++E + R+E EV E+ + EE +T E ++
Sbjct: 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET-LEAEIE 261
Query: 432 KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQ 491
LRE E ER+R E L V++ + + +E ++ EA
Sbjct: 262 DLRETIAET-ERER-------EELAEEVRDLRERLEELEEERDDLLAEA----------- 302
Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551
L + +A+ ++ E++ + +EL + + + L +++E A+
Sbjct: 303 GLDDADAE--AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE--- 608
EE L+S L+EA+E +++ EIE+L E+E+L E V E LE
Sbjct: 361 --LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
Query: 609 -QRDYLIAVKTDGAEELQEKLDYMENKFQ--------------EESLVYERLMSEKENLI 653
+RD L + + L+ + +E E S E + E +
Sbjct: 419 EERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETI-EEDRERV 477
Query: 654 SQLKADLES------------NRAESNQSAHDE-QALQKEIKNLGSLLVDKDKTIGDLKA 700
+L+A+LE RAE A D + L++ ++L L+ ++ +TI + +
Sbjct: 478 EELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRE 537
Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
+ + + AEL+ + EE + + E + + + + +
Sbjct: 538 RA--------------EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAE 583
Query: 761 TKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAEL 820
K E L +I L A+ D AE + +L+ EA A + R++L ++ K EL
Sbjct: 584 LKERIESLERI-RTLLAAIAD--AEDEIERLREKREALAELNDERRERLAEK-RERKREL 639
Query: 821 EQRHN 825
E +
Sbjct: 640 EAEFD 644
Score = 50.4 bits (121), Expect = 5e-06
Identities = 66/294 (22%), Positives = 127/294 (43%), Gaps = 42/294 (14%)
Query: 376 DDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWEN--NVKKL 433
++ E + LEA L + E E + EE E ED + + + E ++++L
Sbjct: 471 EEDRERVEELEAELEDLEE------EVEEVEERLERAEDLVEAEDRIERLEERREDLEEL 524
Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL-KIQNLKQE 492
+ E +E +R + E L +AE + + E E+ EA+ ++ L +
Sbjct: 525 IAERRETIEEKR----ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
Query: 493 LSELEAKYKSLS------EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
L+EL+ + +SL D +++ L + L N E ++A+ R E+E
Sbjct: 581 LAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
++EA+E+ + +EQ+ ++++L EER L +E E
Sbjct: 641 AEFDEAR-----------IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689
Query: 607 LEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADL 660
LE+ EEL+E+ + +EN+ + +Y+ E E++ L+A+L
Sbjct: 690 LEEL-----------EELRERREALENRVEALEALYDE-AEELESMYGDLRAEL 731
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 63.2 bits (154), Expect = 5e-10
Identities = 100/471 (21%), Positives = 220/471 (46%), Gaps = 46/471 (9%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
+ I LE ++ E + +K EY E+ E D + E++ + E + + E+ +E
Sbjct: 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
E++ + + K + E + E L E + + + K+EL L+ +
Sbjct: 333 LEEKEERLEEL---------KKKLKELEKRLEELEERHELYE---EAKAKKEELERLKKR 380
Query: 500 YKSLS-----EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
L+ +E E++ +E+ E + + EL+ ++ +L + +EE++ + K
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-----KAK 435
Query: 555 PEEVKYLKSLLDEAKEEFKEQ-TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
+ + L +E ++E E+ T E++++ E++++ E+ R L ELE L++ L
Sbjct: 436 GKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495
Query: 614 IAVKT--DGAEELQEKLD-YMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAES 667
I +K + +EL+EKL Y + ++++ YE+L + L I LK +LE
Sbjct: 496 IKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK 555
Query: 668 NQSAHDEQALQKEIKNLGSLLVDKD----KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
+ A E+ L + + L LL + + +++ +L+ ++ + E +Y E K EK++
Sbjct: 556 KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE-LKDAEKEL 614
Query: 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMEN--DERSTKHNQEKLLKIYEDRLKAVQD 781
+ + ++L +++ K + ++ + +E K+++E+ ++ E+ L+ +
Sbjct: 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE-LSR 673
Query: 782 ELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQL 832
ELA L A + R++++ + LK ELE+R ++L+
Sbjct: 674 ELA---------GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
Score = 62.0 bits (151), Expect = 1e-09
Identities = 111/502 (22%), Positives = 243/502 (48%), Gaps = 54/502 (10%)
Query: 404 IREEYREVQEDFRKM--FEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN 461
+ +E +E++E ++ E++ E + +KL E+ E LE + + K +IE L VK
Sbjct: 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE-LEERIEELKKEIEELEEKVKE 284
Query: 462 QQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE---EHEDMSGKLKELT 518
+ + +E + S ++ +++ +++ LS LE + + E E E+ +L+EL
Sbjct: 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
Query: 519 RENRDLVTKNKELEGKVAQLSR---RVEEMER--GAQTENKPEEVKYLKSLLDEAKEEFK 573
++ ++L + +ELE + + EE+ER T PE+++ L++AKEE +
Sbjct: 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE 404
Query: 574 EQTTEIEQLRSEVEKLSEERR--LLTVRSAEL-------EYELEQRDYLIAVKT----DG 620
E+ ++I E++K +E + + ++ A+ E E R L+ T
Sbjct: 405 EEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRI 464
Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
+EL+E ++ E K ++E E+++ ++ LI + + E ++ + L+K+
Sbjct: 465 EKELKE-IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
Query: 681 IKNLGSLLVDKDKTIGDLKA------KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
+ L K G++K+ K+ + +K A +++ E+++AEL + EEL
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG 583
Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL--AEMKCAQLK 792
+ + + L ++ N+ K + EK L+ E LK +++EL A + A+ +
Sbjct: 584 ---FESVEELEERLKELEPFYNEYLELK-DAEKELEREEKELKKLEEELDKAFEELAETE 639
Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV--VRDLQLKLLQKGEMINNLKAQMEK 850
LE + RK+LE ELE++++ +L+ + L+ + L+A++E+
Sbjct: 640 KRLE-------ELRKELE--------ELEKKYSEEEYEELREEYLELSRELAGLRAELEE 684
Query: 851 SQQQQQQQRSPLKGLENQMAKI 872
++++++ + L+ L+ ++ +
Sbjct: 685 LEKRREEIKKTLEKLKEELEER 706
Score = 53.9 bits (130), Expect = 3e-07
Identities = 59/285 (20%), Positives = 134/285 (47%), Gaps = 19/285 (6%)
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
DD E+ N + + K +I+ L++ + E + + E+ +++ L+E+ ++
Sbjct: 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEIS 213
Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
++ EL ++ +L + V+E+E + + + EE++ L+ +K + +E+ E+E+ E
Sbjct: 214 SELPELREELEKLEKEVKELE---ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
++K EE EL+ + E+ L + +EL+E ++ ++ +EE E
Sbjct: 271 LKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE-IEKRLSRLEEEINGIEER 329
Query: 646 MSEKENL------ISQLKADLESNRAESNQSA---HDEQALQKEIKNLGSLLVDKDKTIG 696
+ E E + + +LE E + + +A ++E++ L L T
Sbjct: 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL--TGLTPE 387
Query: 697 DLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
L+ ++ + EK ++E+ I ELK + +EL + + +L+
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432
Score = 51.2 bits (123), Expect = 2e-06
Identities = 85/409 (20%), Positives = 189/409 (46%), Gaps = 37/409 (9%)
Query: 427 ENNVKKLREQHEEDLERQRKFYKT--QIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL 484
N+ ++ ++ + +ER KF K IE L+ + + E E ++ E + +L
Sbjct: 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
Query: 485 -KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
K++ +EL EL+ + + L +E E + G ++L + R+L + +EL+ ++ +L +V+
Sbjct: 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
E++ + + ++ + E +++ + +E+ + +E+ +E R EL
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
+ +L +EL+++L + +E +YE ++KE L +LK L
Sbjct: 344 KKKL--------------KELEKRL----EELEERHELYEEAKAKKEEL-ERLKKRLTGL 384
Query: 664 RAESNQSAHDE-----QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE-DRK 717
E + +E + +++EI + + + + K I +LK I + +K R+
Sbjct: 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRE 444
Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER---STKHNQEKLLKIYE- 773
E+ EL EE T ++ ++E + + + + + R + +L+K+ E
Sbjct: 445 LTEEHRKELL---EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501
Query: 774 -DRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELE 821
++LK ++++L + +L+ E + K L+ ++ SLK ELE
Sbjct: 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK-LKGEIKSLKKELE 549
Score = 47.8 bits (114), Expect = 3e-05
Identities = 71/287 (24%), Positives = 141/287 (49%), Gaps = 27/287 (9%)
Query: 396 DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLRE--QHEEDLERQRKFYKTQIE 453
+KE + E + ++++ ++ EE++ +++L + + E +L + ++ + Q++
Sbjct: 449 HRKELLEEYTAELKRIEKELKE-IEEKERKLRKELRELEKVLKKESELIKLKELAE-QLK 506
Query: 454 TLMTLVKNQQAEDDSEDETLNESAIEAQHKLK--IQNLKQELS---ELEAKYKSLSEEHE 508
L +K E+ + E E KLK I++LK+EL EL+ K L ++ +
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566
Query: 509 DMSGKLKELTRENRDLVTKN-KELEGKVAQL----SRRVEEMERGAQTENKPEEVKYLKS 563
++ +L EL +E +L ++ +ELE ++ +L + +E + + E + +E+K L+
Sbjct: 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
Query: 564 LLDEAKEEFKEQTTEIEQLRSEVE------------KLSEERRLLTVRSAELEYELEQRD 611
LD+A EE E +E+LR E+E +L EE L+ A L ELE+ +
Sbjct: 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELE 686
Query: 612 YLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKA 658
E+L+E+L+ E K ++E E+ + E L ++K
Sbjct: 687 KRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKK 732
Score = 37.0 bits (86), Expect = 0.053
Identities = 61/310 (19%), Positives = 128/310 (41%), Gaps = 47/310 (15%)
Query: 540 RRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVR 599
R++ ++ EV E E+F ++T IE+L E EK
Sbjct: 152 RQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEK----------- 200
Query: 600 SAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD 659
ELE+ I + EL+E+L+ +E + +E + E + I +L+ +
Sbjct: 201 ------ELEEVLREINEISSELPELREELEKLEKEVKE--------LEELKEEIEELEKE 246
Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
LES L+ + L + + ++ I +LK +I + E+ +KE ++
Sbjct: 247 LES--------------LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA 292
Query: 720 EK--DIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLK 777
E+ ++E + + +++ K + + +N I+ + + E+L K +LK
Sbjct: 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK----KLK 348
Query: 778 AVQDELAEMK-CAQLKPSLEASAATPSQYRKQLED-QVNSLKAELEQRHNVVRDLQLKLL 835
++ L E++ +L +A + +K+L L+ ELE+ +++ ++
Sbjct: 349 ELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408
Query: 836 QKGEMINNLK 845
+ I LK
Sbjct: 409 KITARIGELK 418
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 58.9 bits (143), Expect = 9e-09
Identities = 110/508 (21%), Positives = 233/508 (45%), Gaps = 61/508 (12%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
+ +FE + E++E +K+ ++ ++ E + + + LE+ + ++++E L
Sbjct: 305 RSKFESEGALRAEELEELKKKL-NQKISELEEAAEAANAKCDS-LEKTKSRLQSELEDLQ 362
Query: 457 TLVKNQQA---EDDSEDETLNESAIEAQHKL-----KIQNLKQELSELEAKYKSLSEEHE 508
++ A E + + + ++ E + K+ ++ ++E L + L E E
Sbjct: 363 IELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELE 422
Query: 509 DMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG-AQTENKPEEVKYLKSLLDE 567
++ +++ L REN++L + +L ++ + R V E+E+ + E + +E L++ L+E
Sbjct: 423 ELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDE---LQAALEE 479
Query: 568 AK-----EEFKEQTTEIE--QLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG 620
A+ EE K ++E Q+RSE+E+ R AE E E E
Sbjct: 480 AEAALELEESKVLRAQVELSQIRSEIER----------RLAEKEEEFENTR---KNHQRA 526
Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE-SNRAESNQSAHDEQALQK 679
E LQ L+ E K + E+ RL + E I++L+ L+ +N+A + + + Q+
Sbjct: 527 IESLQATLE-AEAKGKAEAS---RLKKKLEGDINELEIALDHANKANAEAQKNV-KKYQQ 581
Query: 680 EIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED--------------RKTKEKDIAE 725
++K L + + ++ + D + ++ E+ ++ + RK E ++AE
Sbjct: 582 QVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETELAE 641
Query: 726 LKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
+ ELT Q + L A + + +++D + LK E+R K Q + A
Sbjct: 642 ASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNE----LKAAEERAKKAQADAAR 697
Query: 786 MKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEM-INNL 844
+ +L+ E S RKQLE QV L+ L++ K++QK E + L
Sbjct: 698 L-AEELRQEQEHSQHLER-LRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVREL 755
Query: 845 KAQMEKSQQQQQQQRSPLKGLENQMAKI 872
+A+++ Q++ + + L+ +E ++ ++
Sbjct: 756 EAELDGEQRRHAETQKNLRKMERRVKEL 783
Score = 49.7 bits (119), Expect = 7e-06
Identities = 99/425 (23%), Positives = 203/425 (47%), Gaps = 41/425 (9%)
Query: 416 RKMFEEQQTDWENNVKKLREQHEEDLER------QRKFYKTQIETLMTLVKNQQAEDDSE 469
RK EE E + LR++H++ + Q + K + E + ++ + + ++
Sbjct: 108 RKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQ 167
Query: 470 DETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK 529
+ + ++ + A+ K K L+ +LSEL+ K L + D++ + L EN DL + +
Sbjct: 168 LDQIAKAKLNAEKKAK--QLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLE 225
Query: 530 ELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT------EIEQLR 583
E E +V+ LS+ +Q E++ EE K +SL +E++E Q +++ LR
Sbjct: 226 EAEAQVSNLSK------LKSQLESQLEEAK--RSLEEESRERANLQAQLRQLEHDLDSLR 277
Query: 584 SEVEKLSEERRLLTVRSAELEYELEQ----RDYLIAVKTDGAEELQEKLDYMENKFQEES 639
++E+ SE + L + ++ E++Q + A++ + EEL++KL+ ++ +E +
Sbjct: 278 EQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAA 337
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
E S+L+++LE + E ++ L+K+ KN DK + + K
Sbjct: 338 EAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNF-------DKILAEWK 390
Query: 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER 759
K+ + + + + + ++ LK + EEL QV L + ++ + I ++ +
Sbjct: 391 RKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLG 450
Query: 760 STKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQY-RKQLEDQVNSLKA 818
N +L K RL+A +DEL A L+ + A S+ R Q+E ++ +++
Sbjct: 451 EGGRNVHELEKA-RRRLEAEKDELQ----AALEEAEAALELEESKVLRAQVE--LSQIRS 503
Query: 819 ELEQR 823
E+E+R
Sbjct: 504 EIERR 508
Score = 35.4 bits (82), Expect = 0.14
Identities = 89/416 (21%), Positives = 184/416 (44%), Gaps = 61/416 (14%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
+ L++++ ELEA+ + L EE E + + DL ++ELE +LS R+EE
Sbjct: 34 VAQLQKKIKELEARIRELEEELEAERAARAKAEKARADL---SRELE----ELSERLEEA 86
Query: 546 ERG--AQTE---NKPEEVKYLKSLLDEAKEEFKEQTT---------------EIEQLRSE 585
AQ E + E+ L+ L+EA + +E +IEQL+ +
Sbjct: 87 GGATAAQIELNKKREAELAKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQ 146
Query: 586 VEKLSEERRLLTVRSAELEYELEQ--RDYLIAVKT-DGAE----ELQEKLDYMENKFQEE 638
K +E+ L +L +L+Q + L A K E ELQ KLD ++ + +
Sbjct: 147 KAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDL 206
Query: 639 SLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDL 698
+ RL SE +L QL+ A+ + + + L+ +++ L ++ + +L
Sbjct: 207 TSQKSRLQSENSDLTRQLEEA----EAQVSNLSKLKSQLESQLEEAKRSLEEESRERANL 262
Query: 699 KAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDE 758
+A++ + E ++E ++ +E K EL +Q++K A+ Q + E++
Sbjct: 263 QAQLRQLEHDLDSLREQL----EEESEAK---AELERQLSKANAEIQQWR---SKFESEG 312
Query: 759 RSTKHNQEKLLKIYEDRLKAVQD--ELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSL 816
E+L K ++ +++ E A KC L+ + + +L+ ++ L
Sbjct: 313 ALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKT-----------KSRLQSELEDL 361
Query: 817 KAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
+ ELE+ + +L+ K +++ K ++++ Q + + + L ++ ++
Sbjct: 362 QIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRL 417
Score = 31.2 bits (71), Expect = 2.9
Identities = 58/314 (18%), Positives = 126/314 (40%), Gaps = 38/314 (12%)
Query: 462 QQAEDDSEDETLNESAIEAQHKLKIQNLKQEL--------SELEAKYKSLSEEHEDMSGK 513
Q A +++E E + + ++++ ++ E+ E E K+ E +
Sbjct: 474 QAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESLQAT 533
Query: 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG---AQTENK--PEEVKYLKSLLDE- 567
L+ + + K+LEG + +L ++ + AQ K ++VK L++ ++E
Sbjct: 534 LEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQVEEE 593
Query: 568 --AKEEFKEQ-----------TTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614
A+E+ +EQ E+E+LRS +E+ R+ AE + +
Sbjct: 594 QRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQN 653
Query: 615 AVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
+ +L+ +L +++ E + + + E R E S H E
Sbjct: 654 SSLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLE 713
Query: 675 ---QALQKEIKNLGSLLVDKD--------KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
+ L+ ++K L L + + K I L+A++ + E + +K++
Sbjct: 714 RLRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNL 773
Query: 724 AELKTKCEELTQQV 737
+++ + +EL QV
Sbjct: 774 RKMERRVKELQFQV 787
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 55.4 bits (133), Expect = 8e-08
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 13/212 (6%)
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
Q ++ +++ L++ L A+ E + TE E RSE++K +ER + A L
Sbjct: 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133
Query: 609 QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRA 665
+ +A T A++LQ +L + + ++ + L + ++ L +QLK+ + +
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKL 193
Query: 666 ESNQSAHDEQALQ----------KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715
S Q + Q L +E+ + + I A+I + + A E
Sbjct: 194 RSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ 253
Query: 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSY 747
+ +E+ + L+T L Q+V +LEA Q+Y
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAY 285
Score = 38.9 bits (90), Expect = 0.011
Identities = 27/197 (13%), Positives = 76/197 (38%), Gaps = 7/197 (3%)
Query: 413 EDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN-QQAEDDSEDE 471
+D R +T+ + + E +R+ +++++ + +Q +
Sbjct: 77 DDIRPQLRALRTELG-----TAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131
Query: 472 TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL 531
A+ + Q+L+ L L + + L + + + K+L L ++ +L
Sbjct: 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191
Query: 532 EGKVAQLSRRVEEMERGAQT-ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLS 590
+ + AQ+ + + + A + + EE+ + + + +++ +I Q ++ +
Sbjct: 192 KLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARA 251
Query: 591 EERRLLTVRSAELEYEL 607
E+ R + LE
Sbjct: 252 EQIRERERQLQRLETAQ 268
Score = 31.5 bits (71), Expect = 2.1
Identities = 31/201 (15%), Positives = 78/201 (38%), Gaps = 10/201 (4%)
Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714
++ L + R E + +++A + E + S L + ++ ++ + A ++
Sbjct: 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ 137
Query: 715 DRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED 774
+ K +L+T+ + L +Q +LEA QS + K ++ K ++L +
Sbjct: 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLK---SQVLDLKLR 194
Query: 775 RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKL 834
+ Q+ A + A + +Q + A++ Q+ ++
Sbjct: 195 SAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQK-------AQQI 247
Query: 835 LQKGEMINNLKAQMEKSQQQQ 855
+ E I + Q+++ + Q
Sbjct: 248 AARAEQIRERERQLQRLETAQ 268
Score = 31.5 bits (71), Expect = 2.5
Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 13/192 (6%)
Query: 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
+NL S + D L+A + + +E +EL+ +E +L
Sbjct: 67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELA 126
Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
A Q+ + + + + Q +L + E R + SL+AS
Sbjct: 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ----------AQSLQASQKQ 176
Query: 802 PSQYRKQLEDQVNSLKAE---LEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858
QL+ QV LK +EQ + + E + A +++ Q QQ+
Sbjct: 177 LQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQR 236
Query: 859 RSPLKGLENQMA 870
+ + Q+A
Sbjct: 237 DAQISQKAQQIA 248
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 54.2 bits (130), Expect = 2e-07
Identities = 70/324 (21%), Positives = 137/324 (42%), Gaps = 27/324 (8%)
Query: 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP-----EEVKYLKSLLDEA 568
L+ RE DL+ K LEG V+ + R+E++E + + E+ K +S +
Sbjct: 145 LEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESM 204
Query: 569 KEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKL 628
E + + + + +L ++ + LT + E + LE + A EL+++L
Sbjct: 205 SAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRL 264
Query: 629 DYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLL 688
M + ++E L E E QL DL + + S L +E+ +LGSL
Sbjct: 265 KKMTIQRRDEETERIDLQLENE----QLHEDLRTLQERLESSQQKAGLLGEELASLGSL- 319
Query: 689 VDKDKTIGDL-KAKIHKYEKYYAV------MKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
+D TI +L ++++ + + +KE + ++ L+ E ++ KL
Sbjct: 320 --RDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLS 377
Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
A+ ++ +ERS + E L I +D VQ + ++L+ +L
Sbjct: 378 AELLKLEEWLQ----EERSQREKLEVELGIEKD-CNRVQLSENRRELSELRSALRVLQKE 432
Query: 802 PSQY---RKQLEDQVNSLKAELEQ 822
Q +++L D + L+ L++
Sbjct: 433 KEQLQEEKQELLDYIRVLELRLDK 456
Score = 45.0 bits (106), Expect = 2e-04
Identities = 55/287 (19%), Positives = 123/287 (42%), Gaps = 18/287 (6%)
Query: 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGA 549
++ ELE ++K E MS + L + + + ELE + L+++ +E +R
Sbjct: 184 TEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVL 243
Query: 550 QTE-----NKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
+ LK L + + +++ TE L+ E E+L E+ R E
Sbjct: 244 EGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLR----TLQERL 299
Query: 605 YELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
+Q+ L+ + L++ ++ + ES +S+ + + ++ R
Sbjct: 300 ESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQER 359
Query: 665 AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK----E 720
QSA +A + I+ L + L+ ++ + + +++ K E + K+ + +
Sbjct: 360 ETLRQSA---EADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENR 416
Query: 721 KDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
++++EL++ L ++ +L+ + Q L+ I+ +E R K EK
Sbjct: 417 RELSELRSALRVLQKEKEQLQEEKQELLDYIRVLE--LRLDKEADEK 461
Score = 33.4 bits (76), Expect = 0.62
Identities = 49/263 (18%), Positives = 102/263 (38%), Gaps = 25/263 (9%)
Query: 625 QEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAE-------------SNQSA 671
+E+ D M+ E V S+ + I QL+ L + + S++S
Sbjct: 150 RERNDLMKKFLALEGDV-----SDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESM 204
Query: 672 HDEQ-ALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKC 730
E+ AL + +++ ++ I L K + ++ ++ E+ ELK +
Sbjct: 205 SAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRL 264
Query: 731 EELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQ 790
+++T Q E + + + D R+ ++ L+ + + + +ELA + +
Sbjct: 265 KKMTIQRRDEETERIDLQLENEQLHEDLRTL----QERLESSQQKAGLLGEELASLGSLR 320
Query: 791 LK--PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQM 848
L S +Q QL +LK Q L+ + I L A++
Sbjct: 321 DHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAEL 380
Query: 849 EKSQQQQQQQRSPLKGLENQMAK 871
K ++ Q++RS + LE ++
Sbjct: 381 LKLEEWLQEERSQREKLEVELGI 403
Score = 30.7 bits (69), Expect = 3.7
Identities = 66/316 (20%), Positives = 131/316 (41%), Gaps = 43/316 (13%)
Query: 403 QIREEYREVQEDFRK--MFEEQQTDWENNVKKLR------EQHEEDLERQRKFYKTQIET 454
Q+ RE + +K E +D + +++L + E+LE Q K ++ E+
Sbjct: 144 QLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSES 203
Query: 455 LM---TLVKNQQAED-------DSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLS 504
+ + Q+AE+ + + +TL + E L + + +ELE L
Sbjct: 204 MSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVL--EGTQDIEAELERMKGELK 261
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL 564
+ + M+ + ++ E DL +N++L + L R+E ++ A EE+ L SL
Sbjct: 262 QRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLG--EELASLGSL 319
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAV--KTDGAE 622
D E + E Q+ ++ +L+ L ++ + ++ E+ + D +
Sbjct: 320 RDHTIAELHQSRLESAQMSLQLSQLN-----LALKEGQSQWAQERETLRQSAEADKDRIQ 374
Query: 623 ELQEKLDYMENKFQEESLVYERL--------------MSEKENLISQLKADLESNRAESN 668
+L +L +E QEE E+L +SE +S+L++ L + E
Sbjct: 375 KLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKE 434
Query: 669 QSAHDEQALQKEIKNL 684
Q ++Q L I+ L
Sbjct: 435 QLQEEKQELLDYIRVL 450
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 53.9 bits (129), Expect = 4e-07
Identities = 81/461 (17%), Positives = 191/461 (41%), Gaps = 64/461 (13%)
Query: 422 QQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA- 480
Q DW ++ K Q + L + K + +E + N+ + + + + +
Sbjct: 574 QLEDWLHSKSKEINQTRDRLAKLNKELAS-LEQNKNHINNELESKEEQLSSYEDKLFDVC 632
Query: 481 ---QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRD---LVTKNKELEGK 534
+ ++ LK+E+ + + L+ S + +LT EN+ + + + E +
Sbjct: 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE 692
Query: 535 VAQLSRRVEEMERGAQTENKP--EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
+ + ++ R A + K E+K + DE + + I+ E+ +L +
Sbjct: 693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNK 752
Query: 593 RRLLTVRSAELEYELEQRDYL---IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
+ + L+ ++E+++ L I + + A+ + ME +FQ E ER +
Sbjct: 753 LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIME-RFQMELKDVER---KI 808
Query: 650 ENLISQLKA-DLESNRAESNQSAHDEQ----ALQKEIKNLGSLLVDKDKTIGDLKAKIHK 704
++L+ DL+ + NQ ++Q + +I+ L+ D+ + I LK+K ++
Sbjct: 809 AQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
Query: 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764
K+++ I + ++ +Q+ +L + QS + IK+ + + +
Sbjct: 869 L-----------KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
Query: 765 QEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRH 824
EK + E+ + + + K+ +D+VN +K +++ H
Sbjct: 918 LEKDQQEKEELISSKETS-----------------------NKKAQDKVNDIKEKVKNIH 954
Query: 825 NVVRDLQLK--------LLQKGEMINNLKAQMEKSQQQQQQ 857
++D++ K L QK +N + AQ+E+ ++ Q++
Sbjct: 955 GYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEK 995
Score = 50.0 bits (119), Expect = 6e-06
Identities = 90/468 (19%), Positives = 193/468 (41%), Gaps = 39/468 (8%)
Query: 421 EQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA 480
++ ++W + K +Q +++ ++ K ETL + + Q + L
Sbjct: 158 QEDSNWPLSEGKALKQKFDEIFSATRYIKAL-ETLRQVRQTQGQKVQEHQMELKYLKQYK 216
Query: 481 QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSR 540
+ +I++ + + + +E+ LK +E ++K +L+ ++ L
Sbjct: 217 EKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKS 276
Query: 541 RVEEMER-GAQTENKPEEV-----KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
R ++ME+ ++ E K E+V + L L + +E+ E+ + E+EKL++ERR
Sbjct: 277 RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERR 336
Query: 595 LLTVRSAELEYELEQ--------------RDYLI-AVKTDGAEELQEKLDYMENKFQEES 639
LL EL E + RD LI ++ T + E+ + E + +
Sbjct: 337 LLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFH 396
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK----DKTI 695
+ ++ +QL ADL+S + A + ++ E K LG + K +K
Sbjct: 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADE---IRDEKKGLGRTIELKKEILEKKQ 453
Query: 696 GDLKAKIHKYEKYYAVMKE--------DRKTKEKDIAELKTKCEELTQQVTKLEADCQSY 747
+LK I + ++ + +E AE + E L ++V L+ + ++
Sbjct: 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNE-KAD 512
Query: 748 LNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPS-QYR 806
L+ + E ++ E K D+ +++ + + S E ++ +
Sbjct: 513 LDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK 572
Query: 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ 854
KQLED ++S E+ Q + + L +L + N++ ++E ++Q
Sbjct: 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
Score = 47.3 bits (112), Expect = 4e-05
Identities = 67/356 (18%), Positives = 146/356 (41%), Gaps = 25/356 (7%)
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLK----IQNLKQELSE 495
DL+ + + ++++ + +K ++ D K K ++N Q+++
Sbjct: 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR 758
Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENRDL---VTKNKELEGKVAQLSRRVEEMERGAQTE 552
+ K+ EE E + G + + VT + + ++ + R++ + Q
Sbjct: 759 DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGS 818
Query: 553 NKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDY 612
+ V+ + E + E ++IE R ++ E+ + L ++ EL+ E Q
Sbjct: 819 DLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878
Query: 613 LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL--ISQLKADLESNRAESNQS 670
+ + E+L E +++ +E E+ + L Q K +L S++ SN+
Sbjct: 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK 938
Query: 671 AHDE-QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTK 729
A D+ +++++KN+ + D + I D K + K KE ++ + +
Sbjct: 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGK-------------DDYLKQKETELNTVNAQ 985
Query: 730 CEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
EE + K+ D + I + ER + N L+ E+ LK V++EL +
Sbjct: 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT--LRKRENELKEVEEELKQ 1039
Score = 31.6 bits (71), Expect = 2.6
Identities = 79/464 (17%), Positives = 174/464 (37%), Gaps = 76/464 (16%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
I+ L++R + E D E E ++ + ++ E ++ Q + +RE+ E
Sbjct: 269 NEIKALKSRKKQMEK-DNSELELKMEKVFQGTDEQLNDLYHNHQ-------RTVREKERE 320
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAE---------------------------------D 466
++ QR+ K E + + + D
Sbjct: 321 LVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
Query: 467 DSEDETLNESAIEAQHKLKIQNLKQE---------------------LSELEAKYKSLSE 505
E +E I+ H L I+ + E E+ + K L
Sbjct: 381 GFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR 440
Query: 506 EHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLL 565
E L++ E + ++ + ++LEG ++ +E+ + + +K E+ ++L
Sbjct: 441 TIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLK 500
Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRD---YLIAVKTDGAE 622
E K E+ +LR +++ + T R+ ++ D + +K+ ++
Sbjct: 501 KEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSD 560
Query: 623 ELQEKLDYMENKFQEESLVYERLMSEK--ENLISQLKADLESNRAESNQSAHDEQALQKE 680
EL L Y NK Q E ++ + + +++L +L S N ++ ++ +++
Sbjct: 561 ELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
Query: 681 IKNLGSLLVD------KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTK---CE 731
+ + L D ++ + LK +I K K A++ + I +L + C
Sbjct: 621 LSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCC 680
Query: 732 ELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDR 775
+ Q+V + EA+ Q +++ +++ + E LK E R
Sbjct: 681 PVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 53.8 bits (130), Expect = 4e-07
Identities = 68/356 (19%), Positives = 136/356 (38%), Gaps = 52/356 (14%)
Query: 433 LREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSED-----ETLN--ESAIEAQHKLK 485
L+ +E LE + IE L + N++ E L+ S + + L+
Sbjct: 14 LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLR 73
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
+ K + LE K + EE E + ++KEL E +L + KELE ++
Sbjct: 74 EEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI---------- 123
Query: 546 ERGAQTENKPEEVKYLKSL-LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
E ++ + LD + + + E +KL E + V + E
Sbjct: 124 ----------ERLEPWGNFDLDLSLLLGFKYVSVFVGTVPE-DKLEELKLESDVENVEYI 172
Query: 605 YELEQRDYLIAV-----KTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD 659
+ Y++ V + EEL+ KL + + +EE E + E + + +++ +
Sbjct: 173 STDKGYVYVVVVVLKELSDEVEEELK-KLGFERLELEEEGTPSELI-REIKEELEEIEKE 230
Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
ES E + A + + +++ + +K K +K +A+ +
Sbjct: 231 RESLLEELKELAKKYLEELLALYEYLEIELER----AEALSKFLKTDKTFAI---EGWVP 283
Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIK-NMENDERSTKHNQEKLLKIYED 774
E + +LK ++ T +Y+ ++ + E +E TK K +K +E
Sbjct: 284 EDRVKKLKELIDKAT--------GGSAYVEFVEPDEEEEEVPTKLKNPKFIKPFES 331
Score = 36.8 bits (86), Expect = 0.059
Identities = 52/288 (18%), Positives = 98/288 (34%), Gaps = 75/288 (26%)
Query: 554 KPEEVKYLKSL-LDEAKEEF-----KEQTTEIEQLR--SEVEKLSEERRLLTVRSAEL-- 603
P +K + + L K+E + IE L+ E+L + R LLT S L
Sbjct: 2 APVRMKKVLIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDK 61
Query: 604 -----EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKA 658
R+ V EEL + ++ EE E+ + E E IS+L+
Sbjct: 62 LRSYLPKLNPLREEKKKVSVKSLEELIKDVE-------EELEKIEKEIKELEEEISELEN 114
Query: 659 DLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKT 718
+++ E + ++ G+ DL + KY +V
Sbjct: 115 EIKELEQEI-----------ERLEPWGNF---------DLDLSLLLGFKYVSV-FVGTVP 153
Query: 719 KEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEN----DERSTKHNQEKLLKIYED 774
++K EEL + + Y++T K + E+ LK
Sbjct: 154 EDKL--------EELKLESDVENVE---YISTDKGYVYVVVVVLKELSDEVEEELKKLGF 202
Query: 775 RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQ 822
+++E TPS+ +++++++ ++ E E
Sbjct: 203 ERLELEEE-----------------GTPSELIREIKEELEEIEKERES 233
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 51.9 bits (124), Expect = 2e-06
Identities = 86/474 (18%), Positives = 183/474 (38%), Gaps = 50/474 (10%)
Query: 417 KMFEEQQTDWENNVKKLREQH---EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETL 473
K EE + EN + E+ ++ L+ + + + E + K + ++ +
Sbjct: 117 KALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEM 176
Query: 474 NESAIEAQHKLKIQ-NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
A A +LK+ + +EL E + + E E L + D K K LE
Sbjct: 177 QCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLE 236
Query: 533 GKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
++ + + E VK +K L + E + E+ LR E KL
Sbjct: 237 EELKRYEQDA-------------EVVKSMKEQLLQIPELER----ELAALREENRKLRSM 279
Query: 593 RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
+ + EL +L+ R + +L+ + + +EN+ + ++L
Sbjct: 280 KEDNELLKEEL-EDLQSRLERFEKMREKLADLELEKEKLENE-----------LKSWKSL 327
Query: 653 ISQLKADLESNRAESNQSA---HDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY 709
+ + +L + S + ++E L+++ ++ S + T+ L+ + K
Sbjct: 328 LQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEI 387
Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLL 769
+K+ + + + L+ + +T++ L A SY + E E S K L
Sbjct: 388 LELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSY-----DKELTETSVSGQLMKRL 442
Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
+ ED ++ VQ LA+M E + + Q +D+ N+L+ E++ +
Sbjct: 443 EEAEDLVQKVQSHLAKM---------ENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVS 493
Query: 830 LQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDT 883
+ L E N L+ ++E ++++ + R LE ++ + + + T
Sbjct: 494 NERLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRT 547
Score = 41.5 bits (97), Expect = 0.002
Identities = 90/462 (19%), Positives = 180/462 (38%), Gaps = 45/462 (9%)
Query: 413 EDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDET 472
E+ R+ EE Q + KKL+ E K + + ++ E D+E
Sbjct: 195 EELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIK----HLEEELKRYEQDAEVVK 250
Query: 473 LNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
+ + L+I L++EL+ L + + L ED +EL L K E
Sbjct: 251 SMKEQL-----LQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMRE 305
Query: 533 GKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK---EQTTEIEQLRSEVEKL 589
K+A L E++E E+K KSLL + + + + I L++E +L
Sbjct: 306 -KLADLELEKEKLE---------NELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQL 355
Query: 590 SEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
E+ ++ + +LE L+Q EL++KL+ ++ L + K
Sbjct: 356 KEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKA--LVRRLQRRLTLVTK 413
Query: 650 ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY 709
E L+A L S E +++ Q L K ++ L+ + ++ ++ + E+
Sbjct: 414 E--RDGLRAILNSYDKELTETSVSGQ-LMKRLEEAEDLVQKVQSHLAKMENQLSELEEDV 470
Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLL 769
K+ T E +I LK + + ++ ++ + I+ +E + + + L
Sbjct: 471 GQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLE 530
Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
E + K + S S+ + + + +L+AE E+ ++
Sbjct: 531 MKLEHLCLQGDYNASRTKVLHM------SLNPASEAEQIAKQTIEALQAECEKLKERLQA 584
Query: 830 LQLKLLQKGEM------------INNLKAQMEKSQQQQQQQR 859
L+ Q G++ I LK Q+E ++++ Q+ +
Sbjct: 585 LEEGKSQPGDLEKAVGSHISSKEIAQLKKQVESAEKKNQRLK 626
Score = 34.5 bits (79), Expect = 0.29
Identities = 38/202 (18%), Positives = 82/202 (40%), Gaps = 14/202 (6%)
Query: 573 KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME 632
Q E+ + +S++ +L E + + ELE++ +A + + +L+
Sbjct: 57 LLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRL 116
Query: 633 NKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692
+E E +E E LK L++ + LQ E ++ +
Sbjct: 117 KALEELEKKAENEAAEAEEEAKLLKDKLDA----------ESLKLQNEKEDQLK---EAK 163
Query: 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIK 752
++I +K + + + + K E ++ EL+ + EE +++ + E QS +
Sbjct: 164 ESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQA 223
Query: 753 NMENDERSTKHNQEKLLKIYED 774
+ ++ KH +E+ LK YE
Sbjct: 224 SSADNSVKIKHLEEE-LKRYEQ 244
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 50.1 bits (120), Expect = 2e-06
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG---KVAQLSR 540
L IQ L E LE + K + + + EL N+ L ELE +V+QL
Sbjct: 10 LAIQKLDLEKDRLEPRIKEIRKALKKA---KAELEALNKALEALEIELEDLENQVSQLES 66
Query: 541 RVEEM-ERGAQTENKPEEVKYLKSL------LDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
++E+ ER + E K VK + L + AKE E+ +L E+EKL +E
Sbjct: 67 EIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126
Query: 594 RLLTVRSAELE---YELEQRDYL-IAVKTDGAEELQEKLDYMENKFQEESL-VYERLMSE 648
L R LE E E R +A + +EL K + ++ K E L YER+
Sbjct: 127 EDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186
Query: 649 KENL 652
K+ +
Sbjct: 187 KKGV 190
Score = 37.3 bits (87), Expect = 0.020
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)
Query: 692 DKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTI 751
D L+ +I + K K + + K + L+ + E+L QV++LE++ Q I
Sbjct: 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75
Query: 752 KNMEN--DERSTKHNQEKLLK---IYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYR 806
K E + L I ++R+ +++DELAE+ K E
Sbjct: 76 KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL-- 133
Query: 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMI 841
++LE + +A LE+ +R+ +L K E +
Sbjct: 134 ERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 50.8 bits (122), Expect = 3e-06
Identities = 65/361 (18%), Positives = 136/361 (37%), Gaps = 57/361 (15%)
Query: 495 ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
EL + + E + K K+ + LV N ELE ++ E E +
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQ---LVQANAELE------EQKRAEAEARTALKQA 654
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTE-IEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
+++ L++ K++ + E +Q +++ +L + + L +Q+ +L
Sbjct: 655 RLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQL---------LEQQQAFL 705
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
E L++ + + + V E + + +S +
Sbjct: 706 --------EALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKA-RLKELK 756
Query: 674 EQALQKEIKNLG---SLLVDKDKTIGDLKAKI-------HKYEKYYAVMKED-----RKT 718
+Q + E+ +L + + + + I +L+ I + +Y A M+E
Sbjct: 757 KQYDR-ELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLR 815
Query: 719 KEKD-----IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYE 773
+E+ + EL++ EEL Q++T+L D K +E ER Q L
Sbjct: 816 EERPNLAIQLRELESSAEELQQELTRLIKD---TKLRRKKLE-QERKALEKQLDQLDELL 871
Query: 774 DRLKAVQDELAEMK----CAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
L+ +LAE+K Q + S+ +++++ + LK LE+ V++D
Sbjct: 872 RGLRDEMRQLAELKEPANANQAEGSISERLDQLEEFKRKRKRLSGDLKKFLERFDGVIKD 931
Query: 830 L 830
Sbjct: 932 H 932
Score = 43.9 bits (104), Expect = 4e-04
Identities = 99/533 (18%), Positives = 192/533 (36%), Gaps = 82/533 (15%)
Query: 404 IREEYREVQEDF--RKMFEEQ----QTDWENNVKKLREQHEEDLERQRKFYKTQIETLMT 457
+ E ++QEDF E + + + ++L E+ EE E + + + Q+ TL
Sbjct: 244 VAPEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNR-LRQQLRTLED 302
Query: 458 LVKNQQAEDDSEDETLNES---------AIEAQH----KLKIQNLKQELSELEAKYKSLS 504
+K + E + E N +E Q I+ L+ +L +L S+
Sbjct: 303 QLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLP----SIR 358
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKYLKS 563
E E++ +L LT +++D+ K + L+ K+ + + ++E+ + EE K+
Sbjct: 359 SELEEVEARLDALTGKHQDVQRKYERLKQKIKE--QLERDLEKNNERLAAIREEKDRQKA 416
Query: 564 LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
++E + + Q + QL + + +EE L +R L+ L+ E
Sbjct: 417 AIEEDLQALESQLRQ--QLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQL-EI 473
Query: 624 LQEKLDYMENKFQEESLVYERLMSEKENLISQ----LKADLESNRAESNQSAHDEQALQK 679
E L+ + + ++ E+L SE L + L+A + R ++ +
Sbjct: 474 NDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQ 533
Query: 680 EIKNLGSLL-------VDKDKTIG-----------DLKAKIHKYEKYYAVMKEDRKTKEK 721
GSLL +++IG DL ++ + + +
Sbjct: 534 LSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRL 593
Query: 722 DIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND----------------ERSTKHNQ 765
D+ + EL +++ + E QS + K E E T Q
Sbjct: 594 DVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQ 653
Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQL---KPSLEASAATPSQYRKQLEDQVNSLKAEL-E 821
+L RL+ Q L + + K E KQL +Q + L +
Sbjct: 654 ARLDLQ---RLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKD 710
Query: 822 QRHNVVRDLQLKLLQ----KGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMA 870
+ + K + L A +E ++ Q + + LK L+ Q
Sbjct: 711 DFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKAR---LKELKKQYD 760
Score = 43.9 bits (104), Expect = 5e-04
Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 35/276 (12%)
Query: 431 KKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLK 490
+L EQ + E + + + L L QQ+ D +E + Q +
Sbjct: 635 AELEEQKRAEAEARTALKQAR-LDLQRLQNEQQSLKD---------KLELAIAERKQQAE 684
Query: 491 QELSELEAKYKSLSEEHEDMSGKLKELTRENR-DLVTKNKELEG----KVAQLSRRVEEM 545
+L +L+A+ K L E+ + LK+ RE R + + K + +EG ++AQLS +E
Sbjct: 685 TQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAA 744
Query: 546 ERGAQTENKPEEVKYLKSL---------LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
A+ K + +Y + L + E K + +E T IE++ ++ E R +
Sbjct: 745 RTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFM 804
Query: 597 TVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQL 656
+ E+R L +L +E+ +E RL+ + + +L
Sbjct: 805 QETWLHRDSLREERP-----------NLAIQLRELESSAEELQQELTRLIKDTKLRRKKL 853
Query: 657 KADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692
+ + ++ + +Q + L+ E++ L L +
Sbjct: 854 EQERKALEKQLDQLDELLRGLRDEMRQLAELKEPAN 889
Score = 43.1 bits (102), Expect = 8e-04
Identities = 79/479 (16%), Positives = 180/479 (37%), Gaps = 47/479 (9%)
Query: 420 EEQQTDWENNVKKLREQH---EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDE---TL 473
E+Q + + +LR+Q E+ L+ R ++ + ++E + ++
Sbjct: 280 AEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAF 339
Query: 474 NESAIE--AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT--RENRDLVTKNK 529
++ IE ++ +++ EL E+EA+ +L+ +H+D+ K + L + + +
Sbjct: 340 EDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQ----LER 395
Query: 530 ELEGKVAQLSRRVEEMERGAQTENKPEEV--KYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
+LE +L+ EE +R + + L+ L+ K EF E+ E+E ++
Sbjct: 396 DLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLK 455
Query: 588 KLS-----EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQE-----KLDYMENKFQE 637
+ L + + E Q + A + + + D Q
Sbjct: 456 QRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQR 515
Query: 638 ESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGD 697
+L + L QL S A + +++G ++ + D
Sbjct: 516 AERRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWE------ESIGKVISPELLERTD 569
Query: 698 LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND 757
L ++ + + + D+ + EL +++ + E QS + K E
Sbjct: 570 LDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQ 629
Query: 758 ERSTKHNQEKLLKIYEDRLKAVQ---DELAEMKCAQLKPSLEASAATPSQYRKQLEDQVN 814
E+ + + A++ +L ++ Q + A + ++Q E Q+
Sbjct: 630 LVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER-KQQAETQLR 688
Query: 815 SLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKG-LENQMAKI 872
L A+L+Q L Q+ + LK + + ++ + ++G L+NQ+A++
Sbjct: 689 QLDAQLKQL----------LEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQL 737
Score = 38.9 bits (91), Expect = 0.014
Identities = 57/312 (18%), Positives = 120/312 (38%), Gaps = 56/312 (17%)
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
E ++ + EQL S +L L L E E+R + L+++L
Sbjct: 246 PEIEKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQ-------EAKNRLRQQLR 298
Query: 630 YMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE---QALQKEIKNLGS 686
+E++ +E + +S ++ +++LE E + A ++ + LQ ++ L S
Sbjct: 299 TLEDQLKEARDELNQELSAANAKLAADRSELE--LLEDQKGAFEDADIEQLQADLDQLPS 356
Query: 687 LLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQS 746
+ + ++ L A LT + ++ +
Sbjct: 357 IRSELEEVEARLDA--------------------------------LTGKHQDVQRKYER 384
Query: 747 YLNTIKNMENDERSTKHNQEKLLKIYE--DRLKAVQDELAEMKCAQLKPSLEASAATPSQ 804
IK + N E+L I E DR KA +E + +QL+ LEA ++
Sbjct: 385 LKQKIKEQLERDLEK--NNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNE 442
Query: 805 YRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKG 864
+LE ++ LK + + + E + +EK+Q++Q+Q + ++
Sbjct: 443 EEYELELRLGRLKQ---RLDSATATPEEL-----EQLEINDEALEKAQEEQEQAEANVEQ 494
Query: 865 LENQMAKINIDR 876
L++++ ++ R
Sbjct: 495 LQSELRQLRKRR 506
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 48.5 bits (116), Expect = 3e-06
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
+ ++ L+QEL+EL+ + L E+ ++ + +EL +E L + + L+
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQ---------- 114
Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRL 595
+E+ R Q E L E +EE E E E L +E E+L E +
Sbjct: 115 KELARIKQLSANAIE---LDEENRELREELAELKQENEALEAENERLQENEQR 164
Score = 38.5 bits (90), Expect = 0.007
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 471 ETLNESAIEAQHKLK-----IQNLKQELSELEAKYKSLSEEHEDM---SGKLKELTRENR 522
L E E Q +L Q LKQELS LEA+ + L +E + S EL ENR
Sbjct: 76 AELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENR 135
Query: 523 DLVTKNKELEGKVAQLSRRVEEMER 547
+L + EL+ + L E ++
Sbjct: 136 ELREELAELKQENEALEAENERLQE 160
Score = 31.5 bits (72), Expect = 1.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE--QRDYLIAVKT 618
L+ L E +EE E ++ +L+ E ++L +E L L+ EL ++ A++
Sbjct: 71 LQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIEL 130
Query: 619 D-GAEELQEKLDYMENKFQEESLVYERLMSEKEN 651
D EL+E+L ++ + + ERL ++
Sbjct: 131 DEENRELREELAELKQENEALEAENERLQENEQR 164
Score = 31.1 bits (71), Expect = 1.8
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 568 AKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEK 627
A+E E E+ +L+ E+ +L E+ AEL+ E ++ ++ E LQ++
Sbjct: 64 ARERLPELQQELAELQEELAELQEQ-------LAELQQENQELKQELSTLEAELERLQKE 116
Query: 628 LDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAESNQSAHDEQ 675
L + ++ S L E L +++LK + E+ AE+ + +EQ
Sbjct: 117 LARI----KQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 30.7 bits (70), Expect = 2.4
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK---AKIHKYEKYYAV 711
+L+ +L + E + LQ+E + L L + + L+ A+I +
Sbjct: 70 ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIE 129
Query: 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEAD 743
+ E+ + +++AELK + E L + +L+ +
Sbjct: 130 LDEENRELREELAELKQENEALEAENERLQEN 161
Score = 30.7 bits (70), Expect = 2.4
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
++ +L + + E++ + E++ L+ E K+E E+E+L+ E+ ++
Sbjct: 67 RLPELQQELAELQ--EELAELQEQLAELQQENQELKQELSTLEAELERLQKELARI---- 120
Query: 594 RLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVY 642
+ L+ + EL+ E + +A E L+ + + ++ Q +Y
Sbjct: 121 KQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRWFLY 169
Score = 30.0 bits (68), Expect = 3.8
Identities = 16/102 (15%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAV 779
++++AEL+ + EL +Q+ +L+ + Q + +E + + ++ ++ + ++
Sbjct: 72 QQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELD 131
Query: 780 QDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELE 821
++ +L+ L +L+ + +L+AE E
Sbjct: 132 EEN------RELREELA-----------ELKQENEALEAENE 156
Score = 30.0 bits (68), Expect = 4.8
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 449 KTQIETLMTLVKNQQAEDDSEDETLNESAIEAQ-HKLKIQNLKQELSELEAKY---KSLS 504
+ ++ L + Q E E L E E Q K ++ L+ EL L+ + K LS
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
++ + +EL E +L +N+ LE + +L +
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 29.6 bits (67), Expect = 5.4
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE---IEQLRSE 585
EL+ ++A+L + E++ Q +E + LK L + E + E I+QL +
Sbjct: 69 PELQQELAELQEELAELQ--EQLAELQQENQELKQELSTLEAELERLQKELARIKQLSAN 126
Query: 586 VEKLSEERRLLTVRSAELEYELEQ 609
+L EE R L AEL+ E E
Sbjct: 127 AIELDEENRELREELAELKQENEA 150
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 50.0 bits (119), Expect = 6e-06
Identities = 100/491 (20%), Positives = 187/491 (38%), Gaps = 42/491 (8%)
Query: 404 IREEYREVQEDFRKMFEEQQTDWE-----NNVKKLREQHEEDLERQRKFYKTQIETLMTL 458
+E+ R QE+ + Q E + +L+++ E+ + Q+E
Sbjct: 58 WKEQLRVTQEENQHAQLTVQALQEELKSQRELNRLQQKLEKSGNETGELQ--QLEKSEGQ 115
Query: 459 VKNQQAEDD---SEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
QAE + E L ++ + Q L+++ L+Q L + + K L E + K
Sbjct: 116 FSRIQAERERQAMELFLLRDTLEKLQ--LRMERLQQTLDARDEEIKKLLEMLQSKGLSAK 173
Query: 516 ELT---------RENRDLVTKNKE-LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLL 565
RE D + + LE K + EE+ + Q E + + + L+
Sbjct: 174 AEEEDSERLGRIREAEDQQSHLEVLLEQKEKEHMMLREEIHQKLQMERDDAKTEASQKLI 233
Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE-QRDYLIAVKT--DGAE 622
DE + KE +E+ +E+ +L L+ E+E +R L A+K D A
Sbjct: 234 DEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDRAA 293
Query: 623 ELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIK 682
+ + Q E S+ + +LK DL E + AL+ E++
Sbjct: 294 QELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYELE 353
Query: 683 NLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742
+ L K ++ + + Y M++ + E+ + L+ K E L + +
Sbjct: 354 RKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRR--- 410
Query: 743 DCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATP 802
ER K +E+L + D E E A+ + +E
Sbjct: 411 --------------KERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQR 456
Query: 803 SQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPL 862
+ + +++ + K E E V++LQLKL ++ + LK ++ K Q +QRS L
Sbjct: 457 DRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDL 516
Query: 863 KGLENQMAKIN 873
+ ++ KI
Sbjct: 517 ERAHIELEKIR 527
Score = 42.3 bits (99), Expect = 0.001
Identities = 89/527 (16%), Positives = 191/527 (36%), Gaps = 33/527 (6%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
E I+ L L K E E R ED + E E LRE+ +
Sbjct: 156 EEIKKLLEMLQSKGLSAKAEEEDSERLGRIREAEDQQSHLEVLLEQKEKEHMMLREEIHQ 215
Query: 440 DLERQRKFYKTQ-IETLMTLVKNQQA--EDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
L+ +R KT+ + L+ + E E ++++ + + E+
Sbjct: 216 KLQMERDDAKTEASQKLIDEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEV 275
Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME--------RG 548
EA+ +L+ +EL+R+ +L+ ELE Q S + ++
Sbjct: 276 EAERSALAAMKAKCDRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAE 335
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE----RRLLTVRSAELE 604
+ EV L+ L+ ++T ++ + E + E R +L
Sbjct: 336 QEKAILQTEVDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLR 395
Query: 605 YELEQRDYLIAVKTDGAEELQE-----KLDYMENKFQEESLVYERLMSEKENLISQLK-- 657
++ + L L+E + + E+ ++EKE +I +LK
Sbjct: 396 VLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQ 455
Query: 658 -ADLESNRAESNQSAHDE-QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715
E E ++ E + L++E++NL L +++ + LK ++ K + D
Sbjct: 456 RDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSD 515
Query: 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLN------TIKNMENDERSTKHNQEKLL 769
+ ++ +++ K E+L +++ +L A+ +S D ++ ++LL
Sbjct: 516 LERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRLL 575
Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
E + D EM+ +L LE + ++ +++ E + + +
Sbjct: 576 DRLEKAEQERDDT--EMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEAER 633
Query: 830 LQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDR 876
L+ K + E + ++ LE+ + ++ +R
Sbjct: 634 LE-KSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAER 679
Score = 41.9 bits (98), Expect = 0.002
Identities = 72/399 (18%), Positives = 151/399 (37%), Gaps = 50/399 (12%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
+ L+ EL + + + E D+ + ++ E K+ L +++E +
Sbjct: 345 VDALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENL 404
Query: 546 ERGAQTENK--PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
+ + + + EE + L+SL + ++E+ +E E++ E RL R +
Sbjct: 405 QETFRRKERRLKEEKERLRSLQTDTNT--DTALEKLEKALAEKERIIE--RLKEQRDRDE 460
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLIS-QLKADLES 662
YE E+ + E+L+E++ ++ K E L E L E L S QLK +
Sbjct: 461 RYEQEEFETY----KKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDL 516
Query: 663 NRAE----------------------SNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKA 700
RA + +SA A+ + + L
Sbjct: 517 ERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVDRLLD 576
Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
++ K E+ +R E + L + E+ + +TK + + E
Sbjct: 577 RLEKAEQ-------ERDDTEMEAGRLAKELEKAQRHLTKQQ----------EKTEATRIE 619
Query: 761 TKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAEL 820
+ +LL+ E K+ +E + Q+ + A+ + ++LE + L+AE
Sbjct: 620 FERKSAELLEEAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAER 679
Query: 821 EQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQR 859
EQ + Q L++ + +N +A+ K ++ ++ +
Sbjct: 680 EQLVAQLEKSQQSLMEFQQELNAAEAERRKHLEENRELK 718
Score = 38.8 bits (90), Expect = 0.015
Identities = 57/335 (17%), Positives = 128/335 (38%), Gaps = 23/335 (6%)
Query: 401 EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK 460
+ R + R ++E+ ++ Q + + E+ + ER + K Q + +
Sbjct: 405 QETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRD------R 458
Query: 461 NQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRE 520
+++ E + + E K ++QNL+ +LSE E L E++S ++
Sbjct: 459 DERYEQEEFETYKKEFE---DLKEEVQNLQLKLSEREL---QLELLKEEVSKLASNQLKQ 512
Query: 521 NRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIE 580
DL + ELE + + +E++R + + + ++ + E++
Sbjct: 513 RSDLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEVD 572
Query: 581 QLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESL 640
+L +EK +ER + + L ELE+ + + + E + + + + EE+
Sbjct: 573 RLLDRLEKAEQERDDTEMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEAE 632
Query: 641 VYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKA 700
E+ +E+E L R + A ++ L D + + +
Sbjct: 633 RLEKSEAEEETL-----------RQSTQIGHAQAAAHNHIEHHVQKLESDLKQLRAEREQ 681
Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQ 735
+ + EK + E ++ AE + EE +
Sbjct: 682 LVAQLEKSQQSLMEFQQELNAAEAERRKHLEENRE 716
Score = 30.4 bits (68), Expect = 5.8
Identities = 66/365 (18%), Positives = 142/365 (38%), Gaps = 8/365 (2%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
+E++ + ++ +R+++E+ + R K IE L + ++ E E L +
Sbjct: 370 QEEKATYAGEIEDMRDRYEKTERKLRVLQKK-IENLQETFRRKERRLKEEKERLRSLQTD 428
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
++ L++ L+E E + L E+ + +E + + ++L+ +V L
Sbjct: 429 TNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKK---EFEDLKEEVQNLQ 485
Query: 540 RRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE--RRLLT 597
++ E R Q E EEV L S + + + + E+E++R + EKL +E R
Sbjct: 486 LKLSE--RELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIREKHEKLEKELKRLRAN 543
Query: 598 VRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLK 657
SA+ ++ + GA ++L K ++E E + + +
Sbjct: 544 PESADRGSAVDAGTSRSRADSAGARNEVDRLLDRLEKAEQERDDTEMEAGRLAKELEKAQ 603
Query: 658 ADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRK 717
L + ++ + + + E+ L + L+ A
Sbjct: 604 RHLTKQQEKTEATRIEFERKSAELLEEAERLEKSEAEEETLRQSTQIGHAQAAAHNHIEH 663
Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLK 777
+K ++LK E Q V +LE QS + + + E + + E+ ++ ++ L
Sbjct: 664 HVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQELNAAEAERRKHLEENRELKQEALL 723
Query: 778 AVQDE 782
A E
Sbjct: 724 AAISE 728
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 49.2 bits (118), Expect = 7e-06
Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 36/224 (16%)
Query: 403 QIREEYREVQE-DFRKMFEEQQTD-WENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK 460
+IRE +++Q D + +QQ + N+++ R+++ E++ R++ Y +E T+ K
Sbjct: 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI-K 233
Query: 461 NQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEH------------- 507
+ E E L + L L +++++K + +
Sbjct: 234 AEIEELTDELLNLVMDIEDPSAALN--KLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT 291
Query: 508 ----------EDMSGKLKELTRENRDLVTKNKELEGKV---AQLSRRVEEMERGAQTENK 554
+ KLKEL L T ELE + + S+++ E++ T +
Sbjct: 292 QQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ 351
Query: 555 P-----EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
++ K +K+ ++E + EF + E+ +L+ E++K+ + +
Sbjct: 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395
Score = 38.8 bits (91), Expect = 0.012
Identities = 50/265 (18%), Positives = 101/265 (38%), Gaps = 33/265 (12%)
Query: 585 EVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEES--LVY 642
++ LSE +L + EL +++ D I + +Q+++ NK EE
Sbjct: 161 DISVLSEMDKLNKDKIRELNQQIQTLDMKI-------DHIQQQIK-TYNKNIEEQRKKNG 212
Query: 643 ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKI 702
E + + K+N +L + ++ +AE + + L +I++ + L + +K+KI
Sbjct: 213 ENI-ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271
Query: 703 HKYEKYYAVMKEDR----------KTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIK 752
+++K M E I ++K K +EL + KL+ L I
Sbjct: 272 EQFQK-VIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLD-TAIDELEEIM 329
Query: 753 NMENDERSTKH-------NQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQY 805
+ N++ ++ L D+ K V+ + E++ A
Sbjct: 330 DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE--FVDNAEELAKLQDE 387
Query: 806 RKQLEDQVNSLKAELEQRHNVVRDL 830
++ + L E R +V DL
Sbjct: 388 LDKIVKTKSELVKEKYHRG-IVTDL 411
Score = 31.5 bits (72), Expect = 2.6
Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 54/236 (22%)
Query: 681 IKNLGSLLVDKDKTIGDLKAKIHKYEKYY----AVMKEDRKTKEKDIAEL-------KTK 729
I+ L + D I ++ +I Y K E+ K+ EL K +
Sbjct: 176 IRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAE 235
Query: 730 CEELTQQVTKLEADCQSYLNTIK--NMENDERSTKHNQ-EKLLKIYED------------ 774
EELT ++ L D + + N + +K Q +K++K+YE
Sbjct: 236 IEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQIS 295
Query: 775 ----RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLE--DQVNSLKAELEQRHNVVR 828
R+ ++D+L E++ K D++ + E ++ +
Sbjct: 296 EGPDRITKIKDKLKELQ---------------HSLEKLDTAIDELEEIMDEFNEQSKKLL 340
Query: 829 DLQLKL-LQKGEMIN------NLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
+L+ K+ K +I +KA +E+ Q + L L++++ KI +S
Sbjct: 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKS 396
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 49.6 bits (119), Expect = 7e-06
Identities = 75/412 (18%), Positives = 169/412 (41%), Gaps = 46/412 (11%)
Query: 386 EARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQR 445
EA++ E + + K+ E +I + E+++ ++ + + + KKL ++++ +L
Sbjct: 94 EAQIEELKK-ELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEAL 152
Query: 446 KFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE 505
K + L+K ++ + L+ ++A+ K + K EL+ L E
Sbjct: 153 KGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTLSVIDFDE 212
Query: 506 EHED------MSGK----LKELTRE--NRDLVTKNKELEGKVAQ-------LSR-RVEEM 545
+ + G + EL N D V + E + ++ R E+
Sbjct: 213 IEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTITEERKAEL 272
Query: 546 ERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEY 605
E EE + L L+E ++++ IE+ E+E + + + + E +
Sbjct: 273 EAHFD-----EEYQELIEQLEELIDKYESH---IEKALEELESILDTEKENS----EFKL 320
Query: 606 ELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLES-NR 664
++E+ L+ + E+ +KL E K ++ S E + +LI + +++ N
Sbjct: 321 DVEELKALLEALEEILEKNLQKL---EEKLKDPSTSIE--LESITDLIESINDIIDAINE 375
Query: 665 --AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKD 722
E N+ + + + + K L + + +LK I Y+K +++ + EK+
Sbjct: 376 LIREHNEKIDNLKKEKNKAKKKLWLHL-----VAELKEDIDAYQKEKKGLEKAINSLEKE 430
Query: 723 IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED 774
I +L+ + + L +++ +LE + T + ++ +L K ED
Sbjct: 431 IKQLEAEIKALEKEIKELEKQLTNIEPTADEINKLLKAYGFGNFELEKEAED 482
Score = 40.8 bits (96), Expect = 0.004
Identities = 71/434 (16%), Positives = 155/434 (35%), Gaps = 102/434 (23%)
Query: 472 TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK----ELTRENRDLVTK 527
TL E IE + +I+ LK+EL +LE K + L E E +L+ + + + K
Sbjct: 85 TLGEENIEIE--AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAK 142
Query: 528 NKELEGKVAQ---------LSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
+ A + ++E++ + ++ LK+ + K +
Sbjct: 143 KYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELAL 202
Query: 579 IE---QLRSEVEKLSEERRLLTVRS----AELEYELEQRDYL---IAVKTDGA------- 621
+ E+E+ + + S +EL L D++ + +G
Sbjct: 203 LTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQ 262
Query: 622 ---EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
EE + +L E F EE E + +L ES+
Sbjct: 263 TITEERKAEL---EAHFDEEY-------QELIEQLEELIDKYESHI-------------- 298
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
++ ++D +K + K + + + ++E EK++ +L+ K ++ + +
Sbjct: 299 EKALEELESILDTEKENSEFKLDVEELKALLEALEE---ILEKNLQKLEEKLKDPSTSIE 355
Query: 739 --KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLE 796
+ +S + I + R +HN+ D LK +++
Sbjct: 356 LESITDLIESINDIIDAINELIR--EHNE------KIDNLKKEKNKA------------- 394
Query: 797 ASAATPSQYRKQLE-DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQ 855
+K+L V LK +++ + L+ IN+L+ ++++ + +
Sbjct: 395 ---------KKKLWLHLVAELKEDIDAYQKEKKGLEKA-------INSLEKEIKQLEAEI 438
Query: 856 QQQRSPLKGLENQM 869
+ +K LE Q+
Sbjct: 439 KALEKEIKELEKQL 452
Score = 31.9 bits (73), Expect = 2.1
Identities = 46/248 (18%), Positives = 100/248 (40%), Gaps = 45/248 (18%)
Query: 386 EARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHE-----ED 440
E R AE E +E++ I E+ E+ + + E+ + E+ + +E E E+
Sbjct: 266 EERKAELEAHFDEEYQELI-EQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEE 324
Query: 441 LERQRKFYKTQIETLMTLVKNQQAE-------DDSED--ETLNES-----AIEAQHKLKI 486
L+ + + +E + ++ + + + D E++N+ + +H KI
Sbjct: 325 LKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKI 384
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
NLK+E ++ + K ++ + +E + L LE ++ QL ++
Sbjct: 385 DNLKKEKNKAKKKLWL--HLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKA-- 440
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
L++ +E ++Q T IE +++++ + + ELE E
Sbjct: 441 ------------------LEKEIKELEKQLTNIEPT---ADEINKLLKAYGFGNFELEKE 479
Query: 607 LEQRDYLI 614
E + Y I
Sbjct: 480 AEDKGYRI 487
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 48.8 bits (116), Expect = 1e-05
Identities = 50/307 (16%), Positives = 109/307 (35%), Gaps = 6/307 (1%)
Query: 378 PYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQ--QTDWENNVKKLRE 435
+ L L E K YQ++E+ +E+ + + + + + LR+
Sbjct: 190 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRD 249
Query: 436 QHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSE 495
+ EE +++ K E ++ V + E++ E + E + + + E
Sbjct: 250 EQEEIESSKQELEK--EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307
Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP 555
+ + K E + + E E K ++ R EE E + +
Sbjct: 308 RRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQE 367
Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA 615
+ + + LL + K E + ++ + E+E +EE + + E E +
Sbjct: 368 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKK 427
Query: 616 VKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQ 675
+ EEL+E L+ + K EE E + L +L+ + + + +
Sbjct: 428 EELKIVEELEESLETKQGKLTEEKE--ELEKQALKLLKDKLELKKSEDLLKETKLVKLLE 485
Query: 676 ALQKEIK 682
L+ +
Sbjct: 486 QLELLLL 492
Score = 47.7 bits (113), Expect = 3e-05
Identities = 62/357 (17%), Positives = 139/357 (38%), Gaps = 14/357 (3%)
Query: 427 ENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK-----NQQAEDDSEDETLNESAIEAQ 481
+ KL+EQ ++ LE + K ++E L N++ D ++ +E
Sbjct: 197 KLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIES 256
Query: 482 HKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRR 541
K +++ ++ L+++ + K +E + +LK L +E +L ++ +LE + +
Sbjct: 257 SKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK 316
Query: 542 VEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSA 601
++E E + + +E+K K ++E ++E KE + E E E+L + + L
Sbjct: 317 LKESE--KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Query: 602 ELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE 661
EL + + ++ EE E + E + + + E+ + + +E
Sbjct: 375 ELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVE 434
Query: 662 SNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK 721
+ Q ++ L + + K ++ K E K + ++
Sbjct: 435 ELE-------ESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQL 487
Query: 722 DIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKA 778
++ L+ K EE +Q+ +K L IK+ + + L + K
Sbjct: 488 ELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKV 544
Score = 42.3 bits (99), Expect = 0.001
Identities = 60/329 (18%), Positives = 125/329 (37%), Gaps = 16/329 (4%)
Query: 465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHED-----MSGKLKELTR 519
E + E L + E ++ ++ +L EL+ + L E+ + + EL
Sbjct: 168 EKRKKKERLKKLIEETENLAELII---DLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
EN + K E ++ L + + E+ +E++ + +L + +E KE+ E
Sbjct: 225 ENLLYLDYLKLNEERIDLLQE--LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEK 282
Query: 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAV-KTDGAEELQEKLDYMENKFQEE 638
+ E++ L++E L + E +R + K +E+ +KL+ K +EE
Sbjct: 283 KLQEEELKLLAKEEEEL-----KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEE 337
Query: 639 SLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDL 698
E+ + E E + + E + E+ L + K L K +
Sbjct: 338 IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 397
Query: 699 KAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDE 758
++ EK ++ E + +E + E K + ++ +++ + Q L K +
Sbjct: 398 LELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQ 457
Query: 759 RSTKHNQEKLLKIYEDRLKAVQDELAEMK 787
+ LK ED LK + +
Sbjct: 458 ALKLLKDKLELKKSEDLLKETKLVKLLEQ 486
Score = 40.0 bits (93), Expect = 0.007
Identities = 60/441 (13%), Positives = 155/441 (35%), Gaps = 12/441 (2%)
Query: 432 KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQ 491
+ +I+ + L + +A +++++ +E K
Sbjct: 580 TFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLL 639
Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551
E ++ + E+ + EL +L + + + + + E +
Sbjct: 640 ESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQ 699
Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRD 611
E ++ + +K L + K E +E + Q + + ++ E E E +
Sbjct: 700 EEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLK 759
Query: 612 YLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSA 671
+ L+EK E + +E +LKA E RA +
Sbjct: 760 KEEEEEEKSELSLKEKEL-------AEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812
Query: 672 HDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCE 731
+ + L++E + K++ + +L ++ + +K + +E+ + E++I + + E
Sbjct: 813 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 872
Query: 732 ELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQL 791
L ++ E + +E+ + +E + +D L ++ E + A+
Sbjct: 873 LLLKEEELEEQK-----LKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEE 927
Query: 792 KPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS 851
L + P + + D+ + E+ + L L + G + A+ E+
Sbjct: 928 AIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEK 987
Query: 852 QQQQQQQRSPLKGLENQMAKI 872
+++ + + LE + ++
Sbjct: 988 EERYNKDELKKERLEEEKKEL 1008
Score = 34.2 bits (78), Expect = 0.37
Identities = 42/252 (16%), Positives = 97/252 (38%), Gaps = 12/252 (4%)
Query: 616 VKTDGAEELQEKL-----------DYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
K E L++ + D E K QE L + + + + + E N
Sbjct: 168 EKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENL 227
Query: 665 AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIA 724
+ +E+ + + L + + + +L+ + + KE+ K K+
Sbjct: 228 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEE 287
Query: 725 ELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKA-VQDEL 783
ELK +E + ++L + ++ + ++ E+ K +++L K E+ + + +
Sbjct: 288 ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKE 347
Query: 784 AEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINN 843
E+K + E + + E+ + K E E+ + + + +L K E
Sbjct: 348 LEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKE 407
Query: 844 LKAQMEKSQQQQ 855
K +E S+Q++
Sbjct: 408 AKLLLELSEQEE 419
Score = 33.0 bits (75), Expect = 0.94
Identities = 38/261 (14%), Positives = 92/261 (35%), Gaps = 3/261 (1%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
E E ++E + + E E Q + + ++ + E +L+E+ +
Sbjct: 791 EEKEEKLKAQEEELRALEEELKEEA-ELLEEEQLLIEQEEKIKEEELEELALELKEEQKL 849
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
+ + + + + E + + + E E + K + K+EL E K
Sbjct: 850 EKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 909
Query: 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVK 559
L E+ ++ ++ E ++ +EL + A + E+ + + NK +
Sbjct: 910 DNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLA 969
Query: 560 YLK--SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
+ ++ A EF+E+ + + E+L EE++ L E + + + V
Sbjct: 970 KEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVS 1029
Query: 618 TDGAEELQEKLDYMENKFQEE 638
+ + +
Sbjct: 1030 INRGLNKVFFYLELGGSAELR 1050
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 47.8 bits (114), Expect = 2e-05
Identities = 54/280 (19%), Positives = 126/280 (45%), Gaps = 37/280 (13%)
Query: 471 ETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530
E E + + +++ L++++ ELE+ + + E + ++ K+K++ E + +N+E
Sbjct: 257 EMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEE 316
Query: 531 LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE-VEKL 589
LE + ++ +R E+ + V L++L+ + E E + E R+ +++
Sbjct: 317 LEEEY-KIKKRTVEL-----LPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEY 370
Query: 590 SEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
+ + E + +L++ ++L+ K++ +E++ Q + +Y++L+ E
Sbjct: 371 RSLKEKNRNKEDETQRQLDE-----------IKKLRNKIEELESELQTKEQLYKQLLDEY 419
Query: 650 ENL------------ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGD 697
EN I ++ +++ + + ++ D ++LQKEI N+ L +
Sbjct: 420 ENAPKSVSRSAYTRRILEIIKNIKKQKEDIDKILSDTRSLQKEINNITGKLDRTFTVTDE 479
Query: 698 LKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737
L + K + E K K +A L C EL + V
Sbjct: 480 LLFRDAKKD-------EHAKKAYKLLAALHENCSELIETV 512
Score = 38.6 bits (90), Expect = 0.017
Identities = 35/233 (15%), Positives = 81/233 (34%), Gaps = 22/233 (9%)
Query: 644 RLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH 703
RL + + Q + + ++ A + + + GS +K A
Sbjct: 193 RLDQKAAEYLRQAAQAGTTGSSSADDLADLLSKFRLDSWDKGSRFTRTEKVEQAATAAAE 252
Query: 704 KYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE---ADCQSYLNTIKNMENDERS 760
++ K +E ++ L+ + +EL + ++ S + + R
Sbjct: 253 VPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQ 312
Query: 761 TKHNQEKLLKIYE---DRLKAVQDELAEMK--CAQLKPSLEASAATPSQYRKQLEDQVNS 815
E+ KI + + L ++ +A+++ L A +R L D+ S
Sbjct: 313 ENEELEEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRS 372
Query: 816 LKA--------------ELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ 854
LK E+++ N + +L+ +L K ++ L + E + +
Sbjct: 373 LKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYENAPKS 425
Score = 36.7 bits (85), Expect = 0.067
Identities = 46/244 (18%), Positives = 102/244 (41%), Gaps = 24/244 (9%)
Query: 523 DLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT---EI 579
DL++K + R E++E+ A + + + + D KE E +I
Sbjct: 221 DLLSKFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAE-MDTEEDRTKEREAELEALQEQI 279
Query: 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEES 639
++L S +E++ E + L + ++ EL EEL+E+ + +
Sbjct: 280 DELESSIEEVLSEIKALASKIKQVNEELTTVRQEN-------EELEEEYKIKKRTVE--- 329
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE-IKNLGSLLVDKDKTIGDL 698
L+ + EN +++L+A + ++ + A +A + I SL +
Sbjct: 330 -----LLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDET 384
Query: 699 KAKIHKYEKYYAVMKE---DRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755
+ ++ + +K ++E + +TKE+ +L + E + V++ A + L IKN++
Sbjct: 385 QRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYENAPKSVSR-SAYTRRILEIIKNIK 443
Query: 756 NDER 759
+
Sbjct: 444 KQKE 447
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 47.7 bits (113), Expect = 3e-05
Identities = 59/355 (16%), Positives = 121/355 (34%), Gaps = 16/355 (4%)
Query: 420 EEQQTDWENNVKKLREQHEED-LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAI 478
E++ + Q L + K I L Q +D T S
Sbjct: 553 SERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL------QNITVRLQDLTEKLSEA 606
Query: 479 EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538
E + L ++L + + +LT + +T +E + L
Sbjct: 607 EDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE-RVREHAL 665
Query: 539 SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTV 598
S RV E A + ++++ K L KE + T + +L + +E+ E +
Sbjct: 666 SIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725
Query: 599 RSAELEYELEQRDYLIAVKTDGAEELQ-EKLDYMENKFQ---EESLVYERLMSEKENLIS 654
S+ L +L R+ + L EE + +E +L +
Sbjct: 726 ASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785
Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKN-LGSLLVDKDKTIGDLKAKIHKYEKYYAVMK 713
+++ +++ E + +EI + L + + + + + + + E+ A +
Sbjct: 786 EIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845
Query: 714 EDRKTKEKDIAELKTKCEELTQQVTKL--EADCQSYLNTIKNMENDERSTKHNQE 766
E K E + +LTQ+ K+ +D + +N IK + + K E
Sbjct: 846 EITHQLLKY-EECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHE 899
Score = 37.6 bits (87), Expect = 0.034
Identities = 68/508 (13%), Positives = 148/508 (29%), Gaps = 61/508 (12%)
Query: 381 TIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEED 440
L + + + E+ +QE + + E +Q +++ Q
Sbjct: 432 QQELQQRYAELCAAAITCTAQCEKLEK-IHLQESAQSLKEREQQ--LQTKEQIHLQETR- 487
Query: 441 LERQRKFYKTQIETLMTLVKNQQAEDDSE-DETLNESAIEAQHKLKIQNLKQELSELEAK 499
+ ++ + E+ + Q L + + E
Sbjct: 488 -----------KKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQT 536
Query: 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVK 559
Y L ED+ +L + Q + E+M+ Q+ +
Sbjct: 537 YAQLETSEEDVYHQLTSERK-----------------QRASLKEQMQEIQQSFSI----- 574
Query: 560 YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTD 619
L + +KE+ +L+ EKLSE +L L +L+
Sbjct: 575 -LTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP---------- 623
Query: 620 GAEELQEKLDYMENKFQEESLVYERLMSEKENLISQ-LKADLESNRAESNQSAHDEQALQ 678
++LQ+ +++ QE +L L + + L + ++ S R + Q
Sbjct: 624 -EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL 682
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIH----KYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
+++++ L + + + + E+Y E ++L + + L
Sbjct: 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALN 742
Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED--RLKAVQDELAEMKCAQLK 792
Q + +L ++ L + + + L E LK
Sbjct: 743 QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852
L Q +L E EQ + + + L + I + + E+
Sbjct: 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE----ITHQLLKYEECS 858
Query: 853 QQQQQQRSPLKGLENQMAKINIDRSPSG 880
+Q Q + K+N
Sbjct: 859 KQLAQLTQEQAKIIQLSDKLNGINQIKI 886
Score = 34.6 bits (79), Expect = 0.30
Identities = 48/328 (14%), Positives = 113/328 (34%), Gaps = 28/328 (8%)
Query: 527 KNKELEGKVAQLSRRVEEMERGA--QTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRS 584
K K L GK L+ R + + + E + L+ L +E ++ L
Sbjct: 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQ 247
Query: 585 EVEKLSEE-----------RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN 633
+ E E+ R+ +R+ E E Q A K + + +E
Sbjct: 248 KREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQ 307
Query: 634 KFQEESLVYERLMSEKENLISQL--KADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK 691
+ Q ++ L S+ + L +A ++ + Q L + + +
Sbjct: 308 QAQR---IHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEV 363
Query: 692 DKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTI 751
+I ++ + H ++ +++ + T + + L + + L ++ ++ +
Sbjct: 364 ATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA----- 418
Query: 752 KNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLED 811
+ + Q++L + Y + A +C +L+ +A + R+Q
Sbjct: 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITC--TAQCEKLEKIHLQESAQSLKEREQQLQ 476
Query: 812 QVNSLKAELEQRHNVVRDLQLKLLQKGE 839
+ + ++ VV L L + E
Sbjct: 477 TKEQIHLQETRKKAVV--LARLLELQEE 502
Score = 31.9 bits (72), Expect = 2.1
Identities = 71/476 (14%), Positives = 151/476 (31%), Gaps = 42/476 (8%)
Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK---NQQAE 465
+E++ + + QQ+ K+ ++ + ++ K + +IE L Q
Sbjct: 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQER 285
Query: 466 DDSEDETLN---ESAIEAQHKLKIQNLKQELSELEAKYKSL----------SEEHEDMSG 512
+ + Q + + Q + EL L E+
Sbjct: 286 INRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER----GAQTENKPEEVKYLKSLLDEA 568
L+ L + + ++ ++ + Q ++++ L LD
Sbjct: 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIL 405
Query: 569 KEEFKEQTTEIEQLRSEVEKL--SEERRLLTVRSAELEYELEQRDYLIAV-KTDGAEELQ 625
+ E T R +L +++++ L R AEL + +E
Sbjct: 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLG 685
+ L E + Q + ++ + +K ++++L E H A Q +I N G
Sbjct: 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQ-DIDNPG 524
Query: 686 SLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQ 745
L + E Y + +RK A LK + +E+ Q + L
Sbjct: 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERK----QRASLKEQMQEIQQSFSILTQCDN 580
Query: 746 SYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQY 805
I N++N + EKL + + L +++ Q + +
Sbjct: 581 RSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDV-------RLH 633
Query: 806 RKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSP 861
+Q ++ L LQL L Q+ + L ++ + +Q +
Sbjct: 634 LQQCSQELALKLTALHA-------LQLTLTQERVREHALSIRVLPKELLASRQLAL 682
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 47.3 bits (112), Expect = 3e-05
Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 72/365 (19%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
+ Y +++ + FE+ ++ L+ Q++
Sbjct: 249 DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-------------------------- 282
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+ QE ++ K K+L E+ + + +
Sbjct: 283 --------------------LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMK 322
Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
K++E GK+ +L +E E EE+K L+S +DE ++ ++Q EQ
Sbjct: 323 QKSQEWPGKLEKLKSEIELKE---------EEIKALQSNIDELHKQLRKQGISTEQ---- 369
Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE-ESLVYER 644
E +++ER LT EL+ Q D L E Q +E ++ +SL+
Sbjct: 370 FELMNQEREKLT---RELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQN- 425
Query: 645 LMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHK 704
I++ ++ + N +S+ + EQ K S+ + +++ +I
Sbjct: 426 --------ITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKT 477
Query: 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764
E ++ED K + DI EL E+L ++++ + + + +R
Sbjct: 478 EENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEK 537
Query: 765 QEKLL 769
EK L
Sbjct: 538 LEKEL 542
Score = 35.0 bits (80), Expect = 0.20
Identities = 54/315 (17%), Positives = 122/315 (38%), Gaps = 31/315 (9%)
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
K Q + + E K+S++ + L + L + + + ++
Sbjct: 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRAL--------------KSDSNKYENYVN 319
Query: 630 YMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLV 689
M+ K QE E+L SE E ++KA L+SN E ++ + ++ + +
Sbjct: 320 AMKQKSQEWPGKLEKLKSEIELKEEEIKA-LQSNIDELHKQLRKQGISTEQFELMNQERE 378
Query: 690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLN 749
+ + + + K K K + + K + + + + L Q +T+ + +N
Sbjct: 379 KLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVN 438
Query: 750 TIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQL 809
N E+ I + L+ + DE+ E + S+ L
Sbjct: 439 DSSLKINIEQLFPKGSGINESIKKSILE-LNDEIQERIKTEENKSI------------TL 485
Query: 810 EDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
E+ + +LK ++ + ++ L+L+L + K E+++++ QR ++ LE ++
Sbjct: 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSK---EENERELVAQRIEIEKLEKEL 542
Query: 870 AKINIDRSPSGEDTD 884
+N+ S D +
Sbjct: 543 NDLNLLSKTSILDAE 557
Score = 31.1 bits (70), Expect = 3.2
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 12/145 (8%)
Query: 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYE------DRLKAVQDELAEM-----KCAQLK 792
+SY + +K +N E S + + K LK D L E K +Q
Sbjct: 238 TESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKI 297
Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQ 852
+L + E+ VN++K + ++ + L+ ++ K E I L++ +++
Sbjct: 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELH 357
Query: 853 QQQQQQRSPLKGLENQMA-KINIDR 876
+Q ++Q + E + + R
Sbjct: 358 KQLRKQGISTEQFELMNQEREKLTR 382
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 46.4 bits (110), Expect = 6e-05
Identities = 70/396 (17%), Positives = 161/396 (40%), Gaps = 53/396 (13%)
Query: 378 PYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQH 437
P + R + + E +E E ++ + ++ + + + ++KL++
Sbjct: 412 PVDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKK-- 469
Query: 438 EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
E DLE ++ + ++ + ++ +S+D+ ++ +E KLK + LS
Sbjct: 470 EIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLK-DEFNKRLSRAP 528
Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
Y SL + + L E +R K+K + K A+++++ +E+ + + K E
Sbjct: 529 N-YLSLKYKLD----MLNEFSRAKALSEKKSKAEKLK-AEINKKFKEVMDRPEIKEKMEA 582
Query: 558 VK--YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA 615
+K S E + ++E+++ E+E E +L +S LE +
Sbjct: 583 LKAEVASSGASSGDELDDDLKEKVEKMKKEIE--LELAGVL--KSMGLEVIGVTKKNKDT 638
Query: 616 VKTDGAEELQEKLDYMENKFQEESLVYERLM--SEKENLISQLKADL-ESNRAESNQSAH 672
+ LQEK++ + +E + ER++ S+ ++ I LK ++ ++++
Sbjct: 639 AEQTPPPNLQEKIESLN---EEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKE 695
Query: 673 DEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
+AL+++IK +K + + +ELK K EE
Sbjct: 696 KIEALEQQIK-----------------------QKIAEAL---------NSSELKEKFEE 723
Query: 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
L ++ ++KN ++ E +K + ++
Sbjct: 724 LEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRV 759
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 45.9 bits (108), Expect = 1e-04
Identities = 107/542 (19%), Positives = 220/542 (40%), Gaps = 27/542 (4%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQ-----EDFRKMFEEQQTDWENNVKKLR 434
+ + EAR AE K+ + E+ R+ + ED +K ++ + ++LR
Sbjct: 1138 DARKAEEARKAED---AKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELR 1194
Query: 435 EQHE-EDLERQRKFYKT-QIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQE 492
+ + E RK + + E ++AE + E + A EA+ + +N ++
Sbjct: 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
Query: 493 LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTE 552
EA+ + + + E + K K E K A+ ++ +E ++ A+
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
Query: 553 NKPEEVKY----LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
K +E K K D AK++ +E E ++E E ++E ++ E + E
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 609 QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESN 668
+ AEE + K D + K +E+ + L ++ KAD +AE
Sbjct: 1375 EAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELKKAAA---AKKKADEAKKKAEEK 1430
Query: 669 QSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKT 728
+ A + + +E K ++ +AK E A + + + K E K
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Query: 729 KCEELTQQVTKLE--ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE- 785
K EE ++ + + A+ + + K E +++ + + + K ++ KA + + A+
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Query: 786 -MKCAQLKPSLEASAATPSQYRKQLEDQVNSL-KAELEQRHNVVRDLQLKLLQKGEMINN 843
K +LK + E A + +K ED+ +L KAE ++ R ++ L + E
Sbjct: 1551 LKKAEELKKAEEKKKA--EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE--KK 1606
Query: 844 LKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQL 903
+KA+ K ++ + + LK E + K+ + E+ + L ++ ++ K +
Sbjct: 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
Query: 904 KK 905
K
Sbjct: 1667 AK 1668
Score = 45.5 bits (107), Expect = 2e-04
Identities = 75/416 (18%), Positives = 161/416 (38%), Gaps = 29/416 (6%)
Query: 396 DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETL 455
+K E + +EE ++ + +K EE++ + +++ EED ++ + K
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKK-----KADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 456 MTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
++AE+ + + + A EA+ + + +E + E K E + K K
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
+ D K E K A +++ E ++ A K EE K + + ++
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
Query: 576 TTEIEQLRS--EVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEK--LDYM 631
+ E+ + E++K E ++ + AE + E+ + K + A++ +E + M
Sbjct: 1539 AKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
Query: 632 ENKFQEESLVYERLMSEKENLIS-----------------QLKADLESNRAESNQSAHDE 674
+ +E+ + E +E I + K E +AE + A +E
Sbjct: 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
++ + + ++DK + K + EK A + + K ELK K E
Sbjct: 1659 NKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQ 790
++ +L+ + + + + K E+ K E++ K + E K A+
Sbjct: 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
Score = 40.1 bits (93), Expect = 0.007
Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 21/246 (8%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
KK E + EE ++ +E K EE + ++ ++ E +E K Y+ + +
Sbjct: 1552 KKAEELKKAEEKKKAEE--AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
Query: 457 TLVKNQQAEDDSEDETLNESAI----------EAQHKLKIQNLKQELSELEAKYKSLSEE 506
K + +E EA+ K K + LK+ E + K +++
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Query: 507 HEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTE-NKPEEVKYL---- 561
E+ K +E + D K E K A+ +++ EE+++ E K EE+K
Sbjct: 1670 AEEDKKKAEEAKKAEED-EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621
K +EAK+E +E + E+ + + E E++++ ++ E + E R AV +
Sbjct: 1729 KIKAEEAKKEAEEDKKKAEEAKKDEE---EKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
Query: 622 EELQEK 627
+E EK
Sbjct: 1786 DEEDEK 1791
Score = 37.4 bits (86), Expect = 0.041
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
KK E +I+ E + E+ +K E+ + KK E + + E + K + +
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 457 TLVKNQQAEDDSEDETLNESAI--EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKL 514
K ++A+ EDE A+ EA+ K + LK++ +E + K + L + E+ K
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
+E K + E K ++ EE ++ + + K +K K +A+E KE
Sbjct: 1733 EEA---------KKEAEEDK-----KKAEEAKKDEEEKKKIAHLK--KEEEKKAEEIRKE 1776
Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRS 600
+ IE+ E+++ E+RR+ +
Sbjct: 1777 KEAVIEE---ELDEEDEKRRMEVDKK 1799
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 45.2 bits (107), Expect = 2e-04
Identities = 51/310 (16%), Positives = 109/310 (35%), Gaps = 14/310 (4%)
Query: 555 PEEVKYLKSLLDEAKEEFKEQ------TTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
P K L+ L EA +K +E+L+ E ++ E + A LE
Sbjct: 157 PASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEK----EYATYHKLLE 212
Query: 609 QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESN 668
R A + EL+ D++ +++ + E + L +L E
Sbjct: 213 SRRAEHARLAELRSELRADRDHIRA--LRDAVELWPRLQEWKQLEQELTRRREELATFPR 270
Query: 669 QSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKT 728
+ + ++ + + + +LK + + + + ++E+K
Sbjct: 271 DGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKA 330
Query: 729 KCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKC 788
ELT+ + +EAD + N ER + + Y+ + ++ A C
Sbjct: 331 SAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAY-C 389
Query: 789 AQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQM 848
+L + R++L D ++A E R + +++ K E+ N +
Sbjct: 390 KRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANS-QVIDKEEVCNLYDRRD 448
Query: 849 EKSQQQQQQQ 858
Q+Q+ +
Sbjct: 449 TAWQKQRFLR 458
Score = 41.0 bits (96), Expect = 0.003
Identities = 65/337 (19%), Positives = 123/337 (36%), Gaps = 20/337 (5%)
Query: 444 QRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSL 503
Q F QI L +K+ E + E +L I + EL+ +
Sbjct: 497 QIIFAVAQIVFLSAEIKSSSRAVREEKAAV-TDIPEELARLLITDELPELAVDLLVQSRI 555
Query: 504 SEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM--ERGAQTENKPEEVKYL 561
+ + + L +L L + E +A+ EE E G E PE+ +
Sbjct: 556 RQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDI 615
Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621
S + + K+ ++ +L +V +L EE+ R L LE + ++
Sbjct: 616 LSTMKDLKKLMQK----KAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFC-- 669
Query: 622 EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ-----SAHDEQA 676
+Q E + +E L E + + L +L+A+LE +R E +A E A
Sbjct: 670 --VQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDA 727
Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE--DRKTKEKDIAELKTKCEELT 734
++ + L + + + Y + R+ KE+++A L+ + L
Sbjct: 728 FREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALD 787
Query: 735 QQVTKLEADCQSYLNTIKNMENDER--STKHNQEKLL 769
++V +L A + I +E + +E L
Sbjct: 788 EEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLK 824
Score = 32.9 bits (75), Expect = 0.92
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 12/181 (6%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
EE + E N+++ +E ++E L + + ++ +I L D+ED + E
Sbjct: 682 EEARLALEGNIERTKELNDE-LRAELELHRKEILDLF-----DCGTADTEDAFREAAREE 735
Query: 480 AQHKL---KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK---ELEG 533
Q ++++L+ +L + A+ LS + K +EL + ++ EL
Sbjct: 736 QQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHA 795
Query: 534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
+VA LSR++ ++E G + + LK L+E ++ ++ L + E R
Sbjct: 796 QVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERR 855
Query: 594 R 594
Sbjct: 856 L 856
Score = 32.9 bits (75), Expect = 0.99
Identities = 53/302 (17%), Positives = 106/302 (35%), Gaps = 40/302 (13%)
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
Q K++ + E+ E E +Y + + E R + EL ++
Sbjct: 184 NQLLEKLKQERNEIDEAEKEYATYHKLLESR-----------RAEHARLAELRSELRADR 232
Query: 540 RRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF----KEQTTEIEQLRSEVEKLSEERRL 595
+ + + + +E K L+ L +EE ++ +E+ + ++K E
Sbjct: 233 DHIRALRDAVELWPRLQEWKQLEQELTRRREELATFPRDGVLRLEKREAHLQKTEAEIDA 292
Query: 596 LTVRSAELEYELEQRDYLIAVK---TDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
L VR AEL + LI K L ++L ++ E + + ++ +
Sbjct: 293 LLVRLAEL---KDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDK 349
Query: 653 ISQLKADLESNRAESNQSAHDE---QALQKEIKNLGSLLVDK--DKTIGDLKAKIHKYEK 707
E+ R +S Q+ Q+E+K + + +K + + +A+ ++
Sbjct: 350 EEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQR 409
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
+E R E A + QV E C Y D R T +++
Sbjct: 410 LADDEEEVRAGDE---AREEKI--AANSQVIDKEEVCNLY---------DRRDTAWQKQR 455
Query: 768 LL 769
L
Sbjct: 456 FL 457
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 44.7 bits (106), Expect = 2e-04
Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 34/230 (14%)
Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENR 522
A+D + + I A K KI+ + + ++LE + KSL E + +L E + +
Sbjct: 34 AADDKQLKQI--QKEIAALEK-KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90
Query: 523 DLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL 582
L + +L ++ L V+E E+ + L L + +
Sbjct: 91 KLRKQIADLNARLNAL--EVQEREQRRR----------LAEQLAALQRSGRN-------- 130
Query: 583 RSEVEKLSEERRLLTVRSAELEYEL-----EQRDYLIAVKTD------GAEELQEKLDYM 631
+S E +VR A L E+ D L A Q +L +
Sbjct: 131 PPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTL 190
Query: 632 ENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
++ + + +L+ E++ ++QL ++L +++ + + +E L+ EI
Sbjct: 191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240
Score = 40.1 bits (94), Expect = 0.004
Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 32/231 (13%)
Query: 650 ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYY 709
+ + Q++ ++ + + + L+K++K+L + I L+A++ +
Sbjct: 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSL-------ETEIASLEAQLIETAD-- 87
Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER-----STKHN 764
D K K IA+L + L Q + L ++ + S +
Sbjct: 88 -----DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA 142
Query: 765 QEK-LLKIYEDRLKAVQDELAEMKCAQLK--PSLEASAATPSQYRKQLEDQVNSLKAELE 821
Q L IY A+ AE A L A A + + +L ++ +A+
Sbjct: 143 QRSVRLAIYYG---ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQ- 198
Query: 822 QRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
L L ++ + + L +++ Q++ ++ R+ L+N++A
Sbjct: 199 ------AKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243
Score = 33.9 bits (78), Expect = 0.44
Identities = 30/224 (13%), Positives = 89/224 (39%), Gaps = 19/224 (8%)
Query: 427 ENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKI 486
+ +K+++++ LE++ + + Q L +K+ + E S + L E+A + +
Sbjct: 37 DKQLKQIQKEIAA-LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD------L 89
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKEL------TRENRDLVTK--NKELEGKV--A 536
+ L++++++L A+ +L + + +L E + N ++ + V A
Sbjct: 90 KKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA 149
Query: 537 QLSRRV--EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
+ ER + +++ +++ + + E +E ++++ +L EER+
Sbjct: 150 IYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERK 209
Query: 595 LLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEE 638
+ +++ + + + K +E
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREA 253
Score = 32.8 bits (75), Expect = 0.84
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 3/104 (2%)
Query: 408 YREVQEDFRKMFEEQQTDWE--NNVKKLREQHEEDLERQRKFYKTQIETL-MTLVKNQQA 464
Y + + + + + V+ + +L + Q L L + ++
Sbjct: 152 YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKT 211
Query: 465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHE 508
E + + + LK E++ EA E
Sbjct: 212 LAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255
Score = 31.2 bits (71), Expect = 2.8
Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 33/175 (18%)
Query: 710 AVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLL 769
A + K +K+IA L+ K E Q KLE +K++E + S + L
Sbjct: 34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQ-------LKSLETEIASLEAQ----L 82
Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
D LK ++ ++A++ L A + R++L +Q+ +L QR
Sbjct: 83 IETADDLKKLRKQIADL-----NARLNALEVQEREQRRRLAEQLAAL-----QRSGRNPP 132
Query: 830 LQLKLLQK------------GEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
L + + G + +++ + +Q + + + A++
Sbjct: 133 PALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAEL 187
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 44.7 bits (106), Expect = 2e-04
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 479 EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538
E + + +I ++ + +LE + L EE+ ++ +L+EL RE ++LE ++ +
Sbjct: 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREI-------EKLESELERF 462
Query: 539 SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
R V + R K E++ ++ ++E +E+ +E+L ++ +L + R+L
Sbjct: 463 RREVRDKVR------KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Score = 38.1 bits (89), Expect = 0.023
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
+ K+ EE R E E E Y E+ +KL+ + +EE+ +R
Sbjct: 394 LSKVKEEERPREKEGTEEEERREITVY---------EKRIKKLEETVERLEEENSELKRE 444
Query: 646 MSEKENLISQLKADLESNRAESNQSAHDE---QALQKEIKNLGSLLVDKDKTIGDLKAKI 702
+ E + I +L+++LE R E + +A + I+ L L +K K + +L+ K+
Sbjct: 445 LEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504
Query: 703 HKYEKYYAVMKEDRKTKEKDI 723
+ K + + T K +
Sbjct: 505 AELRKMRKLELSGKGTPVKVV 525
Score = 37.4 bits (87), Expect = 0.034
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 32/171 (18%)
Query: 489 LKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG 548
L + LS+++ + E + G +E RE + K+LE V +L E++R
Sbjct: 390 LAEALSKVKEE-----ERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKR- 443
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
E +E EIE+L SE+E+ E R + E+
Sbjct: 444 ----------------------ELEELKREIEKLESELERFRREVRD----KVRKDREIR 477
Query: 609 QRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD 659
RD I EE +++++ +E K E + + +S K + ++
Sbjct: 478 ARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKL 528
Score = 34.7 bits (80), Expect = 0.25
Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 39/207 (18%)
Query: 380 ETIRLLEARLAEFEGFDKKE-------FEYQIREEYREVQEDFRKMFEEQQTDWENNVKK 432
+ +E +L E + E Y + E +V+E+ R +E + E
Sbjct: 359 PKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREIT 418
Query: 433 LREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQE 492
+ E+ + LE + + + L K +++ LK+E
Sbjct: 419 VYEKRIKKLEETVERLEEENSEL---------------------------KRELEELKRE 451
Query: 493 LSELEAKYKSLSEEHEDMSGKLKELT---RENRDLVTKNKELEGKVAQLSRRVEEME--R 547
+ +LE++ + E D K +E+ R L + +E + +V +L R++ E+ R
Sbjct: 452 IEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511
Query: 548 GAQTENKPEEVKYLKSLLDEAKEEFKE 574
+ K VK ++ L EA EE +E
Sbjct: 512 KLELSGKGTPVKVVEKLTLEAIEEAEE 538
Score = 34.7 bits (80), Expect = 0.25
Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEN-DERSTKHNQEKLLKIYED 774
K KE++ E + + Y IK +E ER + N E LK +
Sbjct: 395 SKVKEEERPR------EKEGTEEEERREITVYEKRIKKLEETVERLEEENSE--LKRELE 446
Query: 775 RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKL 834
LK ++L E + + + + RK E + R + L+ +L
Sbjct: 447 ELKREIEKL-ESELERFRREVRDKV------RKDRE---------IRARDRRIERLEKEL 490
Query: 835 LQKGEMINNLKAQMEKSQQQQQQQRS----PLKGLE 866
+K + + L+ ++ + ++ ++ + S P+K +E
Sbjct: 491 EEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVE 526
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 43.9 bits (104), Expect = 3e-04
Identities = 74/333 (22%), Positives = 135/333 (40%), Gaps = 61/333 (18%)
Query: 382 IRLLEARLAE----FEGF--DKKEFEYQIREEYREVQEDFRKMFE-------EQQTDWEN 428
I LEA L E +E + ++ EE + E K F E++ E
Sbjct: 211 IEALEAELKEQSEKYEDLAQEIAHLRNEL-EEAQRSLESLEKKFRSEGGDLFEEREQLER 269
Query: 429 NVKKLREQHEEDLERQRKF----------------YKTQIETLMTLVKNQQAEDDSED-- 470
+K++ + + + R+ K Q++ +NQ +++ E+
Sbjct: 270 QLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERD 329
Query: 471 ----ETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVT 526
E+L + A+ A+H +I EL+E++ + SE +SG ELT+ +
Sbjct: 330 KELLESLPKLALPAEHVKEIAA---ELAEIDKPATTDSEIPHRLSGS--ELTQLEVLIQQ 384
Query: 527 KNKELEGKVAQLSRRVEEMERGAQTENK-------PEEVKYLKSLLDEAKEE-------F 572
+EL+ +QL + + E+E +K E++ L L EA+ E
Sbjct: 385 VKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEI 444
Query: 573 KEQTTEIEQLRSEVEKLSEERRLLT---VRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
+E ++E L+ +E L + T + + ELE + D + E+L E+
Sbjct: 445 EELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREKLLER-- 502
Query: 630 YMENKFQEESLVYERLMSEKENLISQLKADLES 662
+ +EE + + K NLIS+LK D E+
Sbjct: 503 -KLQQLEEEITKSFKKLMRKHNLISRLKIDPET 534
Score = 43.9 bits (104), Expect = 4e-04
Identities = 53/301 (17%), Positives = 117/301 (38%), Gaps = 27/301 (8%)
Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL-----SRRVEEME 546
E+ LEA+ K SE++ED++ ++ L E + + LE K R +
Sbjct: 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLER 269
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
+ + E + + L ++ +++++K + ++ + E +
Sbjct: 270 QLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERD 329
Query: 607 LEQRDYLI--AVKTDGAEELQEKLDYMENKFQEESLVYERL----MSEKENLISQLKADL 660
E + L A+ + +E+ +L ++ +S + RL +++ E LI Q+K +L
Sbjct: 330 KELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKREL 389
Query: 661 ESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDR---K 717
+ +Q + +E++ + + K TI + + + + E +
Sbjct: 390 ---QDAKSQLLKE----LRELEEELAEVDKKISTIPSEE----QIAQLLEELGEAQNELF 438
Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ--EKLLKIYEDR 775
E +I EL + E L + + L N ER+ +K LK + ++
Sbjct: 439 RSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTLKEFREK 498
Query: 776 L 776
L
Sbjct: 499 L 499
Score = 33.1 bits (76), Expect = 0.86
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 752 KNMENDERSTKHNQEKLLKIYEDRLKAVQDEL--AEMKCAQLKPSLEASAATPSQYRKQL 809
+E E K EK + + +++EL A+ L+ + + R+QL
Sbjct: 209 SEIEALEAELKEQSEKY-EDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQL 267
Query: 810 EDQVNSLKAELEQRHNVVRDL---QLKLLQKGEMINNLKAQMEKSQQQQQQQ 858
E Q+ ++A + +R+L L LL ++++ KAQ++K +Q QQ Q
Sbjct: 268 ERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQ 319
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 43.9 bits (104), Expect = 4e-04
Identities = 66/452 (14%), Positives = 134/452 (29%), Gaps = 55/452 (12%)
Query: 392 FEGFDKKEF--EYQIREEYREVQEDFRKMFEEQQTDWE-NNVK-----------KLREQH 437
F K+ + R E E R++ E + +++K +L++
Sbjct: 861 FSLLKKETIYLQSAQRVELAE-----RQLQELKIDVKSISSLKLVNLELESEIIELKKSL 915
Query: 438 EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
DL +F I L L+ N E+ E + + LK+ E E
Sbjct: 916 SSDLIENLEFKTELIARLKKLLNNIDLEEGPSIE-YVKLPELNKLHEVESKLKETSEEYE 974
Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG---KVAQLSRRVEEMERGAQTENK 554
K + + + EL ++L +K+ QL E+
Sbjct: 975 DLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKI 1034
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614
S+L ++ E QL++ + L R + +L + L
Sbjct: 1035 ISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLK 1094
Query: 615 AVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
+ + + +LV + + +K +L ++
Sbjct: 1095 TIN------------VKDLEVTNRNLVKPA-NVLQFIVAQMIKLNLLQEISKFLSQ--LV 1139
Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHK-YEKYYAVMKEDRKTKEKDIAELKTKCEEL 733
L+ + L L ++ D + +A + E R + A K +
Sbjct: 1140 NTLEPVFQKLSVLQLELD-GLFWEANLEALPSPPPFAALSEKRLYQS---ALYDEKSKLS 1195
Query: 734 TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKP 793
+ +V L+ N + + + S +KL K+ + +
Sbjct: 1196 SSEVNDLK-------NELIALFSKIFSGWPRGDKLKKL----ISEGWVPTEYSTSLKGFN 1244
Query: 794 SLEASAATPSQYRK-QLEDQVNSLKAELEQRH 824
+L TP+ +L +NS+ L
Sbjct: 1245 NLNKKFDTPASMSNEKLLSLLNSIDNLLSSYK 1276
Score = 35.8 bits (83), Expect = 0.14
Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 41/272 (15%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
+ D +N + L + R K K E + + + + +
Sbjct: 1196 SSEVNDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFD---- 1251
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRD-----LVTKNKELEGK 534
+ + L L+ ++ S E E + + L + L TK L K
Sbjct: 1252 TPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWK 1311
Query: 535 VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
A EV Y LD+ EF EI + E+E+L + +
Sbjct: 1312 SA-------------------TEVNYNSEELDDWCREF-----EISDVDEELEELIQAVK 1347
Query: 595 LLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDY------MENKFQEESLVYERLMSE 648
+L + +L E D ++ + L+ + D + + ++ + L+ +
Sbjct: 1348 VLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKK--IEALLIKQ 1405
Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKE 680
+ L + K + E + +E +L +
Sbjct: 1406 ELQLSLEGKDETEVHLSEIFSEEKSLISLDRN 1437
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 43.7 bits (103), Expect = 4e-04
Identities = 85/512 (16%), Positives = 188/512 (36%), Gaps = 71/512 (13%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
+ E+ + E E + Y+E++E K+ + V K R +
Sbjct: 249 DMKNRYESEIKTAES--DLSMELEKNNYYKELEERHMKIIN-------DPVYKNRNYIND 299
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK 499
+ YK IE ++ N AE + + + ++ + K +L +
Sbjct: 300 YFK-----YKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQ 354
Query: 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVK 559
L D + LK + + + +K +E A +S ++ E K E+
Sbjct: 355 ILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKK--ELN 412
Query: 560 YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS------------------- 600
+ L + + I LR +++LS +L +S
Sbjct: 413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIIN 472
Query: 601 ------AELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLIS 654
+ LE ++ + + + + +L+++ +Y+E++ +S+ + +
Sbjct: 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLE 532
Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714
+K + E + ++ K+L + DL +K + AV+
Sbjct: 533 DIKIKI----NELKDKHDKYEEIKNRYKSL---------KLEDLDSKRTSWLNALAVISL 579
Query: 715 -DRKTKEKDIAELKTKCEELTQQVTKLEA---DCQSYL-NTIKNMENDERS--TKHNQEK 767
D +T E+K + +L ++ ++E D +SY+ +I+ +EN+ + K+N+ +
Sbjct: 580 IDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQ 639
Query: 768 LLKIYEDRL----KAVQDELAEMKC-----AQLKPSLEASAATPSQYRKQLEDQVNSLKA 818
KI ++L + ++AE+ ++ + + RK L D + +A
Sbjct: 640 ENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKAL-DDAKANRA 698
Query: 819 ELEQRHNVVRDLQLKLLQKGEMINNLKAQMEK 850
LE ++R +L + IN M+K
Sbjct: 699 RLESTIEILRTRINELSDRINDINETLESMKK 730
Score = 43.7 bits (103), Expect = 4e-04
Identities = 62/359 (17%), Positives = 135/359 (37%), Gaps = 39/359 (10%)
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL--TVRSAELEYELEQRDYLIAVKTDG 620
S +D +E+ K E+E ++ ++ + + + +EY DY
Sbjct: 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA-- 240
Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
EL D M+N+++ E E +S + + K E + N + + +
Sbjct: 241 LNELSSLED-MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIND 299
Query: 681 IKNLGSLLVDKDKTIGDLKAKIHKYE---KYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737
+ + +K + + ++ A+I+KY K +V+++D D + K++ ++L Q+
Sbjct: 300 YFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDY----NDYIKKKSRYDDLNNQI 355
Query: 738 TKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEA 797
+LE Y + +K++E + +K ++ Y ++ + ++E+ L+
Sbjct: 356 LELEGYEMDYNSYLKSIE--------SLKKKIEEYSKNIERMSAFISEI--------LKI 399
Query: 798 SAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857
P +K+L + + +L+ + V L + + NL + Q
Sbjct: 400 QEIDPDAIKKELNE----INVKLQDISSKVSSLNQR---IRALRENLDELSRNMEMLNGQ 452
Query: 858 QRSPLKGLENQMAKINIDRSPSGED----TDDPDFLPRSRCKSTSKKRQLKKPSTHLNS 912
P+ G K N + E + + K LKK +L S
Sbjct: 453 SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLES 511
Score = 39.1 bits (91), Expect = 0.012
Identities = 45/281 (16%), Positives = 105/281 (37%), Gaps = 33/281 (11%)
Query: 355 SDIVFQERASGEMTDYFQGSHDDPYET-IRLLEARLAEFEGFDKKEFEYQIRE-EYREVQ 412
DI + + +Y + + +E+ A+ E K E + + +Y E++
Sbjct: 493 KDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIK 552
Query: 413 EDFRKM----FEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDS 468
++ + + ++T W N + + E + K Q+ E
Sbjct: 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQL---------NDLESRL 603
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN 528
++ + ++ I+ ++ E + L KY + E + KL+ + + +
Sbjct: 604 QEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIE-KLRGKIDNYKKQIAEI 662
Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
+ + +++ R+ ++E + +K + LD+AK + IE LR+ + +
Sbjct: 663 DSIIPDLKEITSRINDIE---------DNLKKSRKALDDAKANRARLESTIEILRTRINE 713
Query: 589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
LS+ R ++ LE + D + L+E D
Sbjct: 714 LSD-------RINDINETLESMKKIKKAIGD-LKRLREAFD 746
Score = 33.0 bits (75), Expect = 0.86
Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 26/301 (8%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
L+I +L++ +L+ L E ++ ++L N +L K++ S ++
Sbjct: 159 LEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLK 218
Query: 544 EMERGA--------QTENKPEEVKYLKSLLDEAK---EEFKEQTTEIEQLRSEVEKLS-- 590
E+ER + N + L SL D E K +++ +
Sbjct: 219 EIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKEL 278
Query: 591 EERRLLTVRSAELEYELEQRDYLIAVKTDGA-EELQEKLDYMENKFQEESLVYERLMSEK 649
EER + + + DY +++ +D NK+ L +
Sbjct: 279 EERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDY 338
Query: 650 ENLISQLKA--DLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
+ I + DL + E D + K I++L + + K I + A I
Sbjct: 339 NDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFI----- 393
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
E K +E D +K + E+ ++ + + S I+ + + N E
Sbjct: 394 -----SEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEM 448
Query: 768 L 768
L
Sbjct: 449 L 449
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 43.0 bits (102), Expect = 5e-04
Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 71/329 (21%)
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
K++ L ++N++L K +EL K + R+ + +E++ L+ LDE E
Sbjct: 19 KVRFLEQQNKELEAKIEELRQKKSAEPSRLYSLYE--------QEIRELRKQLDELTNER 70
Query: 573 KEQTTEIEQLRSEVE----KLSEERRLLTVRSAELEYELEQRDYLIAVKTD---GAEELQ 625
EI+ LR E K +E L ++ + D + D E LQ
Sbjct: 71 ARLQLEIDNLRLAAEDFREKYEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQ 130
Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLG 685
E+L +++ +EE + +L++ ++ E+
Sbjct: 131 EELAFLKKNHEEE--------------VRELQSQIQGQV-------------NVEMDA-- 161
Query: 686 SLLVDKDKTIGDLKAK--------IHKYEKYYAVMKED-RKTKEKDIAELKTKCEELTQ- 735
+ +D K + +++A+ + E++Y E+ ++ ++ L++ EE+T+
Sbjct: 162 ARKLDLTKALAEIRAQYEELAEKNRQEAEEWYKSKLEELQQAAARNGDALRSAKEEITEL 221
Query: 736 --QVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKC---AQ 790
Q+ LE + QS ++E + E L Y+D + +++EL ++K Q
Sbjct: 222 RRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDTISELEEELQQLKAEMARQ 281
Query: 791 L---------KPSLEASAATPSQYRKQLE 810
L K +L+ AT YRK LE
Sbjct: 282 LREYQELLDVKLALDIEIAT---YRKLLE 307
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 43.2 bits (103), Expect = 5e-04
Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 52/202 (25%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
++E + + E +E + ++ E + + KLR + E++L +R + + L
Sbjct: 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEI----HKLRNEFEKELRERRNELQKLEKRL- 91
Query: 457 TLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
Q E E L+ K++ L++ ELE K K L ++ +++ K +E
Sbjct: 92 -----LQKE-----ENLDR---------KLELLEKREEELEKKEKELEQKQQELEKKEEE 132
Query: 517 LTRENRDLVTK-NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
L L+ + +ELE +++ L+ EE K + LL++ +EE + +
Sbjct: 133 LEE----LIEEQLQELE-RISGLTA---------------EEAK--EILLEKVEEEARHE 170
Query: 576 TTEI-----EQLRSEVEKLSEE 592
+ E+ + E +K ++E
Sbjct: 171 AAVLIKEIEEEAKEEADKKAKE 192
Score = 42.8 bits (102), Expect = 7e-04
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 29/137 (21%)
Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAK--YKSLSEEHEDMSGKLKEL 517
K ++AE++++ L E+ EA+ +K+E LEAK L E E KEL
Sbjct: 32 KIKEAEEEAK-RILEEAKKEAE------AIKKEA-LLEAKEEIHKLRNEFE------KEL 77
Query: 518 TRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
+L K L K L R++E +E+ + L++ ++E +++
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEK-------------REEELEKKEKELEQKQQ 124
Query: 578 EIEQLRSEVEKLSEERR 594
E+E+ E+E+L EE+
Sbjct: 125 ELEKKEEELEELIEEQL 141
Score = 41.7 bits (99), Expect = 0.002
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 562 KSLLDEAKEEFK--------EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
K +L+EAK+E + E EI +LR+E EK ERR +LE L Q++
Sbjct: 41 KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR---NELQKLEKRLLQKEEN 97
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
+ K + E+ +E+L+ E + +++ E+ E E LI + +LE S +A
Sbjct: 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER---ISGLTA-- 152
Query: 674 EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKE 720
E+A + ++ + +++ + I + E+ A + D+K KE
Sbjct: 153 EEAKEILLEKV------EEEARHEAAVLIKEIEE-EAKEEADKKAKE 192
Score = 32.8 bits (76), Expect = 0.80
Identities = 23/106 (21%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHN 825
E +K E+ K + +E A+ + +K A ++++ N + EL +R N
Sbjct: 30 EAKIKEAEEEAKRILEE-AKKEAEAIKKEALLEA------KEEIHKLRNEFEKELRERRN 82
Query: 826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
++ L+ +LLQK E ++ +EK +++ +++ L+ + ++ K
Sbjct: 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
Score = 30.1 bits (69), Expect = 6.1
Identities = 27/143 (18%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 647 SEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYE 706
+ K+ + + K ++ R E + + + E++ L L+ K++ + + K E
Sbjct: 53 AIKKEALLEAKEEIHKLRNEFEKELRERR---NELQKLEKRLLQKEENLDRKLELLEKRE 109
Query: 707 KYYAVMKEDRKTKEKDIAELKTKCEEL-TQQVTKLEADCQSYLNTIKNM--ENDERSTKH 763
+ +++ + K++++ + + + EEL +Q+ +LE K + E E +H
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
Query: 764 NQEKLLKIYEDRLKAVQDELAEM 786
L+K E+ K D+ A+
Sbjct: 170 EAAVLIKEIEEEAKEEADKKAKE 192
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 43.8 bits (104), Expect = 5e-04
Identities = 69/397 (17%), Positives = 148/397 (37%), Gaps = 74/397 (18%)
Query: 431 KKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLK 490
+ RE+ E L +R + E + + Q K+Q L
Sbjct: 781 RAAREKRIEQLRAER---------------------EELAERYATLSFDVQ---KLQRLH 816
Query: 491 QELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQ 550
Q S + +++ E D +L++L R +L + E + Q ++E+ + G
Sbjct: 817 QAFSRFIGSHLAVAFE-ADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
Query: 551 TENK--PEEVKYLKSLLDEAKEEFKEQTTEIEQ----LRSEVEKLSE-ERRLLTVRSAEL 603
N+ P L + EE +EQ E E+ ++ L++ E + ++S
Sbjct: 876 ALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPE 935
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQ-EESLVYE---RLMSEKENLISQLKAD 659
++E ++DY A +T + +++ + Q YE ++++ +L +L+
Sbjct: 936 QFEQLKQDYQQAQQT--QRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR 993
Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE----- 714
LE +AE ++ EQ Q + + L ++ + LK+ + +K+
Sbjct: 994 LE--QAEQERTRAREQLRQAQAQ-----LAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046
Query: 715 --------------DRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
R ++ +++ +L +Q+T EA+ + ++ +E D
Sbjct: 1047 GVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHE 1106
Query: 761 TKHNQEKLLKIYEDRLKAVQD----------ELAEMK 787
+ + L+ V+D ELA +
Sbjct: 1107 MREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYLS 1143
Score = 42.6 bits (101), Expect = 0.001
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 31/237 (13%)
Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE-----EHEDMSGKLKEL 517
E ++++ E + + KL + + S+ E Y+ + + + +EL
Sbjct: 444 LEEFQAKEQEATEELLSLEQKLSVA--QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREL 501
Query: 518 TRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
R R+ + L ++ QL R+ E+E+ + + + E LL E + +
Sbjct: 502 LRRLREQ----RHLAEQLQQLRMRLSELEQRLRQQQRAER------LLAEFCKRLGKNLD 551
Query: 578 ---EIEQLRSE----VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE---LQEK 627
E+EQL+ E +E LSE R L +LEQ I A Q+
Sbjct: 552 DEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDA 611
Query: 628 LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
L + + EE + + + QL E ++ A +QAL +EI+ L
Sbjct: 612 LARLREQSGEEFEDSQDVT----EYMQQLLERERELTVERDELAARKQALDEEIERL 664
Score = 33.8 bits (78), Expect = 0.49
Identities = 32/187 (17%), Positives = 75/187 (40%), Gaps = 36/187 (19%)
Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN----QEKLLK--IYE 773
E ++ +L + EL + + E+ Q + ++ + E + N + LL
Sbjct: 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAK--EGLSALNRLLPRLNLLADETLA 893
Query: 774 DRLKAVQDELAEMK------------CAQLKPSLEASAATPSQYRKQLEDQVNSLKAELE 821
DR++ ++++L E + AQL+P + + P Q+ +QL+ +
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQF-EQLKQDYQQAQQTQR 952
Query: 822 QRHNVVRDL---------------QLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLE 866
L L + ++ L+ ++E+++Q++ + R L+ +
Sbjct: 953 DAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQ 1012
Query: 867 NQMAKIN 873
Q+A+ N
Sbjct: 1013 AQLAQYN 1019
Score = 33.8 bits (78), Expect = 0.63
Identities = 64/340 (18%), Positives = 139/340 (40%), Gaps = 58/340 (17%)
Query: 564 LLDEAKEEFKEQTTEIEQLRSEVEKLSEERR---LLTVRSAELEYELEQ-RDYLIAVKTD 619
L+EA E +E T QL +E +L E R L ++LE + + D+L V+T
Sbjct: 284 HLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT- 342
Query: 620 GAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD-LESNRAESNQSAHDEQALQ 678
A QEK++ + +E ERL E++N + + + E N A + + +
Sbjct: 343 -ALRQQEKIERYQADLEELE---ERL--EEQNEVVEEADEQQEENEARAEAA-------E 389
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKD----------IAELKT 728
+E+ L S L D + + + + +Y++ ++ ++ + E +
Sbjct: 390 EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQA 449
Query: 729 KCEELTQQVTKLEADCQSY----------LNTIKNMEND-ERSTKHN--QEKLLKIYEDR 775
K +E T+++ LE ++ + + RS + +E L ++ E R
Sbjct: 450 KEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQR 509
Query: 776 LKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV----VRDLQ 831
A Q + M+ ++L+ L + + + L AE +R +L+
Sbjct: 510 HLAEQLQQLRMRLSELEQRL------------RQQQRAERLLAEFCKRLGKNLDDEDELE 557
Query: 832 LKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
+ + +L + ++++++ R L+ L+ ++ +
Sbjct: 558 QLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
Score = 32.2 bits (74), Expect = 1.7
Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 29/192 (15%)
Query: 406 EEYREVQEDFR--KMFEEQQTDWENNVKKLREQHEE--DLERQRKFYKTQIETLMTLVKN 461
+ RE+ R + EQ + +L ++ + ER E L KN
Sbjct: 496 DVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLA------EFCKRLGKN 549
Query: 462 QQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN 521
ED+ E + + ++++L + +SE + +L ++ E L+ +
Sbjct: 550 LDDEDELEQLQ-------EELEARLESLSESVSEARERRMALRQQLEQ----LQARIQRL 598
Query: 522 RDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLD---EAKEEFKEQTTE 578
+ +A+L + G + E+ + +Y++ LL+ E E E
Sbjct: 599 AARAPAWLAAQDALARLREQS-----GEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
Query: 579 IEQLRSEVEKLS 590
+ L E+E+LS
Sbjct: 654 KQALDEEIERLS 665
Score = 29.9 bits (68), Expect = 8.5
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 488 NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER 547
L++EL + + +M+ +L EL DL + + L+ + +
Sbjct: 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQ---DYQAASDHLNLVQTALRQ 346
Query: 548 GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
+ E +++ L+ L+E E +E + E+ + E EE
Sbjct: 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423). This
family represents a conserved region approximately 500
residues long within a number of Arabidopsis thaliana
proteins of unknown function.
Length = 446
Score = 42.4 bits (100), Expect = 8e-04
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 23/121 (19%)
Query: 432 KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKI----- 486
K RE E +ERQRK K QI+ L ++V+ +QAE D +E+ EA+ +I
Sbjct: 334 KAREVSELKMERQRK--KPQIDELESIVRLKQAEADMFQLKADEARREAERLQRIALAKT 391
Query: 487 ---------QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQ 537
+ LK LSE E + + L EE LK +RD + +E K+
Sbjct: 392 EKSEEEYASKYLKLRLSEAEEERQYLFEE-------LKLQEESHRDSDSMKMRMESKIRG 444
Query: 538 L 538
L
Sbjct: 445 L 445
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353).
Members of this family of uncharacterized proteins have
no known function.
Length = 319
Score = 41.8 bits (98), Expect = 0.001
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 19/219 (8%)
Query: 439 EDLERQRKFYKTQIETLMTLVKN-QQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
E + +R +K ETL +N +++E + E + ++ + K Q+L Q L +
Sbjct: 19 EKCQNERDQFKLMAETLQMRYRNLKKSERELELVAACQGDMKIKPGTKRQDLSQLLEKYR 78
Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
+ + LS + +++ + EL + + L + RVE M G + EE
Sbjct: 79 EENQQLSTDVQELRQRKAELQGDIKLLRQTIAQQ---------RVEFMGGGVR--ESFEE 127
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
L S L++ +E+ K+ +++ L E E++ ER ++ L EL +
Sbjct: 128 RNDLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQRKAHRLNNELS-----YLLG 182
Query: 618 TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQL 656
D + MEN++ +E + L E E + L
Sbjct: 183 GDPRRVVDVDALVMENRYLKEKI--NTLEEESELIKMTL 219
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 41.8 bits (99), Expect = 0.001
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 30/193 (15%)
Query: 528 NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
K+L R +EE ++ A+T K L EAKEE + +LR+E+E
Sbjct: 24 EKKLGSAEELAKRIIEEAKKEAET--------LKKEALLEAKEE-------VHKLRAELE 68
Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
+ +ERR R LE L QR+ + K + ++ +E L+ E + + +
Sbjct: 69 RELKERRNELQR---LERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125
Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
E E LI++ + +LE S + E+A + ++ + +++ + I + E+
Sbjct: 126 ELEELIAEQREELER---ISGLTQ--EEAKEILLEEV------EEEARHEAAKLIKEIEE 174
Query: 708 YYAVMKEDRKTKE 720
A + D+K KE
Sbjct: 175 -EAKEEADKKAKE 186
Score = 40.3 bits (95), Expect = 0.004
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 29/158 (18%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
KKE + +EE +++ + + +E++ + + ++L Q EE L+R
Sbjct: 49 KKEALLEAKEEVHKLRAELERELKERRNELQRLERRLL-QREETLDR------------- 94
Query: 457 TLVKNQQAEDDSEDETLNESAIEAQHKLK-IQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
+ D ++E L + E +K K + ++EL EL A+ + EE E +SG
Sbjct: 95 -----KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQR---EELERISG--- 143
Query: 516 ELTREN-RDLVTKNKELEGKVAQLSRRVEEMERGAQTE 552
LT+E ++++ + E E + + ++ ++E+E A+ E
Sbjct: 144 -LTQEEAKEILLEEVEEEAR-HEAAKLIKEIEEEAKEE 179
Score = 36.4 bits (85), Expect = 0.070
Identities = 41/198 (20%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 401 EYQIREEYREVQEDFRKMFEEQQTDWENNVK-KLREQHEEDLERQRKFYKTQIETLMTLV 459
+ ++ +E +++ EE + + E K L E EE + + +
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAEL------------ 67
Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
E + ++ +E + L Q L+ K +SL ++ E++ K KEL+
Sbjct: 68 -----ERELKERRNELQRLERR-------LLQREETLDRKMESLDKKEENLEKKEKELSN 115
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
+ ++L K +ELE +A+ +E + Q E K + LL+E +EE + + ++
Sbjct: 116 KEKNLDEKEEELEELIAEQREELERISGLTQEEAK-------EILLEEVEEEARHEAAKL 168
Query: 580 -----EQLRSEVEKLSEE 592
E+ + E +K ++E
Sbjct: 169 IKEIEEEAKEEADKKAKE 186
Score = 29.9 bits (68), Expect = 7.2
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 804 QYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLK 863
+ R +LE EL++R N ++ L+ +LLQ+ E ++ ++K ++ +++ L
Sbjct: 62 KLRAELE-------RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELS 114
Query: 864 GLENQ 868
E
Sbjct: 115 NKEKN 119
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 42.1 bits (99), Expect = 0.002
Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 68/356 (19%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
E + + E+ + K R + + L+R+ + L + E
Sbjct: 605 AEMEDWLAERATAREQVRA-----YFKARAELDALLDRRARLRAALRAALKAVAIVLPGE 659
Query: 466 DDSEDETLNESAIEAQHKL---------KIQNLKQELSELEAKYKSLSEEHEDMSGKLK- 515
+ +E L +E K ++++ ++ L E E ++ E +
Sbjct: 660 ELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYD 719
Query: 516 --------------------ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKP 555
EL + ++ + +L ++A + R + E + +
Sbjct: 720 ALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEA 779
Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE------- 608
+ L + DE K++ + EKL+EE +E L+
Sbjct: 780 VAPEMLGTPADETARALKQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLT 839
Query: 609 ---------QRDYLIAV--KTDGAEELQEKLDYMENKFQEESLVYER--LMSEK------ 649
+ L+A ++D EL++++ +E L++E
Sbjct: 840 ALLRAARCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPD 899
Query: 650 --ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH 703
+ +L D+E E N+ A + A ++E+ + D T +L+A+
Sbjct: 900 ELPARLEELARDIEELEEELNELAQEVGAAKQELARM-----DGGSTAAELEAERE 950
Score = 36.3 bits (84), Expect = 0.087
Identities = 65/459 (14%), Positives = 132/459 (28%), Gaps = 82/459 (17%)
Query: 361 ERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFE 420
+ + S D + + + E + ++E + R E E + + ++
Sbjct: 525 LEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQLEKELEVLELAL 584
Query: 421 EQQTDWENNVKKLREQHEEDL-ERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
+ L + + + + T V+ D L+ A
Sbjct: 585 ---AALREAWQAQWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDALLDRRARL 641
Query: 480 AQHKLKIQNLK------QELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG 533
+EL+EL + L EE E + + L RD +E E
Sbjct: 642 RAALRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEE 701
Query: 534 KVAQLSRRVEE---------MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT---EIEQ 581
+ + +E +E G P LL KE+ + I
Sbjct: 702 RHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQRIAA 761
Query: 582 LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLV 641
+ ++ + EE L E + L A+E L + ++ +
Sbjct: 762 MERDLARFEEEVEALA--------EAVAPEML----GTPADETARALKQRLKRARDTAAA 809
Query: 642 YERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAK 701
E+L ++E E +++A + + L + TI +L A
Sbjct: 810 AEKL-----------AEEIEEAEKEVSEAAAALDEAEARLTALLRAA--RCTTIEELLAA 856
Query: 702 IHKYEKYYAVMKEDRKTK---------------------------EKDIAELKTKCEELT 734
+ + + Y + K + + EL EEL
Sbjct: 857 VERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELARDIEELE 916
Query: 735 QQVTKLEADCQSYLNTIKNMEND--------ERSTKHNQ 765
+++ +L + + + M+ ER + Q
Sbjct: 917 EELNELAQEVGAAKQELARMDGGSTAAELEAERESLLAQ 955
Score = 36.3 bits (84), Expect = 0.098
Identities = 80/437 (18%), Positives = 150/437 (34%), Gaps = 55/437 (12%)
Query: 486 IQNLKQELSELEAK----------YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV 535
I +EL ELEA+ +K L + ++ +L L +E R L + + LE
Sbjct: 152 INVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERLR 211
Query: 536 AQL----SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSE 591
L R+ E + A E ++ EA+ E + +E L +E L
Sbjct: 212 RLLPLLAERKALEQQLAALGEVIDLPPDAVERYE-EARAELRAARRNLELLTERLEALQA 270
Query: 592 ERRLLTVRSAEL-------------------EYELEQRDYLIAVKTDGAEELQEKLDYME 632
E +++ L E +L R+ IA + A L ++
Sbjct: 271 ELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDA 330
Query: 633 NKFQEESLVYERLMSEK-ENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK 691
++ ESL E L + +A ++ ++ + E+ L++ L +L
Sbjct: 331 DEEAVESLRPSLAAKETVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVT 390
Query: 692 DKT-----------IGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKL 740
GD+ A + E+ AV K + + + EEL
Sbjct: 391 VPEPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPS 450
Query: 741 EADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELA-------EMKCAQLKP 793
Q++L + + +R + +L + E ++ A E A
Sbjct: 451 AEQVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARAR 510
Query: 794 SLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQ 853
Y L + S E + + + D L+ Q + +L+ Q E +++
Sbjct: 511 RDALWQDIRRGY--ALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARR 568
Query: 854 QQQQQRSPLKGLENQMA 870
+ +Q L+ LE +A
Sbjct: 569 RLEQLEKELEVLELALA 585
Score = 33.6 bits (77), Expect = 0.70
Identities = 74/471 (15%), Positives = 155/471 (32%), Gaps = 67/471 (14%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYK---------TQIETLMTLVKNQQAEDDSED 470
E+ + + + EEDLE + T+ E + D
Sbjct: 461 AEEIMQAKRQKRDRLLELEEDLETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRR 520
Query: 471 ETLNESAIEA------QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDL 524
+ + ++ + ++L + +SL ++ E +L++L +E
Sbjct: 521 GYALLEPTASAYEEAVESADQLADRLLREAQLVGELQSLRQQEEAARRRLEQLEKELE-- 578
Query: 525 VTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRS 584
LE +A L + A P E+ E++ + +
Sbjct: 579 -----VLELALAALREAWQAQWAAAGLPLTPAEM-----------EDWLAERATAREQVR 622
Query: 585 EVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYER 644
K E L R A L L +A+ EEL E L+ +E E+
Sbjct: 623 AYFKARAELDALLDRRARLRAALRAALKAVAI-VLPGEELAELLELARQLLEEA----EK 677
Query: 645 LMSEKENLISQLKADLESNRAESNQSAHDE--QALQKEIKNLGSLLVDKDKTIGDLKAKI 702
+ K +L +L D E E+ + HDE AL+ + L++ A
Sbjct: 678 QAARKASLDERL-RDAERALEEA-EERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGA 735
Query: 703 HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTK 762
+ +KE + +L+ + + + + + E + ++ +
Sbjct: 736 LDALELLQNIKEKLQA----ADDLRQRIAAMERDLARFEEEVEALAEAV-----APEMLG 786
Query: 763 HNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQ 822
++ + + RLK +D A A ++ ++ E +V+ A L++
Sbjct: 787 TPADETARALKQRLKRARDTAAA-------------AEKLAEEIEEAEKEVSEAAAALDE 833
Query: 823 RHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873
+ L + I L A +E+S ++ ++ + LE + +
Sbjct: 834 AEARLT--ALLRAARCTTIEELLAAVERSDTYRELRKR-IAALERTLVRAG 881
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 41.8 bits (98), Expect = 0.002
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQ 736
L+++IK L + L + +L+ +I +K D +K+ L+TK +
Sbjct: 411 LEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSA 470
Query: 737 VTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLE 796
K + QS +K E ++ N EK L E + K ++E A AQ S E
Sbjct: 471 KQKDKQSMQSMEKRLK----SEADSRVNAEKQLA-EEKKRKKEEEETAARAAAQAAASRE 525
Query: 797 ASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLK 833
A + Q ++ LE ++ L+ +L+ + R L+ +
Sbjct: 526 ECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKE 562
Score = 38.7 bits (90), Expect = 0.017
Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 22/246 (8%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
+ ++Q +Q SEL + L+ + L +L +EN L TK + + + +
Sbjct: 419 QAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSM 478
Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE 602
+ ME+ ++E V K L +E K + +E+ T E L +
Sbjct: 479 QSMEKRLKSEAD-SRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQD 537
Query: 603 LEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLES 662
LE E+++ ++ + +K +E+ +E + QE Y+ E E L+S L+A +
Sbjct: 538 LEMEIKKLEHDLKLK-------EEECRMLEKEAQELRK-YQESEKETEVLMSALQAMQDK 589
Query: 663 NRA-ESNQSAHDEQAL---------QKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
N E++ SA L +++++ + ++ I DLK+KI AVM
Sbjct: 590 NLMLENSLSAETRLKLDLFSALGDVKRQLEIAHGAIYKREAEIVDLKSKI---ADILAVM 646
Query: 713 KEDRKT 718
E R
Sbjct: 647 PESRIR 652
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 40.1 bits (94), Expect = 0.002
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
Q+ + E L E + +L L++EL +LE + L E ED+ L+ L
Sbjct: 64 APVQSVRPQKLEELQGELSELKQQL--SELQEELEDLEERIAELESELEDLKEDLQLLRE 121
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMER--GAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
+ L + + LE + +L++ + E+ + + E EE++ L+ L +E +E +
Sbjct: 122 LLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQS 181
Query: 578 EIEQL 582
+EQL
Sbjct: 182 LLEQL 186
Score = 33.2 bits (76), Expect = 0.32
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENK 634
Q+ ++L +LSE ++ L+ EL+ ELE + IA E+L+E L +
Sbjct: 67 QSVRPQKLEELQGELSELKQQLS----ELQEELEDLEERIAELESELEDLKEDLQLLREL 122
Query: 635 FQEES-------LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSL 687
+ + L E L L+ ++E R E + + Q LQ+ I+ L SL
Sbjct: 123 LKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSL 182
Query: 688 L 688
L
Sbjct: 183 L 183
Score = 33.2 bits (76), Expect = 0.39
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
K++ L+ ELSEL+ + L EE ED+ ++ EL E DL + L
Sbjct: 73 KLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLR------------ 120
Query: 545 MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
E +K L+ L+ +E KE E+ +LR ++ + EE R R E
Sbjct: 121 -----------ELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENL 169
Query: 605 YELEQR 610
L++
Sbjct: 170 QRLQEA 175
Score = 29.0 bits (65), Expect = 8.7
Identities = 27/139 (19%), Positives = 64/139 (46%), Gaps = 23/139 (16%)
Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
+ + + +++ELK + EL +++ LE + +++++ D + +LLK
Sbjct: 71 PQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLL----RELLKSL 126
Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQL 832
E+RL+++++ + E+ K+L + L+ E+E+ + LQ
Sbjct: 127 EERLESLEESIKEL-------------------AKELRELRQDLREEVEELREELERLQE 167
Query: 833 KLLQKGEMINNLKAQMEKS 851
L + E I L++ +E+
Sbjct: 168 NLQRLQEAIQELQSLLEQL 186
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 40.8 bits (96), Expect = 0.003
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 25/160 (15%)
Query: 457 TLVKNQQAEDDSEDETLNES--AIEAQHKLKIQNLKQELSELEAKYKSLSE------EHE 508
L+K QQ+ +S TL I AQ I+ L+ EL+ L+A+ ++L + E
Sbjct: 126 ELIKGQQSLFESRKSTLRAQLELILAQ----IKQLEAELAGLQAQLQALRQQLEVISEEL 181
Query: 509 DMSGKLKE--LTRENRDLVTKNKELEGKVAQLSRRVEEME------RGAQTENKPEEVKY 560
+ KLKE L L ELE + A+ + +E + E + E +
Sbjct: 182 EARRKLKEKGLVSRLELL-----ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQI 236
Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS 600
++ +E EE E + +LR + K + + L +RS
Sbjct: 237 EQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS 276
Score = 31.9 bits (73), Expect = 1.9
Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVE--EMERG---AQTENKPEEVKYLKSLLDEAK 569
+ + + ++ L ++ + +++ E E AQ + ++++ + L EA+
Sbjct: 126 ELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL-EAR 184
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
+ KE+ L S +E L ER + E E + V +ELQ +
Sbjct: 185 RKLKEK-----GLVSRLELLELERERAEAQGELGRLEAE-----LEVLKRQIDELQLERQ 234
Query: 630 YMENKFQEE 638
+E F+EE
Sbjct: 235 QIEQTFREE 243
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 40.4 bits (95), Expect = 0.005
Identities = 55/298 (18%), Positives = 112/298 (37%), Gaps = 43/298 (14%)
Query: 415 FRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLN 474
R + E+ V ++R +++ER+ + +++I+ L +K D +
Sbjct: 12 IRDLNEDVSAFQRKFVNEVRRC--DEVERKLRKLESKIKKLGIPLK-----DTGGKPDVP 64
Query: 475 ESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGK 534
S + +I +L+ E+ E+E +SL +E ++ L L E + + +N E +
Sbjct: 65 PSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVL-DEEKSFLDENLEELSE 123
Query: 535 VAQLSRRVEEMERGAQTEN--------KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEV 586
++ L + RGA+ E+++ + L A + + EIE+ +
Sbjct: 124 LSNLD-IDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYI-RQAEIEEPLEDP 181
Query: 587 EK------LSEERRLLTVRS--AELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEE 638
+K + L V+ +EL + E E + + + +E
Sbjct: 182 KKTVFIIFFVGKEDLDKVKKILDSFGFELYDVP-------ETEGERSELISKVNKRIEE- 233
Query: 639 SLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQ-ALQKEIKNLGSLLVDKDKTI 695
L E S L+ L + A DEQ + +K + +L KT+
Sbjct: 234 ------LQRVLEQTESHLEKVLV--KIADELLAWDEQVSKEKAVYETLNLFNYDTKTL 283
Score = 32.0 bits (73), Expect = 1.7
Identities = 51/287 (17%), Positives = 101/287 (35%), Gaps = 60/287 (20%)
Query: 486 IQNLKQELSELEAKYKSLSEEH---EDMSGKLKELTRENRDLVTKNKELEGK-VAQLSRR 541
I++L +++S + K+ E +++ KL++L + + L K+ GK S+
Sbjct: 12 IRDLNEDVSAFQRKF---VNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKE 68
Query: 542 VEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSA 601
++E EE+ L++ + E EE E L E+ +L E +L +
Sbjct: 69 FLDLE---------EEILDLEAEIKEV-EENLES------LEKEINELEEWLNVLDEEKS 112
Query: 602 ELEYELEQRDYL--------------------IA--VKTDGAEELQEKLDYMENKFQEES 639
L+ LE+ L +A + + E + +L + ++
Sbjct: 113 FLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQA 172
Query: 640 LVYERLMSEK----------ENLISQLKADLESNRAE----SNQSAHDEQALQKEIKNLG 685
+ E L K + + ++K L+S E + + K K +
Sbjct: 173 EIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGERSELISKVNKRIE 232
Query: 686 SLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
L ++T L+ + K E KEK + E
Sbjct: 233 ELQRVLEQTESHLEKVLVKIADELLAWDEQVS-KEKAVYETLNLFNY 278
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 38.7 bits (91), Expect = 0.005
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 477 AIEAQHKLKIQNLKQELSELE----AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
+ QH+ +K +++ KSL EE +M + + ++ +NK L
Sbjct: 2 ELMKQHEKAFNEIKNYYNDITHNNLELIKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLV 61
Query: 533 GKVAQLSRRVEEMERGAQTENK-PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSE 591
+ + VEE+ + + K + +K LK+ L E ++E K E E L EK+
Sbjct: 62 EPLKKAEEEVEELRKKLKDYEKDKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVER 121
Query: 592 ERRLLTVRSAELEYELEQR 610
ER L + +++Q+
Sbjct: 122 ERDELYDKFEAAIQDVQQK 140
Score = 33.7 bits (78), Expect = 0.25
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 45/167 (26%)
Query: 361 ERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFE 420
E+A E+ +Y+ + E I+ L+ +AE K+ E + E+ ++ +++ E
Sbjct: 8 EKAFNEIKNYYNDITHNNLELIKSLKEEIAE-----MKKNEEHNEKLMAEIAQENKRLVE 62
Query: 421 EQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA 480
+KK E+ EE L ++ K Y
Sbjct: 63 --------PLKKAEEEVEE-LRKKLKDY-------------------------------E 82
Query: 481 QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTK 527
+ K ++NLK L ELE + K+L E E + + +++ RE +L K
Sbjct: 83 KDKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELYDK 129
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 40.2 bits (94), Expect = 0.005
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
++++AK + E EI L +EKLS + L ++ LE L++++ L E
Sbjct: 497 FIIEQAKTFYGEFKEEINVL---IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEME 553
Query: 623 ELQEKLDYMENKFQEESLVYER-LMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
EL+E+ + + ++E+ + L E E++I +LK + ++ KE
Sbjct: 554 ELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIH--KAKEIKSIEDLVKLKET 611
Query: 682 KNL 684
K
Sbjct: 612 KQK 614
Score = 34.8 bits (80), Expect = 0.28
Identities = 34/176 (19%), Positives = 76/176 (43%), Gaps = 9/176 (5%)
Query: 435 EQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELS 494
EQ + ++ IE L L K + +++ ++ L E E K +++ +EL
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKE--QEKLKK-ELEQEMEEL- 555
Query: 495 ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
E + E ++ LK L +E ++ + KE + A+ + +E++ + +T+ K
Sbjct: 556 -KERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQK 614
Query: 555 -PEEVKYLK--SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRL-LTVRSAELEYE 606
P++ + + D+ + + Q +I Q+ + + + V +ELE
Sbjct: 615 IPQKPTNFQADKIGDKVRIRYFGQKGKIVQILGGNKWNVTVGGMRMKVHGSELEKI 670
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 40.2 bits (94), Expect = 0.007
Identities = 68/391 (17%), Positives = 149/391 (38%), Gaps = 57/391 (14%)
Query: 421 EQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA 480
Q T N++K E+++E+ E+ + I + + D + N
Sbjct: 724 NQYTIKYNDLKSSIEEYKEEEEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNTYEEFL 783
Query: 481 QHKLKIQNLKQELS-------ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG 533
Q+K I N + ++S E + + L + + KL+ T +N +
Sbjct: 784 QYKDTILNKENKISNDINILKENKKNNQDLLNSYNILIQKLEAHTEKN----------DE 833
Query: 534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQL--------RSE 585
++ QL ++ + + +E ++D ++ + I + RS
Sbjct: 834 ELKQLLQKFPTEDENLNLKELEKEFNENNQIVDNIIKDIENMNKNINIIKTLNIAINRSN 893
Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
K E L +L+ +LEQ +I TD + EKL+ + N +E+ + ++L
Sbjct: 894 SNKQLVEH--LLNNKIDLKNKLEQHMKII--NTDNIIQKNEKLNLLNNLNKEKEKIEKQL 949
Query: 646 MSEKENLISQLKADLES-----NRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKA 700
+ I+ LK +E ++++ N + +D L+K K + K+
Sbjct: 950 ---SDTKINNLKMQIEKTLEYYDKSKENINGNDGTHLEKLDK--------EKDEWEHFKS 998
Query: 701 KIHKYEKYYAVMKEDRKT------------KEKDIAELKTKCEELTQQVTKLEADCQSYL 748
+I K Y ++ + +K I E + EE Q L ++ L
Sbjct: 999 EIDKLNVNYNILNKKIDDLIKKQHDDIIELIDKLIKEKGKEIEEKVDQYISLLEKMKTKL 1058
Query: 749 NTIKNMENDERSTKHNQEKLLKIYEDRLKAV 779
++ + ++ ++ +K+ E++++A+
Sbjct: 1059 SSFHFNIDIKKYKNPKIKEEIKLLEEKVEAL 1089
Score = 34.4 bits (79), Expect = 0.36
Identities = 66/358 (18%), Positives = 141/358 (39%), Gaps = 31/358 (8%)
Query: 427 ENNVKKLREQHEEDL-ERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLK 485
NN+ K +E+ E+ L + + K QIE + + + D T E + K +
Sbjct: 935 LNNLNKEKEKIEKQLSDTKINNLKMQIEKTLEYYDKSKENINGNDGTHLEKLDKE--KDE 992
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKE--LTRENRDLVTKNKELEGKVAQLSRRVE 543
++ K E+ +L Y L+++ +D+ K + + ++ + K KE+E KV Q +E
Sbjct: 993 WEHFKSEIDKLNVNYNILNKKIDDLIKKQHDDIIELIDKLIKEKGKEIEEKVDQYISLLE 1052
Query: 544 EMERGAQTENKPEEVKYLKS-LLDEAKEEFKEQTTEIE-QLRSEVEKLSEERRLLTVRSA 601
+M+ + + ++K K+ + E + +E+ + ++ KL E +
Sbjct: 1053 KMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIKNKSHEHVV 1112
Query: 602 ELEYELEQRDYLIAVKTDGAEELQEKL-------------DYMENKFQEESLVYERL--- 645
+ E ++ K E++ +++ D N+ E + YER+
Sbjct: 1113 NADKEKNKQTEHYNKKKKSLEKIYKQMEKTLKELENMNLEDITLNEVNEIEIEYERILID 1172
Query: 646 -----MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKA 700
++ + + ++ES + + +Q + + + DK
Sbjct: 1173 HIVEQINNEAKKSKTIMEEIESYKKDIDQVKKNMSKERNDHLTTFEYNAYYDKAT-ASYE 1231
Query: 701 KIHKYEKYYAVMKED--RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEN 756
I + +K + R T ++ E+K + QQV K ++ L+ IKNM
Sbjct: 1232 NIEELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVIKENNKMENALHEIKNMYE 1289
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 39.4 bits (93), Expect = 0.008
Identities = 74/383 (19%), Positives = 153/383 (39%), Gaps = 75/383 (19%)
Query: 470 DETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT---RENRDLVT 526
+E L E A E K + + K E++E+E+ + E+ E + +L+EL +NR+ V
Sbjct: 85 EEQLFE-AEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVE 143
Query: 527 K----------------------NKELEGKVAQLSRRVEEMERGAQT----------ENK 554
+ ELE ++ L + ++ +
Sbjct: 144 QLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQL 203
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTE----IEQLRSEVEKLSEERRLLT-----VRSAELEY 605
EE+ L+ +++E E KE TE +++L++ +L EE L +L+
Sbjct: 204 EEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKE 263
Query: 606 ELEQ-RDYLIAVKTDGAEE----LQEKLDYMENKFQEESLVYERLMSEKENLISQLKADL 660
++++ L + D AEE +QE++D + + + E + + + L L+
Sbjct: 264 QIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAK 323
Query: 661 ESNR---------AESNQSAHDE----QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
E N+ +S E + L+K++++L ++ +I + E
Sbjct: 324 EQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD-------EITERIAEQEI 376
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEK 767
Y+ ++E+ + K + E++ + E+L++ + L D ++ N K EK
Sbjct: 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436
Query: 768 -----LLKIYEDRLKAVQDELAE 785
L + Y + V DE+
Sbjct: 437 SNLPGLPEDYLEMFFEVSDEIEA 459
Score = 29.4 bits (67), Expect = 9.8
Identities = 54/295 (18%), Positives = 112/295 (37%), Gaps = 56/295 (18%)
Query: 380 ETIRLLEARLAEFEGFDKKEFE---------------YQIREEYREVQ---EDFRKMFEE 421
+ LE +L E + +F Q+ EE ++ E+ ++ +E
Sbjct: 165 PALDELEKQLENLEE-EFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKE 223
Query: 422 QQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQ 481
QT+ + +++L+ + E +E IE + +K Q E N + +E
Sbjct: 224 LQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDE--------NLALLEE- 274
Query: 482 HKLKIQNLKQELSELEAKYKSLSE--EHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
L + +++ E++ + L + E E V K +E L
Sbjct: 275 --LDLDEAEEKNEEIQERIDQLYDILERE----------------VKARKYVEKNSDTLP 316
Query: 540 RRVEEMERGAQTENKPEEVKYLKS---LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
+E + Q + EE+ +K L + E ++ ++E L + ++++E
Sbjct: 317 DFLEHAK--EQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ 374
Query: 597 TVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYM---ENKFQEESLVYERLMSE 648
+ +EL+ ELE+ + E+L E L + E + +E+ Y + E
Sbjct: 375 EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 39.3 bits (91), Expect = 0.010
Identities = 71/350 (20%), Positives = 158/350 (45%), Gaps = 9/350 (2%)
Query: 453 ETLMTLVKNQQAEDDSEDETLNESAIEAQHKLK-IQNLKQELSELEAKYKSLSEEHEDMS 511
+ L+ L++ ++ E + L +H LK +++LK EL + + K L+ + +
Sbjct: 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLL 498
Query: 512 GKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEE 571
+ KELT+E D+ + K+ + + ++ E M + Q EN E+ L+ L+ +EE
Sbjct: 499 LENKELTQEASDMTLELKKHQEDIINCKKQEERMLK--QIENLEEKEMNLRDELESVREE 556
Query: 572 FKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYM 631
F ++ E++ + E+ + ++ + LE + + + + + E+L
Sbjct: 557 FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQE 616
Query: 632 ENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK 691
+++ + ++ E +++L+ +L S + + + + QKEI++ + +
Sbjct: 617 NKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDN---YQKEIEDKK---ISE 670
Query: 692 DKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTI 751
+K + +++ ++ + KE K + IAE+ E+ Q K+ + S L
Sbjct: 671 EKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLY 730
Query: 752 KNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
KN E ++ S K E L + L +++ +L K + K +EA T
Sbjct: 731 KNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENT 780
Score = 38.5 bits (89), Expect = 0.017
Identities = 100/494 (20%), Positives = 210/494 (42%), Gaps = 65/494 (13%)
Query: 398 KEFEYQIREEYREVQEDFRK-------MFEEQQTDWENNVK----KLREQHEE----DLE 442
K++EY+ REE R+V D FEE + EN KL+E HE+ + E
Sbjct: 172 KKYEYE-REETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEE 230
Query: 443 RQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
+++ + + + L++ + E+ +D T + + + K L+++ + K
Sbjct: 231 YKKEINDKEKQVSLLLIQITEKENKMKDLTF----LLEESRDKANQLEEKTKLQDENLKE 286
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
L E+ + ++ +L+++ + ++ K LE + ++ + ++ + E + EE+ K
Sbjct: 287 LIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTE--EKEAQMEELNKAK 344
Query: 563 SLLDEAKEEFKEQTTEIEQL-RSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621
+ EF+ T +E+L R+E ++L + L + + EL+ + + + + K +
Sbjct: 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKE 404
Query: 622 EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
EL+E +++++E E L+ E Q + L+ +
Sbjct: 405 VELEE---------------LKKILAEDEKLLD-----------EKKQFEKIAEELKGKE 438
Query: 682 KNLGSLLVDKDKTIGDLKAK---IHKYEKYYAVMKEDRKTKEKDI----AELKTKCEELT 734
+ L LL ++K I DL+ + I E++Y ED KT+ + EL C++L
Sbjct: 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLL 498
Query: 735 QQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPS 794
+ +L + +K + D + K +E++LK Q E E K L+
Sbjct: 499 LENKELTQEASDMTLELKKHQEDIINCKKQEERMLK---------QIENLEEKEMNLRDE 549
Query: 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ 854
LE+ Q +++ +++ + V + ++ NNLK Q+E +
Sbjct: 550 LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN 609
Query: 855 QQQQRSPLKGLENQ 868
++ K L+ +
Sbjct: 610 IEELHQENKALKKK 623
Score = 34.7 bits (79), Expect = 0.28
Identities = 89/472 (18%), Positives = 190/472 (40%), Gaps = 26/472 (5%)
Query: 421 EQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEA 480
E+ W+ +++ +Q E L+ RK + Q + + L Q E++ L E E
Sbjct: 88 EKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQEL----QFENEKVSLKLEEEIQEN 143
Query: 481 QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSR 540
+ +K N + L L + + S E +E TR+ + N E + R
Sbjct: 144 KDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELR 203
Query: 541 RVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS 600
E R E+ + ++ L +E K+E ++ ++ L ++ + + + LT
Sbjct: 204 VQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLL 263
Query: 601 AELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL-------- 652
E + Q + ++ + +EL EK D++ + ++ + +R MS ++ L
Sbjct: 264 EESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIAT 323
Query: 653 --ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYA 710
I QL + E+ E N++ + E + L + +T K K
Sbjct: 324 KTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIIT 383
Query: 711 VMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLK 770
+ + + ++ +++ + K E +++ K+ A+ + L+ K E K +++L+
Sbjct: 384 MELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIF 443
Query: 771 IYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQ----------VNSLKAEL 820
+ + R K + D E++ +K S E + +LE + + L E
Sbjct: 444 LLQAREKEIHD--LEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLEN 501
Query: 821 EQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI 872
++ D+ L+L + E I N K Q E+ +Q + L +++ +
Sbjct: 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV 553
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 38.7 bits (90), Expect = 0.015
Identities = 82/398 (20%), Positives = 153/398 (38%), Gaps = 100/398 (25%)
Query: 423 QTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ------------QAEDDSED 470
Q D + + + + + Q+E L+ +++N QA +D E
Sbjct: 103 QRDEAIAAID--NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEK 160
Query: 471 ETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530
+ A++ KI L+ LSE +A+ K ++E + ++L + +L+ +
Sbjct: 161 ILTEKEALQG----KINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGAT 216
Query: 531 LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLS 590
V LS+ ++ + + EN LL + + K + E+ + V KL
Sbjct: 217 EGLCVHSLSKELDVL----KEEN---------MLLKDDIQFLKAELIEVAETEERVFKLE 263
Query: 591 EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKE 650
+ER LL ELE + + E+ + L Y+ + E
Sbjct: 264 KERSLLDASLRELESKF--------------------IVAQEDVSKLSPLQYDCWWEKVE 303
Query: 651 NLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYA 710
NL Q D +N+ E +L++D+++ DL+ K+ K E
Sbjct: 304 NL--QDLLDRATNQVEK-----------------AALVLDQNQ---DLRDKVDKLEA--- 338
Query: 711 VMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL-- 768
KE ++++ + EL QQ KL +ER + E
Sbjct: 339 ------SLKEANVSKFSSYKVELLQQKLKLL---------------EERLQASDHEIHSY 377
Query: 769 LKIYEDRLKAVQDELAEMKCAQLKPSLEASA-ATPSQY 805
+++Y++ +K QD L+++K K SLE A PS++
Sbjct: 378 IQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEF 415
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 37.7 bits (88), Expect = 0.017
Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 488 NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER 547
N+ + L + E K L + DM +L + + + + K+LE K+ + R E++E
Sbjct: 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73
Query: 548 GAQTE-NKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
A+ E L EA EE + + L +E+++ E+ L + A LE +
Sbjct: 74 KAELALQAGNE-----DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQK 128
Query: 607 LEQ-RDYLIAVK-TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
+ + R A+K A + QEK++ S + E I + +A E+
Sbjct: 129 IAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAM--AAFERMEEKIEEREARAEA-A 185
Query: 665 AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHK 704
AE + + D L KE G D + LKA++
Sbjct: 186 AELAEGSGD--DLDKEFAQAG-AQSAVDSRLAALKARMKG 222
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 38.2 bits (89), Expect = 0.019
Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 16/256 (6%)
Query: 467 DSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVT 526
+E E E + + L + L+ + D ++ + + +
Sbjct: 87 PGNEEEAEELKEEIEEETWESILNKVKEYLDIENVEPFLLKSDALERISDRIEDGNEDRE 146
Query: 527 KNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEV 586
+ +ELE A+ + R K E E++KE + +
Sbjct: 147 EAEELEA--ARKNVRDFAPVPWIPPAPKIYIYIVSIFNEKELSEKYKEFLLKKRNGL-LL 203
Query: 587 EKLSEERRLLTVRSAELE-----YELEQRDYLIAVKTDGAEELQEKLDYMENKFQEE--S 639
+KL R L E E Y + K D E+L+ L+ E
Sbjct: 204 DKLGGRARKEYRSVCGLLAAAWKLEKETEQYSLFAKDDLEEDLKLLLEAGERLCPLCLIK 263
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
+ + EK LI ++ + NR E + + +E+ + + +
Sbjct: 264 RLLPERLKEKLVLIDEVIKRSKRNREEPRLKYENFREELRELLE------KEPEIVYLFI 317
Query: 700 AKIHKYEKYYAVMKED 715
YYA++ D
Sbjct: 318 KAKKNPGPYYALLMAD 333
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 38.0 bits (88), Expect = 0.019
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 548 GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607
G +T + E LK +E KE+ +E E E+L E+E+L E + R LE E
Sbjct: 120 GLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179
Query: 608 EQRDYLIAVKTDGAEELQEKLDYMENKFQ-EESLVYERLMSEKENL 652
+ + ++ +L+++ D +E + E + L+ E NL
Sbjct: 180 SRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNL 225
Score = 36.8 bits (85), Expect = 0.040
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
K K++ L++E EL + + L E+E++ +LK L EN L K+L G+V L +R
Sbjct: 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200
Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
+E+E G + + +K L+ A ++ + Q + EVE L
Sbjct: 201 DELEPGVELPEEELISDLVKETLNLAPKDIEGQGYIYAEDEKEVEIL 247
Score = 34.9 bits (80), Expect = 0.16
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 30/114 (26%)
Query: 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVK 559
Y L E++E++ KL+EL +E +L+ + +ELE + ++ R++ +E
Sbjct: 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV------------ 177
Query: 560 YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
E +L ++KL E L R ELE +E +
Sbjct: 178 ------------------ENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 37.8 bits (88), Expect = 0.029
Identities = 25/144 (17%), Positives = 60/144 (41%), Gaps = 18/144 (12%)
Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE 556
E +L E E + + + +E R + + E ++ Q + Q + + E
Sbjct: 48 EKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQ---------KEEQLDARAE 98
Query: 557 EVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA- 615
++ L++ L+E ++ + E+E+L +++ L V E + R L+
Sbjct: 99 KLDNLENQLEEREKALSARELELEELEKQLD-----NELYRVAGLTPE---QARKLLLKL 150
Query: 616 VKTDGAEELQEKLDYMENKFQEES 639
+ + EE +++ +E + E+
Sbjct: 151 LDAELEEEKAQRVKKIEEEADLEA 174
Score = 32.0 bits (73), Expect = 1.8
Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 6/151 (3%)
Query: 441 LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQH------KLKIQNLKQELS 494
L+++++ K L K + + ++ E + ++ + + + L++E
Sbjct: 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEE 84
Query: 495 ELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
L K + L E + +L + L + ELE QL + + + +
Sbjct: 85 RLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQAR 144
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
+K L + L+E K + ++ E L +E
Sbjct: 145 KLLLKLLDAELEEEKAQRVKKIEEEADLEAE 175
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 37.9 bits (88), Expect = 0.032
Identities = 88/409 (21%), Positives = 167/409 (40%), Gaps = 67/409 (16%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
NL Q+L + K EE ++++ + EL ++ L + L+ + +L R+ ++
Sbjct: 167 AGNLDQQLKKALEDLKEAQEEKDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLAQL 226
Query: 546 ERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEY 605
E + N+ KY +++EQL+ E +L R ++ ELE
Sbjct: 227 EGSSLGPNQLGSKKYN------------LLQSQLEQLQEENFRLEAARDDYRIKCEELEK 274
Query: 606 ELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRA 665
EL + + T A E Q D ++ ++ E + +L+A +E+ +
Sbjct: 275 ELAELQHRNDELTSLAAESQALKDEID------------VLRESSDKAKKLEAQVETYK- 321
Query: 666 ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAE 725
+ D L++++K L + L+ ++ K + +T ++ + E
Sbjct: 322 ---KKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKK----ANAARGQLETYKRQVQE 374
Query: 726 LKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
L K E +++ KLE + K +E + + +E+LL D L+ +EL
Sbjct: 375 LHAKLSEESKKADKLEFEY-------KRLEEKLEALQKEKERLL-AERDSLRETNEEL-- 424
Query: 786 MKCAQLK------------PSLEASAA--TPSQYRK-----QLEDQVNSLKAELEQRHNV 826
+C Q + PS + AA PS+YR+ Q E+++ L E +
Sbjct: 425 -RCGQAQQDQLTQADAGTSPSGDNLAAELLPSEYREKLIRLQHENKMLRLGQE-GSENER 482
Query: 827 VRDLQLKLLQKGEMINNLKAQMEKSQQQ----QQQQRSPLKGLENQMAK 871
+ +LQ L N L+ Q+ + Q+ QQQ K L+ Q +K
Sbjct: 483 ITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSK 531
Score = 30.2 bits (68), Expect = 6.7
Identities = 55/260 (21%), Positives = 111/260 (42%), Gaps = 26/260 (10%)
Query: 399 EFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTL 458
+ Q+++ +++E + E Q E + + L Q E + + + E L
Sbjct: 169 NLDQQLKKALEDLKEAQEEKDELAQRCHELDKQVLLLQEE------KNSLQQENEKLQER 222
Query: 459 VKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
+ Q E S S + +++ L++E LEA +D K +EL
Sbjct: 223 L--AQLEGSSLGPNQLGSKKYNLLQSQLEQLQEENFRLEAA-------RDDYRIKCEELE 273
Query: 519 RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
+E +L +N EL A+ +E++ ++ +K K L++ + E +K++ +
Sbjct: 274 KELAELQHRNDELTSLAAESQALKDEIDVLRESSDK---AKKLEAQV----ETYKKKLED 326
Query: 579 IEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEE 638
+ LR +V+ L E + + +LE EL++ + ++QE + K EE
Sbjct: 327 LNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQE----LHAKLSEE 382
Query: 639 SLVYERLMSEKENLISQLKA 658
S ++L E + L +L+A
Sbjct: 383 SKKADKLEFEYKRLEEKLEA 402
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 37.6 bits (88), Expect = 0.032
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
L+QE+ L+ + + + E + +E L ELE K +L ++E++
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQL- 203
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFK--EQTTEI---EQLR 583
+ E E + K + D+A + + E+ T I +QLR
Sbjct: 204 QEKAAETSQERKQKRKEITDQAAKRLELSEEETRILIDQQLR 245
Score = 33.0 bits (76), Expect = 1.0
Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 573 KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME 632
++ + L+ EV L ++ L A+ + E +
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQ--------------------- 176
Query: 633 NKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
+E + E L +E E +L+A LE + ++ +++ + + +KEI
Sbjct: 177 ----QELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEI 221
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 37.0 bits (86), Expect = 0.051
Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 60/274 (21%)
Query: 540 RRVEEMERGAQTENKPEE-------VKYLKSLLDEAKE---EFKEQTTEIEQLRSEVEKL 589
+E++E G + + E+ L SLL E + K + L EVEKL
Sbjct: 31 VHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKL 90
Query: 590 SEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK 649
E + L+E + E + S E L +
Sbjct: 91 EAEL----------------------------KSLEEVIKPAE----KFSSEVEELTRKL 118
Query: 650 ENLISQLKADLESNRAESNQSAHDEQ--ALQKEIKNLGSLLVDKDKTIGD-LKAKIHKYE 706
E +S+L +LE + ++ L LLV + L+A + E
Sbjct: 119 EERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIE 178
Query: 707 KYYAVMKEDRK--------TKEKDIAELKTKCEELT---QQVTKLEADCQSYLN----TI 751
A+ E+ + +D+ ++ EL +V + + ++ I
Sbjct: 179 DEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVI 238
Query: 752 KNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
++++ S + E L + + L AV++ L
Sbjct: 239 AEIQDELESLRSELEALAEKIAEELLAVREILEI 272
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 34.5 bits (80), Expect = 0.061
Identities = 26/96 (27%), Positives = 55/96 (57%), Gaps = 12/96 (12%)
Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551
EL+ L+ + L E ++ ++ +LT EN +L +EL+ ++ +L + +E++E+ +T
Sbjct: 32 ELASLKDELARLEAERDEARQEIVKLTEENEEL----RELKKEIEELEKELEDLEQRYET 87
Query: 552 E-----NKPEEVKYLKSLLDEAKEEFKEQTTEIEQL 582
K E V+ L++ + + KE ++EQ ++QL
Sbjct: 88 TLELLGEKSERVEELRADVVDLKEMYREQ---VDQL 120
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.7 bits (86), Expect = 0.063
Identities = 36/230 (15%), Positives = 92/230 (40%), Gaps = 47/230 (20%)
Query: 439 EDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEA 498
LE + + + E E+ ++ KLK + L+++ +L+
Sbjct: 523 ASLEELERELEQKAEEA-------------------EALLKEAEKLK-EELEEKKEKLQE 562
Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV 558
+ L L+E +E + + KE + + ++ + + ++++G K E+
Sbjct: 563 EEDKL----------LEEAEKEAQQAI---KEAKKEADEIIKELRQLQKGGYASVKAHEL 609
Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
+ L++A E+ +++ + ++ + E+ K+ +E + L+ L Q+ ++++
Sbjct: 610 IEARKRLNKANEKKEKKKKKQKEKQEEL-KVGDEVKYLS---------LGQKGEVLSIP- 658
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESN 668
+E + M+ K L E++ K+ + K R S
Sbjct: 659 -DDKEAIVQAGIMKMKVPLSDL--EKIQKPKKKKKKKPKTVKPKPRTVSL 705
Score = 32.1 bits (74), Expect = 1.6
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
++++EAK+ E ++ +L + L E R L ++ E E L++ + L E
Sbjct: 502 NIIEEAKKLIGEDKEKLNEL---IASLEELERELEQKAEEAEALLKEAEKLK-------E 551
Query: 623 ELQEKLDYMENKFQEESLVYERLMSEKENLISQLK 657
EL+EK E+L E++ L+ + +
Sbjct: 552 ELEEK--------------KEKLQEEEDKLLEEAE 572
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 36.8 bits (86), Expect = 0.064
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 818 AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
AE+E R + +++ L E I L+A M K + + + S L GL N
Sbjct: 259 AEVEFRRDWAYPARIERLG--ERIALLEAAMLKDPEIRIKYASKLAGLANYW 308
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 36.8 bits (85), Expect = 0.073
Identities = 77/407 (18%), Positives = 142/407 (34%), Gaps = 75/407 (18%)
Query: 475 ESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKL----------KELTRENRDL 524
+ Q++ ++ +EL+EL L +++ S L +++ R DL
Sbjct: 300 QQLAAEQYRH--VDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYQADL 357
Query: 525 VTKNKELEGK---VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQ 581
LE + V + + R EE E A+ E EV LKS L + ++ Q T Q
Sbjct: 358 EELTIRLEEQNEVVEEANERQEENE--ARAEAAELEVDELKSQLADYQQALDVQQTRAIQ 415
Query: 582 LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLV 641
+ + L + L +L + D AEE E E + E+ L
Sbjct: 416 YQQAIAALERAKELC---------------HLPDLTADSAEEWLETFQAKEEEATEKLLS 460
Query: 642 YERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ-KEIKNLGSLLVDKDKTIGDLKA 700
E+ MS + SQ + + A + + A E +E+ G + + L+
Sbjct: 461 LEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEQVQPLRM 520
Query: 701 KIHKYEKYYAVMKE---------DRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTI 751
++ + E+ + R+ K D EL+ +EL + L
Sbjct: 521 RLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSD--------- 571
Query: 752 KNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLED 811
S Q L+ +++L++ L + L A A +QL +
Sbjct: 572 ------SVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLA----AQNAL-----EQLSE 616
Query: 812 QVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858
Q E +V +Q L ++ E +E+ + ++
Sbjct: 617 QSG---EEFTDSQDVTEYMQQLLEREREAT------VERDELGARKN 654
Score = 34.1 bits (78), Expect = 0.50
Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 23/218 (10%)
Query: 464 AEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMS-----GKLKELT 518
+++E E + + K+ + S+ E Y+ + +++ +EL
Sbjct: 445 ETFQAKEEEATEKLLSLEQKMSMAQAAH--SQFEQAYQLVVAIAGELARSEAWDVARELL 502
Query: 519 RENRD----------LVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEA 568
RE D L + ELE ++ Q + + + K + + L++L E
Sbjct: 503 REGPDQRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQEL 562
Query: 569 KEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE----LEQRDYLIAVKTDGAEEL 624
+ + + + R + L +E+ L R L L ++ L + EE
Sbjct: 563 EALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEF 622
Query: 625 QEKLDYMENKFQEESLVYERLMSEKENLISQLKADLES 662
+ D E + ++ L ER + + + + K L+
Sbjct: 623 TDSQDVTE--YMQQLLEREREATVERDELGARKNALDE 658
Score = 31.8 bits (72), Expect = 2.0
Identities = 14/80 (17%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLL-QKGEMINNLKAQMEKSQQ 853
L+ A Q ++Q Q +L +++R + ++L + ++ L+ ++E+++
Sbjct: 939 LKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEA 998
Query: 854 QQQQQRSPLKGLENQMAKIN 873
++ + R L+ + Q+++ N
Sbjct: 999 ERTRAREQLRQHQAQLSQYN 1018
Score = 30.2 bits (68), Expect = 7.1
Identities = 33/189 (17%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 424 TDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHK 483
W+ + LRE ++ ++ + ++ ++ + + S + L +
Sbjct: 493 EAWDVARELLREGPDQRHLAEQV---QPLRMRLSELEQRLRQQQSAERLLADFC------ 543
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
K Q + ELEA H+++ ++ L+ + + L + QL R++
Sbjct: 544 -KRQGKNLDAEELEA-------LHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQ 595
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK---LSEERRLLTVRS 600
+ + A + L+ L +++ EEF + E ++ +E+ + ER L R
Sbjct: 596 SLMQRAPVWLAAQNA--LEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERDELGARK 653
Query: 601 AELEYELEQ 609
L+ E+E+
Sbjct: 654 NALDEEIER 662
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 36.5 bits (85), Expect = 0.077
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKN-LGSLLVDKDKTIGDLKAKI-- 702
+SE+E I ++ + E+N E + E+ E +N SL +KT+ + K+
Sbjct: 498 LSEEE--IERMVKEAEANAEEDKKRK--EEI---EARNNADSLAYQAEKTLKEAGDKLPA 550
Query: 703 HKYEKYYAVMKEDRKT-KEKDIAELKTKCEELTQQVTKL 740
+ EK + E ++ K +D+ E+K K EEL Q + KL
Sbjct: 551 EEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKL 589
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 36.3 bits (84), Expect = 0.096
Identities = 41/250 (16%), Positives = 76/250 (30%), Gaps = 50/250 (20%)
Query: 385 LEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQ--TDWENNV---KKLREQHEE 439
L+ARLA + +E E+ + R + Q+ D + LR H
Sbjct: 747 LDARLAA------------VDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRR 794
Query: 440 DLERQRKF------YKTQIETLMTL-----VKNQQAEDDSEDETL--NESAIEAQHKLKI 486
E +R+ ++ E D+ D L + A+E L +
Sbjct: 795 AAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALE-AVGLAL 853
Query: 487 QNLKQELSELEAKYKSL---SEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
+ L LE + L + + + + R+ E + + S R+
Sbjct: 854 KRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLR 913
Query: 544 EMER--GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSA 601
+E GA +DE + E + E+ +L+E
Sbjct: 914 TLEESVGAM--------------VDEIRARLAETRAALASGGRELPRLAEALATAEEARG 959
Query: 602 ELEYELEQRD 611
E + + D
Sbjct: 960 RAEEKRAEAD 969
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 35.8 bits (83), Expect = 0.10
Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 421 EQQTDWENNVK-KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
E + + E ++ L+E+ EE L + + ++E +++A + + E E
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLE-------SKEAALEKQLRLEFEREKE 233
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK-ELTRE-NRDLVTK-NKELEGKVA 536
K + L+Q ELE + ++ ++ ++ EL RE N+++ K +E G++A
Sbjct: 234 ELRKKYEEKLRQ---ELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGRLA 290
Query: 537 QLSR---RVEEMER 547
+L+ R++ +E+
Sbjct: 291 KLAELNSRLKGLEK 304
Score = 35.0 bits (81), Expect = 0.19
Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 19/221 (8%)
Query: 661 ESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKE 720
++ A + Q L + ++ L L+ + + ++ + + +KED +
Sbjct: 101 ATSVAAEATTPKSIQELVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDD 160
Query: 721 KD--IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKA 778
+ IA K + ++L++++ +L+A+ + E ER+ K +E+LL E+ L A
Sbjct: 161 LESLIASAKEELDQLSKKLAELKAEEE---------EELERALKEKREELLSKLEEELLA 211
Query: 779 VQDELAEMKCAQLKPSLEAS-AATPSQYRKQLEDQVNSLKAELEQRH-NVVRDLQLKLLQ 836
+ QL+ E +Y ++L ++ EQ+ N + +
Sbjct: 212 RLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELA--LQAIEL 269
Query: 837 KGEMINNLKAQMEKSQQ----QQQQQRSPLKGLENQMAKIN 873
+ E +K ++E+ + + + S LKGLE + +
Sbjct: 270 QREFNKEIKEKVEEERNGRLAKLAELNSRLKGLEKALDSRS 310
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 33.7 bits (78), Expect = 0.10
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 643 ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKI 702
R M E + + + + E E+ L+K+ + L L+ DK + + +AK
Sbjct: 6 RREMEEVQLALDAKREEFE---RREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR 62
Query: 703 HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYL 748
+ EK K+ RK KE++I ELK + EEL ++ KLE + Y
Sbjct: 63 RRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQ 108
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 36.0 bits (83), Expect = 0.11
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 427 ENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKI 486
E LR + E D E +K K + + L K + + E+ IE + K +
Sbjct: 41 EQEAVNLRGKAERDAEHIKKTAKRESKAL----KKELLLEAKEEARKYREEIEQEFKSER 96
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK---ELEGKVAQLSR-RV 542
Q LKQ S L + SL + E++S K K L + + L K+K E E +V +L +
Sbjct: 97 QELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKK 156
Query: 543 EEMERGAQ-----------TENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
E+ER A E + + + + + EA+ E K+++ ++
Sbjct: 157 AELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKM 204
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 35.8 bits (83), Expect = 0.12
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
+++EAK EF E+ +E+L EKL E R+ L E+E L++ + L + G
Sbjct: 490 PIIEEAKTEFGEEKELLEELI---EKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKT 546
Query: 623 ELQEKLDYMENKFQEESLVY-ERLMSEKENLISQLKA 658
L E + V E E + + LK
Sbjct: 547 SLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKFLKK 583
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 34.4 bits (79), Expect = 0.15
Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 652 LISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV 711
L S+L L S + + + + + L+KEI + D I +L+ KI + ++ A+
Sbjct: 91 LQSRLNKLL-SLKDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAAL 149
Query: 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQS 746
+KE ++ ++K+IA LK++ ++ Q++ E + Q+
Sbjct: 150 LKEKKEAEDKEIARLKSEASKIKQELVDAELEFQT 184
>gnl|CDD|218703 pfam05700, BCAS2, Breast carcinoma amplified sequence 2 (BCAS2).
This family consists of several eukaryotic sequences of
unknown function. The mammalian members of this family
are annotated as breast carcinoma amplified sequence 2
(BCAS2) proteins. BCAS2 is a putative spliceosome
associated protein.
Length = 221
Score = 34.4 bits (79), Expect = 0.17
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
+ LK+E+ E+ + K E+ KL+ L + DLV+KN E+E A+L + +E++
Sbjct: 152 LAELKEEIEEVNRQRKY---SQEEAGEKLRSLEQRWVDLVSKNLEIEVACAELEQEIEQL 208
Query: 546 ERGAQTE 552
+R
Sbjct: 209 KRKKAEL 215
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 33.3 bits (77), Expect = 0.18
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 485 KIQNLKQE-------LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQ 537
K+ LK E ELE K K L +E+ + ++ L ++N+ L + ++LE ++ +
Sbjct: 1 KMNALKLEAENAQERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKE 60
Query: 538 LSRRVEEME-RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
++EE E E ++ L+ L+E+++ KE T ++ + + E+ + + L
Sbjct: 61 AKEKLEESEKLATNAEALTRRIQLLEEELEESEKRLKETTEKLREADKKAEESERKVKAL 120
Query: 597 TVRSAELEYELEQ 609
E E + E+
Sbjct: 121 ENERDEWEEKYEE 133
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 35.4 bits (81), Expect = 0.19
Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 7/207 (3%)
Query: 404 IREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQ 463
++E ++ + + + + W+ + RE + L + + N +
Sbjct: 319 VKENMGTLETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGALNAR 378
Query: 464 AEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK------EL 517
+ +D T E A + Q E EA+ S EE D+ L
Sbjct: 379 LKLAQDDLTQAELNYAAADQAANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTA 438
Query: 518 TRENRDLVTKNKELEGKVAQLSRRVEEM-ERGAQTENKPEEVKYLKSLLDEAKEEFKEQT 576
+E + ++ E++ +R AQ+ K + + + A +
Sbjct: 439 RQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQ 498
Query: 577 TEIEQLRSEVEKLSEERRLLTVRSAEL 603
+I L EK S+++ LL +
Sbjct: 499 QQIADLSGAKEKASDQKSLLWKAEEQY 525
>gnl|CDD|131451 TIGR02398, gluc_glyc_Psyn, glucosylglycerol-phosphate synthase.
Glucosylglycerol-phosphate synthase catalyzes the key
step in the biosynthesis of the osmolyte
glucosylglycerol. It is known in several cyanobacteria
and in Pseudomonas anguilliseptica. The enzyme is
closely related to the alpha,alpha-trehalose-phosphate
synthase, likewise involved in osmolyte biosynthesis, of
E. coli and many other bacteria. A close homolog from
Xanthomonas campestris is excluded from this model and
scores between trusted and noise.
Length = 487
Score = 34.9 bits (80), Expect = 0.19
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 577 TEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQ 636
T+ E++RS + S + +RS EL +++ E++DY K
Sbjct: 257 TDPERIRSALAAASIREMMERIRS-----ELAGVKLILSA---------ERVDYT--KGI 300
Query: 637 EESLV-YERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
E L YERL+ + L+ ++ A S + +DE LQ +I+
Sbjct: 301 LEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDE--LQGQIEQA 347
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 35.1 bits (81), Expect = 0.20
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 485 KIQNLKQELSELEAKYKSLS-EEHEDMSGKLKELTREN-RDLVTKNKELEGKVAQLSRRV 542
KIQ + ++E++A SLS + + +LK R + K K+LE K+ +
Sbjct: 19 KIQPIIDRINEIQASLASLSDDALREKGMELKSRVRGALEPIEQKKKDLEKKLDNPDISL 78
Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI-EQLRSEVEKLSEE--RRL 595
EE E + LD +E++E T E++ E L +E RRL
Sbjct: 79 EEAES-------------INEELDTLAKEYEEATAAALEEILPETFALVKETCRRL 121
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 34.9 bits (80), Expect = 0.21
Identities = 73/342 (21%), Positives = 134/342 (39%), Gaps = 45/342 (13%)
Query: 445 RKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLS 504
K I + ++++ +AE DS + + N E + + +L +E S + + S
Sbjct: 445 LVMEKHIISEISEILEDIEAELDSLERSSNGDD-ENEEVAMVGSLVEESSAVIER----S 499
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL 564
+E E ++ E T VT ++L A L + ++E + V KSL
Sbjct: 500 QELEGAVSRISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLE-----WVVNQEKSL 554
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEEL 624
D + E + + + SE E S + V + LE ELE
Sbjct: 555 QDVSVEASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLE-ELETLK-----------SE 602
Query: 625 QEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
+E LD +K +++ + + E E + +LK++L++++ ++ + + + + ++L
Sbjct: 603 KENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESL 662
Query: 685 GSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK-DIAELKTKCEELTQQVTKLEAD 743
D + L+ KI E D KE+ + EL KC EL E
Sbjct: 663 ELRAKDLEAEHKSLQEKISSLE--------DELEKERQNHQELIAKCREL-------EEK 707
Query: 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAE 785
+ + DE K QEK + A ++LAE
Sbjct: 708 IERAEQEENMQKLDEEEQKIKQEK-------EIAAAAEKLAE 742
Score = 30.3 bits (68), Expect = 5.5
Identities = 53/356 (14%), Positives = 123/356 (34%), Gaps = 37/356 (10%)
Query: 453 ETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSG 512
++ + L + ED+ E + + Q LK+ K +SE+ + + E + +
Sbjct: 412 DSSVALTGPVEHEDNLESKLSDRLPEVLQSVLKLVMEKHIISEISEILEDIEAELDSLER 471
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
+ + V L + + + R +E+E E L+ + ++
Sbjct: 472 SSNG--DDENEEVAMVGSLVEESSAVIERSQELE--GAVSRISEFTSVLEHEVTVCQDLL 527
Query: 573 KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME 632
+ L +++ S LE+ + Q L V + +E + L
Sbjct: 528 DGKAD----LEKFIQEFS----------LTLEWVVNQEKSLQDVSVEASEIKKNFLGLKS 573
Query: 633 NKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692
++ + S + L E + S + ++ + L + +
Sbjct: 574 SEKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDD-----LEESKNKLQETE 628
Query: 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIK 752
K + +LK+++ +E E + + E L + LEA+ +S I
Sbjct: 629 KKLEELKSELDA-------SQESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKIS 681
Query: 753 NMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQL-------KPSLEASAAT 801
++E++ + N ++L+ + + ++ E +L K E +AA
Sbjct: 682 SLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEIAAAA 737
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 33.9 bits (78), Expect = 0.24
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 488 NLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER 547
N+ + L + E K L + DM +L + + ++ + K+LE K+ + + +++E
Sbjct: 13 NIHEGLDKAEDPEKMLEQAIRDMQSELGKARQALAQVIARQKQLERKLEEQKEQAKKLEN 72
Query: 548 GAQT------ENKPEEV----KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
A+ E E L+ + + + +Q + +EQLR ++ L
Sbjct: 73 KARAALTKGNEELAREALAEIATLEKQAEALETQLTQQRSAVEQLRKQLAAL 124
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 34.7 bits (80), Expect = 0.25
Identities = 49/246 (19%), Positives = 107/246 (43%), Gaps = 19/246 (7%)
Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDS 468
R + E + E QT+ ++ L+ + + E I++ + +K Q E+
Sbjct: 210 RSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSE 269
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN 528
L E ++ +++++ L + E + L L N
Sbjct: 270 LLTQLELDEAEE----ELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENN 325
Query: 529 KELEGKVAQLSR--RVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEV 586
+ L+ ++ ++ R+ E E G+ + + +E+K L+S+LDE E + Q +L+ +
Sbjct: 326 EHLKEEIERVKESYRLAETELGSVRKFE-KELKELESVLDEILENIEAQEVAYSELQDNL 384
Query: 587 EKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLM 646
E++ E+ L + + + +++L +++ D E +E L+ +++K E +R M
Sbjct: 385 EEI--EKALTDIEDEQEKV----QEHLTSLRKDELEA-RENLERLKSKLHEI----KRYM 433
Query: 647 SEKENL 652
EK NL
Sbjct: 434 -EKSNL 438
Score = 31.6 bits (72), Expect = 2.4
Identities = 67/335 (20%), Positives = 132/335 (39%), Gaps = 39/335 (11%)
Query: 460 KNQQAEDDSEDE-TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
K + DD E + TL E IE +I EL E E K + ++ +L+
Sbjct: 101 KAKHEIDDIEQQLTLIEEDIE-----QILEDLNELVESEEKNSEEIDHVLELYEELRRDV 155
Query: 519 RENRDLVTK-----NKELEGKVAQLSRRVEEMERGAQTE------NKPEEVKYLKSLLDE 567
NR + K+LE +LS+ VE G E E + L+S+++
Sbjct: 156 LANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMER 215
Query: 568 AKEEFKEQTT----EIEQLRSEVEKLSEERRLLTVRSAELEYEL------EQRDYLIAVK 617
E T +++ L++ + EE L + + E E + L ++
Sbjct: 216 IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLE 275
Query: 618 TDGAEE----LQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD 673
D AEE +QEK++ + + + E E + L LE + + +
Sbjct: 276 LDEAEEELGLIQEKIESLYDLLEREVEAKN----VVEENLPILPDYLEKAKENNEHLKEE 331
Query: 674 EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEEL 733
+ +++ + + L K + ++ + E + E+ + +E +EL+ EE+
Sbjct: 332 IERVKESYRLAETELGSVRKF----EKELKELESVLDEILENIEAQEVAYSELQDNLEEI 387
Query: 734 TQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
+ +T +E + + + ++ DE + N E+L
Sbjct: 388 EKALTDIEDEQEKVQEHLTSLRKDELEARENLERL 422
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 33.5 bits (77), Expect = 0.26
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
Q L+ +L L+ + + L E +L+ +E L + K L+ L RR E +E
Sbjct: 25 QKLRAQLRRLQQENQWLRGELALTQQELQASEQEVIQLPEEVKHLQFLC--LQRREELIE 82
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTT---EIEQLRSEVEKLSE-----ERRLLTV 598
+E+ EE+K L E K +E+ E+ Q++SE ++L RL T+
Sbjct: 83 SRTASEHLEEELKSEIDPLKELKPNLEEELAAEIELPQIQSEKDQLQASLYEIPARLRTL 142
Query: 599 RSAELEYELEQRDYLIAV 616
+ ++YE Q Y +AV
Sbjct: 143 HNLVIQYE-SQGRYEVAV 159
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 34.5 bits (80), Expect = 0.26
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 25/112 (22%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
+ LK+EL ELE + K L EE E + LK+L
Sbjct: 327 VDFPELKEELKELEEELKELEEELEKIKKLLKKL-------------------------P 361
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRL 595
+ RG K E+++ L ++ EE +E E+++L+ E+E L E ++
Sbjct: 362 KKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEELESLYSEGKI 413
Score = 29.9 bits (68), Expect = 7.7
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 527 KNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE-----IEQ 581
EL+ ++ +L ++E+E EE++ +K LL + ++ + Q +E+
Sbjct: 328 DFPELKEELKELEEELKELE---------EELEKIKKLLKKLPKKARGQLPPEKREQLEK 378
Query: 582 LRSEVEKLSEERRLLTVRSAELEYELEQR 610
L EKLSEE L EL+ ELE
Sbjct: 379 LLETKEKLSEELEELEEELKELKEELESL 407
>gnl|CDD|192395 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
transporter, ATPase subunit. Members of this family are
found in various prokaryotic ABC transporters,
predominantly involved in nitrate, sulfonate and
bicarbonate translocation.
Length = 120
Score = 32.5 bits (75), Expect = 0.28
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614
P ++ ++ +DE KE F EQ L + + ++ +ER ELE DYL
Sbjct: 38 PLGRRFAEADIDERKELFAEQLLAHVPLAAHIRRVLDERPSHRAPEERFLDELE--DYL- 94
Query: 615 AVKTDGAEELQEKL 628
+ AE
Sbjct: 95 --SPEEAERTLRTA 106
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 34.7 bits (81), Expect = 0.29
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQK-EIKNLG-SLLVDKDKTIGDLKAKI- 702
+S++E I ++ D E+N E D++ + E +N SL+ +KT+ +L K+
Sbjct: 500 LSDEE--IERMVKDAEANAEE------DKKRKELVEARNQADSLIYQTEKTLKELGDKVP 551
Query: 703 -HKYEKYYAVMKEDRKT-KEKDIAELKTKCEELTQQVTKL 740
+ EK A +KE ++ K +D +K K EELTQ KL
Sbjct: 552 ADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKL 591
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 34.4 bits (79), Expect = 0.31
Identities = 57/303 (18%), Positives = 125/303 (41%), Gaps = 51/303 (16%)
Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHE-----EDLERQRKFYKTQIETLMTLVKNQQ 463
+ Q+D + + Q + E ++ L ++HE +Q Y+ QIE +
Sbjct: 592 LQPQDDIQPWLDAQ-EEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTAL 650
Query: 464 A-------EDDSEDETLNESAIEA----QHKLKIQNLKQELSELEAKYKSLSEEHEDMSG 512
A ++D E L EA Q + ++ L+ + +L ++L + +
Sbjct: 651 AGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLPHS 710
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRR-VEEMERGAQTENK----------PEEVKYL 561
+ R + + L ++ L ++ V E +R + + + ++ +L
Sbjct: 711 EETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFL 770
Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE-LEYELEQRDYLIAVKTDG 620
+LLDE E T++EQL+ +E ++ + L ++A+ L + R + +
Sbjct: 771 AALLDE------ETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVT- 823
Query: 621 AEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
E++Q++L + + +E + + + + QLK D A++ Q +QAL ++
Sbjct: 824 VEQIQQELAQLAQQLRENT-------TRQGEIRQQLKQD-----ADNRQQ---QQALMQQ 868
Query: 681 IKN 683
I
Sbjct: 869 IAQ 871
>gnl|CDD|118696 pfam10168, Nup88, Nuclear pore component. Nup88 can be divided
into two structural domains; the N-terminal two-thirds
of the protein has no obvious structural motifs but is
the region for binding to Nup98, one of the components
of the nuclear pore. the C-terminal end is a predicted
coiled-coil domain. Nup88 is overexpressed in tumour
cells.
Length = 717
Score = 34.1 bits (78), Expect = 0.37
Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 22/172 (12%)
Query: 433 LREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLK------- 485
REQ+ + R+ ++ +++ L+ L K +Q ED + +S E KL
Sbjct: 548 FREQYLLKHDLAREEFQRRVK-LLQLQKEKQLEDIQDCREERKSLSERAEKLAEKFEEAK 606
Query: 486 ------IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
+ K+ L ++ LS+ DMS KEL R N+ L ++ + +
Sbjct: 607 YNQELLVNRCKRLLQSANSQLPVLSDSERDMS---KELQRINKQLQHLANGIKQVKKKKN 663
Query: 540 RRVEEMERGAQTENKPEEV-----KYLKSLLDEAKEEFKEQTTEIEQLRSEV 586
+ M + + K + +L E E +I+++ + V
Sbjct: 664 YQRYHMASQESPKKSSYTLPEKQHKTITEILKELGEHIDRMIKQIKRINNHV 715
Score = 34.1 bits (78), Expect = 0.43
Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 491 QELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV-AQLSRRVE-EMERG 548
+++ + + KSLSE E ++ K +E LV + K L +QL + E +
Sbjct: 579 EDIQDCREERKSLSERAEKLAEKFEEAKYNQELLVNRCKRLLQSANSQLPVLSDSERDMS 638
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEI---EQLRSEVEKLSEERR 594
+ + +++++L + + + K++ Q + E + L E++
Sbjct: 639 KELQRINKQLQHLANGIKQVKKKKNYQRYHMASQESPKKSSYTLPEKQH 687
Score = 31.8 bits (72), Expect = 2.0
Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 48/194 (24%)
Query: 559 KYLKSLLDEAKEEFKEQTTEI----EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614
+YL D A+EEF+ + + E+ +++ EER+ L+
Sbjct: 551 QYLLKH-DLAREEFQRRVKLLQLQKEKQLEDIQDCREERKSLS----------------- 592
Query: 615 AVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
+ AE+L EK +E +E L+++ K L+S ++ + E
Sbjct: 593 ----ERAEKLAEK--------------FEEAKYNQELLVNRCKRLLQSANSQLPVLSDSE 634
Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKT-------KEKDIAE-L 726
+ + KE++ + L I +K K + + A + +K+ + K I E L
Sbjct: 635 RDMSKELQRINKQLQHLANGIKQVKKKKNYQRYHMASQESPKKSSYTLPEKQHKTITEIL 694
Query: 727 KTKCEELTQQVTKL 740
K E + + + ++
Sbjct: 695 KELGEHIDRMIKQI 708
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 33.8 bits (78), Expect = 0.40
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAK--EE 571
LKE EN + + +++EL L++ + + KP+ K L++L +E +
Sbjct: 148 LKEGLEENLEGMKRDEEL------LNKDLNLIN-----SIKPKLRKKLQALKEEIASLRQ 196
Query: 572 FKEQTT-----EIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQE 626
++ E+E+ R E+ LS + + EL+ EL++ I T+ EL E
Sbjct: 197 LADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLE 256
Query: 627 KLDYMENKFQEESLVYERLMSEKENLISQLKA 658
++ E K +EE R S KE IS+LKA
Sbjct: 257 EIAEAE-KIREEC----RGWSAKE--ISKLKA 281
Score = 31.5 bits (72), Expect = 2.0
Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 31/178 (17%)
Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
+ L+ L + +E + + E L ++ ++ + L + L+ E+ L +
Sbjct: 143 QLLEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKEEIAS---LRQLAD 199
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
+ +L K ++E +SEK + +L+ +L+ + + L
Sbjct: 200 ELNLCDPLEL----EKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELL 255
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQ 736
+EI + +E R K+I++LK K L +
Sbjct: 256 EEIAEAEKIR------------------------EECRGWSAKEISKLKAKVSLLQKL 289
Score = 30.4 bits (69), Expect = 4.2
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 27/145 (18%)
Query: 643 ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKI 702
E L+++ NLI+ +K L + + L E+ L ++K
Sbjct: 163 EELLNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELEK----------- 211
Query: 703 HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQ-------VTKLEADCQSYLNTIKNME 755
+++ ++ I+E + + EEL Q+ + L L I E
Sbjct: 212 ---------ARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAE 262
Query: 756 NDERSTKHNQEKLLKIYEDRLKAVQ 780
+ K + + ++ +Q
Sbjct: 263 KIREECRGWSAKEISKLKAKVSLLQ 287
Score = 29.6 bits (67), Expect = 8.6
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
L+++ +QEL L K ++ E++ +L+ELT L K EL ++A+ +
Sbjct: 206 PLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIR 265
Query: 543 EE 544
EE
Sbjct: 266 EE 267
>gnl|CDD|220222 pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium
adhesin A) is an adhesin which forms two alpha helices.
Length = 126
Score = 32.2 bits (73), Expect = 0.41
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
Q + EL LEA+Y++L ++ E + K+ V + KE + +++
Sbjct: 23 QEVMSELKNLEAEYQALMQKEEARFEEEKQEKETAEKEVQELKERQ---LGREELYAKLK 79
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
++T +E K L DE + +++ T+ EQ SE EK+ E R
Sbjct: 80 EESKTRFHKDEYKKLLKRYDEYLNKLEQKITDKEQQISEFEKIQEVR 126
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 33.1 bits (76), Expect = 0.43
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 396 DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQ 451
D+++ + ++++ +E Q++FR+ E +KKL+E+ E ++ QR+ K Q
Sbjct: 70 DQEKMK-ELQKMMKEFQKEFREAQESGD---MKKLKKLQEKQMEMMDDQRELMKMQ 121
>gnl|CDD|182657 PRK10698, PRK10698, phage shock protein PspA; Provisional.
Length = 222
Score = 33.2 bits (76), Expect = 0.47
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
E QQ +W+ + + +EDL R K ++ L+ +++ E DETL
Sbjct: 65 EAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEH---EVTLVDETL------ 115
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK--ELEGKVAQ 537
A+ K +I L+ +LSE A+ ++L H+ S +R+ R + K E +
Sbjct: 116 ARMKKEIGELENKLSETRARQQALMLRHQAASS-----SRDVRRQLDSGKLDEAMARFES 170
Query: 538 LSRRVEEMERGAQT 551
RR+++ME A++
Sbjct: 171 FERRIDQMEAEAES 184
>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs. Extended SDRs are distinct from
classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 200
Score = 32.7 bits (75), Expect = 0.53
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 101 TCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYV 160
+ R +N+YGP +V++ + R L G+ +F G +D +V
Sbjct: 126 PVVILRLANVYGPGQRPR--LDGVVNDFIRRALEGKPLTVFGGGN-------QTRDFIHV 176
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 33.5 bits (77), Expect = 0.57
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETL---MTLV 459
+R V+E + + + L+ +RK ++IE L +
Sbjct: 6 LLRNNPDLVKESLKA---------RGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNEL 56
Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
Q + + + E + +++ LK+EL+EL A K+L E +D + +
Sbjct: 57 SKQIGKAKGQKKDKIEEIKK-----ELKELKEELTELSAALKALEAELQDKLLSIPNIPH 111
Query: 520 E 520
E
Sbjct: 112 E 112
Score = 33.1 bits (76), Expect = 0.75
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 489 LKQELSELEAKYKSLSEEHEDMS---GKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
K + + +SL + KL L E + L+++ +EL+ K +LS+++ +
Sbjct: 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63
Query: 546 --ERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
++ + E +E+K LK L E K E++ + + E
Sbjct: 64 KGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHE 112
>gnl|CDD|149682 pfam08702, Fib_alpha, Fibrinogen alpha/beta chain family.
Fibrinogen is a protein involved in platelet aggregation
and is essential for the coagulation of blood. This
domain forms part of the central coiled coiled region of
the protein which is formed from two sets of three
non-identical chains (alpha, beta and gamma).
Length = 146
Score = 31.9 bits (73), Expect = 0.58
Identities = 17/105 (16%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE-RRLLTVRSAELEYELEQRDYLIAVKTD 619
++ LLD+ +++ ++ ++E L ++ + + + L + +Q +
Sbjct: 23 IQDLLDKYEKDVDKRIEDLENLLDQLANSTSSAHQYVKHIKDSLRGDQKQAQPNDNIYNA 82
Query: 620 GAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
++ L++ ++Y + E ++ +E+ I L+ L SNR
Sbjct: 83 YSKSLRKMIEY----------ILETKINTQESQIRVLQEVLRSNR 117
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 32.8 bits (75), Expect = 0.58
Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 622 EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
+EL+E+++ ME + ++ + E E +L+ L+ E+ L++E
Sbjct: 8 QELEERMEQMEEDMRRA----QKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEEN 63
Query: 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
+ L ++ L+A++ + A ++E+R+ KE + +L+ + E
Sbjct: 64 RRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELRE 114
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 33.1 bits (77), Expect = 0.60
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 485 KIQNLKQELSELEAKYKSLS--EEHEDMSGKLKELTRENRDL---VTKNKELEGKVAQLS 539
K++ L++ ELEA LS E D + ++L++E +L V +E + L
Sbjct: 7 KLEALEERYEELEAL---LSDPEVISDQK-RFRKLSKEYAELEPIVEAYREYKQAQEDLE 62
Query: 540 RRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
+EM + E+ PE + + AKEE KE +E+L E++ L
Sbjct: 63 E-AKEM---LEEESDPE-------MREMAKEELKELEERLEELEEELKIL 101
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 33.5 bits (77), Expect = 0.63
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE----- 557
LS + + KLKEL RE ++ + K + + + +EE+ + + E K EE
Sbjct: 82 LSPGEQGLQRKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQ 141
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
++ L+ L + KE+ +++L ++K SEER
Sbjct: 142 MEILEKALKSYLKIVKEENKSLQRLAKALQKESEER 177
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 33.4 bits (77), Expect = 0.65
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 578 EIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE 637
+E LR + L E L R A L + ++R EL+ +L +E +
Sbjct: 420 ALEDLRRRIAALELELDALE-REAALGADHDER----------LAELRAELAALEAELAA 468
Query: 638 ESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
+ R EKE L+ + A A+++ A D+ AL+ ++ L
Sbjct: 469 ---LEARWQQEKE-LVEAILALRAELEADADAPADDDAALRAQLAEL 511
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 33.1 bits (76), Expect = 0.65
Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 642 YERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAK 701
Y+ LM ++ L++ +K L + + + L+ E+++ +D+ K K
Sbjct: 160 YKLLM-KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDR------AKEK 212
Query: 702 IHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERST 761
+ + ++ K K + EL+ + +EL ++ L I E
Sbjct: 213 L-------KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265
Query: 762 KHNQEKLLKIYEDRLKAVQ 780
+ K ++ +++LK +Q
Sbjct: 266 RGFTFKEIEKLKEQLKLLQ 284
Score = 33.1 bits (76), Expect = 0.69
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENR-------DLVTKNKELEGKVAQLSRRVEEMERG 548
LE + L E E + K L +E L + LE ++ QL + +E+E
Sbjct: 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE-- 199
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLT 597
+ LD AKE+ K+ EI ++E+L EE + L
Sbjct: 200 ----------DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE 238
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 33.1 bits (76), Expect = 0.66
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 774 DRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLK 833
D+LK++Q ++A E S Q R L Q+ + + Q +R+ Q
Sbjct: 47 DQLKSIQQDIAAK---------EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNT 97
Query: 834 LLQKGEMINNLKAQMEKSQQQQQQQRSPL 862
L Q + I+ L A + K +QQQ Q L
Sbjct: 98 LNQLNKQIDELNASIAKLEQQQAAQERLL 126
>gnl|CDD|220373 pfam09738, DUF2051, Double stranded RNA binding protein (DUF2051).
This is a novel protein identified as interacting with
the leucine-rich repeat domain of human flightless-I,
FliI protein.
Length = 294
Score = 33.0 bits (75), Expect = 0.67
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 529 KELEGKVAQLSRRVEE-MERGAQTENKPE----EVKYLKSLLDEAKEEFKEQTTEIEQLR 583
+EL+ + ++ +V++ M AQ +N+ EV LK L+E +E E E E+
Sbjct: 79 RELKDSLIEVEEKVKKAMVSNAQLDNEKTNLMYEVDLLKDKLEELEESLAELQREFEEKT 138
Query: 584 SEVEKLSEERRLLTVRSAELEYELEQRDYLIA 615
++E L +L + EL+ +L QRD LI
Sbjct: 139 RDLEALKRAIDILQHQLKELKEQLRQRDQLIE 170
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 32.8 bits (75), Expect = 0.68
Identities = 32/181 (17%), Positives = 72/181 (39%), Gaps = 17/181 (9%)
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
S L E ++E K EIE L +++E++ + L + + E+++ IA +
Sbjct: 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97
Query: 623 ELQEKLD--------------YMENKFQEESL--VYERLMSEKENLISQLKADLESNRAE 666
E QE L Y++ +S + R+ + ++ K LE + +
Sbjct: 98 ERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISV-IVDADKKILEQQKED 156
Query: 667 SNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAEL 726
+ AL+ +++ L +L + + + L ++ + A + + + A L
Sbjct: 157 KKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAAL 216
Query: 727 K 727
+
Sbjct: 217 E 217
Score = 29.3 bits (66), Expect = 8.8
Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 40/216 (18%)
Query: 485 KIQNLKQELSEL-------EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQ 537
KIQN +LSEL + + +SL + E++ K+ EL +E + K+L+ ++A+
Sbjct: 32 KIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91
Query: 538 LSRRVEEME-------RGAQTENKPEEVKYLKSLLD-EAKEEFKEQTTEIEQL----RSE 585
L + E + R Q Y+ +L+ ++ + + T I + +
Sbjct: 92 LKENIVERQELLKKRARAMQVNG--TATSYIDVILNSKSFSDLISRVTAISVIVDADKKI 149
Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
+E+ E+++ L + A LE +LE L EL+ +L+ + ++
Sbjct: 150 LEQQKEDKKSLEEKQAALEDKLETLVALQN-------ELETQLNSLNSQ----------- 191
Query: 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
+EK LI+ L A E++ + +++AL +
Sbjct: 192 KAEKNALIAALAAK-EASALGEKAALEEQKALAEAA 226
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 33.1 bits (76), Expect = 0.70
Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 39/238 (16%)
Query: 369 DYFQGSHDDPYE-TIRLLEARLAEFEGF-----DKKEFEYQIREEYREVQEDFRKMFEEQ 422
+ + P E +R EA+L+ G K EFE ++ EE E E+ + EE
Sbjct: 108 EAAMEVGETPREEKLREDEAKLSLKSGLASLPKPKNEFELELPEEEEEEPEEMEEELEED 167
Query: 423 QTDWENNVKKLREQHEEDLER------QRKF---YKTQIETLMTLVKNQQAEDDSEDETL 473
D + + E E++ R QR + L V E D ++ +
Sbjct: 168 AADRDARKRAAEEAKEQEELRRRSQVIQRNLPRPSVLDLIVLRPSVNVPLTELDPAEKLI 227
Query: 474 NESAI-------------EAQHKLKIQNLKQ-ELSELEAKYKSLSEEHEDMSGKLKELTR 519
N+ + K K + + ELE K + E E + G++
Sbjct: 228 NKEMALLIAHDALKYPLPGGKPKGKAVPYEDFDDEELEEARKLIEAELEKLKGEMGHQEE 287
Query: 520 ENRDLVTKNKELEGKVAQLSRR--------VEEMERGAQTENKPEEVKYLKSLLDEAK 569
+ EL +V L E +R + E V+ K + EA+
Sbjct: 288 SLEEFDEAWSELNEQVLFLPGLNAYTDIEDASEEDRIEAYKAALENVR--KKMEKEAE 343
>gnl|CDD|218511 pfam05227, CHASE3, CHASE3 domain. CHASE3 is an extracellular
sensory domain, which is present in various classes of
transmembrane receptors that are parts of signal
transduction pathways in bacteria. Specifically, CHASE3
domains are found in histidine kinases, adenylate
cyclases, methyl-accepting chemotaxis proteins and
predicted diguanylate cyclases/phosphodiesterases.
Environmental factors that are recognised by CHASE3
domains are not known at this time.
Length = 138
Score = 31.5 bits (72), Expect = 0.71
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG---AQTENKPEEVKYLKSLLDEAK 569
+L++LT +N + + LE + Q R+EE+E + + ++S E K
Sbjct: 57 RLRQLTADNPEQQERLDRLEALIDQ---RLEELEETIALRREGGLDAALALVRS--GEGK 111
Query: 570 EEFKEQTTEIEQLRSEVEKL-SEERRLLTVRSAE 602
+++R+ + ++ +EERRLL R+AE
Sbjct: 112 ALM-------DEIRALIAEMIAEERRLLAERNAE 138
>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding
enzyme BshC. Members of this protein family are BshC,
an enzyme required for bacillithiol biosynthesis and
described as a cysteine-adding enzyme. Bacillithiol is a
low-molecular-weight thiol, an analog of glutathione and
mycothiol, and is found largely in the Firmicutes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 528
Score = 33.0 bits (76), Expect = 0.74
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 471 ETLNESAIEAQHKLKIQNLKQEL-SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK 529
E L E +E Q I L +E ++ A +K L EE + L+ L +N +TK
Sbjct: 398 EGLKERFLERQDPEPIDALFEEAKEQITAAHKPLREELAAVDPTLQGLAEKNLAKITKQV 457
Query: 530 E-LEGKVAQLSRRVEEME----RGAQTENKPE 556
E LE ++ + RR ++E QT +P
Sbjct: 458 EFLEKRLLRAIRRKHDVELQQFDRIQTNLRPN 489
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 32.1 bits (74), Expect = 0.76
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 567 EAKEEFKEQTTEIEQ----LRSEVEKLSEERRL------LTVRSAEL---EYELEQRDYL 613
EAKEE + E E+ R+E+++ E+RL L + L E LE+++
Sbjct: 57 EAKEEIHKLRAEAERELKERRNELQRQ--EKRLLQKEETLDRKDESLEKKEESLEEKEKE 114
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSE--KENLISQLKADLESNRAE 666
+A + EE +E+L+ + + Q+E L +E KE L+ +++A+L+ A+
Sbjct: 115 LAARQQQLEEKEEELEELIEEQQQELERISGLTAEEAKEILLEEVEAELKHEAAK 169
Score = 29.0 bits (66), Expect = 8.7
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
K + L ++ LE K +SL E K KEL + L K +ELE + + + +E
Sbjct: 90 KEETLDRKDESLEKKEESLEE-------KEKELAARQQQLEEKEEELEELIEE---QQQE 139
Query: 545 MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI-----EQLRSEVEKLSEE 592
+ER + EE K + LL+E + E K + ++ E+ + E +K ++E
Sbjct: 140 LERISGL--TAEEAK--EILLEEVEAELKHEAAKMIKEIEEEAKEEADKKAKE 188
>gnl|CDD|220879 pfam10805, DUF2730, Protein of unknown function (DUF2730). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 106
Score = 30.9 bits (70), Expect = 0.84
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 530 ELEGKVAQLSRRVEEMERGAQTENKP--EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVE 587
+L +A +R+ EME + E+ P ++V LK + E + E KE + +I+ + ++E
Sbjct: 39 KLIDIIASNDKRLTEME--TKLESLPTAKDVHALKIEITELRGELKELSAQIQSISHQLE 96
Query: 588 KLSEER 593
L E
Sbjct: 97 LLLENE 102
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region. This family
represents an N-terminal conserved region found in
several huntingtin-associated protein 1 (HAP1)
homologues. HAP1 binds to huntingtin in a polyglutamine
repeat-length-dependent manner. However, its possible
role in the pathogenesis of Huntington's disease is
unclear. This family also includes a similar N-terminal
conserved region from hypothetical protein products of
ALS2CR3 genes found in the human juvenile amyotrophic
lateral sclerosis critical region 2q33-2q34.
Length = 307
Score = 32.5 bits (74), Expect = 1.0
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDL 524
+S ES+ + +++ L+++L LE + + L E + + + + L
Sbjct: 142 SSESTPLRPQESSSSSHGCFQLEALQEKLKLLEEENEHLRSEASHLKTETVTYEEKEQQL 201
Query: 525 VTKN-KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLR 583
V K+L Q++ EE+ + E+ + Q EI L
Sbjct: 202 VNDCVKQLREANDQIASLSEELAKKT--------------------EDLERQQEEITHLL 241
Query: 584 SEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE 637
S++ L ++ + + + EL + +L A K D +LQ +L +++K+ E
Sbjct: 242 SQIVDLQKKCKSYALENEEL------QQHLAAAK-DAQRQLQAELQELQDKYAE 288
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit
TAF12 (also component of histone acetyltransferase SAGA)
[Transcription].
Length = 505
Score = 32.7 bits (74), Expect = 1.1
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 835 LQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSP---SGEDTDDPDFLPR 891
+ G L + + QQ Q+Q SP + + M + P ++ LP
Sbjct: 221 VHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYEASGMPPPAEWAGSNGLHVLPG 280
Query: 892 SRCK------STSKKRQLKKPSTHLNSTAGLAENV 920
R + + THL+ G+A N
Sbjct: 281 RREEVPRGIFRCPSPESSRGEPTHLDYRNGMANNA 315
>gnl|CDD|220178 pfam09321, DUF1978, Domain of unknown function (DUF1978). Members
of this family are found in various hypothetical
proteins produced by the bacterium Chlamydia pneumoniae.
Their exact function has not, as yet, been identified.
Length = 241
Score = 32.1 bits (73), Expect = 1.1
Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 26/176 (14%)
Query: 413 EDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDET 472
E E+Q + + N K L++ E + + FY +IE + ++ QA E
Sbjct: 78 EKALDRLEKQSS--KENKKVLQDAQREFERQSQDFYDKEIEEVEERLEALQALYPEVSER 135
Query: 473 LNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
+E+ + ++L+ L +E +Y E ED KE +
Sbjct: 136 EDETEKQETVSSYARDLETALDHIEVEYVQCVREQEDYW-----------------KEED 178
Query: 533 GKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
K +L E +R EE++ L++ + K++ E+ + E
Sbjct: 179 VKEQELREEGGERKR-------LEEIQEGLESLEDLLKATKKRLDFAEEHLEKAEL 227
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 31.1 bits (71), Expect = 1.1
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 489 LKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG 548
L++E S L+A+ K L E+ ED K+++L + + E + K + E ++
Sbjct: 1 LEEEKSSLQAELKRLLEKKEDAEEKIQKLQEDLEEQAEIANEAQQKYER-----ELVKHA 55
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK----LSEERRLLTVRSAELE 604
E L +++ E EI QL++E E LSE + LE
Sbjct: 56 EDIEE-----------LQALRKQLNELKKEIAQLKAEAESAQAELSEAEESWEEQKKMLE 104
Query: 605 YELEQ 609
EL +
Sbjct: 105 DELSE 109
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 32.8 bits (75), Expect = 1.1
Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 45/311 (14%)
Query: 509 DMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEA 568
D E + R+L + ++ ++ +E+ + + +L+ L+E
Sbjct: 151 DTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELA---------QRLDFLQFQLEEL 201
Query: 569 KEEFKEQTTEIEQLRSEVEKLSEERRL----LTVRSAELEYELEQRDYLIAVKTDGAEEL 624
EE Q E E L +E ++LS +L +A Q L+ + L
Sbjct: 202 -EEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLAL 260
Query: 625 QEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
+D + E+ ++E E +L+ L+ D + L + + L
Sbjct: 261 ASVIDGSLRELAEQ---VGNALTEVEEATRELQNYLDELEF-------DPERLNEIEERL 310
Query: 685 GSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK--DIAELKTKCEELTQQVTKLEA 742
+ K K ++ V++ K KE+ + + E L ++V KLE
Sbjct: 311 AQIKRLKRKYGASVE----------EVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEE 360
Query: 743 DCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATP 802
+ K + E+L K E LKA+ E AE ++K SL +
Sbjct: 361 ELD------KAAVALSLIRRKAAERLAKRVEQELKALAMEKAEFTV-EIKTSLPSG--AK 411
Query: 803 SQYRKQLEDQV 813
++ DQV
Sbjct: 412 ARAGAYGADQV 422
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 32.4 bits (74), Expect = 1.1
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 464 AEDDSEDETLNESAIEAQH---KLKIQNLKQELSELEAKYKSLSEEHEDM 510
A D E + + + + + KI ++ QE++EL+AK L ++H +
Sbjct: 444 ASDIQEAKEI----LVEHYDNIEQKIDDIDQEIAELQAKRTRLVQQHPRI 489
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 32.4 bits (74), Expect = 1.1
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 389 LAEFEGFDKKEFEYQIREEYREV----QEDFRKMFEEQQTDWENNVKKLREQHE-EDLER 443
L EF G D E +I+E Y EV E F +F+ + ++ +REQ+ E L+
Sbjct: 312 LCEFTGLD---LEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKY 368
Query: 444 QRKFYKTQIETLMTLVKNQQAEDD 467
K + + ++K E D
Sbjct: 369 LPKTLRLTFAEGIQMLKEAGVEVD 392
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 32.1 bits (73), Expect = 1.2
Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 28/165 (16%)
Query: 381 TIRLLEARLAEFEGFDKKEFEYQIREEYRE-------VQEDFRKMFEEQQTDWENNVKKL 433
T RL E R F+ KE + RE R + ++ +
Sbjct: 119 TGRLKEGRERHFQK--SKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQ 176
Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL--------- 484
++ EE + I L Q D+ ET+ +S +A +L
Sbjct: 177 QQWREEQEKYDAADKARAIYAL------QTKADERNLETVLQSLSQADFQLAGVAEKELE 230
Query: 485 ----KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+I+ + E+ ELE K + SG++ EL LV
Sbjct: 231 TVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELNYTPGQLV 275
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 32.3 bits (73), Expect = 1.2
Identities = 52/260 (20%), Positives = 115/260 (44%), Gaps = 7/260 (2%)
Query: 430 VKKLREQHEEDL-ERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQN 488
++K+R++++ + ER + + + V ++ E+ +++ + ++E H ++
Sbjct: 130 LRKIRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEA 189
Query: 489 LKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN--KELEGKVAQLSRRVEEME 546
++ + K + +++ KEL R +DL + ++L A+L +E+
Sbjct: 190 EEERIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEIS 249
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE-LEY 605
A + +E++ K+ L++A EE K +E L+ E+E+ +E L + E E
Sbjct: 250 IMASVASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEA 309
Query: 606 ELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKE---NLISQLKADLES 662
L K++ + +EK+ + K Q+ S E E E + +LK + E
Sbjct: 310 ASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQ 369
Query: 663 NRAESNQSAHDEQALQKEIK 682
+A + +A KE +
Sbjct: 370 TKAALETAELRLEAALKEAE 389
Score = 31.5 bits (71), Expect = 2.1
Identities = 58/315 (18%), Positives = 129/315 (40%), Gaps = 30/315 (9%)
Query: 541 RVEEMERGAQTENKPEEVKYLKSL------LDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
R EE+E+G Q + L L + ++E+ E + E+ +
Sbjct: 100 RAEELEQGIQELEVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICASK 159
Query: 595 LLTVRSAELEYEL-EQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLI 653
+ + EL E+ ++ L E +E++ K ++ YE+ + E E +
Sbjct: 160 VNEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEK-DQDRETYEKELKEAEKEL 218
Query: 654 SQLKADLESNR--AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV 711
+LK DL+ + + +++ + ++LQKEI + S+ K + + KA + K +
Sbjct: 219 ERLKQDLDPEKDLEKLAEASAELESLQKEISIMASVASVL-KELEEAKANLEKAAEEEKS 277
Query: 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKI 771
++ ++ ++++ E K + EEL ++ + E S + +L +
Sbjct: 278 LRNLVESLKQELEEEKKELEELREKEGEAEEAASSL-----------------EAELNRT 320
Query: 772 YEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQ 831
++ ++++ E+ + S EA A + + +++ LK E EQ + +
Sbjct: 321 KSEKESKAREKMVEIPLKLQQASSEAEEA--RKEAEAAREELRKLKEEAEQTKAALETAE 378
Query: 832 LKLLQKGEMINNLKA 846
L+L + KA
Sbjct: 379 LRLEAALKEAEAAKA 393
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 32.3 bits (75), Expect = 1.3
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKYLKSLLDEAKEE 571
+L EL E R+L T+ +EL+ + LS+ + + +R G E EVK LK + + E
Sbjct: 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAE 88
Query: 572 FKEQTTEIEQL 582
E E+E+L
Sbjct: 89 LDELEAELEEL 99
Score = 29.7 bits (68), Expect = 7.9
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 32/100 (32%)
Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714
+L+ +LE +AE N + K IG K K E
Sbjct: 39 ELQTELEELQAERNALS---------------------KEIGQAKRK-----------GE 66
Query: 715 DRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754
D + ++ ELK + + L ++ +LEA+ + L I N+
Sbjct: 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.4 bits (72), Expect = 1.3
Identities = 18/67 (26%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
EL +E + L + +ELE +VA+L ++E +E+ + E + EE ++ + K++ ++
Sbjct: 124 ELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRH-ADEIAFLKKQNQQL 182
Query: 576 TTEIEQL 582
+++EQ+
Sbjct: 183 KSQLEQI 189
Score = 29.1 bits (66), Expect = 7.2
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 472 TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL 531
TL ES++ + +Q +Q SELE ++K+L E +L + EL
Sbjct: 102 TLYESSVAFGMRKALQA-EQGKSELEQ--------------EIKKLEEEKEELEKRVAEL 146
Query: 532 EGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
E K+ + +R EE ER + + +E+ +LK
Sbjct: 147 EAKLEAIEKREEE-ERQIEEKRHADEIAFLK 176
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 32.2 bits (74), Expect = 1.3
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 487 QNLKQELSELEAKYKSLSEEHED-----MSGKLKELTRE---NRDLVTKNKELEGKVAQL 538
+L ++L L +Y+ L D + ++L++E +V K +E + L
Sbjct: 3 PSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDL 62
Query: 539 SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
+EM E PE + + A+EE KE +IE+L E++ L
Sbjct: 63 ED-AKEM---LAEEKDPE-------MREMAEEEIKELEAKIEELEEELKIL 102
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 32.1 bits (73), Expect = 1.4
Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 26/229 (11%)
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE-VEKLSEE---RRLLTVRSAELEYELEQR 610
+E+ LK L EA +E +E +E+E LRSE LS+E +RL L+ +L
Sbjct: 106 EDELAALKIRLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSLQDKLLLL 165
Query: 611 DYLIAVKTDGAEELQ----EKLDYMENKFQE--ESLVYERLMSEKENLISQLKADLESNR 664
D + ++ +E FQE E R +S+ +L+ L+ R
Sbjct: 166 DAAVKRHDGNVITAVLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLLR 225
Query: 665 AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIA 724
AE +Q LQ+ + +L K+K I LK +
Sbjct: 226 AEGESE---KQELQQYRQKAHRILQSKEKRINFLKEG----------CLFEGLDSSTAQI 272
Query: 725 ELKTKCEELTQQ---VTKLEADCQSYLNTIKNMENDERSTKHNQEKLLK 770
EL+ E +TKLE + ++ E + + K +
Sbjct: 273 ELEELKHESEHVQEEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPR 321
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 31.2 bits (71), Expect = 1.4
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 519 RENRDLVTKNKELEGKV-AQLSRRVEEMERGAQ-TENKPEEVKY---LKSLLD----EAK 569
R R KN + E + L++R++++ +G + E PE Y L L D E +
Sbjct: 41 RVERMEEIKNLKYELIMNDHLNKRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELE 100
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
E + +E+L+ +KL +E++ L + ELE E
Sbjct: 101 EANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKE 137
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 32.2 bits (74), Expect = 1.5
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQ 575
+L REN D V + + G A ++ E++ EE + L L+E + E E
Sbjct: 5 KLIRENPDAVREKLKKRGGDALDVDKLLELD---------EERRKLLRELEELQAERNEL 55
Query: 576 TTEI-----------EQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
+ EI E+L +EV++L E+ + L ELE EL+
Sbjct: 56 SKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100
Score = 31.4 bits (72), Expect = 2.5
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 667 SNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAEL 726
+E LQ E L K IG + ++D + ++ EL
Sbjct: 40 KLLRELEE--LQAERNELS-------KEIGRALKR----------GEDDAEELIAEVKEL 80
Query: 727 KTKCEELTQQVTKLEADCQSYLNTIKNMENDE 758
K K +EL + +LEA+ + L TI N+ ++
Sbjct: 81 KEKLKELEAALDELEAELDTLLLTIPNIPHES 112
>gnl|CDD|149086 pfam07820, TraC, TraC-like protein. The members of this family are
sequences that are similar to TraC. The gene encoding
this protein is one of a group of genes found on plasmid
p42a of Rhizobium etli CFN42 that are thought to be
involved in the process of plasmid self-transmission.
Mobilisation of plasmid p42a is of importance as it is
required for transfer of plasmid p42a, which is also
known as plasmid pSym as it carries most of the genes
required for nodulation and nitrogen fixation by the
symbiotic bacterium. The predicted protein products of
p42a are similar to known transfer proteins of
Agrobacterium tumefaciens plasmid pTiC58.
Length = 92
Score = 29.7 bits (67), Expect = 1.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 579 IEQLRSEVEKLSEERRLLTVRSAE 602
++R E+ KL E+ + R AE
Sbjct: 4 SSKIREEIAKLQEQLKQAETREAE 27
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 31.9 bits (73), Expect = 1.7
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 559 KYLKSLL-DEAKEEFKEQTTEI--EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI- 614
K L++LL +E KE T + E R+E KLS + E+ +
Sbjct: 261 KKLRNLLIRTHLQELKETTENLLYENYRTE--KLSGLKNSGEPSLKEIHEARLNEEEREL 318
Query: 615 -AVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRA 665
T+ E +++L+ +E EE + E + + L+ LE ++
Sbjct: 319 KKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKS 370
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 32.0 bits (73), Expect = 1.7
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 455 LMTLVKNQQA---EDDSEDETLNESAIEAQHKL--KIQNLKQELSELEAKYKSLSEEHED 509
+ V Q +E E L A Q IQ L + + L+ + E+ +
Sbjct: 36 ELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQL 95
Query: 510 MSGKLKELTRENRDLV-----TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL 564
+ L +L+ E ++L N+ L Q +++ + R + K E L+
Sbjct: 96 LIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLR--EVLEKFREQ--LEQR 151
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLT 597
+ E+ EE EI++L E+++L++E LT
Sbjct: 152 IHESAEERSTLLEEIDRLLGEIQQLAQEAGNLT 184
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 31.6 bits (72), Expect = 1.7
Identities = 55/275 (20%), Positives = 115/275 (41%), Gaps = 18/275 (6%)
Query: 472 TLNESAIEAQHKLKIQNLKQEL-------SELEAKYKSLSEEHEDMSGKLKELTRENRDL 524
+L + +LK + LK+E+ EL + L+E+ ++++ K++EL + ++L
Sbjct: 1 SLAMLDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQEL 60
Query: 525 VTKNKELEGKVAQL-SRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLR 583
+ E+ +V +L +R E + + + E+K ++ + K EIE+L
Sbjct: 61 REERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLE 120
Query: 584 SEVEKLS---EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME--NKFQEE 638
+ + EE R L + EL ELE + E E + + + E+
Sbjct: 121 KKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEK 180
Query: 639 SLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDL 698
E + +L + + R E+++ + L K+I L + + +L
Sbjct: 181 IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240
Query: 699 KAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEEL 733
+ KI K ++ ++++ ELK + EE+
Sbjct: 241 EKKIKALRAK---EKAAKRREKRE--ELKERAEEI 270
Score = 30.8 bits (70), Expect = 3.4
Identities = 50/261 (19%), Positives = 107/261 (40%), Gaps = 28/261 (10%)
Query: 428 NNVKKLREQHEE---DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE-AQHK 483
+K+ E+ +E +L ++ + + L V+ + + E +E E + K
Sbjct: 16 KQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELK 75
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDL-------------VTKNKE 530
K + +L EL +Y+ L E+ + + + + R++ + +E
Sbjct: 76 EKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERE 135
Query: 531 LEGKVAQLSRRVEE----MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEV 586
L K+ +L + +E+ +E + + E+ LK E E+ +E E ++ E+
Sbjct: 136 LVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEM 195
Query: 587 EKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLM 646
KL EE L + EL E + + +EL E+ ++N+ +E + L
Sbjct: 196 IKLFEEADELRKEADELHEEFVEL-------SKKIDELHEEFRNLQNELRELEKKIKALR 248
Query: 647 SEKENLISQLKADLESNRAES 667
++++ + K + RAE
Sbjct: 249 AKEKAAKRREKREELKERAEE 269
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A. Members of this
family are the phage shock protein PspA, from the phage
shock operon. This is a narrower family than the set of
PspA and its homologs, sometimes several in a genome, as
described by pfam04012. PspA appears to maintain the
protonmotive force under stress conditions that include
overexpression of certain phage secretins, heat shock,
ethanol, and protein export defects [Cellular processes,
Adaptations to atypical conditions].
Length = 219
Score = 31.1 bits (71), Expect = 1.8
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 515 KELTRENRDLVTKNKELEGKVAQL--SRRVEEMERGAQTENKP--EEVKYLKSLLDEAKE 570
KEL R L + + + K A+L S+ E++ R A E + E + L+ L +E
Sbjct: 55 KELERRVSRLEAQVADWQDK-AELALSKGREDLARAALIEKQKAQELAEALERELAAVEE 113
Query: 571 EFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA----EELQE 626
+ +I +L++++ + ++ L +R L+ R L + ++D A E+ +
Sbjct: 114 TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYER 173
Query: 627 KLDYME 632
++D +E
Sbjct: 174 RVDELE 179
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 31.6 bits (72), Expect = 1.8
Identities = 52/266 (19%), Positives = 121/266 (45%), Gaps = 28/266 (10%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
K++ L + L+EL + K L ++ + + + ++L +E L +++ K ++E
Sbjct: 23 KLETLIKRLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHS----KAILARSKLES 78
Query: 545 MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE-VEKLSEERRLLTVRSAEL 603
+ R Q NK KEE K ++ E E+ R E EK + ++
Sbjct: 79 LCRELQKHNK------------TLKEENKARSDEEEEKRKELTEKFQSTLK-------DI 119
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
+ ++E+ + EEL+EKL + +++ +E+L+ K+ A LE
Sbjct: 120 QDQMEEHSNPNHKLCEENEELREKLKELIEQYELREQHFEKLLKTKDLEQQLNDAKLEQA 179
Query: 664 RAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKY-EKYYAVMKEDRKTKEKD 722
+ ++ Q + ++ + + + +T +L+A+++ Y +K+ +D K +
Sbjct: 180 QEQAEQEQEKHKREKEILLKEAAQVSTLKETEKELRAQLNLYSDKFKEF--QDTLNKSNE 237
Query: 723 IAEL-KTKCEELTQQVTKLEADCQSY 747
+ K + E++++++ KLE + ++
Sbjct: 238 VFLTFKQEMEKMSKKIKKLEKENLAW 263
>gnl|CDD|217789 pfam03915, AIP3, Actin interacting protein 3.
Length = 424
Score = 31.9 bits (73), Expect = 1.8
Identities = 20/127 (15%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 745 QSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQ 804
+ L ++++ + + + + ++ +++ K A L S ++ A
Sbjct: 147 PAGLKELQSLRRELAVLRQTHSDFKSEIQASISSILEKINAFKSASLNASGSSNRAYMES 206
Query: 805 YRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKG 864
+K+L + +SL +++ +++ L+ + Q+G + Q+E Q++ Q+ LK
Sbjct: 207 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRG--VRPGPKQLETVQKEIQKAEKELKK 264
Query: 865 LENQMAK 871
+E + +
Sbjct: 265 MEEYIKR 271
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 28.7 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530
K E+ ELE K + L E+E + +++ L RE L ++ +E
Sbjct: 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELEE 65
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 30.4 bits (69), Expect = 1.9
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 766 EKLLKIYEDRLKAVQDELAEM--KCAQLKPSLEASAATPSQYRKQLEDQVNS--LKAELE 821
+KLL + E + + ELA+ + +L+ L+ +Y +Q ++V + EL
Sbjct: 5 QKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELS 64
Query: 822 QRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLE 866
+R L ++ Q+ + + L+ ++E +++ + R LK LE
Sbjct: 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALE 109
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 32.0 bits (73), Expect = 1.9
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 754 MENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLED-- 811
++N S ++ E LK + + + AE K QL+ +L + + ++QLE+
Sbjct: 530 LKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQ 589
Query: 812 -QVNSLKAELEQRHN 825
+ ++ AE+ Q+
Sbjct: 590 QALLAIGAEVYQQGG 604
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 31.7 bits (72), Expect = 2.0
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 31/123 (25%)
Query: 468 SEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHED---MSGKLKELTRENRDL 524
S + + +H + ++Q L A+Y EE +D M G L++L+RE+R +
Sbjct: 336 STSKMATPGIVGERHYDLAREVRQTL----AQY----EELKDIIAMLG-LEQLSREDRRV 386
Query: 525 VTKNKELE-----------------GKVAQLSRRVEEMERGAQTE--NKPEEVKYLKSLL 565
V + + LE GK L ++ ER E + PE Y+ +
Sbjct: 387 VNRARRLERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYPERDLYMIGKI 446
Query: 566 DEA 568
DEA
Sbjct: 447 DEA 449
>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
Length = 206
Score = 31.2 bits (71), Expect = 2.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 792 KPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS 851
PSL K L D++N++ QR ++Q K+ Q +IN LK + +K
Sbjct: 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQR---TAEMQQKVAQSDSVINGLKEENQKL 144
Query: 852 QQQ 854
+ Q
Sbjct: 145 KNQ 147
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats.
Length = 101
Score = 29.6 bits (67), Expect = 2.0
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
++ + + LE K + L+ ED+ L+ + L+ K++ E ++ RVE +
Sbjct: 5 RDADELEAWLEEKEQLLA--SEDLGKDLESV----EALLKKHEAFEAELEAHEERVEALN 58
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
+ L EE +E+ E+ + E+++L+EERR
Sbjct: 59 ELGEQ---------LIEEGHPDAEEIEERLEELNERWEELKELAEERR 97
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 31.8 bits (72), Expect = 2.1
Identities = 42/269 (15%), Positives = 101/269 (37%), Gaps = 23/269 (8%)
Query: 562 KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGA 621
L++ + ++ T I L + + + E+ L EL L+Q + L++ + D
Sbjct: 80 TVTLNQQYQRLQQDLTAIHALLASLPQ--NEQAALQQGLQELRQLLQQINDLVSARIDVD 137
Query: 622 EELQ---EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
L E++D++ F E L E + L + + ++ Q + Q
Sbjct: 138 RRLALFAEQIDWLHQDFGME---LSPLRQELQWQQETLLDGITQAQVDNGQRVLQYRLYQ 194
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
+E++ + ++L + + L+ ++ + +K + ++ D++ +L + L QV
Sbjct: 195 QELEEVYNVLRLEGQIQQSLRDRVVETQKLNSTIQLDQQ--HTAYLDLLANADALFIQVL 252
Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEAS 798
A T+ + ++ + HN +DE+ + S +
Sbjct: 253 GQTAS----TVTLHQLSDELDAIGHNDLSH-----PITVDGRDEIGAQSEQLILYSKKVE 303
Query: 799 AATPSQYRKQLEDQVNSLKAELEQRHNVV 827
A +R Q+ + + +L +
Sbjct: 304 EA----FRTNALSQIGNSQQQLITCDGQI 328
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 31.5 bits (72), Expect = 2.1
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 522 RDLVTKNKELEGKVAQLSRR----VEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTT 577
R LV + KEL ++A+L E ER + E ++ ++ + +E T
Sbjct: 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ--IQQAVQSETQEL---TK 116
Query: 578 EIEQLRSEVEKLSEERRLLTVRSA 601
EIEQL+SE ++L L R A
Sbjct: 117 EIEQLKSERQQLQGLIDQLQRRLA 140
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.5 bits (71), Expect = 2.3
Identities = 31/164 (18%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 430 VKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSED-ETLNESAIEAQHKLKIQN 488
V+ LRE +E+ + +R MT +K +++++D++ + L E + Q
Sbjct: 183 VEALREDNEKGVNFRRD---------MTDLKERESQEDAKRAQQLKEELDKKQIDADKAQ 233
Query: 489 LKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG 548
+ + + ++ +++ K +E + T + + + +VA+ +R E +
Sbjct: 234 -----QKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQI 288
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
+N E +K + K+E K E E E +K E
Sbjct: 289 EIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREP 332
Score = 31.1 bits (70), Expect = 2.9
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 579 IEQLRSEVEKLSEERRLLT----VRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENK 634
+E LR + EK RR +T S E +Q + K A++ Q+K D+ ++
Sbjct: 183 VEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDN 242
Query: 635 FQEESLVYERLMSEKENL--ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692
++ + E +NL + + E + NQ E+A + KN L KD
Sbjct: 243 ADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKD 302
Query: 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAE 725
DLK + EK + + + K + +AE
Sbjct: 303 HKAFDLKQESKASEKEAEDKELEAQKKREPVAE 335
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 31.7 bits (73), Expect = 2.3
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND--E 758
+ E++ A+ +E+R+ E+ I EL+ + +E+ +Q+ +LE + ++ ++ +
Sbjct: 162 EPLTEEEFEALPEEEREELEEKIDELEEELQEILRQLRELE---REAREKLRELDREVAL 218
Query: 759 RSTKHNQEKLLKIYEDR------LKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLED- 811
+ ++L + Y D L AVQ+++ E EA AA Q
Sbjct: 219 FAVGPLLDELKEKYADLPKVLAYLDAVQEDILE-NLDLFLEEDEAEAAASGA-EDQFRRY 276
Query: 812 QVN 814
QVN
Sbjct: 277 QVN 279
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 30.4 bits (69), Expect = 2.3
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 636 QEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTI 695
+E+SL Y++L+ K L QL A+L+ + +E L+K+++ L L +K
Sbjct: 16 KEDSLDYDQLLRRKRALERQLAAELKQLELLEEEIRREEAELEKDLEYLQEL----EKNA 71
Query: 696 GDLKAKI-HKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754
L+ + + + + V++ ++ L+ EL+++ D + L+ +K +
Sbjct: 72 KALEREREEESKNLHPVLRLLESEVLEENELLQDSLLELSERNFSPNLDPEL-LDLLKQL 130
Query: 755 ENDERSTKHNQEKLLKIYE--DRLKAVQD 781
S + N E+L + E +RL A D
Sbjct: 131 NKHLESLQGNLEQLAGLVEALERLYAALD 159
>gnl|CDD|225342 COG2721, UxaA, Altronate dehydratase [Carbohydrate transport and
metabolism].
Length = 381
Score = 31.5 bits (72), Expect = 2.3
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 666 ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAE 725
E+NQ A + L + + L + ++ T+ +++A I ++ V D++ ++E
Sbjct: 89 ENNQLA---ERLADGGERVRFLTIQEEGTLKEIEAGIEIAKEMLQVANADKRE-PTPLSE 144
Query: 726 LK--TKC 730
LK KC
Sbjct: 145 LKVGLKC 151
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 31.3 bits (72), Expect = 2.4
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL-SEERRLLT 597
E L+ + + + + ++ E E+L E+E+L SE +L +
Sbjct: 8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 31.6 bits (72), Expect = 2.4
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 475 ESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGK 534
+AIE ++ + LK+ L+ L ++ E + K L +E L K K + K
Sbjct: 697 NAAIEYLNE-QEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESL--KLKIADQK 753
Query: 535 VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
+ +L + E + VK L ++D ++ K T ++L+S++
Sbjct: 754 IDELKDKAETI----------NGVKVLVEVVD--AKDMKSLKTMADRLKSKLGS 795
Score = 31.2 bits (71), Expect = 3.2
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 569 KEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIA-VKTDGAEELQEK 627
EE+K E+E L+ K+++++ AE + L+ V + L+
Sbjct: 732 FEEWKALQKELESLK---LKIADQKIDELKDKAE---TINGVKVLVEVVDAKDMKSLKTM 785
Query: 628 LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ 669
D +++K V + K L+ + D+ + ++ +
Sbjct: 786 ADRLKSKLGSAIYVLASFANGKVKLVCGVSNDVLNKGIKAGE 827
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 31.4 bits (72), Expect = 2.5
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
KEL +++L+ K KEL +V S VEE E + + E + + A E +E
Sbjct: 11 KELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE 70
Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQR 610
+ + E+ +E + E E +
Sbjct: 71 EAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARP 106
>gnl|CDD|221232 pfam11802, CENP-K, Centromere-associated protein K. CENP-K is one
of seven new CENP-A-nucleosome distal (CAD) centromere
components (the others being CENP-L, CENP-O, CENP-P,
CENP-Q, CENP-R and CENP-S) that are identified as
assembling on the CENP-A nucleosome associated complex,
NAC. The CENP-A NAC is essential, as disruption of the
complex causes errors of chromosome alignment and
segregation that preclude cell survival despite
continued centromere-derived mitotic checkpoint
signalling. CENP-K is centromere-associated through its
interaction with one or more components of the CENP-A
NAC.
Length = 273
Score = 31.0 bits (70), Expect = 2.6
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 430 VKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNL 489
V+ E+ +EDLER++++ Q + ++ + +Q+E ++ T +ES I + K K+ +
Sbjct: 113 VQSKNEKLKEDLEREQQWLDEQ-QQILDSLNERQSELKNQVVTFSESRIFQELKTKMLRI 171
Query: 490 KQELSELEAKYKSLSEEHEDMSGK 513
K+ +L + EEH +
Sbjct: 172 KEYKEKLLSALGEFLEEHFPLPEA 195
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 31.2 bits (70), Expect = 2.7
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 514 LKELTRENRDLVTKNKELE-------------GKVAQLSRRVEEMERGAQTENKPEEVKY 560
++ + REN DL + E E K AQ + E QT+ EE
Sbjct: 294 IERVARENADLQRQKLEAEQAAQAAQEAKAKAEKEAQAREAKLQAECARQTQLALEEKAA 353
Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVE 587
L++ D +E + + E EQLR E+
Sbjct: 354 LRAERDNLAKELEAKKREAEQLRMELA 380
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 31.3 bits (72), Expect = 2.8
Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 477 AIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK----------ELTRENRDLVT 526
A+ Q+K + ++++ A++K ++ E + +LK EL + RD+
Sbjct: 226 ALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKSLRLTSKQIDELVEQLRDINK 285
Query: 527 KNKELEGKVAQLSR-----RVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQ 581
+ + E ++ +L R + ++ E ++ + E EI++
Sbjct: 286 RVRGQERELLRLVERLKMPRKDFLKLFQGNELDITWLEKEIASGKPWSEFLVRVYDEIKK 345
Query: 582 LRSEVEKLSEE 592
L+ E+E + EE
Sbjct: 346 LQQELEAIEEE 356
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 29.7 bits (67), Expect = 2.9
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDL 830
LKA Q ELA K QL L A A + + QL Q+ +A L QR + L
Sbjct: 32 NRVLKAQQAELA-SKANQLI-VLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERL 87
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 31.4 bits (72), Expect = 2.9
Identities = 25/156 (16%), Positives = 67/156 (42%), Gaps = 21/156 (13%)
Query: 437 HEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
+E++LE R+ + Q+E L Q + ++ + S ++ + L++ +L
Sbjct: 339 NEDELETVREL-EKQLEELEAQYD--QLVERIAEKKVAYSELQEE-------LEEIEKQL 388
Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE 556
E + +E E++S L+ L ++ E K+ + +++ E++R + N P
Sbjct: 389 EE----IEKEQEELSESLQGLRKDEL-------EAREKLQEYRQKLHEIKRYLEKSNLPG 437
Query: 557 EVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE 592
+ +E + E+ ++ ++ ++ +
Sbjct: 438 LPEDYLEYFFVVSDEIEALADELNEVPINMDAVNRQ 473
Score = 31.0 bits (71), Expect = 3.2
Identities = 72/351 (20%), Positives = 149/351 (42%), Gaps = 73/351 (20%)
Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE------------RRLLTVRSA-- 601
+ +K ++ LLD +E+ ++ E+ +L+ EK +E + LL +
Sbjct: 101 KAIKEIEELLDTIEEDIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSYG 160
Query: 602 ELEYELEQRDYLIAVKTDGAEELQEKLDYME-----NKFQEESLVYERLMSEKENLISQL 656
ELE++ + + + EL E DY+E K +EE+ E+ M E L+ +L
Sbjct: 161 PALDELEKQLDELEEEFEQFVELTESGDYLEAREVLLKLEEETDALEQKMEEIPPLLKEL 220
Query: 657 KADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDR 716
+ + E ++ + E + +E + +D +K + DLK +I +
Sbjct: 221 QNEFPDQLEEL-KAGYRE--MTEEGYHFDH--LDIEKELQDLKEQIDQNLA--------- 266
Query: 717 KTKEKDIAELKTKCEELTQQVTKL------EADCQSYLNTIKNMENDERSTKH--NQEKL 768
+E D+ E + + EE+ +++ L E + ++ KN++ +H Q K
Sbjct: 267 LLEELDLDEAEEENEEIEERIDTLYDILEKEVKAKKFV--EKNIDKLTDFLEHAREQNKQ 324
Query: 769 LKIYEDRL--------------KAVQDELAEMKCA--QLKPSLEASAATPSQYRKQLEDQ 812
L + DRL + ++ +L E++ QL + S+ +++LE+
Sbjct: 325 LLLELDRLQQSYTLNEDELETVRELEKQLEELEAQYDQLVERIAEKKVAYSELQEELEEI 384
Query: 813 VNSLKAELEQRHNVVRDLQLKLLQKGEM------------INNLKAQMEKS 851
L+ E+E+ + + L+ L+K E+ ++ +K +EKS
Sbjct: 385 EKQLE-EIEKEQEELSE-SLQGLRKDELEAREKLQEYRQKLHEIKRYLEKS 433
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 31.5 bits (72), Expect = 2.9
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE---------- 532
K ++++L++EL+ELE +Y L E+ + ++ + + ++ ELE
Sbjct: 433 KERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAK 492
Query: 533 ------GKVAQLSRRVEEMERGAQTENKP----EEV 558
GK+ +L +R++ E E KP EEV
Sbjct: 493 AAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEV 528
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 30.4 bits (69), Expect = 3.0
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRE--NRDLVTKNKELEGKVAQLSRRVE 543
+ L E+ EL + + L ++ + +LK LT + +L + +EL+ +V ++ ++E
Sbjct: 74 LNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEKLE 133
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFK 573
+E G PEE++ +K + +E+K
Sbjct: 134 SLEEG-WKPVTPEEMEKVKKEYKDLHKEWK 162
Score = 28.8 bits (65), Expect = 9.3
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 692 DKTIGDLKAKIHKYEKYYAVMKEDRK--TKEKDIAELKTKCEELTQQVTKLEADCQSYLN 749
D I +L+ ++ ++ + ++ + K T + EL+ + +EL ++V ++E +S
Sbjct: 78 DMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEKLESLEE 137
Query: 750 TIKNMENDERSTKHNQEKLLK 770
K + +E + K L
Sbjct: 138 GWKPVTPEEMEKVKKEYKDLH 158
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 31.6 bits (71), Expect = 3.0
Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 16/289 (5%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
K I +K+EL E L +E +D+ K E+ E + EL+ K+ +S +
Sbjct: 557 KKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKN 616
Query: 543 EEMERGAQ----TENKPEEVKYL-KSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLT 597
E +++ EN + L K + E K + ++SE+ K+ E+ +
Sbjct: 617 EYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSELSKIYEDD--ID 674
Query: 598 VRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE-ESLVYERLMSEKEN----- 651
EL +++ ++L+ K+D +K Q E+ E +S EN
Sbjct: 675 ALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNEL 734
Query: 652 --LISQLKADLESN-RAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY 708
+I ++K + + N+ D + +KE+ N + + + K+KI + + +
Sbjct: 735 LDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNH 794
Query: 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMEND 757
Y K++D + K +E + ++ E + +N +K M++D
Sbjct: 795 YNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDD 843
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 31.0 bits (71), Expect = 3.1
Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 57/292 (19%)
Query: 550 QTENKPEEVKYLKSLLD-------EAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE 602
Q+ KPE + LLD A+E ++E +Q R E+E L E+ R R+
Sbjct: 133 QSLLKPELQR---QLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADL 189
Query: 603 LEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYER-LMSEKENLISQLKADLE 661
L+++L EEL E+L+ ++E L ER +S E L ++ LE
Sbjct: 190 LQFQL--------------EEL-EELNLQPG--EDEELEEERKRLSNSEKLAEAIQNALE 232
Query: 662 SNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK 721
E + + L + ++ L L + D + +L + E Y + E+
Sbjct: 233 LLSGEDDTVSALSL-LGRALEALED-LSEYDGKLSELAELLE--EALYEL--------EE 280
Query: 722 DIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERST--------KHNQEKL--LKI 771
EL+ +EL +LE + L +K++ T +E+L L
Sbjct: 281 ASEELRAYLDELEFDPNRLEE-VEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDN 339
Query: 772 YEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQ-LEDQVNSLKAELEQ 822
E+ L+A++ E+ + LK L +A S RK+ ++ + AEL+
Sbjct: 340 SEESLEALEKEVKK-----LKAELLEAAEALSAIRKKAAKELEKEVTAELKA 386
Score = 29.9 bits (68), Expect = 7.6
Identities = 44/230 (19%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTR------ENRDLVTKNKELE--GKVAQL 538
+ ++EL +L+ K + ++ + + +L+EL E+ +L + K L K+A+
Sbjct: 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEA 226
Query: 539 SRRVEEM-----ERGAQTENKPEEVKYLKSL------LDEAKEEFKEQTTEIEQLRSEVE 587
+ E+ + + ++ L+ L L E E +E E+E+ E+
Sbjct: 227 IQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELR 286
Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
+E L LE E+ L ++ +++ L+Y++ K +EE +L
Sbjct: 287 AYLDE---LEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLD-KIKEE---LAQL-D 338
Query: 648 EKENLISQLKADLESNRAESNQSAHD------------EQALQKEIKNLG 685
E + L+ +++ +AE ++A E+ + E+K L
Sbjct: 339 NSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALA 388
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 30.9 bits (70), Expect = 3.2
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 404 IREEYREVQEDFRKMFEEQQTDWE--NNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN 461
EE++E++++F+++ E + + V+KL+EQ + RQRK K I +L L K+
Sbjct: 2 CEEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKS 61
Query: 462 QQAEDDSEDETLNESAIEAQ 481
ED E L E E +
Sbjct: 62 LTPEDSELVEQLEEQIKERK 81
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 31.2 bits (72), Expect = 3.2
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 26/111 (23%)
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN 528
++ L E A LK + SEL + ++L EE LKEL +E L K
Sbjct: 699 QEALLKELA---------ALLKAKPSELPERVEALLEE-------LKELEKELEQL--KA 740
Query: 529 KELEGKVAQLSRRVEEMERG-----AQTENKPEEVKYLKSLLDEAKEEFKE 574
K L + +E+ G AQ E + K L++L D+ K++
Sbjct: 741 KLAAAAAGDLLAQAKEVN-GVKVLAAQVEGV--DAKALRTLADDLKDKLGS 788
Score = 29.7 bits (68), Expect = 8.8
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 763 HNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQ 822
+ QE LLK LKA EL E + L + K+LE ++ LKA+L
Sbjct: 697 NEQEALLKELAALLKAKPSELPE-RVEALL-----------EELKELEKELEQLKAKL-- 742
Query: 823 RHNVVRDLQLKLLQKGEMINNLK 845
LL + + +N +K
Sbjct: 743 ----AAAAAGDLLAQAKEVNGVK 761
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 30.8 bits (70), Expect = 3.3
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 510 MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE-----VKYLKSL 564
M LK + L +L+ + +L E + PEE ++LK
Sbjct: 275 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDP----KDTSPEEFFKDFNEFLKEF 330
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS 600
A+E K++ E E+ + V++ +E + + +
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQK 366
>gnl|CDD|234345 TIGR03755, conj_TIGR03755, integrating conjugative element protein,
PFL_4711 family. Members of this protein family are
found in genomic regions associated with conjugative
transfer and integrated TOL-like plasmids. The specific
function is unknown [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 418
Score = 30.7 bits (70), Expect = 3.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 807 KQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLE 866
+L+ ++N+LK ELE R + + L +LQ+ +A +QQ L L
Sbjct: 360 DKLDREINNLKTELELRKELASNTALTILQRHH---ARRASSSPGIEQQDPDPKRLNDLR 416
Query: 867 NQ 868
Sbjct: 417 VP 418
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.2 bits (71), Expect = 3.4
Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 37/275 (13%)
Query: 485 KIQNLKQELSELEAKYKSLS---EEHEDMSGK-----LKELTREN----RDLVTKNKEL- 531
+ L++EL+ L K + + ++ +KEL + +D++ K E
Sbjct: 1000 LLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKI 1059
Query: 532 --EGKVAQLSRRVEEMERGAQTENKPEEVKYL--KSLLDEAKEEFKEQTTEIEQLRSEVE 587
E + + E + YL + KE+ ++ E+E+ E+E
Sbjct: 1060 TAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELE 1119
Query: 588 KLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMS 647
KL T + LE +L++ +E L+ E ++E +RL
Sbjct: 1120 KLKNT----TPKDMWLE-DLDK--------------FEEALEEQEEVEEKEIAKEQRL-K 1159
Query: 648 EKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
K + + + E + +K S VD D+ +K
Sbjct: 1160 SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN 1219
Query: 708 YYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA 742
+ED + ++ + K + + + +
Sbjct: 1220 SSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSS 1254
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 30.7 bits (69), Expect = 3.6
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLI 614
F T + +EV + E +++ + E+EY DYL+
Sbjct: 60 PRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEIEY-----DYLV 99
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 31.0 bits (71), Expect = 3.6
Identities = 44/247 (17%), Positives = 99/247 (40%), Gaps = 38/247 (15%)
Query: 471 ETLNESAI-EAQHKLKIQNLKQELSELEAKYKS------LSEEHEDMSGKLKELTRENRD 523
+ LN+ + EA+ KL Q+L+Q L+ L+ + L ++ KL++ E
Sbjct: 46 DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA 105
Query: 524 LVTKNKELEGK------VAQLSRRVEEMERGAQTENKPEEVKYLKSLL-------DEAKE 570
L N E + + QL R+ + Q +N ++ S L + A+
Sbjct: 106 LKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQA 163
Query: 571 EFKEQTTEIEQLRSEV-------EKLSEERR-LLTVRSAELEYELEQRDYLIAVKTDGAE 622
+ ++Q+R+ + + L +R LL A L + + + + T +
Sbjct: 164 ALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQD 223
Query: 623 ELQEKLDYME---NKFQEE-----SLVYERLMSEKENLISQLKADLESNRAESNQSAHDE 674
LQ++ DY+ + + + + + ++ E + + ++ E+ R ++N E
Sbjct: 224 LLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQE 283
Query: 675 QALQKEI 681
+ ++
Sbjct: 284 LEINLQL 290
>gnl|CDD|220494 pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 120
Score = 29.2 bits (66), Expect = 3.8
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
E +L+ + + L +V + +EE+E + E + LK L E +E+ + EI
Sbjct: 7 EANELLPELRRLLEEVREAKAELEELEAALSEGERSLEARGLKEELRELEEQIRAAIAEI 66
Query: 580 EQLRSEVEKL 589
E+L EV+ L
Sbjct: 67 EELGIEVKDL 76
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 31.0 bits (70), Expect = 3.9
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
K Q DDS+D+ S + + + +K L + + LS ED G L
Sbjct: 15 KVIQIGDDSDDDEPIGSLFKLKRPKNSKKVKVGLESTGKREEKLSALDEDSEGMDDTLAS 74
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYL----KSLLDEAKEE 571
K L+G + M +GA EN+ E L K LD E+
Sbjct: 75 F-------RKRLKGPKKGVGSVSARMSQGALLENQEEVDTVLNEGSKRSLDGNLED 123
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 30.4 bits (69), Expect = 3.9
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 493 LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTE 552
L ++A+ K ++ E D K +E +E R+ KN+EL+ + L + +E AQ E
Sbjct: 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEE---AQAE 87
Query: 553 NKPEEVKYLKSLLDEAKEEFKE-QTTEIEQLRSEVEKLSEERR 594
+ LLDEA+EE E + E LR E LS+E R
Sbjct: 88 R--------QRLLDEAREEADEIREKWQEALRREQAALSDELR 122
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 29.7 bits (67), Expect = 4.0
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 427 ENNVKKLREQH----EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQH 482
E ++K EQ E++LE+++K + +IE L V+ + + + +
Sbjct: 69 EKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQLELKAKNLSD----------- 117
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
++ L++ +EL+ +Y SL E + + E +D +
Sbjct: 118 --QVSRLEERETELKKEYNSLHERYTKLLKNYVEYVERQKDEI 158
>gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein
family. The model describes the exopolysaccharide
transport protein family in bacteria. The transport
protein is part of a large genetic locus which is
associated with exopolysaccharide (EPS) biosynthesis.
Detailed molecular characterization and gene fusion
analysis revealed atleast seven gene products are
involved in the overall regulation, which among other
things, include exopolysaccharide biosynthesis, property
of conferring virulence and exopolysaccharide export
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 754
Score = 30.7 bits (69), Expect = 4.2
Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 22/233 (9%)
Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551
+ AK +S + + ++ ++ +L++++RD + + L +
Sbjct: 181 IAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLA 240
Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRD 611
E E ++ + A E ++ ++ L V S++L+ E +
Sbjct: 241 ELNTE---LSRARANRAAAEGTAD-----SVKKALQNGGSLDVLPEVLSSQLKLEDLIQR 292
Query: 612 YLIAVKTDGAEELQEKLDYMEN--KFQEESLVYE--------RLMSEKENLISQLKADLE 661
++ AE D + + ++ SE + + L +
Sbjct: 293 ----LRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQAD 348
Query: 662 SNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714
+ +A +Q D L+ G VD D D AK YE Y ++
Sbjct: 349 AAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQ 401
>gnl|CDD|165311 PHA03011, PHA03011, hypothetical protein; Provisional.
Length = 120
Score = 29.1 bits (65), Expect = 4.6
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 633 NKFQEE---SLVYE--RLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSL 687
NKF +E +L++E ++ KE I+ + L+ A+ N+ + ++ EIK+L +
Sbjct: 34 NKFDDEYLANLIFEPEQIFDFKEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEII 93
Query: 688 LVDKDKTIGDLKAKIHK 704
+ D D I L+A+I K
Sbjct: 94 IQDNDDEIHFLRAEIDK 110
>gnl|CDD|218852 pfam06008, Laminin_I, Laminin Domain I. coiled-coil structure. It
has been suggested that the domains I and II from
laminin A, B1 and B2 may come together to form a triple
helical coiled-coil structure.
Length = 263
Score = 30.0 bits (68), Expect = 4.6
Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 18/210 (8%)
Query: 479 EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538
+ K ++++L++ LS+L ++L ++ K +++ + K L + L
Sbjct: 39 ISATKRQLEDLEKALSKLAQDAENLQKKANQALAKAQKVNAAIERTLGHAKTLAEAIKNL 98
Query: 539 SRRVEEMERGAQTENKPEE---VKYLKSLLDEAK---EEFKEQTTEIEQLRSEVEK---- 588
++E+ + L +L EA+ E +E+ + + +E E
Sbjct: 99 RDNIKEILEKLAGLGENAFALPGSALSRMLAEAQRMLGEIRERDFQKQLQNAEAELKAAE 158
Query: 589 --LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYE--- 643
L+ + E E E + +L+E LD + K ++ +
Sbjct: 159 ELLNRVQTWFQTPQEENEGLFEALRDDLNEYEAKLSDLRELLDEAQAKTRDAERLNLANQ 218
Query: 644 ---RLMSEKENLISQLKADLESNRAESNQS 670
R EK+ +S+LK E + A S
Sbjct: 219 KRLREFQEKKQEVSELKNQAEEHLATGRDS 248
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 30.2 bits (69), Expect = 4.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 487 QNLKQELSELEAK---YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
Q + +ELS L+AK + L + +D+ L EL E D T E E ++ L +++
Sbjct: 52 QKVTKELSSLKAKLDTLEELRQRLDDLEE-LLELAEEEDDEETLA-EAEAELKALEKKLA 109
Query: 544 EME 546
+E
Sbjct: 110 ALE 112
>gnl|CDD|221833 pfam12889, DUF3829, Protein of unknown function (DUF3829). This is
a small family of proteins from several bacterial
species, whose function is not known. It may, however,
be related to the GvpL_GvpF family of proteins,
pfam06386.
Length = 277
Score = 30.1 bits (68), Expect = 4.7
Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 36/184 (19%)
Query: 366 EMTDYFQGSH--DDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQ 423
E+ Y+ DD + + L A+L EE++ E F E+
Sbjct: 96 ELEAYYDSKDYKDDNFAKGKELHAKL------------LAAYEEFKAAYEAFLAALEKIN 143
Query: 424 TDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHK 483
+ + E+L+++ K L+ + + LN + + K
Sbjct: 144 -------DERLLEQLEELKKEGKKIAYYTLELLLEAE----------QLLNLFSSKDVAK 186
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
+L L+ELE + L + ++ G ++ + E + RV
Sbjct: 187 KDAADLDAALAELEKALEDLKKLTKE-DGDEEKASSFMSSA----DEFKSSAKSFIGRVR 241
Query: 544 EMER 547
+ +
Sbjct: 242 DKKP 245
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 30.6 bits (69), Expect = 4.9
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 469 EDETLNESAI-EAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN------ 521
E+ L ESA EA + +I L+ EL +L A+ ++ E+E +S +EL EN
Sbjct: 18 EESLLQESASKEAYYLQRILELQAELKQLRAELSNVQAENERLSSLSQELKEENEMLELQ 77
Query: 522 ----RDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDE---AKEEFKE 574
RD + + K E ++ Q +EE Q ++V L+ E K E +
Sbjct: 78 RGRLRDEIKEYKFREARLLQDYSELEEENISLQ-----KQVSVLRQSQVEFEGLKHEIRR 132
Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
E E L S++E E RL + +LE LE
Sbjct: 133 LEEETELLNSQLE---EAARLKEIAEKQLEEALE 163
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in length.
The function of this family is unknown.
Length = 156
Score = 29.2 bits (66), Expect = 5.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 678 QKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQV 737
+E +L L ++DK I DLK K KD EL+ K E+L QQ
Sbjct: 26 NEERDSLKKQLKNRDKQIEDLK------------------KKVKDNEELQKKIEKLKQQN 67
Query: 738 TKLEADCQSYLNTIK 752
+ + ++ L K
Sbjct: 68 KTAKEEYEAKLADTK 82
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 30.0 bits (68), Expect = 5.1
Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 38/227 (16%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFE------EQQTDWENNVKKL 433
E LL+ +E E K E R E+ + R+ EQ ++ + ++
Sbjct: 47 EIKELLDEEESEDEQLRAKYGERWTRPPSSELTAELREELRKYRGYLEQASESDAQLRSK 106
Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQEL 493
E+HEE+LE + ++E L+ + + SE + + K+ LK E
Sbjct: 107 LEEHEENLELLSGPEE-ELEALLPSSSPSKTPEVSEQISRLRELLN-----KLNELKAER 160
Query: 494 SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTEN 553
+L + K ++ +D+S L L + N+E QL
Sbjct: 161 EKLLEELKEKAQ-DDDISKLLIALNKLGSS----NEE------QLFE------------- 196
Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRS 600
EE+K L + ++ +Q +++++ E+ +ER+ + +
Sbjct: 197 --EELKKFDPLQERVEQNLSKQEELLKEIQEANEEFLQERKSDSEQK 241
Score = 29.2 bits (66), Expect = 8.9
Identities = 46/260 (17%), Positives = 100/260 (38%), Gaps = 56/260 (21%)
Query: 500 YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME------RGAQTEN 553
L EE G L++ + + L +K +E E + LS EE+E ++T
Sbjct: 79 TAELREELRKYRGYLEQASESDAQLRSKLEEHEENLELLSGPEEELEALLPSSSPSKTPE 138
Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
E++ L+ LL++ E E+ +E+L+ + + ++ L
Sbjct: 139 VSEQISRLRELLNKLNELKAEREKLLEELKEKAQD-----DDIS-------------KLL 180
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLK---ADLESNRAESNQS 670
IA+ G+ ++ + KF E+ +S++E L+ +++ + R ++
Sbjct: 181 IALNKLGSSNEEQLFEEELKKFDPLQERVEQNLSKQEELLKEIQEANEEFLQERKSDSEQ 240
Query: 671 AHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKC 730
E+ LQK ++N + L + + + K+Y
Sbjct: 241 KEREKVLQK-LENAYDKYKE-------LSSNLEEGLKFY--------------------- 271
Query: 731 EELTQQVTKLEADCQSYLNT 750
+L + + KL+ + ++N
Sbjct: 272 NDLLEILEKLQKKVKDFVNA 291
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 29.4 bits (66), Expect = 5.3
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 31/136 (22%)
Query: 480 AQHKLKIQNLKQE-------LSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
Q K +I+ L++E L ++ L EE D S + + EN
Sbjct: 42 EQRKQEIEELEKERIMNDRLLERVDKLLSELKEESLDSSQAVMKSLNEN----------- 90
Query: 533 GKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF--KEQTTEIEQLRSEVEKLS 590
++ +P + ++ L D+ K+E K IE+L+ +KL
Sbjct: 91 -----------FTDKENVEPEQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLK 139
Query: 591 EERRLLTVRSAELEYE 606
+E++ L + ELE E
Sbjct: 140 KEQKELLKKLDELEKE 155
>gnl|CDD|221270 pfam11855, DUF3375, Protein of unknown function (DUF3375). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 479 to 499 amino acids in
length.
Length = 471
Score = 30.4 bits (69), Expect = 5.3
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 19/80 (23%)
Query: 372 QGSHDDPYETIRLLEARL----AEFEGFDKKEFE----YQIREEYREVQ-------EDFR 416
+G+ DP + LE + AE + + + Q+RE +R++ DFR
Sbjct: 133 EGTEPDPEARLAELEREIDELDAEIDRLEAGDVPLLDDTQVRERFRQILDLARELPADFR 192
Query: 417 KMFEEQQTDWENNVKKLREQ 436
++ + ++ ++LRE+
Sbjct: 193 RV----EDNFRQLDRQLRER 208
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.4 bits (68), Expect = 5.5
Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 12/194 (6%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWEN-----NVKKLREQHEEDLERQRKFYKTQ 451
++E + + REE EV+E EQ+ DW + +K E EE+ ++ +
Sbjct: 112 EEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENN 171
Query: 452 IETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMS 511
E K + E+ + +EA + + KQ+ + LE L E +
Sbjct: 172 GE--FMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALE-----LEELKKKRE 224
Query: 512 GKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEE 571
+ K L E + + + + + + RR++E + E + K + L E K+
Sbjct: 225 ERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKKP 284
Query: 572 FKEQTTEIEQLRSE 585
FK T + L+
Sbjct: 285 FKCFTPKGSSLKIT 298
>gnl|CDD|226795 COG4345, COG4345, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 181
Score = 29.4 bits (66), Expect = 6.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 494 SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG 548
ELE K EE E + ++EL E L K KE+ + L R+++ G
Sbjct: 121 KELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQEHTG 175
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 30.0 bits (68), Expect = 6.1
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 16/139 (11%)
Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLER-QRKFYKTQIETLMTLVKN 461
++RE E+ ++ RK+ E+++ K + +E++++ + ++E L+ ++
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEI--DRLEELLDELEA 60
Query: 462 QQAEDDSEDETLNESAIEAQHKLKIQN-LKQELSELEAKYKSLSEEH---------EDMS 511
+ A E + + L+ L + K+LS E+ S
Sbjct: 61 KPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKALSTGTDSDGGYLVPEEFS 120
Query: 512 GKLKELTREN---RDLVTK 527
++ EL RE R L T
Sbjct: 121 TEIIELLREYSPLRQLATV 139
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.2 bits (69), Expect = 6.2
Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 54/232 (23%)
Query: 456 MTLVK-----NQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
+ LVK E D+E E L + +++ L+QEL +L+A+ ++ E +
Sbjct: 352 VALVKLCEQAAASPEYDTELEVLLQ---------RVEQLEQELKQLKAQPVGVAPEQK-- 400
Query: 511 SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKE 570
K KE + + + KV + E ++++ LK++ E E
Sbjct: 401 -EKKKEKKKNKKKKYKVPRGKIYKVLK--------------EATRQDLELLKNVWGEILE 445
Query: 571 EFKEQTTEIEQL--RSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKL 628
K Q + L SE SE+ + L + +Y I + + L
Sbjct: 446 SLKAQRKSLRALLVNSEPVAASED-------TVVLAF-----EYEIHFE-------KAML 486
Query: 629 DYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
D N E + +L+ + +++ + + + R E Q +E+ ++E
Sbjct: 487 DKELNDTIEN--ILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKNEEEEEEE 536
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 30.2 bits (68), Expect = 6.4
Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 527 KNKELEGKVAQLSRRVEE--MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRS 584
+ K+ +L + E K + + K E + + + E L
Sbjct: 239 AEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEV-AAWKAETRREAEQAEILAE 297
Query: 585 EVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYER 644
+ + + + V+ A+ E R LI + + E QE+ Y N Q + +
Sbjct: 298 QAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQER-SYFINAAQRQ---AQE 353
Query: 645 LMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
N+ + A E+ + ++ E+A Q +
Sbjct: 354 EAKAAANIAEAIGAQAEAAVETARETEEAERAEQAAL 390
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 30.1 bits (68), Expect = 6.5
Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 40/197 (20%)
Query: 532 EGKVAQLSRRVEEMERGAQTENKPEEV-KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLS 590
E + L+ E GA E K E S+ ++ E K+ +++ + L
Sbjct: 100 ELAIEGLAFGTERSTSGAVPETKDETPASAPSSIKEQKSSELKKVDSQL----PDPRALL 155
Query: 591 EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKE 650
+ L TV +AE E+E + + +++ + NK E +RL + K+
Sbjct: 156 KGEDLKTVETAE---EIE-KSLKAMQQK-----WKKRKKDLPNKQDLEEYK-KRLEAIKK 205
Query: 651 NLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYA 710
I +L+ + E ++ + +A +++IK+ + L +
Sbjct: 206 KDIKNPL-ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQN-------------------- 244
Query: 711 VMKEDRKTKEKDIAELK 727
D+K + D+AELK
Sbjct: 245 ----DKKQLKADLAELK 257
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 29.8 bits (67), Expect = 6.7
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 401 EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVK 460
E + E+ R+ + + E Q + N E E E +R ++ L L K
Sbjct: 37 ELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERL-----LDELEELEK 91
Query: 461 NQQ------AEDDSEDETLNESAIEAQHKLKIQNL-KQELSELEAKYKSLSEEHEDMSGK 513
E E E L E L+ NL + +LE +SL ++E +
Sbjct: 92 EDDDLDGELVELQEEKEQLEN---EELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQ 148
Query: 514 LKELTREN 521
L +L + N
Sbjct: 149 LDKLRKTN 156
Score = 29.5 bits (66), Expect = 8.3
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 17/129 (13%)
Query: 731 EELTQQVTKLEADCQSY---LNTIKNMENDERSTKHNQEKL--LKIYEDRLKAVQDELAE 785
E L ++ E + +Y L+ +++ + + + +L LK E+RL +EL E
Sbjct: 32 ERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEEL-E 90
Query: 786 MKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLK 845
+ L L +L+++ L+ E Q LQ + + +L+
Sbjct: 91 KEDDDLDGELV-----------ELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLE 139
Query: 846 AQMEKSQQQ 854
Q E S Q
Sbjct: 140 LQYEYSLNQ 148
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 30.1 bits (68), Expect = 6.8
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 513 KLKELTRENRDLVTKNKELEGK--VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKE 570
+L EL ++ R+L + ++LE + + + E R TE + K + L E +
Sbjct: 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQ 131
Query: 571 EFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
F +EIE+L +E + R L + +EL+ EL
Sbjct: 132 AFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 30.3 bits (69), Expect = 6.8
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 671 AHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKC 730
+++ L KEI +L LK K +++E K EK++ LK K
Sbjct: 710 LQEQEDLLKEIASL-------------LKVPPELLPKVERLLEE-LKELEKELERLKKK- 754
Query: 731 EELTQQVTKLEADCQ 745
++ L ++ +
Sbjct: 755 -LAAAELADLLSNAK 768
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 29.9 bits (67), Expect = 6.8
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 40/205 (19%)
Query: 496 LEAKYKSLSEEHEDMSG---KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTE 552
L+ K + L+E+ E + ++E +E+ L +N++L ++ RG +
Sbjct: 73 LQTKIRKLTEQDEGLRNIRESIEERQKESDQLKLQNQKLVNQLGHA--------RGVFIK 124
Query: 553 NKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ--- 609
K K L+ L KEE + L+ +++ L +E + EL EL +
Sbjct: 125 TKGRYQK-LEELSRHLKEENQ-------CLQIQLDALVQECNEKIEENQELNRELAETLA 176
Query: 610 -----RDYLIAVKTDGAEELQEKLDY---MENKFQEESLVYERLMSEKENLISQLKADLE 661
D A + L ++ Y +E K Q+ LM E NL+ QL++ ++
Sbjct: 177 YQQELNDEYQATFVEQHNMLDKRQAYIGKLEAKVQD-------LMCEIRNLL-QLESGIK 228
Query: 662 SN--RAESNQSAHDEQALQKEIKNL 684
N S L E+K +
Sbjct: 229 ENLPGKPVAASRDVVAQLVSELKKI 253
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 30.0 bits (68), Expect = 7.1
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 39/162 (24%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
L+Q+L+ + +S+ +MS LE ++ Q+S ++ E
Sbjct: 81 SAELRQQLNNERDEPRSVPP---NMS----------------TDALEQEILQVSSQLLEK 121
Query: 546 ERGAQTE-NKPEEVKYLKSLLDEAKEEFKEQTTEIEQ----LRSEVEKLSEERRLLTVRS 600
R AQ E ++ E+ S L + + E + Q EIE+ L + L++ + LT
Sbjct: 122 SRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQ--LTALQ 179
Query: 601 AEL--------EYELEQ-----RDYLIAVKTDGAEELQEKLD 629
AE E EL Q R L ++++ A++ ++LD
Sbjct: 180 AESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLD 221
>gnl|CDD|220180 pfam09325, Vps5, Vps5 C terminal like. Vps5 is a sorting nexin
that functions in membrane trafficking. This is the C
terminal dimerisation domain.
Length = 236
Score = 29.5 bits (67), Expect = 7.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLK-ELTR 519
K+Q K+E+ E E K + +E ED+S +K EL R
Sbjct: 164 KLQQAKKEVDEAERKVQQAKKEFEDISETIKKELER 199
>gnl|CDD|223048 PHA03333, PHA03333, putative ATPase subunit of terminase;
Provisional.
Length = 752
Score = 30.2 bits (68), Expect = 7.3
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 504 SEEHEDMSGKLKE-LTRENRD-LVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKY- 560
S+ E LT E R L+ +S E+ER A T+ P + K+
Sbjct: 40 SQAIEKDRVAAARKLTDELRAPLLRAMLIWGIGSDAISLMETELEREAATQRDPGKRKFR 99
Query: 561 -LKSLLD------EAKEEFKEQTTEIEQLRSEV 586
L ++D F+ + ++E LR V
Sbjct: 100 RLCLMIDCIFHLLRDHGGFRLEPFQLELLRGFV 132
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 29.6 bits (67), Expect = 7.4
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 481 QHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSR 540
+ +L + L E EL+ K + E + GKL L+ +VA+
Sbjct: 24 ELRLDLARLLLENEELKQKVEEALEGATNEDGKLA------------ADLLKLEVARKKE 71
Query: 541 RVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLS---EERRLLT 597
R+ ++ A+ EE++ + ++E K + Q RS++ S E+RR
Sbjct: 72 RLNQI--RARISQLKEEIEQKRERIEELKR-------ALAQRRSDLSSASYQLEKRR--A 120
Query: 598 VRSAELEYELEQRDYLIAVKTDGAEELQEKL 628
+ +L+ E+++ + E + L
Sbjct: 121 SQLEKLQDEIKRTRSKLNALHSLLAEKRSFL 151
>gnl|CDD|220078 pfam08939, DUF1917, Domain of unknown function (DUF1917). This
domain is found in various hypothetical and basophilic
leukaemia proteins. It has no known function.
Length = 237
Score = 29.4 bits (66), Expect = 7.6
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 405 REEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQA 464
R Y E EDF T W + D+ R + + E L+ +Q A
Sbjct: 50 RTPYNEPAEDFLARLPPSTTPWIYVANPYAPRPGPDIAR----FVREGEELLPSFTDQAA 105
Query: 465 EDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGK 513
++E+ +++A+E L E ELE L+ E +SGK
Sbjct: 106 WIEAENPGSSQAALER-------LLTPERKELEQDIFRLARETGVVSGK 147
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 30.0 bits (68), Expect = 7.7
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 441 LERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKY 500
LE + K + QI+ L + + + D E + ++ L++ELS L+ +
Sbjct: 166 LEERLKQLEEQIKKLEEKLDDLELNDTEE------------LQSDLEELEEELSVLKERL 213
Query: 501 KSLSEEHEDMSGKLKE 516
+ L + ED+ +
Sbjct: 214 EFLEKLLEDLERSEES 229
>gnl|CDD|214980 smart01024, BCS1_N, This domain is found at the N terminal of the
mitochondrial ATPase BSC1. It encodes the import and
intramitochondrial sorting for the protein.
Length = 170
Score = 29.1 bits (66), Expect = 7.7
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 357 IVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDK---KEFEYQIREEYREVQE 413
I M D GS P+ET+ L G D+ KE + RE + E
Sbjct: 93 IWVTREREKTMADMRTGS---PFETLTL------TTLGRDRDVFKELLEEARELALKRTE 143
Query: 414 DFRKMFEEQQTDWE 427
++ +W
Sbjct: 144 GKTVIYTADGPEWR 157
>gnl|CDD|237431 PRK13570, PRK13570, anthranilate synthase component I; Provisional.
Length = 455
Score = 29.9 bits (68), Expect = 7.8
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 447 FYKTQI------ETLMTLVKNQQAEDDSEDET---LNESAIEAQHKLKIQNLKQELSELE 497
Y++ I E L V + + D SE+E LN E + + ++ ELS+L
Sbjct: 129 LYESFIIYDHKKEKL-IFVYDNRYSDRSEEELEKALNVVLEELKQPAEAEHELIELSKLS 187
Query: 498 AKYKSLSEEHEDMSGKLKELTRE 520
K EE M K KE R
Sbjct: 188 FKSNITKEEFCGMVEKAKEYIRA 210
>gnl|CDD|221125 pfam11500, Cut12, Spindle-body formation-associated protein. This
is the central coiled-coil region of cut12 also found in
other fungi, barring S. cerevisiae. The full protein has
two predicted coiled-coil regions, and one consensus
phosphorylation site for p34cdc2 and two for MAP kinase.
During fission yeast mitosis, the duplicated spindle
pole bodies (SPBs) nucleate microtubule arrays that
interdigitate to form the mitotic spindle. Cut12 is
localised to the SPB throughout the cell cycle,
predominantly around the inner face of the interphase
SPB, adjacent to the nucleus. Cut12 associates with Fin1
and is important in this context for the activity of
Plo1.
Length = 149
Score = 28.9 bits (65), Expect = 7.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK 554
+YK L++ + K K+ E L K KE E KVA++ R V ++ E
Sbjct: 89 QYKQLAKSYA----KKKDA--EALRLAEKLKEEEAKVAEMERHVTQLASTMVAEVS 138
>gnl|CDD|218324 pfam04912, Dynamitin, Dynamitin. Dynamitin is a subunit of the
microtubule-dependent motor complex and in implicated in
cell adhesion by binding to macrophage-enriched
myristoylated alanine-rice C kinase substrate
(MacMARCKS).
Length = 376
Score = 29.7 bits (67), Expect = 7.9
Identities = 60/309 (19%), Positives = 128/309 (41%), Gaps = 34/309 (11%)
Query: 562 KSLLDEAKEEFKEQTTEIEQ---LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKT 618
+ + E F E+ T +++ L++E+ +L EE + + E + E L
Sbjct: 76 QGEYEILGEGFSEKETPVQKFQRLQTEMNELLEEIQAIQSDVKESKEEKISTVAL----A 131
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHD--EQA 676
E L+++L+ ++ + S + NL +L LE + +N+SA EQ
Sbjct: 132 GVVETLEKQLETLKLEQLLGSDTVIDSSDTQGNLSKKLLTQLEEFKKSTNKSASPDKEQT 191
Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKE--KDIAELKTKCEEL- 733
+ L L +K + L+A I + + D ++ + ++ + K L
Sbjct: 192 KLSQASKLAEL----EKRLHKLEAAIGNDPDKLSRLTADTESLPLLEAVSRISAKAALLD 247
Query: 734 TQQVTKLEADCQSYLNTIKNMENDERSTKHN---QEKLLKIYE---------DRLKAVQD 781
+ +E QS L +++++ + ++ + + K+ ++YE ++L V +
Sbjct: 248 PDHLDHIEQRLQSVLGKMESIDEKKAASLADANTESKISELYEIMKKWDPVVEQLPDVVE 307
Query: 782 ELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMI 841
L +K SL A+ SQ LE ++++ L N++ ++Q Q E I
Sbjct: 308 RLKTLK------SLHEQASHFSQSLAHLETTQQTIESSLASNKNLLEEVQESFKQNLETI 361
Query: 842 NNLKAQMEK 850
+ ++E
Sbjct: 362 KDNVTKLEA 370
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 29.7 bits (67), Expect = 8.0
Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 26/216 (12%)
Query: 592 ERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQE--KLDYMENKF-----QEESLVYER 644
+++LL + L+ + + D L +G + Y N F Q ESL E
Sbjct: 98 QKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGY-RNLFNGYLAQVESLTSET 156
Query: 645 LMSEKENLI-----SQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
++ + KA L+ ++++Q D QAL+ I N +
Sbjct: 157 QQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKV---------ANF 207
Query: 700 AKIH-KYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM--EN 756
YE Y A +K +K+ + T + QQ+ +L+ SY +
Sbjct: 208 NPYQSLYENYQAQLKSASDKDQKNQVKS-TILATIQQQIDQLQKSIASYQVQKAGLTKST 266
Query: 757 DERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK 792
KL ++ E +L V+ E+ ++ L+
Sbjct: 267 ASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLE 302
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 29.7 bits (67), Expect = 8.0
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 34/130 (26%)
Query: 629 DYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLL 688
+ +F LV E + +KE Q + +L+S R E N L KE+
Sbjct: 20 ESQRRRFASVELVDEVIALDKE--WRQRQFELDSLRKEFN-------KLNKEV------- 63
Query: 689 VDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYL 748
LK KED + ELK + E +V + +A + L
Sbjct: 64 -------AKLKIA-----------KEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105
Query: 749 NTIKNMENDE 758
TI N+ +D
Sbjct: 106 KTIGNLVHDS 115
>gnl|CDD|221397 pfam12054, DUF3535, Domain of unknown function (DUF3535). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 439 to 459 amino acids in length. This domain is
found associated with pfam00271, pfam02985, pfam00176.
This domain has two completely conserved residues (P and
K) that may be functionally important.
Length = 442
Score = 29.6 bits (67), Expect = 8.2
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 30/117 (25%)
Query: 732 ELTQQVTKLEADCQSYLNTIKNMENDERSTKH--------------------NQEKLLKI 771
EL + +L CQ LNT ++ +S EK++
Sbjct: 187 ELVPSLKRLRTQCQQLLNTFVDVGKLSQSKLPSLAVVVQGEPEAGPEAFSIETAEKVVTT 246
Query: 772 YEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVR 828
D+LK ++ +LE + R++L + K E+RH +
Sbjct: 247 DFDKLKKSLSPKQKL---TALQALEDA-------RRRLLAAIEEAKEAKEKRHIRIL 293
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 29.7 bits (67), Expect = 8.3
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 663 NRAESNQSAHDEQALQKEIKNLGSLLVDK-DKTIGDLKAKI--HKYEKYYAVMKEDRK-T 718
AE N + E+ + ++KN L + +K + +LK KI K EK ++K+ R+
Sbjct: 512 KEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQAL 571
Query: 719 KEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDE 758
+ + +K+ EEL + + ++ + S +T ND+
Sbjct: 572 QNDNYESIKSLLEELQKALMEIGKEVYSSTSTTDPASNDD 611
>gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 875
Score = 29.7 bits (67), Expect = 8.3
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 535 VAQLSRRVEEMERGA-QTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE- 592
VA+L R + E+ G + E V+ LK D + E + E+ LR + + EE
Sbjct: 600 VAELQRDIAELLHGDDRVMVLDEVVRRLKDWQDLHAADGVELSEEVSGLREKFKPDDEEV 659
Query: 593 RRLLTVRSAELEYELE 608
R + L+Y L
Sbjct: 660 FRKFDLFILRLQYLLL 675
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 29.5 bits (66), Expect = 8.4
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 524 LVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLR 583
L + L V+ +S R+ ++ Q + + LD+AK T ++ L+
Sbjct: 40 LESATASLSESVSTISSRLSDLSADLQD---------MTTSLDDAKATLNGLITTVQALQ 90
Query: 584 SEVEKLSEERRLLT 597
+ V+ LS E L+
Sbjct: 91 TSVDSLSSELADLS 104
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 29.7 bits (68), Expect = 8.4
Identities = 37/182 (20%), Positives = 81/182 (44%), Gaps = 33/182 (18%)
Query: 410 EVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKF-YKTQIET--LMTLVKNQQAED 466
E+ ++F K E +T +++L+ ++LER++K + +++ L LV+N + +
Sbjct: 247 ELDDEFAKKLGEFET-----LEELKADIRKNLEREKKEAQRAKVKEAVLDALVENAEID- 300
Query: 467 DSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTREN----- 521
L E+ +E + ++ Q+ +LE ++ + E+ + +E RE
Sbjct: 301 ------LPEALVEQEIDRLLRQALQQGLDLEGQFLEDTGTTEE---EPREEFREQAERRV 351
Query: 522 -RDLVT----KNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKS---LLDEAKEEFK 573
L+ K +E+E ++ +EEM Q PE +++ LL + +
Sbjct: 352 KLGLLLDEIAKAEEIEVSDEEVKAEIEEMAS--QYGQPPEVIEFYLKNPQLLAALRADVL 409
Query: 574 EQ 575
E+
Sbjct: 410 EE 411
>gnl|CDD|191973 pfam08232, Striatin, Striatin family. Striatin is an intracellular
protein which has a caveolin-binding motif, a
coiled-coil structure, a calmodulin-binding site, and a
WD (pfam00400) repeat domain. It acts as a scaffold
protein and is involved in signalling pathways.
Length = 133
Score = 28.5 bits (64), Expect = 8.5
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
+K +++LE + + L ED+ ++K L + K K+L+ + +E E
Sbjct: 28 AEMKARIAQLEGERRGLENLKEDLKRRIKMLEYALKQERAKLKKLKYGTDSPQKPSKEEE 87
Query: 547 RGAQTENKPEEVKYLKSLLDEAKE 570
E+ EE K E K+
Sbjct: 88 EEELEEDDDEESNSEKVDESELKK 111
>gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit,
Gram-positive. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 738
Score = 29.8 bits (67), Expect = 8.5
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 617 KTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQA 676
K+D E L + + EN Q E++V RL I +LK ++
Sbjct: 395 KSDAKENLIDNFKFTEN--QAEAIVSLRLYRLTNTDIFELK--------------EEQNE 438
Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK-EKDIAELKTKCEEL 733
L+K+I +L ++ + LK ++ +Y+K +A + R+++ E I ++K EL
Sbjct: 439 LEKKIISLEQIIASEKARNKLLKKQLEEYKKQFA---QQRRSQIEDFINQIKINESEL 493
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 29.8 bits (68), Expect = 8.6
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 540 RRVEEMER---------GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLS 590
++E+E G E P+ V+ EE+KEQ EIE+LR E+ +L
Sbjct: 736 EYIQELEDLLKEAAEILGVPPEQLPKTVERFF-------EEWKEQKKEIEKLRKELAELL 788
Query: 591 EERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
L E+ ++ +EL++ +
Sbjct: 789 ASELLSKAE------EVGGVKVVVEEVDADEDELRKIAN 821
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.5 bits (67), Expect = 8.6
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 7/127 (5%)
Query: 470 DETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNK 529
DE + K + + + L+A + L+ K
Sbjct: 52 DEDETPKKNPVLREEK-RKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEK 110
Query: 530 ELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
E K + E + + +E+K LK+LL E+ ++E++ E +L
Sbjct: 111 PSEPKEEEPKAAAESKVVQKELDELRDELKELKNLL----EDQLSGLRQVERIPPEFAEL 166
Query: 590 SEERRLL 596
+RL
Sbjct: 167 --YKRLK 171
>gnl|CDD|226055 COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope
biogenesis, outer membrane].
Length = 372
Score = 29.4 bits (66), Expect = 8.7
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHN 825
E+ ++ E+R+K ++L + + +A A +LED++ ++A+L+ +
Sbjct: 185 EEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKS 244
Query: 826 VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLEN 867
V+ + I LKA++E ++Q Q++ + +
Sbjct: 245 VMNP-------ENPQIPGLKARIESLRKQLLQEKQAISAGGS 279
>gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional.
Length = 167
Score = 28.8 bits (64), Expect = 8.7
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDG---A 621
LD + + + E ++LR E + L L V++ E E + L A K D
Sbjct: 39 LDAYAAKIQAELDEAQRLREEAQAL-----LADVKAEREEAERQAAAMLAAAKADARRME 93
Query: 622 EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAH-DEQALQKE 680
E +EKL EE + M+E++ ++ +A + A + +A E L
Sbjct: 94 AEAKEKL--------EEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAAR 145
Query: 681 IKNLGS-LLVDKDKTIGDLKAKI 702
+ S LV D IG + AK+
Sbjct: 146 LAGAKSDPLV--DAAIGQMGAKL 166
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 29.8 bits (68), Expect = 8.8
Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 45/198 (22%)
Query: 378 PYETIRLLEARLAE-FEGFDKKEFEYQIREEYREVQED-------------------FRK 417
P E +L + +L + F + + I E E+ F+
Sbjct: 53 PIEDFKLFKEKLKQSFSHIADIKVTFSIEVENITFTEELLLDYWNEIIEKAKKNSPLFKS 112
Query: 418 MFEEQQTDWENNVKKLREQHEEDLERQRK--------------FYKTQIETL----MTLV 459
+ ++Q+ + E N ++ +E + + +K F +I+ +
Sbjct: 113 LLKKQKVEVEGNKLIIKVNNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEEL 172
Query: 460 KNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLS--EEHEDMSGKLKEL 517
+ +A+ + EDE L + A+EA KL+ + KQ + + + ++ +KE+
Sbjct: 173 EKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEI 232
Query: 518 TRENRDLVTKNKELEGKV 535
E R +V +EG V
Sbjct: 233 NEEERRVV-----VEGYV 245
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 29.6 bits (67), Expect = 8.9
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 361 ERASGEMTDYFQGSHDDPYET-IRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMF 419
E+ E + D E + RL E E +++ E ++ E + E+ K+
Sbjct: 173 EKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGD--EEAIKL- 229
Query: 420 EEQQTDWENNVKKLREQHEEDLER 443
W+ V+ E +E L R
Sbjct: 230 ------WKRLVEYSLEGIKETLAR 247
>gnl|CDD|219174 pfam06780, Erp_C, Erp protein C-terminus. This family represents
the C-terminus of bacterial Erp proteins that seem to be
specific to Borrelia burgdorferi (a causative agent of
Lyme disease). Borrelia Erp proteins are particularly
heterogeneous, which might enable them to interact with
a wide variety of host components.
Length = 141
Score = 28.6 bits (64), Expect = 9.1
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 659 DLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKT 718
D + S S ++E LG LL + + L+ K+++ K Y E +
Sbjct: 40 DFTDGNSNSIYSTWGGDLEEEEDSGLGKLLKELEDARDSLRTKLNEGNKPYTKDNEPKLK 99
Query: 719 KEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755
+ ++E+K E+L ++ ++ + YL N E
Sbjct: 100 ENVKVSEIKEDLEKLKSKLEEV----KEYLEDKDNFE 132
>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904). This
family consists of several bacterial and archaeal
hypothetical proteins of unknown function.
Length = 72
Score = 27.3 bits (61), Expect = 9.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 491 QELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQL 538
+ L ELE+K + E + +++EL EN L +N+ELE + +L
Sbjct: 4 ELLEELESKIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKL 51
>gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
Length = 623
Score = 29.6 bits (67), Expect = 9.7
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 551 TENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
+E+KPE VK L + D+ E K Q E +Q + + EKL
Sbjct: 471 SEHKPEAVKPLAQVRDQVTELVKRQKAE-QQAKVDAEKL 508
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 28.2 bits (63), Expect = 9.8
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKYLKS 563
++ + KLKE RE L K + LE +L E E + EN EV+ LK+
Sbjct: 3 KKQLHVLEKLKESEREADLLKDKVENLE---RELEMSEENQELVILEAENSKAEVETLKT 59
Query: 564 LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
++E E K+ ++ +RSE E L++ +L+ + E+ L + +
Sbjct: 60 KIEEMAESLKDLELDLVTVRSEKENLTK----------QLQEKQERVSELEKLNSSTENL 109
Query: 624 LQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE 661
L+EK QE+ + E + E L +QLK E
Sbjct: 110 LEEKE-------QEKIQMKEESKTAVEMLQTQLKELNE 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.345
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,995,428
Number of extensions: 4598337
Number of successful extensions: 10588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7892
Number of HSP's successfully gapped: 1403
Length of query: 932
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 826
Effective length of database: 6,236,078
Effective search space: 5151000428
Effective search space used: 5151000428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.4 bits)