RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16994
(932 letters)
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 154 bits (392), Expect = 2e-41
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 6/167 (3%)
Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
KT TI ++T + S E +L+ S A T N SS SH +F I L + +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232
Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
+ ++ DLAG+ER + GDRLRE + IN SL L + L + +
Sbjct: 233 GA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----T 287
Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++ ET+ L+
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLR 333
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
++F I+ T ++F+ + +++ L+G + +F++G T SGKTFT+
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 152 bits (387), Expect = 6e-41
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+ + LT V S ++ +V FG ++ + T LN SSRSH + + + VD
Sbjct: 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC 220
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
+ ++ DLAG+ER ++ G RLREA+ IN SL L L
Sbjct: 221 STGL-RTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-------R 272
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
++ +PFR+SKLT + Q SLSG S T+ M+V V+ ET+ LK
Sbjct: 273 SRQGHVPFRNSKLTYLLQDSLSGDSKTL-MVVQVSPVEKNTSETLYSLK 320
Score = 39.8 bits (94), Expect = 0.003
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 105 YRFSNIYGPHTTQAELF---QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ ++ P +Q ++F Q +V + ++ + N +F++G T +GKT+T++
Sbjct: 50 FELDKVFSPQASQQDVFQEVQALVTSCIDGF-NVC---IFAYGQTGAGKTYTME 99
Score = 33.7 bits (78), Expect = 0.25
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 4 EGTIEQPGIIPRTLNILFNSL 24
EGT E PGI R L +LF+ +
Sbjct: 99 EGTAENPGINQRALQLLFSEV 119
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 150 bits (382), Expect = 1e-39
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Query: 149 GKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGS 208
KT TI ++T V + S E +L+ S A T N SSRSH +F I L + +
Sbjct: 229 TKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 288
Query: 209 EELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 268
+ ++ DLAG+ER + GDRLRE + IN SL L + L + +
Sbjct: 289 GA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS----T 343
Query: 269 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++ ET+ L+
Sbjct: 344 KRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLR 389
Score = 39.2 bits (92), Expect = 0.006
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
++F I+ T ++F+ + +++ L+G + +F++G T SGKTFT+
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTML 159
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 149 bits (379), Expect = 2e-39
Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 9/169 (5%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+S +++++T V++ + EE +++ G T +N +SSRSH + S+ + +
Sbjct: 160 DSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL 219
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
++ I DLAG+ER K++ ++G++L+EA++IN SL L + L +
Sbjct: 220 QTQA-IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL-------S 271
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
+ IP+R+ KLT + SL G + T+ M VN++ + + +ET L
Sbjct: 272 SGNQHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHNSLT 319
Score = 39.5 bits (93), Expect = 0.004
Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ + ++ + TQ ++F++ + +++ ++G + +F++G T SGKTFTI
Sbjct: 49 HMYDRVFDGNATQDDVFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98
Score = 31.8 bits (73), Expect = 0.94
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML 46
G PG+ PR ++ LF + +K + M+
Sbjct: 98 YGADSNPGLTPRAMSELFRIMKKDSNKFSFSLK------AYMV 134
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 148 bits (375), Expect = 4e-39
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+ + I ++T + + S + +L+ S A T N RSSRSH VF + + +
Sbjct: 174 HEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
+ E ++ DLAG+ER + +G+RLRE + IN SL L L +
Sbjct: 234 HTGE-TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA--- 289
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
K+ IPFR+SKLT + Q SL G S T+ M VN+ P + ET+ L+
Sbjct: 290 -GKRYIPFRNSKLTYLLQYSLVGDSKTL-MFVNIPPDPNHISETLNSLR 336
Score = 39.9 bits (94), Expect = 0.003
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
++F I+ P T E+F+ I +++ L+G + +F++G T SGKT+T+
Sbjct: 55 FQFDMIFEPSHTNKEIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTYTML 104
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 147 bits (372), Expect = 2e-38
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
I L+ + S + R + +V T LN RSSRSH V +K+ + + +
Sbjct: 186 IPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQR 245
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
+ DLAG+E +R G RL+E+ IN+SL VL + + L +P
Sbjct: 246 EGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL-------NQGLPRVP 298
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
+RDSKLT++ Q SL G + ++ +I N+ + +TV L
Sbjct: 299 YRDSKLTRLLQDSLGGSAHSI-LIANIAPERRFYLDTVSALN 339
Score = 53.0 bits (128), Expect = 2e-07
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
+ +D S+ ++ + ++ Y+F YG +TQ +++ V +L L
Sbjct: 42 PPCVRGMDSCSLEIANWRNHQETLK-----YQFDAFYGERSTQQDIYAGSVQPILRHLLE 96
Query: 135 GEDALLFSFGTTNSGKTFTIQ 155
G++A + ++G T +GKT T+
Sbjct: 97 GQNASVLAYGPTGAGKTHTML 117
Score = 32.6 bits (75), Expect = 0.56
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 4 EGTIEQPGIIPRTLNILFNSL 24
G+ EQPG+IPR L L
Sbjct: 117 LGSPEQPGVIPRALMDLLQLT 137
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 145 bits (369), Expect = 3e-38
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 14/173 (8%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLV--KV 204
+ + I+ L + VH+ +E Y++L G + + A T +N SSRSH VFS+ + +
Sbjct: 180 RNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239
Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
EEL+ + ++ DLAG+E R+ R REA IN SL L R L
Sbjct: 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL------ 293
Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
++ +P+R+SKLT+I Q SL G + T +I + SPA EET+ L+
Sbjct: 294 -VERTPHVPYRESKLTRILQDSLGGRTRTS-IIATI--SPASLNLEETLSTLE 342
Score = 48.7 bits (117), Expect = 5e-06
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++G T Q ++++++V +L+ + G + +F++G T +GKTFT++
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 145 bits (367), Expect = 4e-38
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 11/173 (6%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKV 204
++ K + LT S EE +L G + + PT++N SSRSH VF I L
Sbjct: 182 DTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK 241
Query: 205 DPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 264
+ + ++ + DLAG+ER + G R E IN SL L N L ++
Sbjct: 242 TASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR- 300
Query: 265 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
K + IP+R+SKLT++ + SL G T+ MI V SP+ ++T LK
Sbjct: 301 ---KNQHIPYRNSKLTRLLKDSLGGNCQTI-MIAAV--SPSSVFYDDTYNTLK 347
Score = 49.2 bits (118), Expect = 3e-06
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYR-------------FSNIYGPHTTQAELF 121
V+ V+D+ ++F P ++ + F ++ +TQ+E+F
Sbjct: 31 HKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVF 90
Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
++ +L +LNG + + ++G T +GKT T+
Sbjct: 91 EHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124
Score = 32.2 bits (74), Expect = 0.76
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTY 39
G+ ++PG++ T+ L+ + ++ +Y
Sbjct: 124 LGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSY 159
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 144 bits (366), Expect = 6e-38
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELI 212
I+ L+ E+A+ +L G+++ +A +N SSRSHC+F+I L SEE
Sbjct: 195 IKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKY 254
Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
+ S ++ DLAG+ER ++ + G L+EA IN SL L + L + K+ I
Sbjct: 255 ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ------KRDHI 308
Query: 273 PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
PFR KLT + SL G + V ++ N+ A EET+ L+
Sbjct: 309 PFRQCKLTHALKDSLGGNCNMV-LVTNIYGEAAQLEETLSSLR 350
Score = 43.0 bits (102), Expect = 3e-04
Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 82 DQKSIMFKPMKDMKCSITDTCNL---YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDA 138
D++SI KD++ + + ++ + +Q +++ + +++ + L+G +
Sbjct: 47 DKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD-ASQDLVYETVAKDVVSQALDGYNG 105
Query: 139 LLFSFGTTNSGKTFTIQ 155
+ +G T +GKT+T+
Sbjct: 106 TIMCYGQTGAGKTYTMM 122
Score = 30.3 bits (69), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1 MGAEGTIEQPGIIPRTLNILFNSL 24
MGA + GI+PR L +F +
Sbjct: 122 MGATENYKHRGILPRALQQVFRMI 145
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 143 bits (364), Expect = 6e-38
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
++ T V S +E + GKS+ VA T +N SSRSH +F I + + + +E+ +
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQ-KL 223
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
+ DLAG+E+ + G L EA+ IN SL L + L A+ +P
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVP 276
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
+RDSK+T+I Q SL G T +++ + S ET L
Sbjct: 277 YRDSKMTRILQDSLGGNCRTT-IVICCSPSSYNESETKSTLL 317
Score = 48.3 bits (116), Expect = 6e-06
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++ T+Q +++ + +++ L G + +F++G T+SGKT T++
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Score = 28.7 bits (65), Expect = 8.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 1 MGAEGTIEQPGIIPRTLNILFNSL 24
G E GIIPR + +FN +
Sbjct: 96 EGKLHDPEGMGIIPRIVQDIFNYI 119
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 145 bits (367), Expect = 7e-38
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
+ T+ + YV V +E +L + + +VA T N RSSRSH VF +++
Sbjct: 205 PGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHS 264
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENN 262
+ + DLAG+ER G +RLRE + INSSL L L
Sbjct: 265 SRGL-QCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL---- 319
Query: 263 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
++K+ +P+R+SKLT + Q SL G + + M VN++ E++ L+
Sbjct: 320 ---SNKESHVPYRNSKLTYLLQNSLGGSAKML-MFVNISPLEENVSESLNSLR 368
Score = 39.2 bits (92), Expect = 0.005
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F ++ P + Q E+F+ I +++ L+G +F++G T SGKTFT++
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTME 134
Score = 28.8 bits (65), Expect = 9.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML 46
G + G+IPR L LF+ + TY+ S +
Sbjct: 138 GGDPQLEGLIPRALRHLFSVAQELSGQG-----WTYSFVASYV 175
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 143 bits (362), Expect = 2e-37
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-------VKVD 205
+ + V+V +E +L G + T LNH SSRSH VF++ L ++
Sbjct: 174 VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLP 233
Query: 206 PGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 265
+ +++S F DLAG+ER + ++G+RL+E+ INSSL L + L +
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR-- 291
Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
+ IP+RDSK+T+I + SL G + TV MI V SP+ +ET+ L
Sbjct: 292 --RGSHIPYRDSKITRILKDSLGGNAKTV-MIACV--SPSSSDFDETLNTLN 338
Score = 48.7 bits (117), Expect = 5e-06
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F + Q ++Q V +LE + G +A +F++G T SGKT+T+
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 142 bits (360), Expect = 4e-37
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL-VKVDPGSEELI 212
+ L+ V + E ++ G ++ VA T++N SSRSH +F +++ ++E+I
Sbjct: 173 VDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI 232
Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
+ ++ DLAG+ERQ + +G+ L E IN SL L + L + I
Sbjct: 233 RVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL-------VEGATHI 285
Query: 273 PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
P+RDSKLT++ Q SL G S T+ M N+ SPA +ET+ L+
Sbjct: 286 PYRDSKLTRLLQDSLGGNSKTL-MCANI--SPASTNYDETMSTLR 327
Score = 48.8 bits (117), Expect = 5e-06
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 74 FENVLEVLDQK-SIMFKPMKDMKCSITDTCNLYRFS--NIYGPHTTQAELFQNIVHNMLE 130
N++ + + ++ P + K + F+ +Y + +FQ +++
Sbjct: 24 ALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLID 83
Query: 131 RYLNGEDALLFSFGTTNSGKTFTIQ 155
L G ++ +F++G T +GKT+T+
Sbjct: 84 AVLEGFNSTIFAYGQTGAGKTWTMG 108
Score = 31.8 bits (73), Expect = 0.90
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 4 EGTIEQPGIIPRTLNILFNSL 24
G E+PG IP + LF+++
Sbjct: 108 GGNKEEPGAIPNSFKHLFDAI 128
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 141 bits (358), Expect = 1e-36
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 15/168 (8%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKVDPGSEE 210
IQ L + VHS ++ Y++L GK A T +N +SSRSH VFSI + + E+
Sbjct: 196 IIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED 255
Query: 211 LIMMSSFDICDLAGAERQKRA-HTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
++ + ++ DLAG+E +A + G R+RE IN SL L R L D+
Sbjct: 256 MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL-------VDRA 308
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
+P+R+SKLT++ Q SL G + T +I + SP EET+ L+
Sbjct: 309 PHVPYRESKLTRLLQESLGGRTKTS-IIATI--SPGHKDIEETLSTLE 353
Score = 49.2 bits (118), Expect = 4e-06
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F +GP + Q +++ +V ++E LNG + +F++G T +GKT T+
Sbjct: 69 FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 140 bits (354), Expect = 2e-36
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 140 LFSFGTTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI 199
L Q T + +HS + + +L G + V PT +N SSRSH + +I
Sbjct: 167 LLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTI 226
Query: 200 KLVKVDPGSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLR 259
+ + S +I DLAG+E +R G +E IN L + + +
Sbjct: 227 HV-------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM- 278
Query: 260 ENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
A +IP+RDS LT + Q SL+ S + + SP ET+ L+
Sbjct: 279 ------AAGHTVIPYRDSVLTTVLQASLTAQSYLT-FLACI--SPHQCDLSETLSTLR 327
Score = 49.1 bits (118), Expect = 4e-06
Identities = 14/80 (17%), Positives = 37/80 (46%)
Query: 76 NVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLNG 135
+ S++ P S+ N + F + + +Q E++Q ++ ++++ L G
Sbjct: 34 RQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93
Query: 136 EDALLFSFGTTNSGKTFTIQ 155
++G T +GK++++
Sbjct: 94 FQCTALAYGQTGTGKSYSMG 113
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 141 bits (358), Expect = 2e-36
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%)
Query: 147 NSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDP 206
N+ + ++T V ++ K + + A T N RSSRSH V ++L+
Sbjct: 219 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 278
Query: 207 GSEELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 266
+E I + S ++ DLAG+E K + R+ E + IN SL L L
Sbjct: 279 EKQE-ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILAL-------L 326
Query: 267 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
K+ IP+R+SKLT + SL G S T+ M +NV+ +E+V+ L+
Sbjct: 327 QKQDHIPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVKSLR 374
Score = 38.4 bits (90), Expect = 0.011
Identities = 14/51 (27%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F ++ P ++Q+++F+ + +++ L+G + +F++G T SGKT+T+
Sbjct: 108 FSFDQVFHPLSSQSDIFEMVSP-LIQSALDGYNICIFAYGQTGSGKTYTMD 157
Score = 33.4 bits (77), Expect = 0.36
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKV 535
++ +L+Q EL + + E E +L + E ++L +L +
Sbjct: 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61
Score = 32.6 bits (75), Expect = 0.54
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML 46
+G E G+IPRT+++LF+S+ Y + Y + L
Sbjct: 157 DGVPESVGVIPRTVDLLFDSIRGYRNLGW-----EYEIKATFL 194
Score = 29.9 bits (68), Expect = 4.0
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 496 LEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER 547
+ + + +LS E + + +EL R N + + + ++ Q MER
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-----SNMER 47
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 139 bits (353), Expect = 4e-36
Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKVDPGSEEL 211
++DL+ S +E V+ G + SV T +N SSRSH +F I + +V E
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248
Query: 212 IMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 271
I + ++ DLAG+ERQ + G+RL+EA IN SL L + L + K
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------KSTH 302
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
IP+RDSKLT++ Q SL G + TV M+ NV PA EET+ L+
Sbjct: 303 IPYRDSKLTRLLQDSLGGNAKTV-MVANV--GPASYNVEETLTTLR 345
Score = 47.2 bits (113), Expect = 2e-05
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F +Y + Q EL+ +++ L G + +F++G T +GKT+T++
Sbjct: 70 FTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120
Score = 30.2 bits (69), Expect = 3.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 1 MGAEGTIEQPGIIPRTLNILFNSL 24
G G E+ G+IP + + +F +
Sbjct: 120 EGIRGDPEKRGVIPNSFDHIFTHI 143
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 138 bits (350), Expect = 7e-36
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSI----KLVKVDPGSE 209
+ DLT V++ E A + + G+ T++N RSSRSH +F + + E
Sbjct: 163 VADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE 222
Query: 210 ELIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 269
+ +S ++ DLAG+ER + +G RL+E IN SL +L + L +
Sbjct: 223 GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ-----VG 277
Query: 270 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
I +RDSKLT+I Q SL G + T +I + +P +ET+ L+
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTR-IICTI--TPVSFDETLTALQ 320
Score = 47.2 bits (113), Expect = 2e-05
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ F ++ + T +++ I +++ + G + +F++G T SGKT+T+
Sbjct: 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96
Score = 29.1 bits (66), Expect = 6.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 4 EGTIEQPGIIPRTLNILFNS 23
G+ + G+IPR ++ +F
Sbjct: 96 MGSEDHLGVIPRAIHDIFQK 115
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 138 bits (350), Expect = 8e-36
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL---VKVDPGSEE 210
+ L+ + V S ++ ++ G +VA T +N SSRSH VF I L +
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKK 270
+ + DLAG+ER + +GDRL+E IN SL L + L + + K K K
Sbjct: 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKN-KNK 298
Query: 271 LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA---YAEETVQVLK 315
+P+RDS LT + + SL G S T M+ V SPA Y +ET+ L+
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTA-MVATV--SPAADNY-DETLSTLR 342
Score = 39.9 bits (94), Expect = 0.003
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 113 PHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
+ Q +F+ + N+L+ +G +A +F++G T SGK++T+
Sbjct: 69 KYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111
Score = 31.0 bits (71), Expect = 1.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 4 EGTIEQPGIIPRTLNILFNS 23
GT +QPG+IPR + LF
Sbjct: 111 MGTADQPGLIPRLCSGLFER 130
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 136 bits (345), Expect = 4e-35
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
++ T V S E+ + V+ GKS+ +A T +N SSRSH VF I + + + +++ +
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQK-KL 230
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
+ DLAG+E+ + G L EA+ IN SL L + L + K IP
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG------NKTHIP 284
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
+RDSKLT+I Q SL G + T +++ SPA ET L
Sbjct: 285 YRDSKLTRILQESLGGNARTT-IVICC--SPASFNESETKSTLD 325
Score = 47.6 bits (114), Expect = 1e-05
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
Y F ++ P+ +Q +++ +++ L G + +F++G T+SGKT T++
Sbjct: 53 YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103
Score = 29.1 bits (66), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 1 MGAEGTIEQPGIIPRTLNILFNSL 24
G G + GIIPR +N +FN +
Sbjct: 103 EGVIGDSVKQGIIPRIVNDIFNHI 126
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 135 bits (342), Expect = 1e-34
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL--VKVDPGS-EE 210
++DL+ + V S + ++ G +VA T +N SSRSH VF+I + D +
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 237
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL-----RENNGLK 265
+S + DLAG+ER G RL+E IN SL L + + L N K
Sbjct: 238 TEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKK 297
Query: 266 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
K IP+RDS LT + + +L G S T M+ + SPA +ET+ L+
Sbjct: 298 KKKTDFIPYRDSVLTWLLRENLGGNSRTA-MVAAL--SPADINYDETLSTLR 346
Score = 39.5 bits (93), Expect = 0.004
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 107 FSNIYGPHT--------TQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
F Y HT +Q +++++I ML+ G + +F++G T +GK++T+
Sbjct: 52 FDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 134 bits (340), Expect = 2e-34
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
++ L + V S +E Y V+R G + +VA T +N SSRSH +F I + + + +
Sbjct: 169 VKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGS-AK 227
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 273
+ DLAG+E+ + SG L EA+ IN SL L N L + K +P
Sbjct: 228 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KSSHVP 281
Query: 274 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETVQVLK 315
+RDSKLT+I Q SL G S T +I+N SP+ ET+ L+
Sbjct: 282 YRDSKLTRILQESLGGNSRTT-LIINC--SPSSYNDAETLSTLR 322
Score = 49.1 bits (118), Expect = 3e-06
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELFQNIVHNMLERYLN 134
+ ++ + + + F ++ Q+++F + ++ LN
Sbjct: 27 QPIVTFQGPDTCTVDSKEAQGS--------FTFDRVFDMSCKQSDIFDFSIKPTVDDILN 78
Query: 135 GEDALLFSFGTTNSGKTFTIQ 155
G + +F++G T +GK++T+
Sbjct: 79 GYNGTVFAYGQTGAGKSYTMM 99
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 133 bits (337), Expect = 4e-34
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
++DL + V + EE + G + N SSRSH + +I L +
Sbjct: 172 VVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD----INKNT 227
Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKL 271
+ DLAG+ER + + + + IN SL L C + K
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-------DSDKNH 280
Query: 272 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
IPFRDS+LT++ + G S ++ MI N+ SP + E+T+ L+
Sbjct: 281 IPFRDSELTKVLRDIFVGKSKSI-MIANI--SPTISCCEQTLNTLR 323
Score = 46.9 bits (112), Expect = 2e-05
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCN--LYRFSNIYGPHTTQAELFQNIVHNMLERY 132
+++ V + ++ + K +T + ++ +++N + ++
Sbjct: 21 SDIITVKNNCTLYIDEPRY-KVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79
Query: 133 L-NGEDALLFSFGTTNSGKTFTIQ 155
NG F++G T SGKT+T+
Sbjct: 80 YENGCVCSCFAYGQTGSGKTYTML 103
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 135 bits (342), Expect = 5e-34
Identities = 61/180 (33%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKL---VKVDPGSEE 210
++DLT V V EE R +R G +VA T++N SSRSH VF+I L +
Sbjct: 229 VKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDT 288
Query: 211 LIMMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL------------ 258
S + DLAG+ER K +G RLRE IN SL L R L
Sbjct: 289 TERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSS 348
Query: 259 ---RENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
++P+RDS LT + + SL G S T MI + SP +ET+ L+
Sbjct: 349 PVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA-MIACI--SPTDYDETLSTLR 405
Score = 38.1 bits (89), Expect = 0.011
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 107 FSNIYGPH-------TTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQ 155
F + H TQ ++ ++ L+ G +F++G T SGK++T+
Sbjct: 100 FDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Score = 30.4 bits (69), Expect = 2.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 4 EGTIEQPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSML 46
GT +QPG+IPRT LF + D++ + +Y VS
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNI---SYNVKVSYF 194
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 124 bits (313), Expect = 1e-30
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 154 IQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIM 213
+ L V+S ++ +++ G + + T N SSRSH F I L M
Sbjct: 225 VVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG------RM 278
Query: 214 MSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLI 272
F + DLAG ER ++ + R E IN SL L C L K
Sbjct: 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAHT 331
Query: 273 PFRDSKLTQIFQRS-LSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
PFR+SKLTQ+ + S + S T MI + SP + E T+ L+
Sbjct: 332 PFRESKLTQVLRDSFIGENSRTC-MIATI--SPGISSCEYTLNTLR 374
Score = 49.5 bits (119), Expect = 3e-06
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCNL-YRFSNIYGPHTTQAELFQNIVHNMLERYL 133
+V+ + + ++ K N + F + + +++ +++
Sbjct: 72 IDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 131
Query: 134 NGEDALLFSFGTTNSGKTFTIQ 155
G A F++G T SGKT T+
Sbjct: 132 EGGKATCFAYGQTGSGKTHTMG 153
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 121 bits (307), Expect = 9e-30
Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 20/167 (11%)
Query: 153 TIQDLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELI 212
+ L V ++ +++ G + + T N SSRSH F I L
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG------R 297
Query: 213 MMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKL 271
+ F + DLAG ER ++ + R E IN SL L C L K
Sbjct: 298 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAH 350
Query: 272 IPFRDSKLTQIFQRS-LSGLSSTVKMIVNVNASPAYA--EETVQVLK 315
PFR+SKLTQ+ + S + S T MI + SP + E T+ L+
Sbjct: 351 TPFRESKLTQVLRDSFIGENSRTC-MIAMI--SPGISSCEYTLNTLR 394
Score = 49.2 bits (118), Expect = 5e-06
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 75 ENVLEVLDQKSIMFKPMKDMKCSITDTCN--LYRFSNIYGPHTTQAELFQNIVHNMLERY 132
+V+ V + ++ K K +T + F + + +++ +++
Sbjct: 92 IDVISVPSKCLLLVHEPKL-KVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTI 150
Query: 133 LNGEDALLFSFGTTNSGKTFTIQ 155
G A F++G T SGKT T+
Sbjct: 151 FEGGKATCFAYGQTGSGKTHTMG 173
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 98.4 bits (245), Expect = 5e-21
Identities = 74/409 (18%), Positives = 149/409 (36%), Gaps = 42/409 (10%)
Query: 431 KKLREQHEEDLERQRKF------YKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKL 484
K ++Q E Q L + E+E + + K
Sbjct: 812 AKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKE 871
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
+ Q + EL ELE K+ L EE + KL+ T + L K +L + E
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931
Query: 545 MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
ME + E E + L++ + +++ + ++E+ + +KL E+ + ++E
Sbjct: 932 MEARIEEEE--ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 605 YELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
++ + T + L+E++ + EE E L ++ ++ +
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE----EEKAKNLTKLKNKHESMISELE 1045
Query: 665 AESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIA 724
+ Q L+K + L D + I +L+A+I + +K KE+++
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE-------LKAQLAKKEEELQ 1098
Query: 725 ELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELA 784
+ E+ T Q + + I +++ D S K + K K D + +EL
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD----LSEELE 1154
Query: 785 EMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLK 833
+K +LED +++ + E R + +D K
Sbjct: 1155 ALK-------------------TELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 97.6 bits (243), Expect = 8e-21
Identities = 63/328 (19%), Positives = 138/328 (42%), Gaps = 5/328 (1%)
Query: 383 RLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLE 442
R E A+ E + + Q E + E E++ + ++ E + E E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 443 RQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKS 502
+ + + E L + + ++ E+ + A + + + ++ +L+++L E EA +
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
L E GK+K++ + + +N +L + L RV ++ E E+ K L
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE--EKAKNLT 1031
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
L ++ + E +++ ++L + +R L S++L ++ + IA
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 623 ELQEKLDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAESNQSAHDEQALQK 679
+ +E+L + ++E+ + + L IS L+ DLES +A N++ ++ L +
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Query: 680 EIKNLGSLLVDKDKTIGDLKAKIHKYEK 707
E++ L + L D T + K
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 90.3 bits (224), Expect = 1e-18
Identities = 61/386 (15%), Positives = 131/386 (33%), Gaps = 54/386 (13%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
LK+ ++E+ + + + E + +LKEL +++ L + L+ K+ +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
E E E L + E +E E IE+ ++L E++
Sbjct: 910 EAE---------EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK--------- 951
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
++Q+++ +E + +EE ++L EK ++K +
Sbjct: 952 -------------------KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 664 RAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
+Q+ L KE K L + D + + + K K + E +
Sbjct: 993 LIMEDQNN----KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Query: 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
+ + +EL + KLE + I ++ + L E+ L+A L
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ----IAELKAQLAKKEEELQAALARL 1104
Query: 784 AEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINN 843
+ + + ++LE ++ L+ +LE + + E +
Sbjct: 1105 ED---------ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 844 LKAQMEKSQQQQQQQRSPLKGLENQM 869
LK ++E + Q+
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDD 1181
Score = 84.1 bits (208), Expect = 1e-16
Identities = 48/295 (16%), Positives = 111/295 (37%), Gaps = 32/295 (10%)
Query: 397 KKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLM 456
K+E E + E ++E EE+++ KK +Q DLE Q + + + L
Sbjct: 922 KQELEEILHEMEARIEE------EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL- 974
Query: 457 TLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
+ ++ D + + + + I ++ + ++L + K L E D++ L E
Sbjct: 975 ---QLEKVTADGKIKKMEDD---------ILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 517 LTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQT 576
+ ++L + E +++L R+++ E+ Q L+ + + + E +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE---------LEKIKRKLEGESSDLH 1073
Query: 577 TEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQ 636
+I +L++++ +L + LE EL+ + ++ +
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Query: 637 EESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK 691
E + +K L +LE+ + E + Q+ + DK
Sbjct: 1134 SEKAARNKAEKQK----RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 52.5 bits (126), Expect = 6e-07
Identities = 33/208 (15%), Positives = 85/208 (40%), Gaps = 22/208 (10%)
Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME---ND 757
++ ++ KE ++ E ++ EL+ K +L ++ L+ Q+ E
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 758 ERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLK 817
+ K E++L E R++ ++ +++ +K+++ Q+ L+
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAE----------------KKKMQQQMLDLE 961
Query: 818 AELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
+LE+ + LQL+ + I ++ + + Q + K LE +++ + + +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 878 PSGEDTDDPDFLPRSRCKSTSKKRQLKK 905
E+ + L + + K S +L+
Sbjct: 1022 ---EEEEKAKNLTKLKNKHESMISELEV 1046
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 90.7 bits (224), Expect = 1e-18
Identities = 90/637 (14%), Positives = 196/637 (30%), Gaps = 166/637 (26%)
Query: 321 RDLLTVAKP--------RHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQ 372
+D+L+V + + + P+ SI++ E D + + + T
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPK-----SILSKE-----EIDHIIMSKDAVSGTLRL- 67
Query: 373 GSHDDPYETIRLLEARLAE--FEGFDKKEFEY---QIREEYREVQEDFRKMFEEQQTDWE 427
+ T+ + + + E + +++ I+ E R+ +M+ EQ+
Sbjct: 68 ------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLY 120
Query: 428 NNVKKLREQH----EEDLERQRKFYKTQIETLMTLV------K----NQQAEDDSEDETL 473
N+ + + + + L+ ++ + + + + K +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 474 N--------------ESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
+ E+ +E KL Q + + ++ + +L+ L +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 520 ENR--------DLVTKNKELEG-----KVAQLSRRVEEMER-GAQTENKPEEVKYLKSL- 564
V K K+ +R + + A T + +L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 565 LDEAKEEF-KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
DE K K + L EV + R L++ + + L D V D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 624 LQEK----LDYMENK--------FQEESLVYERLMS---------EKENLISQL--KADL 660
+ E L+ E + F + + L+S + ++++L + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 661 ESNRAESNQSAHDEQ-ALQKEIKNLGSLLVDKDKTIGDLKAKIHK--YEKYYAVMKEDRK 717
E ES S L+ +++N +L H+ + Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYAL---------------HRSIVDHY-------NI 455
Query: 718 TKEKDIAELKTKCEELTQQVTKLEADCQSYLNT-----IKNMENDERSTKHNQEKLLKIY 772
K D +L D Y + +KN+E+ ER ++
Sbjct: 456 PKTFDSDDL-----------IPPYLD--QYFYSHIGHHLKNIEHPERM-----TLFRMVF 497
Query: 773 ED----RLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQ-------VNSLKAELE 821
D K D A + +L Y+ + D VN++ L
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTL----QQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 822 Q-RHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQ 857
+ N++ LL+ ++ +A E++ +Q Q+
Sbjct: 554 KIEENLICSKYTDLLRIA-LMAEDEAIFEEAHKQVQR 589
Score = 78.0 bits (191), Expect = 9e-15
Identities = 92/615 (14%), Positives = 173/615 (28%), Gaps = 149/615 (24%)
Query: 254 CFNVLRENNGL--KADKKKLI--PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAY--- 306
C +V + K + +I S ++F LS V+ V Y
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 307 ----AEETVQ---VLKISSVARDLL----TVAKPRHLP-PPPRKKTRF------------ 342
E Q + ++ RD L V ++ P K R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 343 ---------SIMAARNLDWRESDIVFQERASGEMTDYF---QGSHDDPYETIRLLEARLA 390
+ +A Q + ++ F + + P + +L+ L
Sbjct: 155 IDGVLGSGKTWVALDVC----LSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLY 207
Query: 391 EFE--GFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLRE-QHEEDLERQRKF 447
+ + + + I+ +Q + R++ + + +EN + L Q+ + F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWN---AF 262
Query: 448 YKTQIETLMTLVKNQQAEDD-SEDETLNESAIEAQHKLKIQNLKQELSELEAKY-----K 501
+ L+T + +Q D S T + S L E+ L KY +
Sbjct: 263 -NLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQ 316
Query: 502 SLSEEHEDMS----GKLKELTRENRDLVT--KNKELEGKVAQLSRRVEEMERGAQTENK- 554
L E + + E R+ K+ + + + +E E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRK 373
Query: 555 --------PEEVK----YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR-------L 595
P L + + + S VEK +E L
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 596 LTVRSAELEYELEQR---DYLIAVKTDGAEELQEKLD-YMENKFQEESLVY---ERLMSE 648
E EY L + Y I D + + LD Y + + + E
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSH--IGHHLKNIEHPE 488
Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK---TIGDLKAKIHKY 705
+ L + D L+++I++ + T+ LK Y
Sbjct: 489 RMTLFRMVFLDFR--------------FLEQKIRHDSTAWNASGSILNTLQQLK----FY 530
Query: 706 EKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ 765
+ Y + I + K EE + + L E++
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENL-----ICSKYTDLLRIALMAEDEA------- 578
Query: 766 EKLLKIYEDRLKAVQ 780
I+E+ K VQ
Sbjct: 579 -----IFEEAHKQVQ 588
Score = 76.8 bits (188), Expect = 2e-14
Identities = 87/546 (15%), Positives = 172/546 (31%), Gaps = 154/546 (28%)
Query: 487 QNLKQELSELEAKYKSLSEEHE-----DMSGK-LKELTRENRDLVTKNKELEGKVAQLSR 540
++ E E + +YK + E + K ++++ + + +E++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----ILSKEEID-HIIMSKD 59
Query: 541 RVEEMERGAQT-ENKPEEV--KYLKSLLDE--------AKEEFKEQTTEIEQLRSEVEKL 589
V R T +K EE+ K+++ +L K E ++ + + ++L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 590 ------------SEERRLLTVRSAELEYELEQRDYLI------------AVKTDGAEELQ 625
S + L +R A L EL ++ A+ + ++Q
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQA-L-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 626 EKLDY------MENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQK 679
K+D+ ++N E+++ E L + L+ Q+ + S S+ ++Q
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVL-EML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 680 EIKNL-------GSLLV-D--KDKTIG---DLKAKI-------------HKYEKYYAVMK 713
E++ L LLV ++ +L KI + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 714 EDRKTKEKDIAE------LKTKCEELTQQVTK--------LEADCQSYLNTIKNMENDER 759
T D + L + ++L ++V + + L T N
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN------ 346
Query: 760 STKH-NQEKLLKIYEDRLKAVQ-DELAEM--KCAQLKPSLEASAATPSQY-----RKQLE 810
KH N +KL I E L ++ E +M + + PS S + +
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 811 DQVNSL-KAELEQRHN-----VVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKG 864
VN L K L ++ + + L+L K E L + + K
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-------VDHYNIPKT 458
Query: 865 LENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPSTHLNSTAGLAENVNLIT 924
++ D P D + HL E + L
Sbjct: 459 FDSD------DLIPPYLDQYFYSHIGH-----------------HL-KNIEHPERMTLF- 493
Query: 925 PRRIFF 930
R +F
Sbjct: 494 -RMVFL 498
Score = 64.9 bits (157), Expect = 1e-10
Identities = 96/609 (15%), Positives = 182/609 (29%), Gaps = 166/609 (27%)
Query: 18 NILFNSLGPYLDKSDVLFRPTYASNVSMLSKE---DRVQAFDVKKQILNSFD--QSYAGS 72
+IL ++D D ++ LSKE + + D L F S
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 73 TFENVLEVLDQKSIMF----------KPMKDMKCSITDTCNLYRFSNIYGP-HTTQAELF 121
+ +E + + + F +P + I LY + ++ + ++ + +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 122 QNIVHNMLERYLNGEDALLFSFGTTNSGKTF----TIQDLT----------YVNVHSCEE 167
+ L ++ L+ G SGKT+ ++N+ +C
Sbjct: 138 LKL-RQALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 168 AYRVLRFGKSHLSVAPTELNHRSSRS----HCVFSIK-----LVKVDPGSEELIMM---- 214
VL + L RS S + SI+ L+K P L+++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 215 -----SSFDI-C------------DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFN 256
++F++ C D A H S D T + +L + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 257 VLRENNGLKADKKKLIPF---------RD-------------SKLTQIFQRSLSGLSST- 293
L + P RD KLT I + SL+ L
Sbjct: 313 C--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 294 -----VKMIV---NVNASPAYAEETVQVL---KISSVARDLLTVAKPRHLPPPPRKKTRF 342
++ V + + + ++ I S ++ L K++
Sbjct: 371 YRKMFDRLSVFPPSAHIP----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 343 SIMAARNLDWRESDIVFQERASGE--------MTDYFQGSHDDPYETIRLLEAR--LAEF 392
SI I + + E + D++ + +
Sbjct: 427 SIP----------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 393 EGFDKKEFE-YQIREEYREVQEDFRKMFEEQQTDWENNVKKLR--------EQHEEDLER 443
G K E + +R V DFR F EQ K+R + +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFR--FLEQ---------KIRHDSTAWNASGSILNTLQ 525
Query: 444 QRKFYKTQIETLMTLVKN----QQAEDDSED--ETLNESAIEAQHKLKIQNLKQELSELE 497
Q KFYK I N ++ + D + E+ I +++ ++ L
Sbjct: 526 QLKFYKPYI------CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR------IALM 573
Query: 498 AKYKSLSEE 506
A+ +++ EE
Sbjct: 574 AEDEAIFEE 582
Score = 51.8 bits (123), Expect = 1e-06
Identities = 58/430 (13%), Positives = 121/430 (28%), Gaps = 150/430 (34%)
Query: 507 HEDMSGKLKELTRENRDLVTKNKELEGKVAQLS-RRVEEMERGAQTENKPEEVKYLKSLL 565
H M + E + +D+++ + V + V++M + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILS-------------- 47
Query: 566 DEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQ 625
KEE I + V RL L + E+ V+ E L+
Sbjct: 48 ---KEEIDH----IIMSKDAVSGT---LRLFWT----LLSKQEE-----MVQKFVEEVLR 88
Query: 626 EKLDYMENKFQEE----SLVYERLMSEKENLIS--QLKADLESNRAESNQSAHDEQALQK 679
++ + + E S++ + +++ L + Q+ A +R + L++
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ------PYLKLRQ 142
Query: 680 EIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV--MKEDRKTKEKDIAELKTKCEELTQQV 737
+ L + K + + KT + V
Sbjct: 143 ALLEL-------------------RPAKNVLIDGVLGSGKT-----------W--VALDV 170
Query: 738 TKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY----------EDRLKAVQDELAEMK 787
C SY M+ KI+ E L+ +Q L
Sbjct: 171 ------CLSY-KVQCKMDF-------------KIFWLNLKNCNSPETVLEMLQK-L---- 205
Query: 788 CAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRH--------------NVVR--DLQ 831
Q+ P+ + + S + ++ L+ L+ + +L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 832 LKLL---QKGEMINNLKAQMEK--SQQQQQQQRSPLKGLENQMAK-INIDRSPSGEDTDD 885
K+L + ++ + L A S +P + + K ++
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDC----------R 314
Query: 886 PDFLPRSRCK 895
P LPR
Sbjct: 315 PQDLPREVLT 324
Score = 36.8 bits (84), Expect = 0.038
Identities = 48/340 (14%), Positives = 97/340 (28%), Gaps = 107/340 (31%)
Query: 1 MGAEGTIEQPGIIPRTLNILFNSLGPYLDKS-DVL----FRPTYASNVSMLSKEDRVQAF 55
+ AE + ++ + L ++ S +VL +R + +S+
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVFPP------- 383
Query: 56 DVK--KQILNSFDQSYAGSTFENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGP 113
+L+ S V+ L + S++ K K+ SI +Y +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---IYLELKVKLE 440
Query: 114 HTTQAELFQNIVHN-MLERY------------LNGEDALLFSF-----GTTNSGKTFTIQ 155
+ +H +++ Y D +S + T+
Sbjct: 441 NEYA-------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 156 DLTYVNVHSCEEAYRVLRFGKSHLSVAPTELNHRSSRSHCVFSIKLVKVDPGSEELIMMS 215
+ +++ RF + + T N S + + +K K
Sbjct: 494 RMVFLD----------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK------------ 531
Query: 216 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 275
+ ICD D E R +N+ L L + E N +
Sbjct: 532 PY-ICD-------------NDPKYE-RLVNAILDFLPKI-----EENLIC---------- 561
Query: 276 DSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQVLK 315
SK T + + +L + + E QV +
Sbjct: 562 -SKYTDLLRIALMAEDEAI-----------FEEAHKQVQR 589
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 79.8 bits (197), Expect = 3e-15
Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 21/268 (7%)
Query: 402 YQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKN 461
Y +R+ Y+ + R Q L + + R+ K Q L +
Sbjct: 829 YVVRKRYQCM----RDATIALQALLR---GYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881
Query: 462 QQAEDDSEDETLNESAIEAQHKLKIQNLKQE---LSELEAKYKSLSEEHEDMSGKLKELT 518
L K +++ LK E + + + L + + K+ E
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941
Query: 519 RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
+E + L+ K LE + + ++ + + E K + + +EE + E
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE--EAKNATNRVLSLQEEIAKLRKE 999
Query: 579 IEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEE 638
+ Q ++E + + E + +L EL++++ L+ + EEL ++ +
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE---KEELNRRIH------DQA 1050
Query: 639 SLVYERLMSEKENLISQLKADLESNRAE 666
+ E + + QL+ DL R
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 72.1 bits (177), Expect = 6e-13
Identities = 39/237 (16%), Positives = 86/237 (36%), Gaps = 12/237 (5%)
Query: 541 RVEEMERGAQTENKPEEVKYLKS--LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTV 598
++ + RG NK + + ++ + + + L++ V RR++
Sbjct: 844 ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903
Query: 599 R-SAELEYELEQRDYLIAVKTDG---AEELQEKLDYMENKFQEESLVYERLMSEKENLIS 654
R +L+ E + + +LQ K+D +++ L
Sbjct: 904 RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
Query: 655 QLKADLESNRA---ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAV 711
+L++D+E R E+ + + +LQ+EI L L ++ KY+
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HE 1020
Query: 712 MKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
++ ++ LKT+ EEL +++ + + E + N E+L
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 66.3 bits (162), Expect = 4e-11
Identities = 31/197 (15%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 401 EYQIREEYREVQEDFRKMFEEQQ--TDWENNVKKLREQHEEDLERQRKFYKTQIETLMTL 458
+ E ++++ + R + ++ EN + +L ++ ++ ++ K ++ L
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL-QRKIDEQNKEYKSLLEKMNNLEIT 957
Query: 459 VKNQQAEDDSEDETLNESAIEAQHKLK--------IQNLKQELSELEAKYKSLSEEHEDM 510
+ + S+ E L S EA++ I L++EL + + + K++ E +
Sbjct: 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Query: 511 SGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKE 570
+ ++L E L +N L+ + +L+RR+ + + +++ + E
Sbjct: 1018 KHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAKEIT-----------ETMEKKLVE 1063
Query: 571 EFKEQTTEIEQLRSEVE 587
E K+ ++ R +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080
Score = 64.7 bits (158), Expect = 1e-10
Identities = 33/286 (11%), Positives = 91/286 (31%), Gaps = 33/286 (11%)
Query: 536 AQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRL 595
+ R+ + R A + L+ L K + + + ++ V
Sbjct: 828 MYVVRKRYQCMRDATIALQ----ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 596 LTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQ 655
A + + R + A+ +KL + ++ L ++ L +
Sbjct: 884 HRTLKAIVYLQCCYRRMM-------AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 656 LKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKED 715
+ + ++ + + E E + L S + + + K ++
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR----------- 985
Query: 716 RKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDR 775
+ +++IA+L+ + + + +E Y + + + ++ + + + R
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045
Query: 776 LKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELE 821
+ E+ E +L + KQLE +N + +
Sbjct: 1046 IHDQAKEITETMEKKLV-----------EETKQLELDLNDERLRYQ 1080
Score = 63.6 bits (155), Expect = 2e-10
Identities = 34/240 (14%), Positives = 92/240 (38%), Gaps = 9/240 (3%)
Query: 379 YETIRLLEARL-AEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQH 437
Y+ +R L A G+ + + E++ + + + +K +
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
Query: 438 EEDLERQ-RKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
++ K ++ + ++ E++ + + + ++L ++++ L
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM--ERGAQTENK 554
E Y + +E+ +L+ E ++ + L+ ++A+L + + + E+ E
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014
Query: 555 PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEE-----RRLLTVRSAELEYELEQ 609
+ + L+ E KE+ TE E+L + ++E + L + +LE +L
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Score = 63.2 bits (154), Expect = 3e-10
Identities = 40/283 (14%), Positives = 97/283 (34%), Gaps = 37/283 (13%)
Query: 593 RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
+R+ VR + + G + + + R + +
Sbjct: 826 QRMYVVRKRYQC--MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
LKA + Q + ++E+K L + +++ K E
Sbjct: 884 HRTLKAIVYL------QCCYRRMMAKRELKKL----KIEARSVERYKKLHIGLEN----- 928
Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
++ I E + + L +++ LE + +++ R E+ K
Sbjct: 929 --KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR----MSEEEAKNA 982
Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQL 832
+R+ ++Q+E+A+ L+ L + +K +E+ + K E EQ + +++
Sbjct: 983 TNRVLSLQEEIAK-----LRKELHQTQTE----KKTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 833 KLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINID 875
L + E +N K + +++ L + ++ +D
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKK-----LVEETKQLELD 1071
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 62.3 bits (152), Expect = 4e-12
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 241 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 300
A+ IN SL L + L E K +P+RDSK+T+I Q SL G T +++
Sbjct: 1 AKNINKSLSALGNVISALAEG------TKTHVPYRDSKMTRILQDSLDGNCRTT-IVICC 53
Query: 301 NASPAYAEETVQVLKISSVAR 321
+ S ET L A+
Sbjct: 54 SPSVFNEAETKSTLMFGQRAK 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-10
Identities = 83/501 (16%), Positives = 155/501 (30%), Gaps = 126/501 (25%)
Query: 341 RFSIMAARNLDW------RESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEG 394
++ + +E F + E T+ F + D+P L+ +F G
Sbjct: 17 EHVLLVPTAS-FFIASQLQEQ---FNKILP-EPTEGF-AADDEPTTPAELV----GKFLG 66
Query: 395 FDKKEFEYQIREEYREVQEDFRKMFEE---QQTDWENNVKKLREQHEEDLERQRKFYKTQ 451
+ E ++ +V FE + D KL ++++ L + ++ K
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 452 IETLMTLVKNQQAEDDSEDETLNESAIEAQHKL--------KIQNLKQELSELEAKYKSL 503
I + + + +S L + E +L + +EL +L Y L
Sbjct: 127 ITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 504 SEEH-EDMSGKLKELTRENR----------DLVT--KNKE----------------LEGK 534
+ + + L EL R +++ +N L G
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG- 242
Query: 535 VAQLSRRVEEMERGAQTENKPEEV-KYLKSLLDEAK--------------EEFKEQTTE- 578
V QL+ V + T P E+ YLK ++ E F +
Sbjct: 243 VIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 579 IEQL-----RSEVEKLSEERRLLTVRSAELEYELEQRD----YLIAVKTDGAEELQEKLD 629
I L R E ++ + LE LE + ++++ E++Q+ ++
Sbjct: 300 ITVLFFIGVRC-----YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 630 YMENKFQEESLVYERLMSEKENLI--------SQLKADLESNRAES--NQSA--HDEQAL 677
+ V L++ +NL+ L L +A S +QS E+ L
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 678 QKEIKNL-------GSLLVD-KDKTIGDLKAKIHKYEKY------YAVMKEDRKTKEKDI 723
+ + L LLV D DL + Y D D+
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FD----GSDL 468
Query: 724 AELKTKC-EELTQQVTKLEAD 743
L E + + +L
Sbjct: 469 RVLSGSISERIVDCIIRLPVK 489
Score = 57.0 bits (137), Expect = 3e-08
Identities = 91/553 (16%), Positives = 164/553 (29%), Gaps = 182/553 (32%)
Query: 472 TLNESAIEAQHKLKI--------QNLKQE-LSELEAKYKSLSEEHEDMSGKLKELTRENR 522
TL+ ++E H L + L+++ L + + + E +
Sbjct: 10 TLSHGSLE--HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT----------- 56
Query: 523 DLVTKNKELEGK-VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI-- 579
EL GK + +S VE + G ++V L L E + + + +I
Sbjct: 57 -----PAELVGKFLGYVSSLVEPSKVGQ-----FDQV--LNLCLTEFENCYL-EGNDIHA 103
Query: 580 --EQLRSEVEKLSEERRLLTVRS-------AELEYELEQRDYLIAVKTDGAEEL------ 624
+L E + + + L +++ A+ ++ + L +G +L
Sbjct: 104 LAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 625 Q-EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKN 683
Q DY F+E +Y+ +LI L + E+ + + N
Sbjct: 163 QGNTDDY----FEELRDLYQTYHVLVGDLIKFSAETLSE---LIRTTLDAEKVFTQGL-N 214
Query: 684 LGSLLVDKDKT---------------IGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKT 728
+ L + T IG + H Y V K EL++
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAH-----YVVT---AKLLGFTPGELRS 265
Query: 729 KCEELTQQVTKL-------EADC-QSYL-NTIKNMEN----DERSTKHNQEKLLKIYEDR 775
+ T L E D +S+ + K + R + L
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-----P 320
Query: 776 LKAVQDELAEMKCAQLKPSLEASAATPS-------QYRKQLEDQVNSLKAELEQ------ 822
++D SLE + PS ++Q++D VN + L
Sbjct: 321 PSILED------------SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 823 ------RHNVV----RDLQ-LKL-LQKGEMINNLKAQMEKSQQQQQ-QQR---------- 859
++ VV + L L L L+K KA Q + +R
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRK------AKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 860 ------SPLKGLENQMAKINIDRSPSGEDTDDPDFLPRSRCKSTSKKRQLKKPSTHLNST 913
S L L IN D L ++ +K ++ P
Sbjct: 423 VASPFHSHL--LVPASDLINKD-------------LVKNNVSFNAK--DIQIPVYDTFDG 465
Query: 914 AGLAENVNLITPR 926
+ L I+ R
Sbjct: 466 SDLRVLSGSISER 478
Score = 53.9 bits (129), Expect = 3e-07
Identities = 64/353 (18%), Positives = 108/353 (30%), Gaps = 113/353 (32%)
Query: 317 SSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNLDWRESDIVFQERASGEMTDYFQGSHD 376
S A+D+ A H + FSI DIV +T +F G
Sbjct: 1639 SKAAQDVWNRAD-NHF----KDTYGFSI----------LDIVIN--NPVNLTIHFGGEKG 1681
Query: 377 DPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQ 436
+ IR E + FE + + K+F+E + +
Sbjct: 1682 ---KRIR---------ENYSAMIFE-----TIVDGKLKTEKIFKE----INEHSTSYTFR 1720
Query: 437 HEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
E+ L +F TQ +TL++ ED + A A H L E + L
Sbjct: 1721 SEKGLLSATQF--TQP--ALTLMEKAAFEDLKSKGLIPADATFAGHSLG------EYAAL 1770
Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENK-- 554
+ +S E + E+ R G Q + R +
Sbjct: 1771 ASLADVMS--IESLV----EVVFY-R----------GMTMQ-----VAVPRDELGRSNYG 1808
Query: 555 -----PEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE---YE 606
P V S EA + VE++ + L +E Y
Sbjct: 1809 MIAINPGRVA--ASFSQEALQYV-------------VERVGKRTGWL------VEIVNYN 1847
Query: 607 LEQRDYLIAVKTDGAEELQEKLDYMENKFQ-------EESLVYERLMSEKENL 652
+E + Y+ A + + L+++ K Q ++SL E + + +L
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFI--KLQKIDIIELQKSLSLEEV---EGHL 1895
Score = 51.2 bits (122), Expect = 2e-06
Identities = 88/558 (15%), Positives = 157/558 (28%), Gaps = 196/558 (35%)
Query: 5 GTIEQPGIIPRTLNILFNSLGPYLDK-SDVLFRPT--YA------SNVSMLSK------- 48
G++E ++P + + L ++ + +L PT +A + ++ K
Sbjct: 14 GSLEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 49 ---EDRVQAFD-VKKQILNSFDQSY---------AGSTFENVLEVLDQKSIMFKPMKDMK 95
+V FD V L F+ Y A + L + + K
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK------ 124
Query: 96 CSITDTCNLYR---FSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFS-F-GTTNSGK 150
N + + + LF+ + +A L + F G N+
Sbjct: 125 -------NYITARIMAKRPFDKKSNSALFRAV---------GEGNAQLVAIFGGQGNTDD 168
Query: 151 TFT-IQDL--TY-VNVHS-CEEAYRVLRFGKSHLSVAPTE--------------LNHRSS 191
F ++DL TY V V + + L S L + L + S+
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 192 R------SHCVFSIKLVKVDPGSEELIMMSSFDI-CDLAGAE-RQKRAHTSGDRLREART 243
S L+ +I ++ + + L G + R++ G A
Sbjct: 225 TPDKDYLLSIPISCPLI-------GVIQLAHYVVTAKLLGFTPGELRSYLKG-----ATG 272
Query: 244 INSSLHVLARC---------FNVLRENNGLKADKKKLIPFRDSKLTQIF------QRSLS 288
+ L V A F + KA +T +F +
Sbjct: 273 HSQGL-VTAVAIAETDSWESF----FVSVRKA------------ITVLFFIGVRCYEAYP 315
Query: 289 GLSSTVKMIV----NVNASPAYAEETVQVLKISSVARDLL--TVAK-PRHLPP------- 334
S ++ N P+ L IS++ ++ + V K HLP
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 335 ------------PPRKKTRFS-----IMAARNLDWRESDIVFQERASGEMTDY------F 371
PP+ + A LD +S I F ER + F
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--QSRIPFSERKLKFSNRFLPVASPF 427
Query: 372 QGSHDDPY--ETIRLLEARLAEFE-GFDKKEFE---YQ------IREEYREVQEDFRKMF 419
H L+ L + F+ K+ + Y +R + E
Sbjct: 428 ---H-SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 420 EEQQTDWENNVKKLREQH 437
WE + + H
Sbjct: 484 IRLPVKWETTT-QFKATH 500
Score = 44.7 bits (105), Expect = 2e-04
Identities = 51/295 (17%), Positives = 87/295 (29%), Gaps = 109/295 (36%)
Query: 14 PRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQAFDVKKQILNSFDQSYAGST 73
P L I F G K R Y++ + E V ++I ++ T
Sbjct: 1669 PVNLTIHF---GGEKGKR---IRENYSA----MIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 74 FENVLEVLDQKSIMFKPMKDMKCSITDTCNLYRFSNIYGPHTTQAELF---QNIVHNMLE 130
F + +L T TQ L + ++
Sbjct: 1719 FRSEKGLLSA-----------------TQF------------TQPALTLMEKAAFEDLKS 1749
Query: 131 RYLNGEDALLF---SFG-----TTNSGKTFTIQDLTYVNVHSCEEAYRVLRFGKSHLSVA 182
+ L DA F S G + + +I+ L V V YR G +
Sbjct: 1750 KGLIPADA-TFAGHSLGEYAALASLAD-VMSIESLVEV-VF-----YR----GMTMQVAV 1797
Query: 183 PTELNHRSSRSHCVFSIKLVKVDPGSEELIMMSSFD------ICDLAGAERQKRAHTSGD 236
P + RS+ ++ ++PG + +SF + + G +G
Sbjct: 1798 PRDELGRSNYG-------MIAINPGR----VAASFSQEALQYVVERVGKR-------TGW 1839
Query: 237 RLREARTIN--------------SSLHVLARCFNVLRENNGLKADKKKLIPFRDS 277
+ E +N +L + NVL N +K K +I + S
Sbjct: 1840 LV-EI--VNYNVENQQYVAAGDLRALDTVT---NVL---NFIKLQKIDIIELQKS 1885
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 56.6 bits (137), Expect = 7e-10
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 245 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 304
N SL L + L E K +P+RDSK+T+I Q SL G T +++ + S
Sbjct: 1 NKSLSALGNVISALAEG------TKTHVPYRDSKMTRILQDSLGGNCRTT-IVICCSPSV 53
Query: 305 AYAEETVQVLKISSVAR 321
ET L A+
Sbjct: 54 FNEAETKSTLMFGQRAK 70
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 59.0 bits (141), Expect = 6e-09
Identities = 44/449 (9%), Positives = 122/449 (27%), Gaps = 11/449 (2%)
Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ 462
+ + E + ++ D + +++F Q E + +
Sbjct: 68 ENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRTE 127
Query: 463 QAEDDSEDETLNESAIEAQH---KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
A D+ + A ++ + + + + E + K + + L E R
Sbjct: 128 IAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYER 187
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
L T+ ELE AQ + + EA+ + T +
Sbjct: 188 RKGILDTRLSELEKN-----GGAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESL 242
Query: 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEES 639
R+ + + ++ ++ + D + K +
Sbjct: 243 NTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSA 302
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
++ R S L + D + +K + + + D +
Sbjct: 303 VIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDAR 362
Query: 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEA---DCQSYLNTIKNMEN 756
KI E + + + + L ++ + + K ++
Sbjct: 363 NKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQD 422
Query: 757 DERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSL 816
+ ++TK + + + + ++ + + K E +
Sbjct: 423 ELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADI 482
Query: 817 KAELEQRHNVVRDLQLKLLQKGEMINNLK 845
++ + L+ ++ ++ +NL
Sbjct: 483 NKKINAKDRAAIAAALESVKLSDISSNLN 511
Score = 45.9 bits (107), Expect = 5e-05
Identities = 48/412 (11%), Positives = 121/412 (29%), Gaps = 7/412 (1%)
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+ + E + + + +N + E + + + E+ E+ L+ + D+
Sbjct: 49 EKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADIT 108
Query: 526 -TKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLR 583
+ + L+ ++ + R E + + + L + E + + E+ +
Sbjct: 109 RQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQ 168
Query: 584 SEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYE 643
+ + AE E D ++ LD + + + +
Sbjct: 169 KD---AQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRND 225
Query: 644 RLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIH 703
R +SE N +S + L + R ++ + + +K I
Sbjct: 226 RAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIV 285
Query: 704 KYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKH 763
T + + ++ +
Sbjct: 286 VSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYN 345
Query: 764 NQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQR 823
+ RL ++++ + A SA T Q K D +N+L E E
Sbjct: 346 AEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQ--KHANDALNALLKEKENI 403
Query: 824 HNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINID 875
N + + K+ ++ + LKA + + +S + + ++ +
Sbjct: 404 RNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLARE 455
Score = 38.9 bits (89), Expect = 0.007
Identities = 35/298 (11%), Positives = 86/298 (28%), Gaps = 5/298 (1%)
Query: 574 EQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMEN 633
+ + RS++EK +E +T L + ++ + + EN
Sbjct: 36 NEWVDDSPTRSDIEKRDKE---ITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDEN 92
Query: 634 KFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK 693
+ L+A+L + + +D L E + L +
Sbjct: 93 TLKTLRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRI 152
Query: 694 TIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKN 753
+ + ++ I + EK + K +AE + + L ++++LE + + L +
Sbjct: 153 SPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDA 212
Query: 754 MENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQV 813
+ + ++ + ++L +V + L + A E
Sbjct: 213 QQARLLGQQTRNDRAISEARNKLSSVTESLNTARNAL--TRAEQQLTQQKNTPDGKTIVS 270
Query: 814 NSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
++ + I ++ S L N +
Sbjct: 271 PEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILND 328
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 55.7 bits (133), Expect = 5e-08
Identities = 44/412 (10%), Positives = 120/412 (29%), Gaps = 47/412 (11%)
Query: 323 LLTVAKPRHLPPPPRKKTRFSIMAARNLDWRESDI------VFQERASGEMTDYFQGSHD 376
V + L P + S + + +D+ V +++ +
Sbjct: 326 HDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVN 385
Query: 377 DPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQ 436
+R + Q K + V +L ++
Sbjct: 386 RSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKE 445
Query: 437 HEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSEL 496
E L+R R+ + L E+++ D L E + L + L
Sbjct: 446 LPELLQRNREILDESLRLL--------DEEEATDNDLRAKFKERWQRTPSNELYKPLRAE 497
Query: 497 EAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE 556
++ L + + + + + + L + E+
Sbjct: 498 GTNFR----------TVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELN---------- 537
Query: 557 EVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAV 616
+ S + E ++ L S ++++ +ER L + +++ +
Sbjct: 538 --AAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALA 595
Query: 617 KTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLK---ADLESNRAESNQSAHD 673
+ E + ++ + + + + ++E L+ ++ + + +N++
Sbjct: 596 QDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655
Query: 674 EQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAE 725
E+ L+ L +L A + + K+Y + E + ++
Sbjct: 656 EEVLKN--------LATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSD 699
Score = 46.5 bits (109), Expect = 4e-05
Identities = 46/395 (11%), Positives = 132/395 (33%), Gaps = 19/395 (4%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEME 546
L + ++ +Y ++ + + ++ L ++N D + ++ + K + ++
Sbjct: 287 AELIKTVASRYDEYVNVKDFSDKINRALAAAKKDN-DFIYHDRVPDLKDLDPIGKATLVK 345
Query: 547 RGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYE 606
++ L + + ++ V + + R T + +
Sbjct: 346 STPVNVPISQKFTDLFEKM-VPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLAS 404
Query: 607 LEQRDYLIAVKTDGA-EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRA 665
L + V D + + K + + +++ ++L+ E L+ + + L+ +
Sbjct: 405 LNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTV--DQLIKELPELLQRNREILDESLR 462
Query: 666 ESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY-------YAVMKEDRKT 718
++ + L+ + K ++ L+A+ + +KE ++
Sbjct: 463 LLDEEEATDNDLRAKFKERWQRT-PSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQS 521
Query: 719 KEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKA 778
I L EL + + + N+ S +K + E+ LK+
Sbjct: 522 HRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581
Query: 779 VQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKG 838
V ++ L + + +L+ L ++++ Q LL+
Sbjct: 582 VNFDMTSKFLTALA--QDGVINEEALSVTELDRVYGGLTTKVQES----LKKQEGLLKNI 635
Query: 839 EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873
++ + ++M++S + + LK L
Sbjct: 636 QVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFV 670
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 52.3 bits (125), Expect = 3e-07
Identities = 48/289 (16%), Positives = 112/289 (38%), Gaps = 12/289 (4%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
K K+Q LK + + + + + K+L E L K K E ++ + S +
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEAL 64
Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAE 602
++ + E+++ + +A+ + I+ E+++ E + E
Sbjct: 65 KDAQ---------EKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEE 115
Query: 603 LEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL---ISQLKAD 659
E ++ + + V A++ +EK++ E + +E + E + E + + +++D
Sbjct: 116 AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 175
Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
LE + S L++EIK + + L + K KYE+ V+ + K
Sbjct: 176 LERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235
Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL 768
E + +L + + LE + + K + + ++ +
Sbjct: 236 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 45.8 bits (108), Expect = 3e-05
Identities = 37/278 (13%), Positives = 98/278 (35%), Gaps = 5/278 (1%)
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
K++ L + + + + E E R +++E + K ++K + LD+ E
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQK--KLKATEDELDKYSEAL 64
Query: 573 KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYME 632
K+ ++E + + L R E EL++ +A EE ++ D E
Sbjct: 65 KDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESE 124
Query: 633 NKFQE---ESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLV 689
+ + E M +E + + K E + + A ++ +++
Sbjct: 125 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE 184
Query: 690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLN 749
+ +L+ +I ++ + + + + + + L+ ++ + E +
Sbjct: 185 LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 244
Query: 750 TIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMK 787
++ +E + Y+ + + L +M
Sbjct: 245 SVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282
Score = 43.1 bits (101), Expect = 2e-04
Identities = 38/284 (13%), Positives = 96/284 (33%), Gaps = 4/284 (1%)
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEEL 624
+D K++ + + E ++ +++ RS +LE EL + D ++
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 625 QEKLDYMENKFQEESLVYERLMSEKENL---ISQLKADLESNRAESNQSAHDEQALQKEI 681
E L + K + ++ +L I + +L+ + + + +K
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
+ + + K+ E K + ++ E+ K + + + E
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK-PSLEASAA 800
+ +E + ++ +N + L E + E+K K E A
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 801 TPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNL 844
+ +LE ++ L+ EL + + + +L + ++
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 41.2 bits (96), Expect = 0.001
Identities = 38/255 (14%), Positives = 90/255 (35%), Gaps = 5/255 (1%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
++ + E + K ++ ++ + K T L K +A D++++
Sbjct: 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
+ + +L + + E + E KL+E + + K +E + +
Sbjct: 79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE 138
Query: 540 RRVEEMER-----GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
++E E E+ + + + L + + + E + +L EE +
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIK 198
Query: 595 LLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLIS 654
+T LE + E+ + + L +KL E + + +L ++L
Sbjct: 199 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258
Query: 655 QLKADLESNRAESNQ 669
+L A +A S +
Sbjct: 259 ELYAQKLKYKAISEE 273
Score = 38.9 bits (90), Expect = 0.005
Identities = 32/219 (14%), Positives = 79/219 (36%), Gaps = 5/219 (2%)
Query: 396 DKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETL 455
DK + +E E+ E E ++ E+ + ER + E
Sbjct: 58 DKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117
Query: 456 MTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLK 515
++++ E + +++++ K + + KY+ ++ + + L+
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177
Query: 516 ELTRENRDLVTKNKELEGKVAQLSRRVEEMER-----GAQTENKPEEVKYLKSLLDEAKE 570
K ELE ++ ++ ++ +E + + EE+K L L EA+
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237
Query: 571 EFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
+ + +L ++ L +E ++ + EL+
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276
Score = 31.9 bits (72), Expect = 0.81
Identities = 29/169 (17%), Positives = 70/169 (41%), Gaps = 2/169 (1%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
E+ + E K+ E + E ++ Q +E + E LV +
Sbjct: 117 EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL 176
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+ +E+ A+ + +I+ + L LEA+ + S++ + ++K L+ + ++
Sbjct: 177 ERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236
Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
T+ + E V +L + ++++E + + + K + LD A +
Sbjct: 237 TRAEFAERSVTKLEKSIDDLED--ELYAQKLKYKAISEELDHALNDMTS 283
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 53.1 bits (128), Expect = 4e-07
Identities = 25/201 (12%), Positives = 66/201 (32%), Gaps = 12/201 (5%)
Query: 402 YQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIE----TLMT 457
++ ++ + + + E + + + KLR E +I+ L
Sbjct: 800 HKEYKKTEKPPK--GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK 857
Query: 458 LVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSG---KL 514
+ E + + A+ Q +I + + ++ Y +E + ++ KL
Sbjct: 858 AEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKL 917
Query: 515 KELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKE 574
K L + + + + + + ++ E+ E + + K +
Sbjct: 918 KNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAET 977
Query: 575 QTTEIEQLRSEVEKLSEERRL 595
L +E+E+L + L
Sbjct: 978 ---YKNTLLAELERLQKIEDL 995
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 52.7 bits (127), Expect = 5e-07
Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 15/211 (7%)
Query: 405 REEYREVQEDFR-KMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQ 463
+EY++ ++ + + E + + + KLR E +I++ + ++ +
Sbjct: 808 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 464 AEDDS----EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTR 519
E E + + A+ Q +I K E S E D ++ +
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRIL-KKLENWATTKSVYLGSNETGDSITAVQAKLK 926
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQT-TE 578
+ + LEG+ + PE + + + K T
Sbjct: 927 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY 986
Query: 579 IEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
L +E+E+L + +L +
Sbjct: 987 KNTLLAELERLQKIE--------DLHHHHHH 1009
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 51.8 bits (123), Expect = 9e-07
Identities = 43/417 (10%), Positives = 134/417 (32%), Gaps = 41/417 (9%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
+ + E+ + +E + + E KF + +
Sbjct: 334 GKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAML 393
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+ ET S I+A ++ E+ + + E ++ +EL +
Sbjct: 394 QQKDYETATLSEIKAL--------LKKHEAFESDLAAHQDRVEQIAAIAQELNELD---Y 442
Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
+ + + ++ + + + A T+ + E ++ + LL+ + + E +
Sbjct: 443 YDSPSVNARCQKICDQWDNLG--ALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNW 500
Query: 586 VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERL 645
+E E+ ++ + + +E + L + + + + +
Sbjct: 501 MEGAMED-----LQDTFIVHTIE-----------EIQGLTTAHEQFKATLPDADKERQAI 544
Query: 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKY 705
+ + ++ + + + Q + + +++ L+ +D+ + + A+ +
Sbjct: 545 LGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQN 604
Query: 706 EKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQ 765
E+ ++TK EE+ + ++ + LN ++ E + K
Sbjct: 605 ERLRKQFGAQANVIG---PWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKI 661
Query: 766 EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQ 822
++L ++ +A+ + + +QL + E+E
Sbjct: 662 DQLEGDHQQIQEALIFD---------NKHTNYTMEHIRVGWEQLLTTIARTINEVEN 709
Score = 36.0 bits (82), Expect = 0.064
Identities = 28/243 (11%), Positives = 74/243 (30%), Gaps = 14/243 (5%)
Query: 390 AEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYK 449
+ +E E R++ + + + ER RK +
Sbjct: 558 YHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQ-----QQNERLRKQFG 612
Query: 450 TQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHED 509
Q + ++ + E ++ + + ++ +L+Q + + + D
Sbjct: 613 AQANVIGPWIQTKMEEIGRISIEMHGTLED-----QLNHLRQYEKSIVNYKPKIDQLEGD 667
Query: 510 MSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAK 569
+ L +N+ + + QL + + + + K + E
Sbjct: 668 HQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRD---AKGISQEQM 724
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL-EYELEQRDYLIAVKTDGAEELQEKL 628
EF+ ++ ++ + + R L + E E + ++ G Q +
Sbjct: 725 NEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFI 784
Query: 629 DYM 631
D+M
Sbjct: 785 DFM 787
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 47.2 bits (112), Expect = 2e-05
Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 3/130 (2%)
Query: 744 CQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEM--KCAQLKPSLEASAAT 801
C + + + + E +L E++ V+ + + + S
Sbjct: 23 CG-IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDA 81
Query: 802 PSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSP 861
+ +++ +++ +A + + +R LQ + I NLK ++ + + Q Q+
Sbjct: 82 ATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKD 141
Query: 862 LKGLENQMAK 871
+ + K
Sbjct: 142 TVQIHDITGK 151
Score = 36.8 bits (85), Expect = 0.027
Identities = 14/114 (12%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 401 EYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKF---YKTQIETLMT 457
+ ++ ++ + +++ + E + ++ + +K ++ + D + + ++
Sbjct: 33 QTKVDKDLQSLEDILHQ-VENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLE 91
Query: 458 LVKNQQAEDDSEDETLNE-SAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
+ +A + D ++ I + KI NLK+++++LEA+ + ++ +
Sbjct: 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQI 145
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 46.9 bits (110), Expect = 3e-05
Identities = 31/285 (10%), Positives = 97/285 (34%), Gaps = 7/285 (2%)
Query: 389 LAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFY 448
L E + + ++ + + ++ ++++L + H + + +
Sbjct: 309 LPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVF 368
Query: 449 KTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKY-KSLSEEH 507
+ + Q E ++ E + + + L + + + +
Sbjct: 369 IR--SSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGI 426
Query: 508 EDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDE 567
G + ++ +DL K E K Q ++ + ++ + + L E
Sbjct: 427 YSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMT--DAILQTDQTLTE 484
Query: 568 AKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ--RDYLIAVKTDGAEELQ 625
++E + + + E ++ + L E +R + E ++ + ++ D + L+
Sbjct: 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544
Query: 626 EKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQS 670
E+ + K QE+ + + ++ ++ DL++
Sbjct: 545 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589
Score = 41.9 bits (97), Expect = 9e-04
Identities = 42/262 (16%), Positives = 97/262 (37%), Gaps = 6/262 (2%)
Query: 565 LDEAKEEFKEQTTEIEQLRSE-VEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEE 623
+ +A +++Q + QL +E +++L + R + E+ +D + + A +
Sbjct: 328 VQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQ 387
Query: 624 LQEKLDYMENKFQEESLVY--ERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
L++K D + QE S L L ++KA + S Q L+K+
Sbjct: 388 LEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY 447
Query: 682 KNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLE 741
+ ++ + + KEK+I + K E L
Sbjct: 448 YEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKML- 506
Query: 742 ADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
+ + ME ERS + + ++L + E+ + E +L+ +
Sbjct: 507 --HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564
Query: 802 PSQYRKQLEDQVNSLKAELEQR 823
+ + +++++ L+ ++ +R
Sbjct: 565 FQKESRIMKNEIQDLQTKMRRR 586
Score = 41.9 bits (97), Expect = 0.001
Identities = 26/216 (12%), Positives = 76/216 (35%), Gaps = 7/216 (3%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYRE-VQEDFRKMFEEQQTDWENNVKKLREQHE 438
+ L + LA + +F Q +E + + +F + + + + +
Sbjct: 375 DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYR 434
Query: 439 EDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEA 498
+++ + K E ++ ++ + + Q + ++E+
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 499 KYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEV 558
K +S + + ++ + + K + + + QL+ ++E E +
Sbjct: 495 KAESAQASAKMLHEMQRKN---EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA 551
Query: 559 KYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
L+ KE F++ E +++E++ L + R
Sbjct: 552 LKLQEQEQLLKEGFQK---ESRIMKNEIQDLQTKMR 584
Score = 33.8 bits (76), Expect = 0.29
Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 386 EARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQR 445
+A L + +KE E ++ E + KM E Q ++E+ +E++
Sbjct: 473 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ-----------RKNEQMMEQKE 521
Query: 446 KFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSE 505
+ Y+ ++ L ++N + + E E ++ Q +L + ++E ++ + + L
Sbjct: 522 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 581
Query: 506 EHEDM 510
+
Sbjct: 582 KMRRR 586
Score = 31.5 bits (70), Expect = 1.7
Identities = 30/219 (13%), Positives = 84/219 (38%), Gaps = 4/219 (1%)
Query: 655 QLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKE 714
A +E++ A AH EQ + ++++ L + D + + + +
Sbjct: 317 LALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDV 376
Query: 715 DRKTKEKDIAELKTKCEE-LTQQVTKLEADCQSYLNTI-KNMENDERSTKHNQEKLLKIY 772
D +++ A+L+ K ++ Q C L I +E + ++ +++ +++
Sbjct: 377 DHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLF 436
Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQL 832
+L+ ++ + E ++ E T + ++ + D + L ++ + ++
Sbjct: 437 VQKLQDLKKKYYEEPRKGIQ--AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 833 KLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
K L K++Q +Q+ + Q+ +
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533
Score = 30.3 bits (67), Expect = 3.2
Identities = 33/245 (13%), Positives = 90/245 (36%), Gaps = 7/245 (2%)
Query: 622 EELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEI 681
+++ +K+ QE ++ E + + + + +A E+
Sbjct: 337 QQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFC 396
Query: 682 KNLGSLLVDK-DKTIGDLKAKIHKYEKYYAVMKEDR-KTKEKDIAELKTKCEELTQQVTK 739
K D+ + + + + + K K + + + +LK K E ++ +
Sbjct: 397 KQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQ 456
Query: 740 LEADCQSYLNTIKNMENDERSTKHN---QEKLLKIYEDRLKAVQDELAEM--KCAQLKPS 794
E Q+YL + ++M + T +EK +++ + ++ Q + + +
Sbjct: 457 AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQM 516
Query: 795 LEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQ 854
+E + ++ KQL +++ + + +L + L+L+ ++ K +
Sbjct: 517 MEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEI 576
Query: 855 QQQQR 859
Q Q
Sbjct: 577 QDLQT 581
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.8 bits (105), Expect = 4e-05
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 403 QIREE---YREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLV 459
++ +E R+ +E+ RK +E + ++ RE+ ++DLE + Q+E
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------ 132
Query: 460 KNQQAEDDSEDETLNE 475
KN+ ++ +
Sbjct: 133 KNKINNRIADKAFYQQ 148
Score = 38.2 bits (88), Expect = 0.005
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 380 ETIRLL----EARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLRE 435
E+IR RL E + K + + RE+ ++ E++ + EQ E N R
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQ-EWREKAKKDLEEWNQRQSEQV---EKNKINNRI 140
Query: 436 QHEEDLERQRK 446
++ +Q
Sbjct: 141 -ADKAFYQQPD 150
Score = 37.8 bits (87), Expect = 0.007
Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 38/114 (33%)
Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
A+ L++E E +++ RE + K L+ E A ++ +E
Sbjct: 75 AQADRLTQEPE----SIRKW-REEQR-----KRLQ-------------ELDAASKVMEQE 111
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRD 611
+ ++AK++ +E ++ +VEK R+ A+ + +Q D
Sbjct: 112 WR------EKAKKDLEEWN---QRQSEQVEKNKINNRI-----ADKAF-YQQPD 150
Score = 35.9 bits (82), Expect = 0.026
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 29/104 (27%)
Query: 577 TEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQ 636
+ ++L E E + + R E L++ D A + ++ E +
Sbjct: 75 AQADRLTQEPESIRKWRE-------EQRKRLQELD---------AASKVMEQEWREKAKK 118
Query: 637 EESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKE 680
+ +R + E +NR D+ Q+
Sbjct: 119 DLEEWNQRQSEQVEKNK-------INNRIA------DKAFYQQP 149
Score = 34.7 bits (79), Expect = 0.071
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
++ T +++K RE+ + L+ K + ++A+ D E+ +S E
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWR-----EKAKKDLEEWNQRQS--E 129
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEE 506
K KI N + +A Y+ +
Sbjct: 130 QVEKNKINNRIAD----KAFYQQPDAD 152
Score = 31.7 bits (71), Expect = 0.75
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 23/101 (22%)
Query: 468 SEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTK 527
D E E+ K + + ++ L EL+A S +++ RE
Sbjct: 76 QADRLTQEP--ESIRKWREEQ-RKRLQELDAA-----------SKVMEQEWRE-----KA 116
Query: 528 NKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEA 568
K+LE R+ E++E+ + N+ + + + +
Sbjct: 117 KKDLE---EWNQRQSEQVEK-NKINNRIADKAFYQQPDADI 153
Score = 30.1 bits (67), Expect = 2.3
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 713 KEDRKT--KEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLK 770
+E+++ +E D A + E + LE + + +E ++ + + + +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLE---EWNQRQSEQVEKNKINNRIADKAFYQ 147
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 44.2 bits (104), Expect = 2e-04
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE-----E 557
LS + KLKEL E R+ + + K + + + +EE+ E E +
Sbjct: 88 LSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ 147
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
L + + E+ ++ +L + ++K ER
Sbjct: 148 FDILNKAVTSYNKILTEEDLQMRRLATALQKEIGER 183
Score = 43.8 bits (103), Expect = 2e-04
Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN 528
EDE NE + + +EL E+ + + + L +
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162
Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFK-EQTTEIEQLRSEVE 587
E + ++ +L+ +++ E G +T + VK + +D K + E+ E+ E+
Sbjct: 163 TEEDLQMRRLATALQK-EIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIA 221
Query: 588 KLSEE 592
++ +
Sbjct: 222 GMTAD 226
Score = 35.7 bits (82), Expect = 0.078
Identities = 24/161 (14%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 372 QGSHDDPYETIRLLEARLAE-FEGFDKKEFEYQIREEY-REVQEDFRKMFEEQQTDWENN 429
GS ++ + + E + + + ++ +R +Y +++E F K EE ++ N
Sbjct: 78 LGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY-NFMNG 136
Query: 430 VKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE---------DDSEDETLNESAIEA 480
+ E+ + K + + ++ + + + + T E+ +
Sbjct: 137 EANAEIEDEKQFDILNK----AVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVK 192
Query: 481 QHKLKIQNLKQELS-ELEAKYKSLSEEHEDMSGKLKELTRE 520
+++ KI LK + E + + +E M+ + E E
Sbjct: 193 EYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASE 233
Score = 30.7 bits (69), Expect = 2.7
Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 16/155 (10%)
Query: 589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSE 648
LS R + + ELE E + E+ ++L+ + N E+ +
Sbjct: 88 LSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ 147
Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKY 708
+ L + + + E Q ALQKE ++T + +Y
Sbjct: 148 FDILNKAVTSYNKILTEEDLQMRRLATALQKE---------IGERT-HAETVMVKEYRDK 197
Query: 709 YAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEAD 743
+K + E EE Q++ + AD
Sbjct: 198 IDALKNAIE------VERDGMQEEAIQEIAGMTAD 226
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/196 (8%), Positives = 60/196 (30%), Gaps = 8/196 (4%)
Query: 407 EYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKT-----QI-ETLMTLVK 460
E +D+ VK ++ + +E R + +I ++
Sbjct: 71 LNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKD 130
Query: 461 NQQAEDDSEDETLNESAIEAQHKLK--IQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
++ ++ + Q ++ ELS + + + ++ +++
Sbjct: 131 YSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIE 190
Query: 519 RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
+ ++ K +L + + + E ++ E
Sbjct: 191 KLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAE 250
Query: 579 IEQLRSEVEKLSEERR 594
+++ ++ K+ ++R+
Sbjct: 251 EKKILNQFLKIKKKRK 266
Score = 42.8 bits (101), Expect = 4e-04
Identities = 15/151 (9%), Positives = 54/151 (35%), Gaps = 8/151 (5%)
Query: 401 EYQI---REEYREVQEDFRK----MFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIE 453
Y+I Y++ + + ++ +V+++ Q +L R + I+
Sbjct: 118 SYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ 177
Query: 454 TLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGK 513
+ ++ + + +++ K E+ + +++ G+
Sbjct: 178 YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRG-SRYDEAEGR 236
Query: 514 LKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
+ + E L + K++ + ++ ++ +E
Sbjct: 237 FEVINNETEQLKAEEKKILNQFLKIKKKRKE 267
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 42.4 bits (99), Expect = 4e-04
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 14/180 (7%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
++I +L +E+ LE + ++ + + + +L + L+ +V++ + ++
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
+ ++ ++ + E K E E+ L E + E L
Sbjct: 71 DTN---------AKIASIQKKMSEIKSE-----RELRSLNIEEDIAKERSNQANREIENL 116
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESN 663
+ E++++ EL++ +E+ + E + L E
Sbjct: 117 QNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176
Score = 37.4 bits (86), Expect = 0.013
Identities = 25/163 (15%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 557 EVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAV 616
E+ +L +D + +E+ ++++ ++ E ++ L L+ ++ + + +
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71
Query: 617 KTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQA 676
+Q+K+ ++++ + SL E ++++ +Q ++E+ + E + + ++
Sbjct: 72 TNAKIASIQKKMSEIKSERELRSLNIEEDIAKER--SNQANREIENLQNEIKRKSEKQED 129
Query: 677 LQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
L+KE+ L L ++ + + + I + ++ KED K
Sbjct: 130 LKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK 172
Score = 37.0 bits (85), Expect = 0.020
Identities = 28/204 (13%), Positives = 70/204 (34%), Gaps = 25/204 (12%)
Query: 570 EEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLD 629
+Q EI L E++ L R + + E ++ I + L+ ++
Sbjct: 4 NTHLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVS 63
Query: 630 YMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLV 689
E + + I+ ++ + ++E + ++L E
Sbjct: 64 KNEQT-----------LQDTNAKIASIQKKMSEIKSER-----ELRSLNIEEDIAKERSN 107
Query: 690 DKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLN 749
++ I +L+ +I + + +K++ EK EL++ E + + + +
Sbjct: 108 QANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF---- 163
Query: 750 TIKNMENDERSTKHNQEKLLKIYE 773
+ E + + K+ YE
Sbjct: 164 -----KKKEDLVEKTEPKIYSFYE 182
Score = 34.3 bits (78), Expect = 0.16
Identities = 25/155 (16%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKL---LKIYEDRL 776
+K+I L+ E + + K D ++ I N+E ++ + K K L+ ++
Sbjct: 17 DKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI 76
Query: 777 KAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQ 836
++Q +++E+K + SL + Q ++ +L+ E++++ DL+ ++L+
Sbjct: 77 ASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136
Query: 837 KGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
++ L++ +E + ++ + + + + +
Sbjct: 137 LEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 43.0 bits (100), Expect = 5e-04
Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 5/286 (1%)
Query: 535 VAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERR 594
+ RR E + A+ + E K +K L KE + + +E +
Sbjct: 553 ITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKE-LAGKALNFNKAVAEAKSTGNYDE 611
Query: 595 LLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYE--RLMSEKENL 652
+ +LE L +R++L E + ME K Q S E L++++ N
Sbjct: 612 V-KKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANR 670
Query: 653 ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVM 712
++ A ++ + + + + + K++K+ + +K + K
Sbjct: 671 DARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGS 730
Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIY 772
+D + I++++ L + D ++EN + NQ+ K+
Sbjct: 731 VKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVTDKV- 789
Query: 773 EDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKA 818
++ +AV A ++++ L + Q +
Sbjct: 790 DNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNT 835
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 41.7 bits (97), Expect = 0.001
Identities = 44/288 (15%), Positives = 107/288 (37%), Gaps = 28/288 (9%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
+++ ++ + F ++ Q D EN +KKL++ E + + ++ + Q + Q +
Sbjct: 12 QKHLQINQRFEELRLITQ-DTENELKKLQQTQEYFIIQYQESLRIQAQ------FAQLGQ 64
Query: 466 DDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
+ ++ E+A++ + L++E L+ L+E+H+ L++
Sbjct: 65 LNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQ-------- 116
Query: 526 TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSE 585
+ L+ ++ Q RR + G E + ++ L E + ++Q E L +
Sbjct: 117 -QTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQQ 175
Query: 586 V---EKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKF--QEESL 640
+ + E + ++ L ++I E+ ++ + KF L
Sbjct: 176 LPIPGPVEEMLAEVNATITDIISALVTSTFII-------EKQPPQVLKTQTKFAATVRLL 228
Query: 641 VYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLL 688
V +L + E ++ + EI N ++
Sbjct: 229 VGGKLNVHMNPPQVKATIISEQQAKSLLKNENTRNECSGEILNNCCVM 276
Score = 40.2 bits (93), Expect = 0.004
Identities = 28/208 (13%), Positives = 71/208 (34%), Gaps = 18/208 (8%)
Query: 468 SEDETLNESAIEAQHKL--KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLV 525
S L ++ + ++ + + L+ + E + K L + E + +E R
Sbjct: 1 SPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFA 60
Query: 526 TKN----KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQ 581
+E + L ++ +E Q E + L+ E E+ ++ + +
Sbjct: 61 QLGQLNPQERMSRETALQQKQVSLETWLQ-----REAQTLQQYRVELAEKHQKTLQLLRK 115
Query: 582 LRSEV--EKLSEERRL--LTVRSAELEYELEQRDY---LIAVKTDGAEELQEKLDYMENK 634
++ + ++L + +R L E L+ +A + + +++ +
Sbjct: 116 QQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLCQQ 175
Query: 635 FQEESLVYERLMSEKENLISQLKADLES 662
V E L + + A + S
Sbjct: 176 LPIPGPVEEMLAEVNATITDIISALVTS 203
Score = 36.3 bits (83), Expect = 0.051
Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Query: 724 AELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDEL 783
+ + ++Q+ ++ + ++ EN+ + + QE + Y++ L+ +Q +
Sbjct: 1 SPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLR-IQAQF 59
Query: 784 AEM-----------------KCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV 826
A++ K L+ L+ A T QYR +L ++ L ++ +
Sbjct: 60 AQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTI 119
Query: 827 VRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
+ D +L ++ + + E S Q L + Q
Sbjct: 120 ILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQN 162
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 41.5 bits (97), Expect = 0.001
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 34/165 (20%)
Query: 732 ELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQL 791
EL + K E + L +K+ T + + + +++L Q +
Sbjct: 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR-------- 137
Query: 792 KPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKS 851
K + ++ E+E +N ++D + + L+A ++
Sbjct: 138 ---------------KDNDIILSEYNTEMELHYNYIKDNLDNNIPSS--LRVLRAVIDSL 180
Query: 852 QQQQQQQRSPLKGLENQMAKINID-RSPSGEDTDDPDFLPRSRCK 895
++ Q+ LEN +A RSP + P R C+
Sbjct: 181 HKKIQK-------LENAIATQTDYCRSPCVASCNIPVVSGRE-CE 217
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 40.6 bits (94), Expect = 0.002
Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 20/165 (12%)
Query: 731 EELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED--RLKAVQDELAEMKC 788
+EL +V ++ + IK++E Q++ + + + +A+
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLE-------DLQDEYDFKCKTLQNREHETNGVAKSDQ 57
Query: 789 AQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKG---------- 838
Q + L+ RK++ ++ L E N + + +L ++
Sbjct: 58 KQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPP 117
Query: 839 -EMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGED 882
++ L+ + QQ R LK LE K + P ++
Sbjct: 118 NACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKN 162
Score = 32.5 bits (73), Expect = 0.65
Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 33/165 (20%)
Query: 478 IEAQHKL--KIQNLKQELSELEAKYKSLSEEHEDMSGKLKE------------------- 516
++ Q +L K++N+K ++ +E + KSL + ++ K K
Sbjct: 1 LDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQE 60
Query: 517 ----------LTRENRDLVTKNKELEGKVAQLSRRV--EEMERGAQTENKPEEVKYLKSL 564
L + +++V K EL + +E+ + + +
Sbjct: 61 QLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNAC 120
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
LD+ + F ++Q+R +++KL E + T + +
Sbjct: 121 LDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQV 165
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 40.6 bits (94), Expect = 0.002
Identities = 34/256 (13%), Positives = 86/256 (33%), Gaps = 29/256 (11%)
Query: 354 ESDIVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYREVQE 413
E++ + Q + +DP + ++ + L E ++K E R +
Sbjct: 74 ENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKE----ERKILENAQRFNQAQSGN 129
Query: 414 DFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETL 473
+ ++Q + ++ V+ ++ +E + K + + K Q + +
Sbjct: 130 IQSTVMLDKQKELDSKVRNVK-DKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVA 188
Query: 474 NESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEG 533
+ Q LK+ L+ K K + + ++ + N +
Sbjct: 189 KSDQKQEQ-----LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQ---------NALIND 234
Query: 534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
++ + RR + G + LD+ + F ++Q+R +++KL E
Sbjct: 235 ELVEWKRRQQSACIGGPPN----------ACLDQLQNWFTIVAESLQQVRQQLKKLEELE 284
Query: 594 RLLTVRSAELEYELEQ 609
+ T + +
Sbjct: 285 QKYTYEHDPITKNKQV 300
Score = 32.2 bits (72), Expect = 0.94
Identities = 22/139 (15%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Query: 723 IAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDE 782
+++L + + E + N K+ N + + + + ++ I LK +
Sbjct: 61 LSQLDDQYSRFSL-----ENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKI 115
Query: 783 LAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKA---ELEQRHNVVRDLQLKLLQKGE 839
L + S + +K+L+ +V ++K +E + DLQ + K +
Sbjct: 116 LENAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCK 175
Query: 840 MINNLKAQMEKSQQQQQQQ 858
+ N + + + Q+Q
Sbjct: 176 TLQNREHETNGVAKSDQKQ 194
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 40.6 bits (94), Expect = 0.003
Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 35/198 (17%)
Query: 418 MFEEQQTDWENNVKKLR------EQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDE 471
+ E+Q E +++ +R EQ + +E + + +TL + Q +++
Sbjct: 10 VVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSV 69
Query: 472 TLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKEL 531
+Q++ +LE +L + + +L L +
Sbjct: 70 -----------------TRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQ--KTLT 110
Query: 532 EGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSE 591
+ ++A RR + G LD + Q R +++KL E
Sbjct: 111 DEELADWKRRQQIACIGGPPN----------ICLDRLENWITSLAESQLQTRQQIKKLEE 160
Query: 592 ERRLLTVRSAELEYELEQ 609
++ ++ + +
Sbjct: 161 LQQKVSYKGDPIVQHRPM 178
Score = 38.7 bits (89), Expect = 0.008
Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 15/165 (9%)
Query: 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED-RLKAVQDELAEM---KC 788
+T++ LE Q ++++E + ++ Q+ Y+ + + +L
Sbjct: 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVT 70
Query: 789 AQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQK----------- 837
Q LE Q R+ + ++ L + +E + D +L ++
Sbjct: 71 RQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPP 130
Query: 838 GEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGED 882
++ L+ + + Q Q R +K LE K++ P +
Sbjct: 131 NICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQH 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/449 (10%), Positives = 138/449 (30%), Gaps = 11/449 (2%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
+ E+ + + + N+ + +++ +R F + I+ L +KN QA+
Sbjct: 247 LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD 306
Query: 466 DDSED-----ETLNESAIEAQHKLKIQNLKQELSE-LEAKYKSLSEEHEDMSGKLKELTR 519
D ++LN + +++ ++ ++++ + + EL +
Sbjct: 307 LDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLLEQDVNELKK 366
Query: 520 ENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEI 579
+ + +L G + + + + + +S + F+
Sbjct: 367 RIDSVEPEFNKLTGIRDEFQKEIINT----RDTQARTISESFRSYVLNLGNTFENDFLRY 422
Query: 580 EQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEES 639
+ + + LS +R + + +E D A +++ + +
Sbjct: 423 QPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYG 482
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
Y ++ + ++ + + ++ + +L + G
Sbjct: 483 ASYNQITDQITEKLTGKDVKVHTTTTAEEDNSPGWAKWAMGLLSLSKGNLAGFALAGAGF 542
Query: 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER 759
+ Y+ V+ L L Q+ +K + +
Sbjct: 543 DWKNILLNYFTVIGIGGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKTAKKELV 602
Query: 760 STKHNQ-EKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKA 818
+ ++ + +K D ++ + + + KQ + + + ++
Sbjct: 603 KHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRES 662
Query: 819 ELEQRHNVVRDLQLKLLQKGEMINNLKAQ 847
E + N+ D+ +L + +NL A
Sbjct: 663 EFNRLKNLQEDVIAQLQKIEAAYSNLLAY 691
Score = 29.2 bits (64), Expect = 7.5
Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 8/238 (3%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
+ I A D ++ + + ++ ++ K+
Sbjct: 450 QYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQITEKLTGKDVKVHTTTTA 509
Query: 440 DLERQRKFYKTQIETLMTLVKNQ------QAEDDSEDETLNESAIEAQHKLKIQNLKQEL 493
+ + + K + L N A D ++ LN + + L
Sbjct: 510 EEDNSPGWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAVTGILL 569
Query: 494 SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTK--NKELEGKVAQLSRRVEEMERGAQT 551
+ L +EL + + + K + + + V+E +
Sbjct: 570 GPIGFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYER 629
Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
E + S E K++ T SE +L + + + ++E
Sbjct: 630 EVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSN 687
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 40.3 bits (94), Expect = 0.004
Identities = 30/221 (13%), Positives = 72/221 (32%), Gaps = 33/221 (14%)
Query: 438 EEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELE 497
L+RQ + + + + + + +++ + L+
Sbjct: 1880 IRLLKRQGRQNYVTPRHYLDFINQVVL-------------LINEKRDQLEEEQLHLNIGL 1926
Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
K + + +D+ L + RE L KN++ K+ Q+ + + E K ++
Sbjct: 1927 KKLRDTEAQVKDLQVSLAQKNRE---LDVKNEQANQKLKQMVQDQQAAEI------KQKD 1977
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
+ L+ LD +E Q + + E R + E + V
Sbjct: 1978 ARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEV--EQLENAANELKLKQDEIVA 2035
Query: 618 TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKA 658
T L++ + + ++ L+ E E + ++
Sbjct: 2036 T--ITALEKSIATYKEEYAT-------LIRETEQIKTESSK 2067
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 39.4 bits (92), Expect = 0.004
Identities = 11/64 (17%), Positives = 28/64 (43%)
Query: 808 QLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLEN 867
++ +++ +A + + +R LQ + I NLK ++ + + Q Q+ + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
Query: 868 QMAK 871
K
Sbjct: 61 ITGK 64
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 39.1 bits (90), Expect = 0.007
Identities = 41/403 (10%), Positives = 137/403 (33%), Gaps = 41/403 (10%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
E+ + +E + + E KF + +Q + E+ + + +
Sbjct: 109 EQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVR 168
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
A + K + + +L+ + + + ++ +++ + + ++ + +++ + +L
Sbjct: 169 ALLR-KHEAFESDLAAHQDRVEQIAAIAQEL---NELDYHDAVNVNDRCQKICDQWDRLG 224
Query: 540 RRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVR 599
++ E ++ L +D+ EF ++ + ++
Sbjct: 225 TLTQKRRE------ALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAME--------DLQ 270
Query: 600 SAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKAD 659
+ + +E + L + + E + +M+ + + +++
Sbjct: 271 DMFIVHSIE-----------EIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSY 319
Query: 660 LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTK 719
+ + S L+ + + L+ +D+++ + A+ H E+
Sbjct: 320 NIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQA--- 376
Query: 720 EKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAV 779
++ K EE+ + ++ + +N +K E++ + K+N +KL ++ +A+
Sbjct: 377 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEAL 436
Query: 780 QDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQ 822
+ + + L + E+E
Sbjct: 437 VFD---------NKHTNYTMEHIRVGWELLLTTIARTINEVET 470
Score = 31.8 bits (71), Expect = 1.1
Identities = 41/358 (11%), Positives = 116/358 (32%), Gaps = 35/358 (9%)
Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
EL + + +E + ++++ + + K ++ ++E + ++
Sbjct: 21 SELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQT 80
Query: 589 LSEERRLLTVRSAELEY---------ELEQRDYLIAVKTDGAEELQEKLDYMENKFQEES 639
+E + LEQ + E+L+++ KF++++
Sbjct: 81 KLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKA 140
Query: 640 LVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLK 699
+E KE ++ Q + S + +AL ++ + S L + +
Sbjct: 141 STHETWAYGKEQILLQKD--------YESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 192
Query: 700 AKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDER 759
A + + D + +C+++ Q +L Q ++ ME
Sbjct: 193 AIAQELN----------ELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 242
Query: 760 STKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAE 819
+ + K ++ + +++ + S+E + L KA
Sbjct: 243 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEI--------QSLITAHEQFKAT 294
Query: 820 LEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKINIDRS 877
L + + + + ++I + ++ S L+ +++ ++ R
Sbjct: 295 LPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRD 352
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 36.3 bits (85), Expect = 0.010
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764
Y+ Y +++ D+ K + E+ + + +L A+ + N++N +
Sbjct: 13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72
Query: 765 QEKLLKIYEDRLKAVQDELAEMKC--AQL----------KPSLEASAATPSQYRKQLE 810
E LK ++L +++ L + K A+L K +L+ AT YRK LE
Sbjct: 73 GELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIAT---YRKLLE 127
Score = 30.6 bits (70), Expect = 1.0
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDS 468
E + ++ +EE Q + LR E E R + + E + N + + +
Sbjct: 7 TEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAE-----IDNVKKQCAN 61
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
+ ++ E + +L +++ + +L+ELE +L + +DM+ L+E
Sbjct: 62 LQNAIADA--EQRGELALKDARNKLAELEE---ALQKAKQDMARLLRE 104
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 36.0 bits (84), Expect = 0.014
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 705 YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHN 764
+ + + T + + K++ EL + + LE + QS L+ ++EN TK
Sbjct: 15 FFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74
Query: 765 QEKLLKIYEDRLKAVQDELAEMKC---AQL---------KPSLEASAATPSQYRKQLE 810
L ++ + +V+++LA+++C Q K LE AT YR+ LE
Sbjct: 75 YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT---YRRLLE 129
Score = 30.6 bits (70), Expect = 0.98
Identities = 18/108 (16%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 409 REVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDS 468
++ +E F EE + N + ++ E E +R +IE +++Q + S
Sbjct: 9 KDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIE-----LQSQLSMKAS 63
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKE 516
+ +L E+ + ++ +++ +++ + +E + L++ +M + +E
Sbjct: 64 LENSLEET--KGRYCMQLAQIQEMIGSVEEQ---LAQLRCEMEQQNQE 106
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 37.9 bits (87), Expect = 0.018
Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 25/204 (12%)
Query: 389 LAEFEGFDKKEFEYQIREEYREV---QEDFRKMFEEQQTDWENNVKKLREQHEEDLER-- 443
+ F+K E + Y EV Q+D K +++ E V+K E + +
Sbjct: 330 AGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKRE-HLEKEVEKKLESKSGNKNKME 388
Query: 444 QRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSL 503
+ +Q + + L N++A D+ QNLK EL K + +
Sbjct: 389 AKAQANSQKDEIFAL-INKEANRDARAIAY------------TQNLKGIKRELSDKLEKI 435
Query: 504 SEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKS 563
S++ +D S E KNK+ L ++ +V+ L +
Sbjct: 436 SKDLKDFSKSFDEFKNG------KNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNA 489
Query: 564 LLDEAKEEFKEQTTEIEQLRSEVE 587
L+E K + +++ Q +S++E
Sbjct: 490 ALNEFKNGKNKDFSKVTQAKSDLE 513
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 37.8 bits (88), Expect = 0.019
Identities = 32/269 (11%), Positives = 73/269 (27%), Gaps = 11/269 (4%)
Query: 458 LVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKEL 517
+ K Q D+ E + L ++ E+ E G + L
Sbjct: 147 VEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVK-------GQELAPGVVSRL 199
Query: 518 TRENRDLVTKNKELEG-KVAQLSRRVEEMERGAQTENKPEEV--KYLKSLLDEAKEEFKE 574
+ +E K + R+ + KP E+ + + L A+EE
Sbjct: 200 DGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVV 259
Query: 575 QTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENK 634
+ E+E+ V + +E + + + + + + ++
Sbjct: 260 ELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRA 319
Query: 635 FQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKT 694
Q E+ + L D + + + ++
Sbjct: 320 AQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIA 379
Query: 695 IGDLKAKIHKYEKYYAVMKEDRKTKEKDI 723
+ +H+ V+K E D+
Sbjct: 380 EAEGVVHLHEPASIL-VVKARVYPFEDDV 407
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 35.3 bits (81), Expect = 0.029
Identities = 25/153 (16%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
+++ L+ ++ EL +K L E + L+ K+ ELE ++ ++ ++
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 545 MER-----GAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVR 599
+E + + EE+K L L EA+ + + +L ++ L +E ++
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 600 SAELEYELEQRDYLIAVKTDGAEELQEKLDYME 632
+ E++Q + + L+ ++ ++
Sbjct: 121 YKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153
Score = 31.5 bits (71), Expect = 0.72
Identities = 27/160 (16%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 432 KLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQ 491
++++ ++ E K Y + E ++AE+ +E + +E + K +
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKT----VTN 56
Query: 492 ELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQT 551
L LEA+ + S++ + ++K L+ + ++ T+ + E V +L + ++++E
Sbjct: 57 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116
Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSE 591
+ + K + + + +++ +E ++ L +EV +L +
Sbjct: 117 QK--LKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 30.3 bits (68), Expect = 1.8
Identities = 28/157 (17%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 634 KFQEESLVYERLMSEKENLISQL---KADLESNRAESNQSAHDEQALQKEIKNLGSLLVD 690
+ ++ E L+S+ +L +++ K LE + S L++E+K + + L
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 691 KDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNT 750
+ K KYE+ V+ + K E + +L + + LE + +
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 751 IKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMK 787
K + + + + E+L + +++E+A +K
Sbjct: 121 YKAISEEMKQLEDKVEEL----LSKNYHLENEVARLK 153
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 36.4 bits (85), Expect = 0.044
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 496 LEAKYKSLSE--EH-EDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE-EMERGAQT 551
L ++ SL ++ + + ++E + D + + +L A++ + E++ +
Sbjct: 207 LLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDL----AKVRTDLPLEVDFAKRR 262
Query: 552 ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRD 611
E E L++ L+ EF E L E K EE A + + L +++
Sbjct: 263 EPDRER---LRAFLERL--EFGSLLHEFGLL--ESPKALEEAPWPPPEGAFVGFVLSRKE 315
Query: 612 YLIA 615
+ A
Sbjct: 316 PMWA 319
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 36.7 bits (84), Expect = 0.045
Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 14/220 (6%)
Query: 459 VKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
+ D + + A+ Q+ L + ++ + E + + + S +L
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQR---SVQLAIEI 664
Query: 519 RENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE 578
N E + + R+E + Q+E + + L+ E
Sbjct: 665 TTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724
Query: 579 IEQLRSEVEKLSEERRLLTVRS----------AELEYELEQRDY-LIAVKTDGAEELQEK 627
+ R+E ++ E +L + AELE + R+ LI + E+ +
Sbjct: 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKA 784
Query: 628 LDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAES 667
+ ++ + E L ++ +++ +S
Sbjct: 785 QQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQS 824
Score = 32.1 bits (72), Expect = 1.00
Identities = 35/265 (13%), Positives = 76/265 (28%), Gaps = 8/265 (3%)
Query: 498 AKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEE 557
+ + H++ + ++ + + V + +
Sbjct: 583 VASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQS 642
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
V+ + +A + + EI E E +RL LE +
Sbjct: 643 VEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKA 702
Query: 618 TDGAEELQEKLDYMENKFQEESLV---YERLMSEKENLISQLKADLESNR----AESNQS 670
EL+ +E+ ++ E E E + Q K ++ AE +
Sbjct: 703 RKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERV 762
Query: 671 AHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKC 730
+ + L V K + + +++AK K A+ + E++ K
Sbjct: 763 KKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMT-EALGPGTIRDLAVAGPEMQVKL 821
Query: 731 EELTQQVTKLEADCQSYLNTIKNME 755
+ + L D S +N
Sbjct: 822 LQSLGLKSTLITDGSSPINLFSTAF 846
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 35.6 bits (81), Expect = 0.051
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
+ E + + + + + ++L + A L ++E ++ L+
Sbjct: 1 MGESERSEAFGIPRDSPLSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLE 60
Query: 563 SLLDEAK-------EEFKEQTTEIEQLRSEVEKLSE 591
+ +D E KE ++ LR EV++L +
Sbjct: 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 34.3 bits (78), Expect = 0.081
Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 1/142 (0%)
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKN 528
+D+ + E ++EA +++ Q+ + +Y L EE+ S +L+
Sbjct: 3 QDQIVKEDSVEAVGA-QLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETI 61
Query: 529 KELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEK 588
K E + + +E + E +E++ + + K E +L E+
Sbjct: 62 KIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRA 121
Query: 589 LSEERRLLTVRSAELEYELEQR 610
+ + R + R L+ +L Q
Sbjct: 122 QASDNREIDKRMNSLKPDLMQL 143
Score = 31.3 bits (70), Expect = 0.77
Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 3/164 (1%)
Query: 713 KEDRKTKEKDIAELKTKCEELTQQVTKLEAD---CQSYLNTIKNMENDERSTKHNQEKLL 769
++D+ KE + + + + QQ + +R+ + +
Sbjct: 2 QQDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETI 61
Query: 770 KIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRD 829
KI+E++ + + E + E ++L+ ++ + + +R
Sbjct: 62 KIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRA 121
Query: 830 LQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKIN 873
+ + +N+LK + + ++ + Q L + KIN
Sbjct: 122 QASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKIN 165
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 33.3 bits (76), Expect = 0.11
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
LK ++E++ ++ ++ L E E + KEL + L+ + +L+ +V +
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA 65
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
+ E K L++ + E + +++ +L ++ KL +E L +L
Sbjct: 66 DAEERCDQLIK--NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123
Query: 604 EYELE 608
E L
Sbjct: 124 ELTLA 128
Score = 27.5 bits (61), Expect = 8.8
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 422 QQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQ 481
+ + E + ++E+ E K + E +V Q ++D + + E A
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66
Query: 482 HKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRR 541
+ + L + +LEAK K +M+ +L++ N +L K ++LE + ++L R
Sbjct: 67 AEERCDQLIKNKIQLEAKVK-------EMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
Query: 542 VEEME 546
++++E
Sbjct: 120 IDDLE 124
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P,
endocytosis/exocytosis complex; 2.85A {Saccharomyces
cerevisiae} SCOP: a.118.17.2
Length = 235
Score = 33.8 bits (77), Expect = 0.16
Identities = 20/106 (18%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 582 LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLV 641
+ ++ ++ + L E++ EL + + AV + +++ +L+ + + +E L+
Sbjct: 4 MSRDMSSTAQRLKFLDEGVEEIDIELARLRFESAV--ETLLDIESQLEDLSERISDEELM 61
Query: 642 YERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSL 687
L+S K I Q + + S ++S S+++ L+ +N+ L
Sbjct: 62 LLNLISLK---IEQRREAISSKLSQSILSSNEIVHLKSGTENMIKL 104
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 34.4 bits (78), Expect = 0.16
Identities = 20/201 (9%), Positives = 60/201 (29%), Gaps = 16/201 (7%)
Query: 448 YKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLK-----IQNLKQELSELEAKYKS 502
T ++ L + Q + ++ + + + + +K +
Sbjct: 116 IHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSK 175
Query: 503 LSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLK 562
L + + KL+ L +NR L + LE + + ++ E + + + K
Sbjct: 176 LKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAE-----RLKRLQKSADLYK 230
Query: 563 SLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAE 622
L + + + + + + +YE+ + + E
Sbjct: 231 DRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAEFQE 290
Query: 623 ELQEKLDY------MENKFQE 637
+++ ++ + F
Sbjct: 291 NVRKTNNFSAFLANVRKAFTA 311
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 34.1 bits (77), Expect = 0.19
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
E + + L D K E + +QL+S++ K+ EE R +LE
Sbjct: 13 ESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLE 61
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 33.1 bits (75), Expect = 0.19
Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 489 LKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERG 548
+ + + +E + E KL+E + + K +E + + ++E E
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQE-- 58
Query: 549 AQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
++K K + ++A +++E ++ + S++E+ E L + AELE EL+
Sbjct: 59 -------IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111
Query: 609 QRDYLIAVKTDGAEELQEKLDYMENK 634
+ D EEL K ++EN+
Sbjct: 112 TVTNNLKSLEDKVEELLSKNYHLENE 137
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime
disease; NMR {Homo sapiens}
Length = 307
Score = 33.6 bits (76), Expect = 0.22
Identities = 39/288 (13%), Positives = 94/288 (32%), Gaps = 22/288 (7%)
Query: 352 WRESDIVFQERASGEMTDYFQGSHDDPYETIR-LLEARLAEFEGFDKKEFEYQIREEYRE 410
E A G DY + + LL +++ + E +++ E
Sbjct: 26 TEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSE 85
Query: 411 VQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSED 470
++E + EE + ++ + + D+E L+ QA
Sbjct: 86 LEEQLTPVAEETRARLSKELQAAQARLGADMEDVC-------GRLVQYRGEVQAMLGQST 138
Query: 471 ETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKE 530
E L KL+ + L ++ +L+ + + + + RE L ++
Sbjct: 139 EELRVRLASHLRKLRKR-LLRDADDLQKRLAVYQAGAREGAERGLSAIRER--LGPLVEQ 195
Query: 531 LEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLS 590
+ A + + + ++ + ++ E ++ ++R+++E+ +
Sbjct: 196 GRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQA 255
Query: 591 EE-RRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE 637
++ R A L+ E AE++Q + K Q
Sbjct: 256 QQIRLQAEAAQARLKSRFEPL----------AEDMQRQWAGQVEKVQA 293
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 33.8 bits (78), Expect = 0.23
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 485 KIQNLKQELSELEAK---YKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRR 541
+ Q L +E S LEA + + ED+SG L EL E D T N E ++ L +
Sbjct: 52 RAQALGKERSSLEAVVDTLDQMKQGLEDVSG-LLELAVEADDEETFN-EAVAELDALEEK 109
Query: 542 VEEME 546
+ ++E
Sbjct: 110 LAQLE 114
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.23
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 21/72 (29%)
Query: 2 GAEGTIE--------QPGIIPRTLNILFNSLGPYLDKSDVLFRPTYASNVSMLSKEDRVQ 53
GA G GIIP N +++ L++ + + P+ K D V+
Sbjct: 1387 GAAGAWMMNGALQILNSGIIPGNRNA--DNVDKILEQFEYVLYPSKT------LKTDGVR 1438
Query: 54 AFDVKKQILNSF 65
A + SF
Sbjct: 1439 AV-----SITSF 1445
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 33.9 bits (78), Expect = 0.29
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 451 QIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKY-----KSLSE 505
Q+ ++ ++Q + + + + IEAQ+ +K KQ L E+ + L+
Sbjct: 36 QLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIK-KQHLVEVRSMANPPAAVKLAL 94
Query: 506 EHEDMSGKL---------KELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPE 556
E + + REN N E + ++++ + N
Sbjct: 95 ESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYN--Y 152
Query: 557 EVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
E+ SL ++ + VE L E + L + + + +LE
Sbjct: 153 EIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEA 205
Score = 33.1 bits (76), Expect = 0.48
Identities = 24/191 (12%), Positives = 63/191 (32%), Gaps = 20/191 (10%)
Query: 714 EDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYE 773
E +++ IA+ + +E +V + Q+ + +IK E + N +K+
Sbjct: 35 EQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLAL 94
Query: 774 DR-----------LKAVQDELAE--MKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAEL 820
+ K ++ + + S E + + K+ S E+
Sbjct: 95 ESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEI 154
Query: 821 EQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAKI-----NI- 874
R ++ +K ++ ++E + + Q+ K + ++ +
Sbjct: 155 VNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPP 214
Query: 875 -DRSPSGEDTD 884
+P G +
Sbjct: 215 WPGAPVGGEEA 225
Score = 31.2 bits (71), Expect = 2.0
Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 19/199 (9%)
Query: 385 LEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEED---L 441
LEA LA E K++ I ++ V+ED K+ E + +N VK +++QH + +
Sbjct: 27 LEALLAVDEQLHKQQ--EVIADKQMSVKEDLDKV-EPAVIEAQNAVKSIKKQHLVEVRSM 83
Query: 442 ERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYK 501
K +E++ L+ + + +N + A+
Sbjct: 84 ANPPAAVKLALESIALLLGESTTDWKQIRS-----------IIMRENFIPTIVNFSAEEI 132
Query: 502 SLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMER-GAQTENKPEEVKY 560
S + + + + + + G + + + + E E++
Sbjct: 133 SDAIREKMKKNYMSNPSYNYEIVNRASLAA-GPMVKWAIAQLNYADMLKRVEPLRNELQK 191
Query: 561 LKSLLDEAKEEFKEQTTEI 579
L+ + +++ + ++
Sbjct: 192 LEDDAKDNQQKLEALLLQV 210
Score = 30.8 bits (70), Expect = 2.7
Identities = 19/193 (9%), Positives = 66/193 (34%), Gaps = 13/193 (6%)
Query: 578 EIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQE 637
++E L + E+L +++ ++ + ++ +L++ + + ++ A + +K +E +
Sbjct: 26 DLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAV-IEAQNAVKSIKKQHLVEVRSMA 84
Query: 638 ESLVYERLMSEKENL-ISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDK--- 693
+L E L + + D + R+ + + + + + +K K
Sbjct: 85 NPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNY 144
Query: 694 -----TIGDLKAKIHKYEKYYAVMK---EDRKTKEKDIAELKTKCEELTQQVTKLEADCQ 745
++ + + K + L+ + ++L + +
Sbjct: 145 MSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLE 204
Query: 746 SYLNTIKNMENDE 758
+ L +
Sbjct: 205 ALLLQVPLPPWPG 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.32
Identities = 7/30 (23%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 284 QRSLSGLSSTVKMIVNVNASPAYA-EETVQ 312
+++L L +++K+ + +++PA A + T++
Sbjct: 19 KQALKKLQASLKLYAD-DSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.57
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 22/49 (44%)
Query: 749 NTIKNMENDERSTKHNQEKLLKIYE-DRLKAVQDELAEMKCAQLKPSLE 796
+K ++ LK+Y D A LA +K ++E
Sbjct: 20 QALKKLQAS-----------LKLYADDSAPA----LA------IKATME 47
Score = 30.3 bits (67), Expect = 1.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 765 QEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAAT 801
+++ LK + LK D+ A P+L A AT
Sbjct: 18 EKQALKKLQASLKLYADDSA--------PAL-AIKAT 45
Score = 29.9 bits (66), Expect = 2.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 855 QQQQRSPLKGLENQMAKINIDRSPS 879
++Q LK L+ + D +P+
Sbjct: 18 EKQA---LKKLQASLKLYADDSAPA 39
Score = 29.5 bits (65), Expect = 3.1
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 15 RTLNILFNSLGPYLDKSDVLFRPTYASNVSM 45
+ L L SL Y D S P A +M
Sbjct: 20 QALKKLQASLKLYADDS----APALAIKATM 46
Score = 29.5 bits (65), Expect = 3.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 490 KQELSELEAKYK 501
KQ L +L+A K
Sbjct: 19 KQALKKLQASLK 30
Score = 29.5 bits (65), Expect = 3.3
Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 34/62 (54%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
E+Q +KKL + K Y DDS L AI+
Sbjct: 18 EKQA------LKKL--------QASLKLY----------------ADDSA-PAL---AIK 43
Query: 480 AQ 481
A
Sbjct: 44 AT 45
Score = 29.1 bits (64), Expect = 3.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 899 KKRQLKKPSTHL-----NSTAGLAENVNL 922
+K+ LKK L +S LA +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 33.6 bits (76), Expect = 0.34
Identities = 18/110 (16%), Positives = 40/110 (36%)
Query: 434 REQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQEL 493
+ D + + M + + + E E E + K K+Q LK
Sbjct: 298 VTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSE 357
Query: 494 SELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
+EL+ +++ + + E +L+E R+ D + + + Q +
Sbjct: 358 AELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRT 407
Score = 32.5 bits (73), Expect = 0.60
Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 406 EEYR--EVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQ 463
E YR ++ + + + L + EE E K K ++E +
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 464 AEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRD 523
+ ++ E+ ++ +H+ +NL+ + ELE K + +E + + + L ++N
Sbjct: 348 EKVQKLKDS--EAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSS 405
Query: 524 LVTKNKELEGKV 535
+ + +GK+
Sbjct: 406 RTLEKNKKKGKI 417
Score = 31.3 bits (70), Expect = 1.4
Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 380 ETIRLLEARLAEFEGFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEE 439
E R A++ + E ++ FE +++E+ ++ D E +++ EQ ++
Sbjct: 322 EERREHVAKMKKMEMEMEQVFEMKVKEK------------VQKLKDSEAELQRRHEQMKK 369
Query: 440 DLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKI 486
+LE Q K + + N +A+ ++ + +E K
Sbjct: 370 NLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 29.4 bits (65), Expect = 6.4
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 697 DLKAKIHK--YEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNM 754
DLK + YE Y + D K K + + ++E + + ++ +K M
Sbjct: 277 DLKDVTNNVHYENYRSRKLAAVTYNGVDNN--KNKGQLTKSPLAQMEEERREHVAKMKKM 334
Query: 755 ENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVN 814
E + E +K +LK + EL Q+K +LEA + R+Q ED+
Sbjct: 335 EMEMEQV---FEMKVKEKVQKLKDSEAELQRRH-EQMKKNLEAQHKELEEKRRQFEDEKA 390
Query: 815 SLKAE 819
+ +A+
Sbjct: 391 NWEAQ 395
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 33.3 bits (75), Expect = 0.38
Identities = 35/195 (17%), Positives = 78/195 (40%), Gaps = 28/195 (14%)
Query: 418 MFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESA 477
+ +E D+ N + KL+ E + + + M +++ + ++ D T N +
Sbjct: 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI-MEILRGDFSSANNRDNTYNRVS 112
Query: 478 IEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRE------------NRDLV 525
+ + + I+ LK+++ E + L + +K L + +R L
Sbjct: 113 EDLRSR--IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA 170
Query: 526 TK-----NKELEGKVAQLSRRVEEMERGAQTEN--KPEEVKYL-----KSLLDEAKEEFK 573
+ ++ + ++ Q+ + R Q K + V L KS L + E+K
Sbjct: 171 REVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKMKPVPDLVPGNFKSQLQKVPPEWK 230
Query: 574 EQTTEIEQLRSEVEK 588
T++ Q+R E+E+
Sbjct: 231 AL-TDMPQMRMELER 244
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 33.4 bits (76), Expect = 0.42
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 360 QERASG-----EMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYRE---- 410
ER +M + GS +E + +A F+K R+E +
Sbjct: 9 DERNKAEFDVEDMKIVWAGSRHA-FEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLR 67
Query: 411 -VQEDFRKMFEEQQTDWE 427
F+++ E + + E
Sbjct: 68 KCAHAFKRIIELRLNEEE 85
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 32.0 bits (72), Expect = 0.49
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 6/180 (3%)
Query: 565 LDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEEL 624
KEE + + ++ +E S ELE ELE + +L
Sbjct: 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDL 61
Query: 625 QEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNL 684
Q ++ + + E ++ +S L+ DL RA Q + L++ +L
Sbjct: 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121
Query: 685 GSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEK---DIAELKTKCEELTQQVTKLE 741
++ D + ++++ + A ++ + KE + LK + +L Q++ E
Sbjct: 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181
Score = 30.9 bits (69), Expect = 1.4
Identities = 23/169 (13%), Positives = 67/169 (39%), Gaps = 1/169 (0%)
Query: 484 LKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVE 543
+ +LK+E + + + ++ +L E +R+L + + + Q +R ++
Sbjct: 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQ 62
Query: 544 EMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAEL 603
+ + E + + K + ++ ++ ++ Q R+ E+L + R L + +L
Sbjct: 63 ADNQRLKYEVEALKEKL-EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENL 652
E + + E+ ++E++ E+ + + K+
Sbjct: 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEA 170
Score = 28.9 bits (64), Expect = 5.6
Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ 462
+ R+E E QE R++ E + EQ DL+ + K ++E L +++Q
Sbjct: 28 EARDELVEFQEGSRELEAELEAQLVQ-----AEQRNRDLQADNQRLKYEVEALKEKLEHQ 82
Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENR 522
A+ + L + +Q + + L + + ELE L L++ +
Sbjct: 83 YAQSYKQVSVLEDD--LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140
Query: 523 DLVTKNKELEGKVAQLSRRVEEMER 547
+ +N LE ++ + + ++R
Sbjct: 141 QAIERNAFLESELDEKESLLVSVQR 165
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 32.0 bits (72), Expect = 0.49
Identities = 25/182 (13%), Positives = 65/182 (35%), Gaps = 23/182 (12%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
K+ L+++L E ++ S+ + E+++ L + N+EL+ + L +
Sbjct: 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66
Query: 545 MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
++ ++ + +E R + SE L R L+
Sbjct: 67 TDK-----------------------DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQ 103
Query: 605 YELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNR 664
E++ + + +E Q+ L++ E + + + + + Q + + +
Sbjct: 104 EEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTK 163
Query: 665 AE 666
A
Sbjct: 164 AR 165
Score = 28.9 bits (64), Expect = 4.8
Identities = 19/138 (13%), Positives = 49/138 (35%)
Query: 420 EEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIE 479
+ + +LR+ H E + + E + ++ ++ + AI
Sbjct: 19 NDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78
Query: 480 AQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLS 539
+ + + + +L+A+ SL EE + + L+++ E ++ E + L
Sbjct: 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138
Query: 540 RRVEEMERGAQTENKPEE 557
+ + Q + E
Sbjct: 139 IDLNYKLKSLQQRLEQEV 156
Score = 28.2 bits (62), Expect = 9.5
Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 2/147 (1%)
Query: 534 KVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEER 593
K++QL +++EE + + L+ E + + + +L+ L +
Sbjct: 7 KLSQLQKQLEEAN--DLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64
Query: 594 RLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLI 653
+L+ LE ++ +LQ ++ ++ + + E++ E++
Sbjct: 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ 124
Query: 654 SQLKADLESNRAESNQSAHDEQALQKE 680
L + + ++LQ+
Sbjct: 125 DMLNHSEKEKNNLEIDLNYKLKSLQQR 151
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 32.4 bits (73), Expect = 0.52
Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 10/194 (5%)
Query: 403 QIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQ 462
+ + +++E + +E + E + LR++ +DLE + + ++ + +
Sbjct: 52 SVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEE 111
Query: 463 QAEDDSEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEH-EDMSGKLKELTREN 521
+ E L ++ + K+ L+++LS L + + + H + + L + E
Sbjct: 112 MELYRQKVEPLRAE-LQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 170
Query: 522 RDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE-IE 580
R + LE R+ E A E + L A E+ ++ +E
Sbjct: 171 RQRL--AARLEALKENGGARLAEYHAKAT-----EHLSTLSEKAKPALEDLRQGLLPVLE 223
Query: 581 QLRSEVEKLSEERR 594
+ EE
Sbjct: 224 SFKVSFLSALEEYT 237
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 33.3 bits (76), Expect = 0.55
Identities = 15/156 (9%), Positives = 45/156 (28%), Gaps = 16/156 (10%)
Query: 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGA 549
+ + ++ + E + RD V + R + +
Sbjct: 1786 NNMVDVIPMEFTDFIVPEVNKELVFTEPIQTIRDAVVN------ILIHFDRNFYQKMKVG 1839
Query: 550 QTENKP----EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEY 605
P + ++ L L+ ++ +E + +EKL+E + + L
Sbjct: 1840 VNPRSPGYFIDGLRALVKLVTAKYQDLQEN---QRFVNVGLEKLNESVLKVNELNKTLSI 1896
Query: 606 ELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLV 641
L + + + + ++ + ++
Sbjct: 1897 SLVK---SLTFEKERWLNTTKQFSKTSQELIGNCII 1929
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.6 bits (75), Expect = 0.58
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 673 DEQ--ALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKC 730
++ L+ ++ L K IG KED K + +L +
Sbjct: 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA-----------KEDAKDLIAEKEKLSNEK 87
Query: 731 EELTQQVTKLEADCQSYLNTIKNM 754
+E+ ++ + + + +S +N + N+
Sbjct: 88 KEIIEKEAEADKNLRSKINQVGNI 111
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Length = 488
Score = 32.4 bits (73), Expect = 0.83
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 571 EFKEQTTEIE--QLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK-TDGAEELQEK 627
F+ T + Q+R+ + KL++ +L A+ E EL+ L + + +
Sbjct: 3 AFESNTNSVAASQMRNALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTLE 62
Query: 628 LDYMENKFQEESLVYERLMSEKENLISQLKA 658
D +++ +E + YE + + EN+ + K
Sbjct: 63 WDKIKSPNPDEVVKYEIISQQPENVSNLSKL 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 29.2 bits (66), Expect = 0.85
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDL 524
K + LE K + LS + + ++ L E L
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55
>3hd7_A Vesicle-associated membrane protein 2; membrane protein,
coiled-coil, 4-helical bundle, cell juncti cytoplasmic
vesicle, membrane, phosphoprotein; HET: GGG; 3.40A
{Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Length = 91
Score = 29.9 bits (67), Expect = 0.88
Identities = 8/59 (13%), Positives = 29/59 (49%)
Query: 811 DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
++ +A++++ +++R K+L++ + ++ L + + Q Q + L+ +
Sbjct: 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 32.1 bits (73), Expect = 0.93
Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 12/199 (6%)
Query: 394 GFDKKEFEYQIREEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIE 453
GF +KE + E + Q E+ + VK + EE + +
Sbjct: 14 GFGQKEQTPEKETEVQNEQPV-----VEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFA 68
Query: 454 TLMTLVKNQQAEDDSEDETLN-ESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSG 512
+ V Q AE + + E + + + E EL E +
Sbjct: 69 ADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPL------PEDVNAEA 122
Query: 513 KLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF 572
E + + V + E + A+ EE+E E E V + +E E
Sbjct: 123 VSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEE 182
Query: 573 KEQTTEIEQLRSEVEKLSE 591
Q E +L
Sbjct: 183 IAQEQEKPTKEGFFARLKR 201
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 30.0 bits (68), Expect = 1.0
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 661 ESNRAESNQSAHDEQALQKEIKNLG---SLLVDKDKTIGDLKAKIHKYEK 707
S + S D ++ +K V TI LK +I + K
Sbjct: 2 SSGSSGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFK 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 32.0 bits (72), Expect = 1.1
Identities = 18/196 (9%), Positives = 54/196 (27%), Gaps = 13/196 (6%)
Query: 552 ENKPEEVKYLKSLLDEA----KEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYEL 607
+ E LLD +F E+ + V L +L L +
Sbjct: 318 QLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377
Query: 608 EQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAES 667
++D ++ + D + + S++ +R + + + + E
Sbjct: 378 GEQDIEPLLQ----AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKREL 433
Query: 668 NQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELK 727
+ + + ++ + + ++ + ++ +
Sbjct: 434 HTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPER-----IYQEFEGDNATWWNFD 488
Query: 728 TKCEELTQQVTKLEAD 743
+ E L +T +
Sbjct: 489 PRVEWLMGYLTSHRSQ 504
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 31.9 bits (71), Expect = 1.1
Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 11/190 (5%)
Query: 633 NKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKD 692
+ +++ + +I + L+ + Q ++ L +V
Sbjct: 68 DNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQL---DENYGHVSTELRRRIVTLK 124
Query: 693 KTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIK 752
+ + +I + + K E DI C+ + + D + Y N K
Sbjct: 125 QRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQK 184
Query: 753 NMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQ 812
++ H + + +++ ++D P +P +
Sbjct: 185 HLTQASSIDMHPDFQTTTLSTLKMRPLKDSNV--------PEHFKLKPSPEMQAMSAFNN 236
Query: 813 VNSLKAELEQ 822
+ ++ LE+
Sbjct: 237 IKQMQVVLER 246
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 31.8 bits (72), Expect = 1.5
Identities = 37/280 (13%), Positives = 84/280 (30%), Gaps = 30/280 (10%)
Query: 560 YLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ--------RD 611
Y +L E +E + E+ + S + Y+LE D
Sbjct: 26 YDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNLMTEGD 85
Query: 612 YLIAVKTDGAEELQ-------EKLDYMENKFQEESL-VYERLMSEKENLISQLKADLESN 663
I KTD E Q + + + E + E++ +K + + +
Sbjct: 86 MKIR-KTDIPERYQELRAGITDYGNMSSEDQELERNWIAEKISVDKNFDANYDLTEFKEA 144
Query: 664 RAESNQSAHDEQALQ-------KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDR 716
+ + E + + S D D I + + + +
Sbjct: 145 IGNAIKFITKENLEVPFIYAYRRNY--ISSREKDGFLLTEDDLWDIVSLDIEFHSLVNKK 202
Query: 717 KTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYED-- 774
++ AEL +T+ + LN+++++ + N+ + I
Sbjct: 203 DYVQRFYAELHIDDPIVTEYFKNQNTASIAELNSLQDIYDYLEFKYANEINEMFINHTGK 262
Query: 775 -RLKAVQDELAEM-KCAQLKPSLEASAATPSQYRKQLEDQ 812
K +++ E K + L ++ + + + Q
Sbjct: 263 TGKKHLKNSSYEKFKASPLYQAVSDIGISAEDVGENISSQ 302
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 31.1 bits (70), Expect = 1.5
Identities = 46/310 (14%), Positives = 104/310 (33%), Gaps = 34/310 (10%)
Query: 430 VKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNL 489
V L+E+ E + +++T+ L S+ T I
Sbjct: 41 VTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAAT-------------IAEW 87
Query: 490 KQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGA 549
K L+E A L + + EL + D ++ K +L
Sbjct: 88 KDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLP---------E 138
Query: 550 QTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
+ V+ L+ + + + + T++ QL+ + +L ++ +++ +
Sbjct: 139 ELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYA--GDKADDIQKRENE 196
Query: 610 RDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQ 669
D E + +L +KF+ S+V LM E++I Q++A +
Sbjct: 197 VLEAWKSLLDACESRRVRLVDTGDKFRFFSMV-RDLMLWMEDVIRQIEAQ---------E 246
Query: 670 SAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTK 729
D +++ + N + + D I + A + ++ + +L K
Sbjct: 247 KPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEK 306
Query: 730 CEELTQQVTK 739
+E+ +
Sbjct: 307 RKEMIDKWED 316
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 31.0 bits (69), Expect = 1.9
Identities = 29/226 (12%), Positives = 80/226 (35%), Gaps = 3/226 (1%)
Query: 636 QEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTI 695
+ + E++ + L+ A ++ +Q Q ++ + + +
Sbjct: 299 TIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANL 358
Query: 696 GDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNME 755
+ + I + E+ ++ ++ E+ EL+ + L + A+ Q + I+
Sbjct: 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIR--A 416
Query: 756 NDERSTKHNQEKLLKIYE-DRLKAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVN 814
E ++ QE LK E RL+ ++ + L A+ ++ + +
Sbjct: 417 KQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPD 476
Query: 815 SLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRS 860
A + DL + + + + E++++ Q ++
Sbjct: 477 HDNASDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKA 522
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 30.4 bits (69), Expect = 2.3
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 19/131 (14%)
Query: 613 LIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEK-ENLISQLKAD------------ 659
L++ + G E L+ +D + E + Y + + + ++L + +D
Sbjct: 148 LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQ 207
Query: 660 -LESNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKT 718
LE + + Q L + L + + D I D +Y+ A+ T
Sbjct: 208 MLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIAD-----ARYQCIAAICDVVSNT 262
Query: 719 KEKDIAELKTK 729
+ + T
Sbjct: 263 LTAEPSRFTTA 273
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 30.3 bits (69), Expect = 2.6
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 646 MSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLG-SLLVDKDKTIGDLKAKIHK 704
++E E I ++ D E+N AE+++ + + +N G LL K + + K+
Sbjct: 119 LNEDE--IQKMVRDAEAN-AEADRKFEELV----QTRNQGDHLLHSTRKQVEEAGDKLPA 171
Query: 705 YEKY---YAVMKEDRKTKEKDIAELKTKCEELTQQVTKL 740
+K A+ + K +D A ++ K +EL Q KL
Sbjct: 172 DDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKL 210
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 30.6 bits (69), Expect = 2.6
Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 4/118 (3%)
Query: 558 VKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVK 617
+ + + E KE +E++ E+ E + + LE E E+ +
Sbjct: 158 IDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEK----LTKF 213
Query: 618 TDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQ 675
+ ++++ + + S+ +
Sbjct: 214 VEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHA 271
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor,
chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Length = 258
Score = 30.2 bits (67), Expect = 2.6
Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 28/239 (11%)
Query: 647 SEKENLISQLKADLESNRAE------SNQSAHDEQALQKEIKNLGSLLV---------DK 691
I QL DL R +N ++ +
Sbjct: 18 GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPEN 77
Query: 692 DKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTI 751
K +G+L I Y+ M++ + + Q + L + +
Sbjct: 78 VKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEAD 137
Query: 752 KNMENDERSTKHNQEKLLKI-----------YEDRLKAVQDELAEMKCAQLKPSLEASAA 800
+ +++LL++ +A +L +L+
Sbjct: 138 SVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAA--LADTDNLKRQLP 195
Query: 801 TPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQR 859
+ +Q E+ V + + + Q + V ++ + ++ + + Q Q ++R
Sbjct: 196 SEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLERR 254
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 30.6 bits (70), Expect = 2.6
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 488 NLKQELSELEAKYKSLSEEHEDMS-----GKLKELTRENRDL---VTKNKELEGKVAQLS 539
N+ +L +E +Y+ L E D + EL+RE + V +E + Q+
Sbjct: 14 NIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYK----QVV 69
Query: 540 RRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
+ + + + + + E++ + AKEE K E+ ++ L
Sbjct: 70 QNIADAQEMIKDASGDPELEEM------AKEELKNSKVAKEEYEEKLRFL 113
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 30.0 bits (67), Expect = 2.9
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 413 EDFRKMFEEQQTDWEN--NVKKLREQHEEDLERQRKFYKT--QIETLMTLVKNQQAEDDS 468
QT W + E H ++ +F+ + E + ++ S
Sbjct: 83 PTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYS 142
Query: 469 EDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDM 510
D + + +E + Q+ K++L+E + L++ + +
Sbjct: 143 CDRSATVTRLEDLLQ-DAQDEKEQLNEYKGHLSGLAKRAKAV 183
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 3.0
Identities = 25/160 (15%), Positives = 43/160 (26%), Gaps = 60/160 (37%)
Query: 296 MIVNVNASPAYAEETVQVLKISSVARDLLTVAKPRHLPPPPRKKTRFSIMAARNLDWRES 355
M + VN Y+ E + +SV D P R ++ L +
Sbjct: 118 MAIQVN----YSSEVKE----NSVDSDDKAKVPPLI---------RI--VSGLELSDTKQ 158
Query: 356 D----IVFQERASGEMTDYFQGSHDDPYETIRLLEARLAEFEGFD--KKEFEYQIREEYR 409
+V + E P+E I + E +
Sbjct: 159 KGKKFLVI----AYE-----------PFENI-----------AIELPPNEILFS-ENNDM 191
Query: 410 EVQEDFRKMFEEQQTDWENNVK--------KLREQHEEDL 441
+ D ++ T W+ K K EQ + D+
Sbjct: 192 DNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQEQADV 231
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 30.1 bits (67), Expect = 3.3
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 483 KLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
K +++L+ ++ELE S+ + ++ L + + ++A + R
Sbjct: 11 KSSVESLQNRVTELE----SVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRF 66
Query: 543 EEME 546
+ +E
Sbjct: 67 QVLE 70
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.9 bits (66), Expect = 3.3
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 406 EEYREVQEDFRKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
E R+ +E+ RK +E + ++ RE+ ++DLE + Q+E KN+
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------KNKINN 153
Query: 466 DDSEDETLNE 475
++ +
Sbjct: 154 RIADKAFYQQ 163
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.3 bits (69), Expect = 3.6
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 806 RKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGL 865
+ ++N L+ E N + K +KGE ++ L A+ + ++ + + ++ L
Sbjct: 40 WRTKLKEINRLRHE----RNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95
Query: 866 ENQMAKI-----NI--DRSPSGEDTDD 885
+ ++ NI P G+D +D
Sbjct: 96 KKKIDYYLWRLPNITHPSVPVGKDEND 122
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 30.0 bits (68), Expect = 3.9
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 353 RESDIVFQERASGEMTD--YFQ-GSHDDPYETIRLLEARLAEFEGFDKKEFEYQ----IR 405
R D + + + Y +HD I L+ E G + FE+Q +R
Sbjct: 222 RLIDAEYLHLGKLALKEGLYVAFATHDPR--IIAELKR-YTEAMGIPRSRFEFQFLYGVR 278
Query: 406 EE-YREVQEDFRKM 418
E R + + +
Sbjct: 279 PEEQRRLAREGYTV 292
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 30.2 bits (69), Expect = 4.0
Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 30/115 (26%)
Query: 554 KPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQRDYL 613
PEE +D + + + E E L+ E + S+ER +E E+
Sbjct: 399 APEE-------IDALERKKLQLEIEREALKKEKDPDSQERL------KAIEAEIA----- 440
Query: 614 IAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESN 668
+L E++ + +++ E + +L + + +++ ++E AE
Sbjct: 441 ---------KLTEEIAKLRAEWEREREILRKLREAQHR-LDEVRREIE--LAERQ 483
Score = 29.8 bits (68), Expect = 5.6
Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 41/150 (27%)
Query: 483 KLKIQNLKQELSELEAKYKSLSE--EHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSR 540
+ +++ ++ E+++L + L E E R+++ K +E + ++ ++ R
Sbjct: 429 QERLKAIEAEIAKLTEEIAKLRAEWERE-------------REILRKLREAQHRLDEVRR 475
Query: 541 RVEEMERGAQTENKPEEVKY-----LKSLLDEAKEEFKEQTTEIEQLRSE---------- 585
+E ER N+ E++Y L++ ++ E+ + ++ E
Sbjct: 476 EIELAERQYDL-NRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWT 534
Query: 586 ---VEKL--SEERRLLTVRSAELEYELEQR 610
V KL E +LL LE EL +R
Sbjct: 535 GIPVSKLLEGEREKLL-----RLEEELHKR 559
Score = 29.8 bits (68), Expect = 5.8
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 774 DRLKAVQDELAEMKCAQLKPSLEASAATPSQYR--KQLEDQVNSLKAELEQ-RHNVVR-- 828
+RLKA++ E+A++ E A +++ +++ ++ + L++ R +
Sbjct: 430 ERLKAIEAEIAKLT--------EEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAE 481
Query: 829 ---DLQ-LKLLQKGEMINNLKAQMEKSQQQQQQQR 859
DL L+ GE + L+A++E ++ + R
Sbjct: 482 RQYDLNRAAELRYGE-LPKLEAEVEALSEKLRGAR 515
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 30.2 bits (69), Expect = 4.0
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 519 RENRDLV-----TKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEF- 572
RE D V T++KEL V ++ +++ R ++ L+S ++ +E
Sbjct: 8 REKPDYVKERLATRDKELVSLVDKV-LELDKRRREIIKR-----LEALRSERNKLSKEIG 61
Query: 573 --KEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQ 609
K + + ++++ V++L EE L ++E EL+
Sbjct: 62 KLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100
Score = 29.8 bits (68), Expect = 4.8
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 675 QALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELT 734
+AL+ E +N S K IG LK + +D + + ELK + + L
Sbjct: 47 EALRSE-RNKLS------KEIGKLKRE-----------GKDTTEIQNRVKELKEEIDRLE 88
Query: 735 QQVTKLEADCQSYLNTIKNMENDE 758
+++ K+E + ++ L I N+ +
Sbjct: 89 EELRKVEEELKNTLLWIPNLPHPS 112
Score = 29.8 bits (68), Expect = 5.0
Identities = 15/87 (17%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 806 RKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGL 865
R+++ ++ +L++E N + KL ++G+ ++ ++++ +++ + L+ +
Sbjct: 39 RREIIKRLEALRSE----RNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKV 94
Query: 866 ENQMAKI-----NI--DRSPSGEDTDD 885
E ++ N+ P GED D
Sbjct: 95 EEELKNTLLWIPNLPHPSVPVGEDEKD 121
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 30.2 bits (68), Expect = 4.1
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 360 QERASG-----EMTDYFQGSHDDPYETIRLLEARLAEFEGFDKKEFEYQIREEYRE---- 410
+ERAS +T GS ++ R +E + F +++ + R + E
Sbjct: 7 KERASATFNPELITHILDGSPEN-TRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVK 65
Query: 411 -VQEDFRKMFEEQQTD 425
+KM E +D
Sbjct: 66 KSATMVKKMREYGISD 81
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.1 bits (66), Expect = 4.2
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 468 SEDETLNESAIEAQHKLKIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTK 527
+ L E++ L+ E ++L + EE K+ +E L K
Sbjct: 11 EMERLLREAS---------SILRVEPAKLPKTVERFFEE-------WKDQRKEIERL--K 52
Query: 528 NKELEGKVAQLSRRVEEMERGAQ--TENKPEEVKYLKSLLDEAKEE 571
+ + L R EE + + E +++ L+ L + E+
Sbjct: 53 SVIADLWADILMERAEEFD-SMKVVAEVVDADMQALQKLAERLAEK 97
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.9 bits (67), Expect = 4.2
Identities = 29/305 (9%), Positives = 87/305 (28%), Gaps = 27/305 (8%)
Query: 522 RDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQ 581
++ ++ + V R ++++ AQ L S E+ ++++
Sbjct: 40 IVMLKRHLRQQRAVEDYGRNIKQLASRAQG---------LLSAGHPEGEQIIRLQGQVDK 90
Query: 582 LRSEVEKLSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLV 641
+ ++ ++EER+ +LE ++L++ + E +
Sbjct: 91 HYAGLKDVAEERK------RKLENMYHLFQLK-----RETDDLEQWISEKELVASSPEMG 139
Query: 642 YERLMSEKENLISQLKADLESNRAESNQSAHDEQALQKEIKNLGSLLVDK-DKTIGDLKA 700
+ L + + A + + A + + + G + L
Sbjct: 140 QD--FDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNE 197
Query: 701 KIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERS 760
+ + D+ E+ + + + + +
Sbjct: 198 MWADLLEL-IDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHR 256
Query: 761 TKHNQEKLLKIYEDRLKAVQD---ELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLK 817
E+ + + +++ QD L + +++ S + L D +
Sbjct: 257 VHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRR 316
Query: 818 AELEQ 822
+L
Sbjct: 317 TQLVD 321
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 29.8 bits (68), Expect = 4.7
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 28/116 (24%)
Query: 485 KIQNLKQELSELEAKYKSLSEE--HEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRV 542
K+ L++E ELEA LS+ +D + + L+R ++ G+V L R
Sbjct: 4 KLDRLEEEYRELEAL---LSDPEVLKDKG-RYQSLSRRYAEM--------GEVIGLIREY 51
Query: 543 EEMERGAQTENKPEEVKYLKSLLD--EAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
++ E+++ +SLLD E KE K E E L + E L +E
Sbjct: 52 RKVL---------EDLEQAESLLDDPELKEMAKA---EREALLARKEALEKELERH 95
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 29.3 bits (65), Expect = 4.9
Identities = 32/245 (13%), Positives = 88/245 (35%), Gaps = 9/245 (3%)
Query: 619 DGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
D + D ++F E+ + + + ++K + A N ++ L+
Sbjct: 17 DDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELE 76
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
+ + ++ + ++ I + E + R ++ + L K E+ +
Sbjct: 77 ELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLR-IRKTQHSTLSRKFVEVMSEYN 135
Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEAS 798
++D + + + E+L + E A+ M + K +L
Sbjct: 136 ATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQAL--- 192
Query: 799 AATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858
+ ++ L+ + + H++ D+ + + +GEMI+ ++ +E + ++
Sbjct: 193 -----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 247
Query: 859 RSPLK 863
S K
Sbjct: 248 VSDTK 252
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 27.7 bits (62), Expect = 4.9
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 681 IKNLG----SLLVDKDKTIGDLKAKIHKYEKYYAVM 712
+KN + ++ + I LK +I +
Sbjct: 12 VKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQ 47
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 28.0 bits (63), Expect = 4.9
Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 589 LSEERRLLTVRSAELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSE 648
+ + + + + E R E++ +E+ +E R++++
Sbjct: 1 MHHHHHHSSRENLYFQGQKESRA------------CLERIQELEDLLAKEKDNSRRMLTD 48
Query: 649 KENLISQLKADLESNRAESNQSAHDEQALQKEI 681
KE +++++ ++ + Q + AL EI
Sbjct: 49 KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 4.9
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 367 MTDYFQGSHDDPYETIRL--LEARLAEFEGFDKKEFEYQIR---------EEYREVQEDF 415
M D + +H YE R LE + D K F Q E ++ +E+
Sbjct: 283 MEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEM 342
Query: 416 RKMFEEQQTDWENNVKKLREQHEEDLERQRKFYKTQIETLMTLVKNQQAE 465
R+MF ++ + E +K+ ++ E +R +K ++ + + L K+ E
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDE 392
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 29.4 bits (67), Expect = 5.0
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query: 487 QNLKQELSELEAKYKSLSEEHEDMS-----GKLKELTRENRDLVTKNKELEGKVAQLSRR 541
++ +L L +++ + D + + L+RE L ++ +
Sbjct: 3 PSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQL----SDVSRCFTDWQQV 58
Query: 542 VEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKL 589
E++E + PE + + A++E +E + EQL +++ L
Sbjct: 59 QEDIETAQMMLDDPE-------MREMAQDELREAKEKSEQLEQQLQVL 99
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure,
northeast structural genomics consortium, protein
structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 27.7 bits (62), Expect = 5.0
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 681 IKNLG----SLLVDKDKTIGDLKAKIHKYEKYYAVM 712
++N + V +T+ LK ++ E +
Sbjct: 9 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 44
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 29.5 bits (65), Expect = 5.0
Identities = 28/245 (11%), Positives = 77/245 (31%), Gaps = 9/245 (3%)
Query: 622 EELQEKLDYME---NKFQEESLVYERLMSEKENLISQLKADLESNRAESNQSAHDEQALQ 678
+E + N+ + +E L+ + D++ +
Sbjct: 24 GVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMS 83
Query: 679 KEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEELTQQVT 738
++ ++ + A + + A+M + KE+D+ E+ T E
Sbjct: 84 STLQQFSKVI----DELSSCHAVLST-QLADAMMFPITQFKERDLKEILTLKEVFQIASN 138
Query: 739 KLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLKPSLEAS 798
+A Y K END+ + ++ + + + + + + Q K +
Sbjct: 139 DHDAAINRYSRLSKKRENDKVKYEVTED-VYTSRKKQHQTMMHYFCALNTLQYKKKIALL 197
Query: 799 AATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQ 858
+ Q+ + EQ + ++ + +++ M+++ + +
Sbjct: 198 EPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVA 257
Query: 859 RSPLK 863
PL
Sbjct: 258 SDPLY 262
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 28.7 bits (63), Expect = 5.2
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 486 IQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
+ + ++ ELE K ++L + S T ++L K K LE + Q S+
Sbjct: 2 VWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRA 61
Query: 546 ERGAQT-ENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELE 604
+ E E + ++LL AK E + ++E EQL E KL EE+++ L
Sbjct: 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLR 121
Query: 605 YELEQ 609
+L+
Sbjct: 122 RDLDA 126
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle,
transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Length = 106
Score = 27.9 bits (62), Expect = 5.2
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELT 518
+++ L Q+L +L+ + L + +L+ L+
Sbjct: 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 29.4 bits (65), Expect = 5.4
Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 717 KTKEKDIAELKTKCEELTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRL 776
+TK++ E + + T+L+ + + YL IK M+ ++ E L ++YE
Sbjct: 34 ETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQE---ASMKLTESLHEVYEPDW 90
Query: 777 KAVQDELAEMKCAQLKPSLEASAATPSQYRKQLEDQVNSLKAELEQRHNVVRDLQLKLLQ 836
+D +K E + ++L D + +++ K +
Sbjct: 91 YGRED---------VKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSR 141
Query: 837 KGEMINNLKAQMEKSQQQQQQQRSPLKGLENQMAK 871
K ++ + +E Q +++ S + E + K
Sbjct: 142 KLVDYDSARHHLEALQSSKRKDESRISKAEEEFQK 176
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex; 2.95A
{Loligo pealei} SCOP: h.1.15.1
Length = 80
Score = 27.2 bits (60), Expect = 5.6
Identities = 10/59 (16%), Positives = 28/59 (47%)
Query: 811 DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
++ +A++E+ +++R K+L++ I+ L + + Q Q + L+ +
Sbjct: 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 28.6 bits (63), Expect = 5.9
Identities = 24/151 (15%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEE 544
++ + S LE + + ++ + D T +EL + ++ R E+
Sbjct: 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRED 66
Query: 545 MERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTE-IEQLRSEVEKLSEERRLLTVRSAEL 603
+ + + K EE D+ +E ++ T ++ + V +E+ + + + L
Sbjct: 67 IAKENELRTKAEEEA------DKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL 120
Query: 604 EYELEQRDYLIAVKTDGAEELQEKLDYMENK 634
+L ++D L+ T + L++ + ++N+
Sbjct: 121 TEQLREKDTLLDTLTLQLKNLKKVMHSLDNE 151
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 29.0 bits (64), Expect = 6.2
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 435 EQHEEDLERQRKFYKTQIETLMTLVKNQQAEDDSEDETLNESAIEAQHKLKIQNLKQELS 494
+H + R+F I+ L+ ++ +Q E+ + + ++K Q +K++ S
Sbjct: 87 MRHRSIEAKLRQFSSALIDCLINPLQ-EQMEEWKKVANQLDKDHAKEYKKARQEIKKKSS 145
Query: 495 ELEAKYKSLSEEHEDMSGKL-KELTRENRDLVTKNKELEGKVAQLSRRVEEMERG 548
+ K + G + +L +D+ K LE Q R+ ERG
Sbjct: 146 DTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERG 200
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.1 bits (65), Expect = 6.4
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 105 YRFSNIYGPHTTQAELFQNIVHNMLERYLNGED 137
YR+ N++G + +++ + E+
Sbjct: 128 YRWPNLFGKW--CKPNYNSVIATFCYKIARNEE 158
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Mus musculus}
Length = 74
Score = 27.1 bits (60), Expect = 6.5
Identities = 11/60 (18%), Positives = 32/60 (53%)
Query: 810 EDQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
D++ ++ ++++ +V+++ K++++GE ++ L+ + E + K L QM
Sbjct: 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint,
cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens}
SCOP: h.1.22.1
Length = 100
Score = 27.8 bits (61), Expect = 6.6
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 504 SEEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKS 563
EE + + K++EL E L + + LE ++ R Q + K L
Sbjct: 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQL---------ERRALQGDYDQSRTKVLHM 61
Query: 564 LLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLL 596
L+ + + QL++E E+L R +
Sbjct: 62 SLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 28.2 bits (63), Expect = 6.7
Identities = 1/36 (2%), Positives = 10/36 (27%), Gaps = 4/36 (11%)
Query: 681 IKNLG----SLLVDKDKTIGDLKAKIHKYEKYYAVM 712
+ +V++ + + ++ +
Sbjct: 5 EAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEI 40
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 29.2 bits (66), Expect = 6.8
Identities = 4/55 (7%), Positives = 11/55 (20%), Gaps = 7/55 (12%)
Query: 106 RFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYV 160
R+ I + + + E + + Y+
Sbjct: 163 RYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCY-------LAPNRALPMMYM 210
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.1 bits (65), Expect = 6.9
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 707 KYYAVMKEDRKTKEKDIAE---------LKTKCEELTQQVTKLEADCQSYLNTIKNMEND 757
K Y +M K + LK + K + ++ N I+ + N+
Sbjct: 154 KVYEIMVLAPSEKPVTWTKQEIFFGPCLLKEQSAIFKS---KWRHEANTWQNIIQTISNN 210
Query: 758 ERSTKHNQEKLLKIYEDRLKAVQDELAEMK 787
+ + NQ K+ ++ E ++ V+D L E
Sbjct: 211 QPVSTENQAKIREL-EHKIALVEDVLKEGH 239
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia
coli} SCOP: a.8.7.1
Length = 213
Score = 28.6 bits (63), Expect = 7.2
Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 21/219 (9%)
Query: 673 DEQALQKEIKNLGSLLVDKDKTIGDLKAKIHKYEKYYAVMKEDRKTKEKDIAELKTKCEE 732
+ L K+ + L + + + LK+++ + Y M K ++ +L
Sbjct: 6 NPTELIKQGEQLEQMA----QQLEQLKSQLETQKNMYESM-----AKTTNLGDLLGTSTN 56
Query: 733 LTQQVTKLEADCQSYLNTIKNMENDERSTKHNQEKLLKIYEDRLKAVQDELAEMKCAQLK 792
L + + + N + T + + + E +L
Sbjct: 57 TLANN--LPDNWKEVYSDAMN--SSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLA 112
Query: 793 PSLEASAATPSQYRKQLEDQVNSLKAELEQRHNV-----VRDLQLKLLQKGEMINNLKAQ 847
+ +++ ++A EQ + + DLQ ++ I +A+
Sbjct: 113 EKGAYDRVMAEKAYNNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQAK 172
Query: 848 MEKSQQQQQQQRSPLKGLENQMAKINIDRSPSGEDTDDP 886
+ QQ Q K L Q + +
Sbjct: 173 LNLMNMLQQSQD---KLLRAQKDRATRNFVFGTGGDVTA 208
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana}
Length = 94
Score = 27.4 bits (61), Expect = 7.2
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 681 IKNLGS---LLVDKDKTIGDLKAKIHKYEKY--------YA--VMKEDRKT 718
+K + VD+ +T+ LK KIH E Y+ + +D +
Sbjct: 20 VKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRN 70
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase
family 9, phosphotransfer, transferase two-component
system; 2.30A {Rhodopseudomonas palustris}
Length = 164
Score = 28.5 bits (63), Expect = 7.2
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEMERGAQTENKPEEVKYLKSL 564
+ + L R ++ N E + +L + V+
Sbjct: 51 DSYIRARDALAARLDGLRAVLADNPEQIAHIDELRLLTDMRMAQLG-----RVVELGPER 105
Query: 565 LDEAKEEFKEQT--TEIEQLRSEVEKL-SEERRLLTVRSAELE 604
+ EA + ++ E++ + + L E+ LL R ++ +
Sbjct: 106 MREALDILEQARVDRLTERIETSLSVLTRAEQALLIQRLSKHD 148
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 28.1 bits (62), Expect = 7.4
Identities = 10/48 (20%), Positives = 26/48 (54%)
Query: 485 KIQNLKQELSELEAKYKSLSEEHEDMSGKLKELTRENRDLVTKNKELE 532
+I +LK EL + K +S ++E +++ ++ + + L T+ + +
Sbjct: 90 EIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDSK 137
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin,
SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil;
1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 61
Score = 26.6 bits (59), Expect = 7.5
Identities = 10/59 (16%), Positives = 27/59 (45%)
Query: 811 DQVNSLKAELEQRHNVVRDLQLKLLQKGEMINNLKAQMEKSQQQQQQQRSPLKGLENQM 869
+ L+AE++ ++RD K+ ++GE + +++ + + Q + + M
Sbjct: 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.1 bits (66), Expect = 7.7
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 106 RFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYV 160
R+ N+YGP ++ ++ + NGE LF + F D YV
Sbjct: 166 RYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF-----EGSENFKR-DFVYV 214
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 28.5 bits (64), Expect = 8.0
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 556 EEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELE 608
EEV+ K +DE +E + ++ R + ++ S ++R + +
Sbjct: 1 EEVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPG 53
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 29.0 bits (65), Expect = 8.0
Identities = 11/44 (25%), Positives = 13/44 (29%)
Query: 543 EEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEV 586
EME A EN E E E +R E+
Sbjct: 144 AEMEYVAIRENLRREQDRPCVRDGEDFGASIPDFVTPEFVRQEI 187
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 27.0 bits (60), Expect = 8.1
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 681 IKNLG----SLLVDKDKTIGDLKAKIHKYEKYYAVM 712
++N + V +T+ LK ++ E +
Sbjct: 9 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 44
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 28.4 bits (63), Expect = 8.3
Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 5/156 (3%)
Query: 542 VEEMERGAQTENKPEEVKYLKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSA 601
E + + E + + L +A++ +E E + + ++ + L +
Sbjct: 4 AELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRI 63
Query: 602 ELEYELEQRDYLIAVKTDGAEELQEKLDYMENKFQEESLVYERLMSEKENLISQLKADLE 661
LE R +A++ + + E++ E+ Y + + L+ + +L
Sbjct: 64 IANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDE--YFESV---KALLKEAIKELN 118
Query: 662 SNRAESNQSAHDEQALQKEIKNLGSLLVDKDKTIGD 697
+ + + I+ + S L D +G+
Sbjct: 119 EKKVRVMSNEKTLGLIASRIEEIKSELGDVSIELGE 154
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 28.5 bits (63), Expect = 8.3
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 681 IKNLG----SLLVDKDKTIGDLKAKIHKYEKY 708
+K L +++ ++ DLK++I + +
Sbjct: 5 VKTLEGETKIYTLEQGTSVLDLKSQISQDMGF 36
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.2 bits (66), Expect = 8.6
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 519 RENRDLVTKN----------------KELEGKVAQLSRRVEEM--ERGAQTENKPEEVKY 560
+ + ++ QL ++ + E+ A TE V+
Sbjct: 47 CAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTE----AVRA 102
Query: 561 LKSLLDEAKEEFKEQTTEIEQLRSEVEKLSEERRLLTVRSAELEYELEQR 610
L D ++ + + + LR+ ++ ++ LL + A+LE + R
Sbjct: 103 LVVNQDNSQVQQDP---QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein
structur initiative, northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 101
Score = 27.3 bits (61), Expect = 8.6
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 661 ESNRAESNQSAHDEQALQKEIKNLG---SLLVDKDKTIGDLKAKIHKYEK 707
S+ E+ + ++ +K V ++ ++ K +I K K
Sbjct: 10 HSSGRENLYFQGHPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFK 59
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 28.8 bits (65), Expect = 8.7
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 106 RFSNIYGPHTTQAELFQNIVHNMLERYLNGEDALLFSFGTTNSGKT---FT-IQDLTYVN 161
R+ N+YGP ++ ++ + NGE LF G S F + D+ VN
Sbjct: 213 RYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF-EG---SENFKRDFVYVGDVADVN 268
Query: 162 VHSCEEA 168
+ E
Sbjct: 269 LWFLENG 275
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 26.2 bits (58), Expect = 9.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 505 EEHEDMSGKLKELTRENRDLVTKNKELEGKVAQLSRRVEEM 545
E E ++G+ KEL ++N L + L ++ L +EE+
Sbjct: 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV 63
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin,
ubiquitin-like domain, structural genomics, signaling
protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Length = 100
Score = 27.3 bits (61), Expect = 9.3
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 681 IKNLG---SLLVDKDKTIGDLKAKIHKYEK 707
+K V TI LK +I + K
Sbjct: 27 VKTPKDKEDFSVTDTCTIQQLKEEISQRFK 56
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 26.8 bits (60), Expect = 9.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 681 IKNLG----SLLVDKDKTIGDLKAKIHKYEKY 708
++NL L VD T+ +K KI + +
Sbjct: 15 VENLNGSSFELEVDYRDTLLVVKQKIERSQHI 46
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 28.7 bits (65), Expect = 9.6
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 17/58 (29%)
Query: 106 RFSNIYGPHTTQAELFQN---IVHNMLERYLNGEDALLFSFGTTNSGKTFTIQDLTYV 160
RF+++YG + + +++ + +GE L + ++ Y
Sbjct: 159 RFAHLYGFN-------EKNNYMINRFFRQAFHGEQLTLHANSV-------AKREFLYA 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.345
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,270,753
Number of extensions: 806833
Number of successful extensions: 3530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3007
Number of HSP's successfully gapped: 687
Length of query: 932
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 830
Effective length of database: 3,853,851
Effective search space: 3198696330
Effective search space used: 3198696330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.2 bits)