BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16995
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
           Domain Of The Human Drug Metabolizing
           Udp-Glucuronosyltransferase 2b7
 pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
           Domain Of The Human Drug Metabolizing
           Udp-Glucuronosyltransferase 2b7
          Length = 170

 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 11/84 (13%)

Query: 86  AKPLPPDLDKYM-SDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVE 144
           AKPLP + + ++ S   +GV+ FS G+ V  +N      N    + ++I QK+LW+ D  
Sbjct: 4   AKPLPKEXEDFVQSSGENGVVVFSLGSXV--SNXTEERANVIASALAQIPQKVLWRFDGN 61

Query: 145 VEVPPNVLVRN-----WFPQADIL 163
               P+ L  N     W PQ D+L
Sbjct: 62  ---KPDTLGLNTRLYKWIPQNDLL 82


>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
 pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
           Blueprint For Antibiotic Engineering
          Length = 424

 Score = 30.8 bits (68), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/18 (72%), Positives = 13/18 (72%)

Query: 146 EVPPNVLVRNWFPQADIL 163
           EVPPNV V  W PQ DIL
Sbjct: 302 EVPPNVEVHQWVPQLDIL 319


>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
           Glycostyltransferase, Tdp Bound Form
 pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
           Glycostyltransferase, Tdp And Calicheamicin Alpha3i
           Bound Form
 pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
           Glycostyltransferase, Tdp And Calicheamicin Alpha3i
           Bound Form
          Length = 412

 Score = 29.6 bits (65), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 11/80 (13%)

Query: 92  DLDKYMS--DAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV---- 145
           DL  ++S  D    +++ + GT+   +     VL A ++  + +   +L  +   +    
Sbjct: 230 DLPAWLSSRDTARPLVYLTLGTS---SGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286

Query: 146 --EVPPNVLVRNWFPQADIL 163
             EVP NV + +W PQA +L
Sbjct: 287 LGEVPANVRLESWVPQAALL 306


>pdb|2PSO|A Chain A, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
 pdb|2PSO|B Chain B, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
 pdb|2PSO|C Chain C, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
          Length = 237

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 138 LWKTDVEVEVPPNVLV 153
           LWK  VEVE PP+V++
Sbjct: 76  LWKASVEVEAPPSVVL 91


>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
           Repeat- Containing Protein 6
 pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
           Repeat- Containing Protein 6
          Length = 323

 Score = 26.6 bits (57), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1   MNFW-GRLDSLWFAVTDLFLTNLFYYPKQVALMDKYFKYPGYQ 42
           +N W GR +  W   T  FL  L      + + + YF  PGY+
Sbjct: 173 LNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYE 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,338,656
Number of Sequences: 62578
Number of extensions: 210391
Number of successful extensions: 639
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 7
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)