RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16995
         (165 letters)



>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
           enzyme, nucleotide binding,
           sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
           sapiens}
          Length = 170

 Score =  103 bits (258), Expect = 1e-28
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 84  KHAKPLPPDLDKYMSDA-PHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTD 142
             AKPLP +++ ++  +  +GV+ FS G+ V   NM     N    + ++I QK+LW+ D
Sbjct: 2   NAAKPLPKEMEDFVQSSGENGVVVFSLGSMVS--NMTEERANVIASALAQIPQKVLWRFD 59

Query: 143 VEV--EVPPNVLVRNWFPQADIL 163
                 +  N  +  W PQ D+L
Sbjct: 60  GNKPDTLGLNTRLYKWIPQNDLL 82


>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
           glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
           UDP; 1.7A {Streptomyces antibioticus}
          Length = 430

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 14/141 (9%)

Query: 32  MDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPP 91
            + + K  G    P         S+  +   +     +       F G      A+    
Sbjct: 166 FEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEEGGW 225

Query: 92  DLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKT-------DVE 144
                       V+  S G+        P      V +F  +    L             
Sbjct: 226 QR----PAGAEKVVLVSLGSAF---TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAEL 278

Query: 145 VEVPPNVLVRNWFPQADILET 165
            E+P NV V +W PQ  IL  
Sbjct: 279 GELPDNVEVHDWVPQLAILRQ 299


>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
           glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
           {Streptomyces antibioticus}
          Length = 424

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 13/104 (12%)

Query: 68  PQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFV 127
              +  N  F G  +   +     +           V+  + G+               +
Sbjct: 225 GDTVGDNYTFVGPTYGDRSHQGTWEG----PGDGRPVLLIALGSA---FTDHLDFYRTCL 277

Query: 128 ESFSKIKQKILWKTDVEV------EVPPNVLVRNWFPQADILET 165
            +   +   ++      V      EVPPNV V  W PQ DIL  
Sbjct: 278 SAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTK 321


>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
           {Micromonospora echinospora}
          Length = 402

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 13/104 (12%)

Query: 68  PQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFV 127
            +       F G       +   P            V+  S G      N  P    A  
Sbjct: 201 AETFDERFAFVGPTL--TGRDGQPGWQP--PRPDAPVLLVSLGN---QFNEHPEFFRACA 253

Query: 128 ESFSKIKQKILWKTDVEV------EVPPNVLVRNWFPQADILET 165
           ++F+     ++      +       +PPNV    W P   +L  
Sbjct: 254 QAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH 297


>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
           initiative, center for eukaryotic structural genomics;
           HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
           3iaa_A*
          Length = 415

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 68  PQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFV 127
                   +F G       +    +  +   D P  V+  S GT     N  P       
Sbjct: 217 GDTFDDRFVFVGPCF--DDRRFLGEWTRPADDLP--VVLVSLGT---TFNDRPGFFRDCA 269

Query: 128 ESFSKIKQKILWKTDVEV------EVPPNVLVRNWFPQADILET 165
            +F      ++     +V      ++PPNV    W P   +LE 
Sbjct: 270 RAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVLEQ 313


>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
           initiative, center for eukaryotic structural genomics,
           CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
           PDB: 3oth_A*
          Length = 412

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 73  PNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSK 132
           P       +       LP  L    +  P  +++ + GT    +     VL A ++  + 
Sbjct: 215 PRRHELRPVPFAEQGDLPAWLSSRDTARP--LVYLTLGT---SSGGTVEVLRAAIDGLAG 269

Query: 133 IKQKIL----WKTDVEV--EVPPNVLVRNWFPQADILET 165
           +   +L       DV    EVP NV + +W PQA +L  
Sbjct: 270 LDADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPH 308


>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
           {Saccharopolyspora erythraea}
          Length = 441

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 88  PLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKT-----D 142
            +P  L     +     +  + G + R  ++    +   + +   +  +I+        +
Sbjct: 256 VVPEWLHD---EPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLE 312

Query: 143 VEVEVPPNVLVRNWFPQADILET 165
               +P NV    + P   +L T
Sbjct: 313 GVANIPDNVRTVGFVPMHALLPT 335


>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
           orientalis} SCOP: c.87.1.5
          Length = 415

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 46  PMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVI 105
             +         ++  D  +   Q    + + TG   +   +PL P+L  ++   P   +
Sbjct: 183 EDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGP-PPV 241

Query: 106 FFSFGTNVRFANMPPYVLNAFVESFSKIKQKIL----WKTDVEVEVPPNVLVRNWFPQAD 161
           +  FG+       P   +   +++     ++++    W   V  +   +           
Sbjct: 242 YLGFGS----LGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQV 297

Query: 162 IL 163
           + 
Sbjct: 298 LF 299


>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
           teicoplanin, ORF1, natural products, antibiotic; HET:
           UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
           1pn3_A* 1pnv_A*
          Length = 404

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 68  PQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFV 127
            +      + TG   +   +PL  +L+ ++       ++  FG+    A          +
Sbjct: 188 LRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGS-PPVYVGFGSGPAPAEA----ARVAI 242

Query: 128 ESFSKIKQKIL----WKTDVEVEVPPNVLVRNWFPQADIL 163
           E+     ++++    W     ++   + LV        + 
Sbjct: 243 EAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF 282


>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
           glycopeptide, VACO antibiotic, transferase-antibiotic
           complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
           {Amycolatopsis orientalis} SCOP: c.87.1.5
          Length = 416

 Score = 35.2 bits (81), Expect = 0.005
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 77  FTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQK 136
            TG   +   +PLPP+L+ +++      +   FG++              VE+     ++
Sbjct: 213 QTGAWLLSDERPLPPELEAFLAAGS-PPVHIGFGSSSGRG--IADAAKVAVEAIRAQGRR 269

Query: 137 IL----WKTDVEVEVPPNVLVRNWFPQADIL 163
           ++    W   V  +   +    +      + 
Sbjct: 270 VILSRGWTELVLPDDRDDCFAIDEVNFQALF 300


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.016
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 48/144 (33%)

Query: 4   WGRLDSLWFAVTDLFLTNLFY--YPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEH 61
           W   +S +F      +T LF+       A       YP     P +++         LE+
Sbjct: 289 W---ES-FFVSVRKAITVLFFIGVRCYEA-------YPNTSLPPSILE-------DSLEN 330

Query: 62  DISIGVPQALTPNMLFTGGM-------HIKHA-KPLPPDLDKYMS--DAP-HGVIFFSFG 110
           +   GVP   +P ML    +       ++      LP      +S  +   + V+  S G
Sbjct: 331 NE--GVP---SP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--S-G 381

Query: 111 TNVRFANMPPYVLNAFVESFSKIK 134
                   PP  L     +  K K
Sbjct: 382 --------PPQSLYGLNLTLRKAK 397



 Score = 31.2 bits (70), Expect = 0.15
 Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 19/67 (28%)

Query: 42  QSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAP 101
           QSR P  +     S  FL     +  P        F       H+  L P  D    D  
Sbjct: 404 QSRIPFSERKLKFSNRFLP----VASP--------F-------HSHLLVPASDLINKDLV 444

Query: 102 HGVIFFS 108
              + F+
Sbjct: 445 KNNVSFN 451


>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
           1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
          Length = 391

 Score = 33.2 bits (76), Expect = 0.024
 Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 21/75 (28%)

Query: 104 VIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV-------------EVPPN 150
            +    G  V  A  P  +L A   +             VE              ++P N
Sbjct: 220 RVCICMGRMVLNATGPAPLLRAVAAATEL--------PGVEAVIAVPPEHRALLTDLPDN 271

Query: 151 VLVRNWFPQADILET 165
             +    P    L T
Sbjct: 272 ARIAESVPLNLFLRT 286


>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
           initiative, center for eukaryotic structural genomics,
           CESG fold; HET: TYD C0T; 1.60A {Micromonospora
           echinospora} PDB: 3d0q_A* 3d0r_A*
          Length = 398

 Score = 31.3 bits (71), Expect = 0.13
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 25/91 (27%)

Query: 88  PLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV-- 145
            L   L   +   P   +  + GT    A      +   + +  +         D +   
Sbjct: 221 VLGDRLPP-VPARP--EVAITMGTIELQAF-GIGAVEPIIAAAGE--------VDADFVL 268

Query: 146 -----------EVPPNVLVRNWFPQADILET 165
                       +P NV    W P   +L T
Sbjct: 269 ALGDLDISPLGTLPRNVRAVGWTPLHTLLRT 299


>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
           enzyme discovery for natural product biosynthesis,
           natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
          Length = 398

 Score = 30.8 bits (70), Expect = 0.18
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 19/91 (20%)

Query: 88  PLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEV-- 145
            +P  +     +     +  +FGT  R        +   +     + Q  L K   EV  
Sbjct: 216 QVPSWVF---EERKQPRLCLTFGT--RVPLPNTNTIPGGLSLLQALSQ-ELPKLGFEVVV 269

Query: 146 -----------EVPPNVLVRNWFPQADILET 165
                       +P  VL    FP + I+  
Sbjct: 270 AVSDKLAQTLQPLPEGVLAAGQFPLSAIMPA 300


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 1.2
 Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 18/46 (39%)

Query: 84  KHA-KPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVE 128
           K A K L   L  Y  D+               A  P   + A +E
Sbjct: 19  KQALKKLQASLKLYADDS---------------A--PALAIKATME 47


>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
           HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
           3udx_A* 3ue0_A* 3ue1_A*
          Length = 731

 Score = 28.4 bits (64), Expect = 1.4
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 10/53 (18%)

Query: 85  HAKPLPPDLDKYMSDAP------HGVIFFSFG----TNVRFANMPPYVLNAFV 127
           H          +M   P         +   +G      V +  +PP  ++AF+
Sbjct: 4   HHHHENLYFQSHMLLKPLQVYTADNQLIAEYGGKLSIPVEYKQIPPNFIHAFL 56


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 2.3
 Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 51/154 (33%)

Query: 16  DLFLTNLFYYPKQV----ALMDKYFKYPGYQSRPPMVDMLRNISM--------TFLEHDI 63
            +F   L  +P        L+   +          +V+ L   S+        T     I
Sbjct: 373 KMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 64  SIGVPQALTPNMLFTGGMHIK------------HAKPLPPDLDKYMSDAPHGVIFFSF-- 109
            +     L   +     +H                  +PP LD+Y         F+S   
Sbjct: 432 YL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---------FYSHIG 478

Query: 110 ------GTNVRFANMPPYVLNAFVESFSKIKQKI 137
                     R        L+     F  ++QKI
Sbjct: 479 HHLKNIEHPERMTLFRMVFLD-----FRFLEQKI 507



 Score = 26.0 bits (56), Expect = 7.4
 Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 24/61 (39%)

Query: 89  LPPDLDK--YMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVE 146
           L P   +  +            F  +    ++P  +L             ++W   ++ +
Sbjct: 366 LEPAEYRKMFDR-------LSVFPPSA---HIPTILL------------SLIWFDVIKSD 403

Query: 147 V 147
           V
Sbjct: 404 V 404


>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
           1.88A {Streptomyces fradiae}
          Length = 384

 Score = 27.1 bits (60), Expect = 3.1
 Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 9/84 (10%)

Query: 88  PLPPDLDKYMSDAPHGVIFFSFGT--NVRFANMPPYVLNAFVESFSKIKQKIL----WKT 141
           PL P +    +      +  + G+       +     L    +   +   +++       
Sbjct: 199 PLEPWMY---TRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTV 255

Query: 142 DVEVEVPPNVLVRNWFPQADILET 165
              +          W P   +  T
Sbjct: 256 AEALRAEVPQARVGWTPLDVVAPT 279


>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
           GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
           {Medicago truncatula} PDB: 3hbj_A*
          Length = 454

 Score = 26.0 bits (58), Expect = 6.4
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 20/123 (16%)

Query: 57  TF--LEHDISIGVPQALTPNMLFTGGMHIKHAKPLPPDLDKYMS--DA--PHGVIFFSFG 110
           +F  +   I      +    +L  G  ++   +    D    +   D      V++ SFG
Sbjct: 223 SFATIHPLI-ENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFG 281

Query: 111 TNVRFANMPPYVLNAFVESFSKIKQKILW--KTDVEVEVPPNVLVR--------NWFPQA 160
           +       PP+ L A  ES  +     +W  + D + ++P   L R         W PQ 
Sbjct: 282 S---VVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQV 338

Query: 161 DIL 163
           +IL
Sbjct: 339 EIL 341


>2olv_A Penicillin-binding protein 2; transpeptidase fold,
           glycosyltransferase family 51, lysozyme transferase;
           HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10
           e.3.1.1 PDB: 2olu_A* 3dwk_A*
          Length = 669

 Score = 25.8 bits (57), Expect = 7.7
 Identities = 3/18 (16%), Positives = 9/18 (50%)

Query: 110 GTNVRFANMPPYVLNAFV 127
             +V   ++P  + +A +
Sbjct: 36  HEHVNLKDVPKSMKDAVL 53


>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
           binding fold, structural genomics, PSI; HET: NAD; 1.90A
           {Methanothermobacter thermautotrophicusorganism_taxid}
           SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
           1m8k_A*
          Length = 181

 Score = 25.7 bits (56), Expect = 7.8
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 52  RNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPH-GVIFFSFG 110
             ++    E+ I       +    +    + + H K L P  D+  S  P    +F   G
Sbjct: 57  MMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDG 116

Query: 111 TNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVEVPPNVL 152
             V     PP          +++++++L   D    +P +V+
Sbjct: 117 YEVTA---PPLFYRDRYSG-TEVRRRMLDDGDWRSLLPESVV 154


>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer,
           transport protein; HET: HEM; 1.90A {Campylobacter jejuni
           subsp} SCOP: c.150.1.1
          Length = 268

 Score = 25.5 bits (55), Expect = 8.8
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 24  YYPKQVALMDKYFKYPGYQSRPPMVDM--LRNISMTFLEHDISIGVPQALTPNMLFTGGM 81
                ++L  K       +    +V++   ++  M       +  +   +   +L  G  
Sbjct: 170 QLFDIISLSHKLNPEENKELLDKLVEIQQFKDRRM-------ADVLVHHVNKVLLLAGSY 222

Query: 82  HIKHAKPLPPDLDKYMSDAPHGVIFFSFG 110
           H      +P  +  + S     V+  S+G
Sbjct: 223 HTSKKIGIPLHIQDFKSSKKIVVVNLSYG 251


>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
           PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
           3ac0_A*
          Length = 845

 Score = 25.6 bits (56), Expect = 9.0
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)

Query: 85  HAKPLP----PDLDKYMSDAPHGVIFFSFGTNVRFANMPP 120
           H K +     P +   +SD P+G+    F   V     P 
Sbjct: 29  HTKKIERLGIPAV--RVSDGPNGIRGTKFFDGVPSGCFPN 66


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,678,509
Number of extensions: 151793
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 29
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)