RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16995
(165 letters)
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 49.7 bits (117), Expect = 3e-08
Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 1/153 (0%)
Query: 11 WFAVTDLFLTNLFYYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISIGVPQA 70
+ + N ++ + + + ++ D + Q
Sbjct: 148 TIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQP 207
Query: 71 LTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESF 130
+ + TG + +PL P+L ++ P ++ FG+ A+ ++A
Sbjct: 208 TDLDAVQTGAWILPDERPLSPELAAFLDAGPP-PVYLGFGSLGAPADAVRVAIDAIRAHG 266
Query: 131 SKIKQKILWKTDVEVEVPPNVLVRNWFPQADIL 163
++ W V + + +
Sbjct: 267 RRVILSRGWADLVLPDDGADCFAIGEVNHQVLF 299
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 49.3 bits (116), Expect = 3e-08
Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 2/145 (1%)
Query: 20 TNLFYYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTG 79
N ++ + G + D +L D + + + TG
Sbjct: 141 YNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYT-DQPWLAADPVLSPLRPTDLGTVQTG 199
Query: 80 GMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNV-RFANMPPYVLNAFVESFSKIKQKIL 138
+ +PL +L+ +++ V ++ A+ + A S +I
Sbjct: 200 AWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRG 259
Query: 139 WKTDVEVEVPPNVLVRNWFPQADIL 163
W V + + V ++
Sbjct: 260 WADLVLPDDGADCFVVGEVNLQELF 284
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 43.9 bits (102), Expect = 2e-06
Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 5/143 (3%)
Query: 23 FYYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMH 82
+ + +++ G + + + + + TG
Sbjct: 161 RFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQ--PDVDAVQTGAWL 218
Query: 83 IKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRF--ANMPPYVLNAFVESFSKIKQKILWK 140
+ +PLPP+L+ ++ A + FG++ A+ + A ++ W
Sbjct: 219 LSDERPLPPELEAFL-AAGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWT 277
Query: 141 TDVEVEVPPNVLVRNWFPQADIL 163
V + + + +
Sbjct: 278 ELVLPDDRDDCFAIDEVNFQALF 300
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 31.7 bits (70), Expect = 0.040
Identities = 22/175 (12%), Positives = 50/175 (28%), Gaps = 16/175 (9%)
Query: 1 MNFWGRLDSLWFAVTDLFLTNLFYYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLE 60
+ + R + + + F+ K ++ F + + +I
Sbjct: 192 IVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPL 251
Query: 61 HDISIGVPQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPP 120
TP + + K LD S P V++ +FG+
Sbjct: 252 PS-----LLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQL 306
Query: 121 YVLNAFVESF-----------SKIKQKILWKTDVEVEVPPNVLVRNWFPQADILE 164
+ + I +++ ++ E+ L+ +W PQ +L
Sbjct: 307 LEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLN 361
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 27.8 bits (60), Expect = 0.75
Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 32/191 (16%)
Query: 1 MNFWGRLDSLWFAVTDLFLTNLFYYPKQVALMDKYFKYPGYQSRPPMVDMLRNISMTFLE 60
+ G + D K + K +K ++ N
Sbjct: 164 LMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKAL-- 221
Query: 61 HDISIGVPQALTPNMLFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPP 120
+ + P L G L + V++ SFG+ +
Sbjct: 222 QEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGS---GGTLTC 278
Query: 121 YVLNAFVESFSKIKQKILWKTD---------------------------VEVEVPPNVLV 153
LN + +Q+ LW +E ++
Sbjct: 279 EQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVI 338
Query: 154 RNWFPQADILE 164
W PQA +L
Sbjct: 339 PFWAPQAQVLA 349
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein
Ffh {Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 25.0 bits (55), Expect = 2.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 49 DMLRNISMTFLEHDISIGVPQALTPNM 75
LR I ++ D+++ V + +
Sbjct: 29 ATLREIRRALMDADVNLEVARDFVERV 55
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli
[TaxId: 562]}
Length = 160
Score = 25.6 bits (56), Expect = 2.2
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 84 KHAK-PLPPDLDKYMSDAPHGV 104
K+AK LP ++ Y++D + +
Sbjct: 67 KNAKAQLPDEVISYINDPRNDI 88
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 439
Score = 26.1 bits (56), Expect = 2.8
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 49 DMLRNISMTF--LEHDISIGVPQALTPNMLFTG 79
+ ++ T + S +P + + F+G
Sbjct: 406 TLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSG 438
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 25.8 bits (56), Expect = 3.0
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 66 GVPQALTPNMLFTGGM----HIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPP 120
G + PN T G ++ +P K +D I++S +R N+P
Sbjct: 309 GAIKMSGPNNHVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPK 367
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 25.2 bits (54), Expect = 4.1
Identities = 16/84 (19%), Positives = 26/84 (30%)
Query: 76 LFTGGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQ 135
L+T M P D D+++ HG ++ N+ L F + S+
Sbjct: 40 LWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQDGSRTPG 99
Query: 136 KILWKTDVEVEVPPNVLVRNWFPQ 159
VEV L +
Sbjct: 100 HPERFVTPGVEVTTGPLGQGIANA 123
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 24.9 bits (53), Expect = 4.2
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 4/125 (3%)
Query: 31 LMDKYFKYPGYQSRPPMVDMLRNISMTFLEHDISIGVPQALTPNMLFTGGMHIKHAKPLP 90
+ D+ R + L E + + + L + K L
Sbjct: 26 IFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLVDYLKKHGIKVLV 85
Query: 91 ---PDLDKYMSDAPHGVIFFSFGTNVRFANMPPYVLNAFVESFSKIKQKILWKTDVEVEV 147
+ Y + + +++ + +F+ S S +K+ L+ DV V
Sbjct: 86 RGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISS-SLVKEVALYGGDVTEWV 144
Query: 148 PPNVL 152
PP V
Sbjct: 145 PPEVA 149
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Monoraphidium braunii [TaxId: 34112]}
Length = 89
Score = 24.0 bits (51), Expect = 6.0
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 79 GGMHIKHAKPLPPDLDKYMSDAPHGVIFFSFGTNVRFANMPPY 121
GG ++ L + D + + MP +
Sbjct: 22 GGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPAW 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.453
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 669,201
Number of extensions: 30538
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 21
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)