BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16996
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8DYE2|TRPCG_DROME Transient receptor potential cation channel trpm OS=Drosophila
melanogaster GN=trpm PE=1 SV=1
Length = 2023
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 97/119 (81%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKCEGVRETYDNGLKLFLDKEDL 62
VWMFQRFTVVMEY+QKP LPPPFI L H +KY RK +G+ DNGLKLFL+K+DL
Sbjct: 1172 VWMFQRFTVVMEYQQKPVLPPPFIALCHFYSLLKYCVRKAKGLEVQRDNGLKLFLEKDDL 1231
Query: 63 ERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQ 121
ERLYDFEEECVEG+F E+E L STDER++NTTERVE ++QK+EDINQKEN Q +++Q
Sbjct: 1232 ERLYDFEEECVEGFFHEQEIILNQSTDERVKNTTERVETMSQKIEDINQKENIQTATVQ 1290
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 20/87 (22%)
Query: 139 SGITDELETVCGLLSPPRSPRLLSPPVPGEIPPPSAISGGPTARNFRRCRHASEMSNPEM 198
+ ITDELE+VC +++ SP + P + P +EMS E
Sbjct: 1602 TSITDELESVCHMIA---SPTVSLPSNKASLDRPK-----------------TEMSRAEA 1641
Query: 199 AVYLEKEHLRDAEESDYHLMEEIIHTR 225
A LEK+HL++ EE+DY ++E +I +R
Sbjct: 1642 AALLEKKHLKECEENDYMILEGLIESR 1668
>sp|Q2WEA5|TRPM1_RAT Transient receptor potential cation channel subfamily M member 1
OS=Rattus norvegicus GN=Trpm1 PE=2 SV=1
Length = 1628
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKC----EGVRETYDNGLKLFLD 58
VW FQR+ ++M + +P LPPP IILSHI + + L +C EG +E D GLKLFL
Sbjct: 1140 VWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIVMRLSGRCRKKREGDQEERDRGLKLFLS 1199
Query: 59 KEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNS 118
E+L++L++FEE+CV+ +FREKE + S+DERIR T+ERVEN++ ++E+IN++EN +
Sbjct: 1200 DEELKKLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERENFMKA 1259
Query: 119 SIQVMSSLAFLRTTLVAFWNSGITDELETVCGL 151
S+Q + LR + + + + LE + G+
Sbjct: 1260 SLQTVD----LRLSQLEELSGRMVGALENLAGI 1288
>sp|Q9HCF6|TRPM3_HUMAN Transient receptor potential cation channel subfamily M member 3
OS=Homo sapiens GN=TRPM3 PE=2 SV=4
Length = 1732
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 90/124 (72%), Gaps = 3/124 (2%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYL---RRKCEGVRETYDNGLKLFLDK 59
VW FQR+ ++M + ++P LPPP II SH+ + ++L RK E + D GLKLF+
Sbjct: 1151 VWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHLCCRWRKHESDPDERDYGLKLFITD 1210
Query: 60 EDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSS 119
++L++++DFEE+C+E YFREK+ + S DERIR T+ERVEN++ ++E++N++E+S +S
Sbjct: 1211 DELKKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKAS 1270
Query: 120 IQVM 123
+Q +
Sbjct: 1271 LQTV 1274
>sp|Q2TV84|TRPM1_MOUSE Transient receptor potential cation channel subfamily M member 1
OS=Mus musculus GN=Trpm1 PE=2 SV=2
Length = 1622
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKC----EGVRETYDNGLKLFLD 58
VW FQR+ ++M + +P LPPP IILSHI + I L +C EG +E D GLKLFL
Sbjct: 1134 VWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLS 1193
Query: 59 KEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNS 118
E+L++L++FEE+CV+ +FREKE + S+DERIR T+ERVEN++ ++E+IN++EN +
Sbjct: 1194 DEELKKLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERENFMKT 1253
Query: 119 SIQVMSSLAFLRTTLVAFWNSGITDELETVCGL 151
S+Q + LR + + + + LE + G+
Sbjct: 1254 SLQTVD----LRLSQLEELSGRMVSALENLAGI 1282
>sp|Q7Z4N2|TRPM1_HUMAN Transient receptor potential cation channel subfamily M member 1
OS=Homo sapiens GN=TRPM1 PE=1 SV=2
Length = 1603
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKC----EGVRETYDNGLKLFLD 58
VW FQR+ ++M + +P LPPP IILSHI + I L +C EG +E D GLKLFL
Sbjct: 1089 VWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKLFLS 1148
Query: 59 KEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNS 118
E+L+RL++FEE+CV+ +FREKE + S+DERIR T+ERVEN++ ++E+IN++E +
Sbjct: 1149 DEELKRLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERETFMKT 1208
Query: 119 SIQVMSSLAFLRTTLVAFWNSGITDELETVCGL 151
S+Q + LR + ++ + + LE + G+
Sbjct: 1209 SLQTVD----LRLAQLEELSNRMVNALENLAGI 1237
>sp|Q923J1|TRPM7_MOUSE Transient receptor potential cation channel subfamily M member 7
OS=Mus musculus GN=Trpm7 PE=1 SV=1
Length = 1863
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHIL-LFIKYLRRKCEGVRETYDNGLKLFLDKED 61
VW +QR+ +M Y +KP LPPP IILSHI+ LF +R+ ++ +G KLFL +ED
Sbjct: 1110 VWKYQRYHFIMAYHEKPVLPPPLIILSHIVSLFCCVCKRR---KKDKTSDGPKLFLTEED 1166
Query: 62 LERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQ 121
++L+DFEE+CVE YF EK+ K ++ERIR T ERVE ++ +++++ + N S+Q
Sbjct: 1167 QKKLHDFEEQCVEMYFDEKDDKFNSGSEERIRVTFERVEQMSIQIKEVGDRVNYIKRSLQ 1226
Query: 122 VMSS 125
+ S
Sbjct: 1227 SLDS 1230
>sp|Q925B3|TRPM7_RAT Transient receptor potential cation channel subfamily M member 7
OS=Rattus norvegicus GN=Trpm7 PE=1 SV=2
Length = 1862
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHIL-LFIKYLRRKCEGVRETYDNGLKLFLDKED 61
VW +QR+ +M Y +KP LPPP IILSHI+ LF +R+ ++ +G KLFL +ED
Sbjct: 1110 VWKYQRYHFIMAYHEKPVLPPPLIILSHIVSLFCCICKRR---KKDKTSDGPKLFLTEED 1166
Query: 62 LERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQ 121
++L+DFEE+CVE YF EK+ K ++ERIR T ERVE ++ +++++ + N S+Q
Sbjct: 1167 QKKLHDFEEQCVEMYFDEKDDKFNSGSEERIRVTFERVEQMSIQIKEVGDRVNYIKRSLQ 1226
Query: 122 VMSS 125
+ S
Sbjct: 1227 SLDS 1230
>sp|Q96QT4|TRPM7_HUMAN Transient receptor potential cation channel subfamily M member 7
OS=Homo sapiens GN=TRPM7 PE=1 SV=1
Length = 1865
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 4/124 (3%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHIL-LFIKYLRRKCEGVRETYDNGLKLFLDKED 61
VW +QR+ +M Y +KP LPPP IILSHI+ LF +R+ ++ +G KLFL +ED
Sbjct: 1110 VWKYQRYHFIMAYHEKPVLPPPLIILSHIVSLFCCICKRR---KKDKTSDGPKLFLTEED 1166
Query: 62 LERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQ 121
++L+DFEE+CVE YF EK+ K ++ERIR T ERVE + +++++ + N S+Q
Sbjct: 1167 QKKLHDFEEQCVEMYFNEKDDKFHSGSEERIRVTFERVEQMCIQIKEVGDRVNYIKRSLQ 1226
Query: 122 VMSS 125
+ S
Sbjct: 1227 SLDS 1230
>sp|Q8CIR4|TRPM6_MOUSE Transient receptor potential cation channel subfamily M member 6
OS=Mus musculus GN=Trpm6 PE=2 SV=1
Length = 2028
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRK-CEGVRETYDNGLKLFLDKED 61
+W + R+ +M Y QKP LPPPFI+L+H+ L ++ L + +E D GLKL+L K+D
Sbjct: 1089 LWKYNRYRYIMTYHQKPWLPPPFILLNHLCLLLRGLCCRPAPQDQEEGDGGLKLYLTKDD 1148
Query: 62 LERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQK 112
L++L+DFEE+CVE YF EK L S +E+IR T+ERV + +++++N+K
Sbjct: 1149 LKKLHDFEEQCVEKYFHEKTEGLNCSFEEQIRMTSERVSEMFFQLKEMNEK 1199
>sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation channel subfamily M member 6
OS=Homo sapiens GN=TRPM6 PE=1 SV=2
Length = 2022
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 7/114 (6%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKC----EGVRETYDNGLKLFLD 58
+W + R+ +M Y +KP LPPP I+LSH+ L LRR C +E D GLKL+L
Sbjct: 1083 LWKYNRYRYIMTYHEKPWLPPPLILLSHVGLL---LRRLCCHRAPHDQEEGDVGLKLYLS 1139
Query: 59 KEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQK 112
KEDL++L+DFEE+CVE YF EK + S +ERIR T+ERV + +++++N+K
Sbjct: 1140 KEDLKKLHDFEEQCVEKYFHEKMEDVNCSCEERIRVTSERVTEMYFQLKEMNEK 1193
>sp|Q93971|TRPG_CAEEL Transient receptor potential channel OS=Caenorhabditis elegans
GN=gon-2 PE=1 SV=4
Length = 2032
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRK--CEGVRE---TYDNGLKLFL 57
+W+FQR+ VMEYE P LPPP L H +L ++++R + C +E +D LKLFL
Sbjct: 1569 IWLFQRYKQVMEYESTPFLPPPLTPLYHGVLILQFVRTRLSCSKSQERNPMFDFSLKLFL 1628
Query: 58 DKEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKEN 114
D + +E+L+DFEE+C+E R+K + S ++RI R + I ++ D+ KE+
Sbjct: 1629 DNDQIEKLHDFEEDCMEDLARQKLNEKNTSNEQRILRADIRTDQILNRLIDLQAKES 1685
>sp|Q9NZQ8|TRPM5_HUMAN Transient receptor potential cation channel subfamily M member 5
OS=Homo sapiens GN=TRPM5 PE=2 SV=1
Length = 1165
Score = 61.6 bits (148), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 4 WMFQRFTVVMEYEQKPALPPPFIILSHILLFI-KYLRRKCEGVRETYDNGLKLFLDKEDL 62
W FQR+ +++EY ++PAL PPFI+LSH+ L + + +++ E RE + L LD
Sbjct: 993 WKFQRYNLIVEYHERPALAPPFILLSHLSLTLRRVFKKEAEHKREHLERDLPDPLD---- 1048
Query: 63 ERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKE 113
+++ +E E + + E + S E +R T RV+ I + + + ++E
Sbjct: 1049 QKVVTWETVQKENFLSKMEKRRRDSEGEVLRKTAHRVDFIAKYLGGLREQE 1099
>sp|Q9JJH7|TRPM5_MOUSE Transient receptor potential cation channel subfamily M member 5
OS=Mus musculus GN=Trpm5 PE=1 SV=1
Length = 1158
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 4 WMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYL-RRKCEGVRETYDNGLKLFLDKEDL 62
W FQR+ +++EY +PAL PPFI+LSH+ L +K + R++ + R+ + L LD
Sbjct: 992 WKFQRYHLIVEYHGRPALAPPFILLSHLSLVLKQVFRKEAQHKRQHLERDLPDPLD---- 1047
Query: 63 ERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQV 122
+++ +E E + E + S E +R T RV+ I + + + ++E
Sbjct: 1048 QKIITWETVQKENFLSTMEKRRRDSEGEVLRKTAHRVDLIAKYIGGLREQEKRIKCLESQ 1107
Query: 123 MSSLAFLRTTLVAFWNSGITDELETVCGLLSPPRSPR 159
+ L +++ G T CG S P S R
Sbjct: 1108 ANYCMLLLSSMTDTLAPGGTYSSSQNCGCRSQPASAR 1144
>sp|O94759|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2
OS=Homo sapiens GN=TRPM2 PE=1 SV=2
Length = 1503
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKCEGVRETYDNGLKLFLDKEDL 62
+W FQR ++ EY +PA PPPFI+LSH+ LFIK + K R LK L+K +
Sbjct: 1062 IWKFQRHDLIEEYHGRPAAPPPFILLSHLQLFIKRVVLKTPAKRH---KQLKNKLEKNEE 1118
Query: 63 ERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENI 102
L +E E Y + ++ + +++I + + +V+ +
Sbjct: 1119 AALLSWEIYLKENYLQNRQFQQKQRPEQKIEDISNKVDAM 1158
>sp|Q9ESQ5|TRPM4_RAT Transient receptor potential cation channel subfamily M member 4
OS=Rattus norvegicus GN=Trpm4 PE=1 SV=2
Length = 1208
Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 4 WMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKCEGVRETYDNGLKLF---LDKE 60
W QR++++ E+ +PAL PP II+SH+ L K+LRR C + F L KE
Sbjct: 1052 WKAQRYSLIREFHSRPALAPPLIIISHLRLLFKWLRR-CHRTNLPASPVFEHFRVCLSKE 1110
Query: 61 DLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQ 111
L +E E + + S ER++ T+++V+ +++ I +
Sbjct: 1111 AERTLLTWESVHKENFLLAQARDKRDSDSERLKRTSQKVDTALKQLGQIRE 1161
>sp|Q7TN37|TRPM4_MOUSE Transient receptor potential cation channel subfamily M member 4
OS=Mus musculus GN=Trpm4 PE=1 SV=1
Length = 1213
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 4 WMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKCEGVRETYDNG-----LKLFLD 58
W QR++++ E+ +PAL PP II+SH+ L IK+LRR R ++ L
Sbjct: 1054 WKAQRYSLIREFHSRPALAPPLIIISHVRLLIKWLRRCRRCRRANLPASPVFEHFRVCLS 1113
Query: 59 KEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQ 111
KE +L +E E + + S ER++ T+++V+ +++ I +
Sbjct: 1114 KEAERKLLTWESVHKENFLLAQARDKRDSDSERLKRTSQKVDTALKQLGQIRE 1166
>sp|Q8TD43|TRPM4_HUMAN Transient receptor potential cation channel subfamily M member 4
OS=Homo sapiens GN=TRPM4 PE=1 SV=1
Length = 1214
Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 4 WMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKCEGVRETYD--NGLKLFLDKED 61
W QR+ ++ E+ +PAL PPFI++SH+ L ++ L R+ + + +++L KE
Sbjct: 1058 WKAQRYRLIREFHSRPALAPPFIVISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEA 1117
Query: 62 LERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKE 113
+L +E E + + S ER++ T+++V+ +++ I + E
Sbjct: 1118 ERKLLTWESVHKENFLLARARDKRESDSERLKRTSQKVDLALKQLGHIREYE 1169
>sp|O43052|RGA1_SCHPO Rho-type GTPase-activating protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rga1 PE=1 SV=1
Length = 1150
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 161 LSPPVPGEIPPPS---AISGGPTARNFRRCRHASEMSNPEMAVYLEKEHLRDAEESDYHL 217
+SP P IP PS I T +NF RH S ++ E L + H
Sbjct: 18 VSPTPPKRIPVPSRQNKIEENSTTKNFPHSRHTSTVAGTEGGSSLSRRHTSAESRKALPN 77
Query: 218 MEEIIHTRFNNKEAGSDADKFDNNAFFLTVNEETASEIRAN 258
+++ + NKE + D + F V + ++S+I A+
Sbjct: 78 QQQLAQSGLLNKEEQQSLKRSDTSVFPKAVRKVSSSKICAS 118
>sp|Q7Z2W7|TRPM8_HUMAN Transient receptor potential cation channel subfamily M member 8
OS=Homo sapiens GN=TRPM8 PE=1 SV=2
Length = 1104
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFI 35
VW FQR+ +V EY + +P PFI+ ++ + +
Sbjct: 993 VWKFQRYFLVQEYCSRLNIPFPFIVFAYFYMVV 1025
>sp|Q8R4D5|TRPM8_MOUSE Transient receptor potential cation channel subfamily M member 8
OS=Mus musculus GN=Trpm8 PE=1 SV=3
Length = 1104
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFI 35
VW FQR+ +V EY + +P PF++ ++ + +
Sbjct: 993 VWKFQRYFLVQEYCNRLNIPFPFVVFAYFYMVV 1025
>sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel subfamily M member 8
OS=Rattus norvegicus GN=Trpm8 PE=1 SV=4
Length = 1104
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 3 VWMFQRFTVVMEYEQKPALPPPFIILSHILLFI 35
VW FQR+ +V EY + +P PF++ ++ + +
Sbjct: 993 VWKFQRYFLVQEYCNRLNIPFPFVVFAYFYMVV 1025
>sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR
PE=1 SV=1
Length = 1012
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 94 NTTERVENINQKVEDINQKENS---QNSSIQVMSSLAFL--RTTLVAFWNSGITDELETV 148
NT E + NI ++ + K++ ++ IQ+ + LV F + T L +V
Sbjct: 728 NTVELIGNIAERFHALCLKDSGVLYEDPHIQIGIKAEWRGHHGRLVLFMGNKNTSPLTSV 787
Query: 149 CGLLSPPRSPRLLSPPVPGEIPPPSAISGGPTARNFRRCRHASEM 193
L+ PP RL PVP IPP + + N R R + +
Sbjct: 788 QALILPPAHLRLDLSPVPDTIPPRAQVQSPLEVMNIRPSRDVAVL 832
>sp|Q8LPK4|AP2A2_ARATH AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD
PE=1 SV=1
Length = 1013
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 94 NTTERVENINQKVEDINQKENS---QNSSIQVMSSLAFL--RTTLVAFWNSGITDELETV 148
NT E + NI ++ + K++ ++ IQ+ + LV F + T L +V
Sbjct: 728 NTVELIGNIAERFHALCLKDSGVLYEDPHIQIGIKAEWRGHHGRLVLFMGNKNTSPLTSV 787
Query: 149 CGLLSPPRSPRLLSPPVPGEIPPPSAISGGPTARNFRRCRHASEM 193
L+ PP RL PVP IPP + + N R R + +
Sbjct: 788 QALILPPAHLRLDLSPVPDTIPPRAQVQSPLEVMNIRPSRDVAVL 832
>sp|Q03563|SPK1_CAEEL Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans
GN=spk-1 PE=2 SV=3
Length = 1003
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 94 NTTERVENIN-QKVEDINQK----ENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETV 148
N +EN N +VED+ + EN + +++ S F RTTL F + E+
Sbjct: 648 NNAPELENFNASQVEDVTMEDTVNENGNRNKVEIRSPDRFDRTTLTPF------SDPESK 701
Query: 149 CGLLSPPRSPRLLSPPVPGEIPPPSAISGGPTARNFRR--CRHASEMSNPEMAVYLEKEH 206
G L+ P + L SP ++PP + P N C ++++ A ++ +
Sbjct: 702 FGDLASPSAEYLSSP--MSQLPPGGILPAPPVGPNIGDPYCDIDVKIADLGNACWVNHHY 759
Query: 207 LRDAEESDYHLMEEIIHTRFN 227
D + Y +E +I + +
Sbjct: 760 TDDIQTRQYRALEVLIGSGYG 780
>sp|O51128|SYN_BORBU Asparagine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210
/ B31 / CIP 102532 / DSM 4680) GN=asnS PE=3 SV=2
Length = 462
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 24/103 (23%)
Query: 178 GPT--ARNFRRCRHASE--MSNPEMAVYLEKEHLRDAEESDYHLMEEIIHTRFNNKEAGS 233
GPT A N RHASE M PEMA Y +++ AE+ +L+ I++ E
Sbjct: 226 GPTFRAENSNTTRHASEFWMIEPEMAFYKLNDNIALAEDLLKYLLSSILN------ECSQ 279
Query: 234 DADKFDN--------------NAFFLTVNEETASEIRANFKKN 262
D D +N N+ F + A EI N KKN
Sbjct: 280 DMDFLENYIEKGLIKKLENVINSNFEVITYTKAIEILENSKKN 322
>sp|Q6DFV6|FN3C1_MOUSE Fibronectin type III domain containing protein 3C1 OS=Mus musculus
GN=Fndc3c1 PE=2 SV=1
Length = 1356
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 151 LLSPPRSPRLLSPPVPGEIPPPSAI 175
LL+ P++P+LL PV GEIP PS I
Sbjct: 151 LLTYPQAPQLLYSPVQGEIPVPSYI 175
>sp|Q662R1|SYN_BORGA Asparagine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=asnS
PE=3 SV=1
Length = 462
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 178 GPT--ARNFRRCRHASE--MSNPEMAVYLEKEHLRDAEESDYHLMEEIIHTRFNNKEAGS 233
GPT A N RHASE M PEMA Y +++ AE+ +L+ I++ E
Sbjct: 226 GPTFRAENSNTTRHASEFWMIEPEMAFYKLNDNISLAEDLLKYLLSSILN------ECSQ 279
Query: 234 DADKFDN 240
D D +N
Sbjct: 280 DMDFLEN 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,540,151
Number of Sequences: 539616
Number of extensions: 4424255
Number of successful extensions: 20249
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 20106
Number of HSP's gapped (non-prelim): 176
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)