Query psy16996
Match_columns 268
No_of_seqs 152 out of 210
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 19:05:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3614|consensus 100.0 1.3E-35 2.9E-40 311.6 16.1 148 2-153 1051-1200(1381)
2 TIGR00870 trp transient-recept 96.6 0.00082 1.8E-08 68.3 1.2 37 2-38 624-661 (743)
3 KOG3609|consensus 79.0 5.9 0.00013 42.8 7.1 31 4-34 622-653 (822)
4 PF05384 DegS: Sensor protein 76.8 23 0.0005 31.1 9.0 71 76-150 63-140 (159)
5 PHA03386 P10 fibrous body prot 75.1 23 0.00051 29.0 8.0 49 91-150 13-61 (94)
6 PRK00846 hypothetical protein; 62.6 40 0.00086 26.5 6.7 53 97-149 6-61 (77)
7 KOG0837|consensus 61.0 44 0.00095 32.1 7.9 52 102-153 225-276 (279)
8 PF10205 KLRAQ: Predicted coil 59.9 21 0.00045 29.6 4.9 40 106-146 32-71 (102)
9 cd07651 F-BAR_PombeCdc15_like 56.1 81 0.0018 28.2 8.5 51 99-149 173-224 (236)
10 PF10152 DUF2360: Predicted co 56.0 65 0.0014 27.5 7.5 37 109-150 19-55 (148)
11 PHA03395 p10 fibrous body prot 48.1 1.2E+02 0.0026 24.6 7.4 58 90-155 11-68 (87)
12 PF11166 DUF2951: Protein of u 46.4 58 0.0013 27.0 5.4 46 86-131 7-53 (98)
13 PF05531 NPV_P10: Nucleopolyhe 44.7 1.1E+02 0.0025 24.0 6.6 59 90-156 11-69 (75)
14 PF04253 TFR_dimer: Transferri 43.4 1.2E+02 0.0026 24.4 6.9 30 125-154 91-124 (125)
15 PF04102 SlyX: SlyX; InterPro 42.8 1E+02 0.0023 23.0 6.0 36 89-124 3-38 (69)
16 PRK04325 hypothetical protein; 42.1 1.3E+02 0.0028 23.1 6.5 25 100-124 5-29 (74)
17 COG2941 CAT5 Ubiquinone biosyn 41.4 66 0.0014 29.7 5.5 111 101-250 75-188 (204)
18 KOG0614|consensus 41.3 1.6E+02 0.0034 31.5 8.8 47 133-180 56-103 (732)
19 COG4420 Predicted membrane pro 40.5 1.3E+02 0.0028 27.6 7.2 15 17-31 81-95 (191)
20 PF10482 CtIP_N: Tumour-suppre 39.8 2.2E+02 0.0048 24.4 8.0 42 82-124 21-62 (120)
21 PRK10803 tol-pal system protei 39.2 3.2E+02 0.0069 25.3 11.6 24 101-124 58-81 (263)
22 KOG3583|consensus 38.9 3.6E+02 0.0077 25.8 11.3 160 27-201 51-237 (279)
23 PF14643 DUF4455: Domain of un 38.4 1.5E+02 0.0033 29.6 8.1 70 88-158 59-129 (473)
24 PRK00106 hypothetical protein; 37.5 4.5E+02 0.0098 27.4 11.4 24 130-153 144-167 (535)
25 cd07662 BAR_SNX6 The Bin/Amphi 35.4 2.5E+02 0.0054 26.1 8.4 52 74-126 22-73 (218)
26 PRK12704 phosphodiesterase; Pr 34.5 2.3E+02 0.0049 29.2 8.7 21 133-153 132-152 (520)
27 PF10805 DUF2730: Protein of u 34.2 2.1E+02 0.0045 23.2 6.9 24 101-124 69-92 (106)
28 cd04779 HTH_MerR-like_sg4 Heli 33.3 3E+02 0.0064 23.2 8.9 56 93-150 77-132 (134)
29 KOG2856|consensus 33.3 2.7E+02 0.0058 28.5 8.7 70 54-124 171-244 (472)
30 PRK00888 ftsB cell division pr 33.2 2.6E+02 0.0057 22.6 7.5 6 149-154 75-80 (105)
31 COG0598 CorA Mg2+ and Co2+ tra 32.4 94 0.002 29.2 5.3 62 85-156 215-276 (322)
32 TIGR03319 YmdA_YtgF conserved 31.6 2.7E+02 0.0059 28.6 8.7 20 134-153 127-146 (514)
33 COG1256 FlgK Flagellar hook-as 31.6 1.5E+02 0.0032 30.9 6.9 62 77-138 150-211 (552)
34 PF07889 DUF1664: Protein of u 29.7 2.6E+02 0.0057 23.8 7.0 26 90-115 68-93 (126)
35 PF12072 DUF3552: Domain of un 28.7 4.1E+02 0.009 23.5 8.7 22 130-151 125-146 (201)
36 PF06825 HSBP1: Heat shock fac 27.8 1E+02 0.0022 22.8 3.7 34 72-109 7-40 (54)
37 KOG4451|consensus 27.6 1.4E+02 0.0031 28.6 5.5 20 64-83 43-62 (286)
38 cd07647 F-BAR_PSTPIP The F-BAR 27.3 4.2E+02 0.0091 23.9 8.4 48 102-149 179-227 (239)
39 PF10234 Cluap1: Clusterin-ass 27.3 2.6E+02 0.0056 26.7 7.2 58 92-150 171-239 (267)
40 PF07889 DUF1664: Protein of u 27.0 1.8E+02 0.004 24.7 5.6 34 91-124 83-116 (126)
41 PF06705 SF-assemblin: SF-asse 27.0 4.8E+02 0.01 23.6 9.2 26 130-155 115-140 (247)
42 PF10046 BLOC1_2: Biogenesis o 26.8 3.3E+02 0.0071 21.6 7.6 45 83-127 28-72 (99)
43 KOG3684|consensus 26.7 3.8E+02 0.0083 27.9 8.7 30 129-158 448-477 (489)
44 PRK13729 conjugal transfer pil 26.5 7.4E+02 0.016 25.7 11.1 49 95-147 74-122 (475)
45 PF04102 SlyX: SlyX; InterPro 26.4 2.6E+02 0.0057 20.9 5.8 23 102-124 2-24 (69)
46 PF15320 RAM: mRNA cap methyla 26.3 34 0.00073 27.2 1.0 17 11-27 17-33 (81)
47 TIGR02492 flgK_ends flagellar 26.3 2.6E+02 0.0056 26.4 7.1 64 75-138 144-208 (322)
48 cd07673 F-BAR_FCHO2 The F-BAR 26.2 3.4E+02 0.0073 25.3 7.7 59 91-149 165-224 (269)
49 PF02346 Vac_Fusion: Chordopox 26.1 2.5E+02 0.0054 21.1 5.5 41 93-133 4-45 (57)
50 cd07630 BAR_SNX_like The Bin/A 25.4 3.5E+02 0.0075 24.3 7.4 55 74-129 3-57 (198)
51 PLN03184 chloroplast Hsp70; Pr 24.7 8.4E+02 0.018 25.7 11.9 45 56-100 538-583 (673)
52 KOG3850|consensus 24.4 4.8E+02 0.01 26.8 8.7 50 73-124 287-337 (455)
53 smart00843 Ftsk_gamma This dom 23.0 1.8E+02 0.0039 22.0 4.4 29 129-158 27-55 (63)
54 PF04136 Sec34: Sec34-like fam 22.7 5E+02 0.011 22.4 8.2 15 142-156 75-89 (157)
55 PRK04406 hypothetical protein; 22.3 3.7E+02 0.008 20.7 6.6 24 101-124 8-31 (75)
56 PF13870 DUF4201: Domain of un 22.1 5E+02 0.011 22.2 10.0 57 65-124 41-97 (177)
57 COG4840 Uncharacterized protei 21.9 2E+02 0.0043 22.6 4.5 31 100-130 7-37 (71)
58 KOG4302|consensus 21.4 7.1E+02 0.015 26.9 9.8 95 60-155 36-143 (660)
59 PF06156 DUF972: Protein of un 21.1 4.7E+02 0.01 21.5 8.2 32 93-124 4-35 (107)
60 PF10267 Tmemb_cc2: Predicted 20.7 8.7E+02 0.019 24.4 10.8 83 59-147 225-309 (395)
61 COG2900 SlyX Uncharacterized p 20.6 4.3E+02 0.0093 20.8 6.9 46 105-150 9-57 (72)
62 PRK06665 flgK flagellar hook-a 20.1 3.1E+02 0.0068 28.7 6.9 64 75-138 156-219 (627)
63 cd07674 F-BAR_FCHO1 The F-BAR 20.0 6.8E+02 0.015 22.9 10.1 31 119-149 187-217 (261)
No 1
>KOG3614|consensus
Probab=100.00 E-value=1.3e-35 Score=311.62 Aligned_cols=148 Identities=40% Similarity=0.700 Sum_probs=140.7
Q ss_pred ccccccchhhhHhhhcCCCCCCCchhhhHHHHHHHHHHhhccC--CcccccCcccccCCHHHHHHhhhHHHHHHHHHHHH
Q psy16996 2 YVWMFQRFTVVMEYEQKPALPPPFIILSHILLFIKYLRRKCEG--VRETYDNGLKLFLDKEDLERLYDFEEECVEGYFRE 79 (268)
Q Consensus 2 qIWKFQRY~LImEYhsRP~LPPPFIIiSHIyLLiK~l~rkc~~--k~~~~d~~LKLfLs~dE~kKLhdFEE~CvEnYLre 79 (268)
+|||||||+||||||+||+||||||||||+|+++|++++++++ ++...+.++|+||++++++|||+||++|||+|+++
T Consensus 1051 ~iWkFQRY~limeyh~rP~LPPPfiilsHi~l~~~r~~~~~~~~~~~~~~~~~~klfls~e~~~kl~~fEe~~vE~~~r~ 1130 (1381)
T KOG3614|consen 1051 QIWKFQRYSLIMEYHSRPALPPPFIILSHIYLLLKRLSNSFRGDKRARDKDESLKLFLSKEENKKLHTFEEVCVENFLRK 1130 (1381)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHcccCcccccchhhhhhHhhCCHHHHhhhhHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999988764 33445678999999999999999999999999999
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccC
Q psy16996 80 KETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLS 153 (268)
Q Consensus 80 ke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~ 153 (268)
++.++++|++||||+|++|||.|+++|.|+++++.++|+++++++ .|++-+.+....+.+.|+...++.+
T Consensus 1131 ~~~~~~~s~~Erir~t~~rvd~~~~~l~e~~~r~~~lk~~v~~~~----~~l~~~~~~~~~~~~~lk~~~~~~~ 1200 (1381)
T KOG3614|consen 1131 REMEQNSSTEERIRRTANRVDLILNRLIELEQREKTLKDSVQNSE----TRLASVLQFSEEYVNILKILVNMVS 1200 (1381)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999 9999999999999999999988886
No 2
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=96.58 E-value=0.00082 Score=68.34 Aligned_cols=37 Identities=35% Similarity=0.635 Sum_probs=31.9
Q ss_pred ccccccchhhhHhhhc-CCCCCCCchhhhHHHHHHHHH
Q psy16996 2 YVWMFQRFTVVMEYEQ-KPALPPPFIILSHILLFIKYL 38 (268)
Q Consensus 2 qIWKFQRY~LImEYhs-RP~LPPPFIIiSHIyLLiK~l 38 (268)
+.|||||+.++++|+. .|++||||.+++|.-.+++.+
T Consensus 624 ~~wk~~r~~~~~~y~~~~~~~p~P~~~~~~~~~~~~~~ 661 (743)
T TIGR00870 624 EEWKFQRAKLWMSYEREGGTCPPPFNIIPGPKSFVGLF 661 (743)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCceeccchHHHHHHH
Confidence 4799999999999985 599999999999987765443
No 3
>KOG3609|consensus
Probab=79.02 E-value=5.9 Score=42.76 Aligned_cols=31 Identities=39% Similarity=0.715 Sum_probs=24.0
Q ss_pred ccccchhhhHhhhc-CCCCCCCchhhhHHHHH
Q psy16996 4 WMFQRFTVVMEYEQ-KPALPPPFIILSHILLF 34 (268)
Q Consensus 4 WKFQRY~LImEYhs-RP~LPPPFIIiSHIyLL 34 (268)
|||-|=.|-++|-+ .-.|||||-|+--.-.+
T Consensus 622 WKFARAKLw~syF~eg~tLPpPFNlipspks~ 653 (822)
T KOG3609|consen 622 WKFARAKLWMSYFDEGMALPPPFNLIPSPKSF 653 (822)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccchHHH
Confidence 99999999888854 56799999887633333
No 4
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=76.78 E-value=23 Score=31.12 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHH-------HHhhhhHHHHHhh
Q psy16996 76 YFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVA-------FWNSGITDELETV 148 (268)
Q Consensus 76 YLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~-------~~~~~i~~~le~v 148 (268)
=|.+-...+..-+++-|+.+.+....+..+|.-+++++..++..-..|+ .|+..|. ...+.|..+|+=+
T Consensus 63 rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LE----rrl~~l~~tierAE~l~sqi~vvl~yL 138 (159)
T PF05384_consen 63 RLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELE----RRLRNLEETIERAENLVSQIGVVLNYL 138 (159)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777778999999999999999999999999999999988998 7777554 4567777777766
Q ss_pred hc
Q psy16996 149 CG 150 (268)
Q Consensus 149 ~g 150 (268)
.|
T Consensus 139 ~~ 140 (159)
T PF05384_consen 139 SG 140 (159)
T ss_pred Hh
Confidence 65
No 5
>PHA03386 P10 fibrous body protein; Provisional
Probab=75.14 E-value=23 Score=29.04 Aligned_cols=49 Identities=8% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhc
Q psy16996 91 RIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCG 150 (268)
Q Consensus 91 RIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g 150 (268)
=|+.+..||+.+..+++++++. .+.|| --.++|.+..+-+++--+-+.|
T Consensus 13 dIkavd~KVdaLQ~qV~dv~~n-------~~~LD----a~~~qL~~l~tkV~~Iq~iLn~ 61 (94)
T PHA03386 13 AVQEVDTKVDALQTQLNGLEED-------SQPLD----GLPAQLTELDTKVSDIQSILTG 61 (94)
T ss_pred HHHHHhhHHHHHHHHHHHHHhc-------chhhh----hHHHHHHHHHHHHHHHHHhcCc
Confidence 4678888999999999888766 34466 3345777777777777776666
No 6
>PRK00846 hypothetical protein; Provisional
Probab=62.56 E-value=40 Score=26.55 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhHhhhhh-hhhHH--HHHHHHHhhhhHHHHHhhh
Q psy16996 97 ERVENINQKVEDINQKENSQNSSIQVMSS-LAFLR--TTLVAFWNSGITDELETVC 149 (268)
Q Consensus 97 eRVE~M~~qL~EI~Eke~~ik~sL~~Ld~-l~~~r--~~~~~~~~~~i~~~le~v~ 149 (268)
-|-+.|-.+|.++..++.|..+.+..|.. +.... ...|..-...+++-|..+-
T Consensus 6 ~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 6 LRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667777777777777777777761 11111 1123444455566665553
No 7
>KOG0837|consensus
Probab=61.01 E-value=44 Score=32.14 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccC
Q psy16996 102 INQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLS 153 (268)
Q Consensus 102 M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~ 153 (268)
-+++|..+.++|...+..++.|+|+--.++.++.++..+|+...-.=||++.
T Consensus 225 kLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~~ll 276 (279)
T KOG0837|consen 225 KLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQLLL 276 (279)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4678899999999999999999999999999999999999999999898864
No 8
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.91 E-value=21 Score=29.61 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHH
Q psy16996 106 VEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELE 146 (268)
Q Consensus 106 L~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le 146 (268)
=+++++++..++...+.+|||++ |..+|.-....+.++|+
T Consensus 32 ~e~Lk~ke~~LRk~eqE~dSL~F-rN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 32 KEQLKEKEQALRKLEQENDSLTF-RNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34667888999999999999985 88999999999999999
No 9
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=56.13 E-value=81 Score=28.19 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHh-HHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhh
Q psy16996 99 VENINQKVEDINQK-ENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVC 149 (268)
Q Consensus 99 VE~M~~qL~EI~Ek-e~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~ 149 (268)
.......+..++.+ +.-+...+..+-.|++.|+..|.+.....++.++++|
T Consensus 173 Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~c 224 (236)
T cd07651 173 YQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLC 224 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555543 2223345666668899999999999999999999998
No 10
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=56.01 E-value=65 Score=27.55 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhc
Q psy16996 109 INQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCG 150 (268)
Q Consensus 109 I~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g 150 (268)
+.+|..-+..+||.+| +++.+||.-..||- -||.|.+
T Consensus 19 cE~kL~~~e~~Lq~~E----~~l~iLEaKL~SIp-gLe~v~~ 55 (148)
T PF10152_consen 19 CEEKLSDMEQRLQRLE----ATLNILEAKLSSIP-GLEDVTD 55 (148)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhccc-ccccccc
Confidence 3555566677888888 89999998888886 5666654
No 11
>PHA03395 p10 fibrous body protein; Provisional
Probab=48.07 E-value=1.2e+02 Score=24.60 Aligned_cols=58 Identities=12% Similarity=0.312 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccCCC
Q psy16996 90 ERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLSPP 155 (268)
Q Consensus 90 ERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~~~ 155 (268)
.-|+.+.+||+.+..++.++++ .|..++.|.+- +.-+..-.+.|.+.+....-++.|+
T Consensus 11 ~dIkavd~KVdalQ~~V~~l~~-------nlpdv~~l~~k-Ldaq~~~Ltti~tkv~~I~diLnpd 68 (87)
T PHA03395 11 QDIKAVSDKVDALQAAVDDVRA-------NLPDVTEINEK-LDAQSASLDTISSAVDNITDILNPD 68 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHHh-------cCCcHHHHHHH-HHhHHHHHHHHHHHHHHHHHccCCC
Confidence 3467788888888888887753 45555544332 2212222366666666666777764
No 12
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=46.40 E-value=58 Score=26.96 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=37.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh-hhhhHHH
Q psy16996 86 MSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMS-SLAFLRT 131 (268)
Q Consensus 86 ~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld-~l~~~r~ 131 (268)
...+-||+..-+-.+.|+..|.++.+....+..-.+.+| .|++++.
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 567888998888899999999999999888888888887 4555544
No 13
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=44.70 E-value=1.1e+02 Score=24.04 Aligned_cols=59 Identities=12% Similarity=0.320 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccCCCC
Q psy16996 90 ERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLSPPR 156 (268)
Q Consensus 90 ERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~~~~ 156 (268)
+-|+...+||+.+..++..+... +..++.|. .|+.-+..-.+++.+.+..+.-+|.|+.
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~-------~~~v~~l~-~klDa~~~~l~~l~~~V~~I~~iL~~~~ 69 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESN-------LPDVTELN-KKLDAQSAQLTTLNTKVNEIQDILNPDI 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34667777777777777665544 33322222 3444444455556667777777787764
No 14
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=43.37 E-value=1.2e+02 Score=24.41 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=25.0
Q ss_pred hhhhHH----HHHHHHHhhhhHHHHHhhhcccCC
Q psy16996 125 SLAFLR----TTLVAFWNSGITDELETVCGLLSP 154 (268)
Q Consensus 125 ~l~~~r----~~~~~~~~~~i~~~le~v~g~~~~ 154 (268)
++.... ...+..++.+++.+|+.++.+|+.
T Consensus 91 ai~~~~~~~~~~~~~~~i~~v~~~i~~Aa~~L~~ 124 (125)
T PF04253_consen 91 AIEDKDSSKDWEEAQKQISRVAKAIQNAANTLSD 124 (125)
T ss_dssp HHTTGGGTSTHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666 778899999999999999988764
No 15
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.80 E-value=1e+02 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 89 DERIRNTTERVENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 89 EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
++||-..-.|+...=.-++++++-|.-....+..|.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~ 38 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQ 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333
No 16
>PRK04325 hypothetical protein; Provisional
Probab=42.09 E-value=1.3e+02 Score=23.11 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 100 ENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 100 E~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
+.|-.+|.++..++.|..+.+..|.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN 29 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLN 29 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666677766666666
No 17
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=41.41 E-value=66 Score=29.70 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16996 101 NINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLSPPRSPRLLSPPVPGEIPPPSAISGGPT 180 (268)
Q Consensus 101 ~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (268)
.|-...++-..+.+...+.|+.+. +|+.+|.-+.-.-.=+|=-.+||++.+.+=. -|
T Consensus 75 ~l~em~d~E~~HL~~f~~~l~e~~----vRPsll~P~W~~~~FalGA~a~Llgdk~am~-------------------~t 131 (204)
T COG2941 75 QLKEMADEEIDHLAWFEQRLLELG----VRPSLLNPLWYAAAFALGAGAGLLGDKAAMG-------------------FT 131 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----CCccHHHHHHHHHHHHHHHHHhhcccHHHHH-------------------HH
Confidence 455556666677889999999999 9999988665555667778888888774432 11
Q ss_pred CcccccccCCCCCCchHHHHHhhH---hhhhhhhhccHHHHHHHHHhhhcccccCCCcccCCCCccceehhhh
Q psy16996 181 ARNFRRCRHASEMSNPEMAVYLEK---EHLRDAEESDYHLMEEIIHTRFNNKEAGSDADKFDNNAFFLTVNEE 250 (268)
Q Consensus 181 ~~~~~~~~~~~e~s~~~~a~~~ek---~hl~~~e~~dy~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (268)
.+.---||| +||++.++.|-.+...|.|-|-++-+-...|.. -.-+.|-++...
T Consensus 132 ---------------eavE~vIe~Hy~~ql~~L~~~d~~lr~~l~qfR~DE~eH~d~Ai~-a~~a~~~~~i~~ 188 (204)
T COG2941 132 ---------------EAVETVIEKHYDGQLRELPNLDAELRAILAQFRDDELEHLDNAIA-AGEAIFPAPITK 188 (204)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhHHHHHHHHHHH-hCCCCccchHHH
Confidence 112223454 699999999999999999999888776666555 333334444433
No 18
>KOG0614|consensus
Probab=41.31 E-value=1.6e+02 Score=31.53 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHhhhhHHHHHhhhccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16996 133 LVAFWNSGITDELETVCGLL-SPPRSPRLLSPPVPGEIPPPSAISGGPT 180 (268)
Q Consensus 133 ~~~~~~~~i~~~le~v~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (268)
.++..+...|+||-+.|-+. .+|-++-+|-|..|.++++ ++.-|+-+
T Consensus 56 ~~~~~i~~ltnel~k~r~~~p~~~~~~~~l~p~tpl~~~~-~~s~~~~~ 103 (732)
T KOG0614|consen 56 KLEGEIAKLTNELDKLRSVLPQKAQSAASLGPGTPLASPR-SASPGNDT 103 (732)
T ss_pred HhHHHHHHHHHHHhhhhcCCcccccCccccCCCCCCCCCc-ccCchhhh
Confidence 45677888899999999865 2445555666666654443 55445444
No 19
>COG4420 Predicted membrane protein [Function unknown]
Probab=40.52 E-value=1.3e+02 Score=27.59 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.2
Q ss_pred cCCCCCCCchhhhHH
Q psy16996 17 QKPALPPPFIILSHI 31 (268)
Q Consensus 17 sRP~LPPPFIIiSHI 31 (268)
..||-|||||++.=+
T Consensus 81 ~~~wDpyPFi~LnLl 95 (191)
T COG4420 81 GLAWDPYPFILLNLL 95 (191)
T ss_pred CCcCCCccHHHHHHH
Confidence 389999999997643
No 20
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=39.81 E-value=2.2e+02 Score=24.41 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=33.4
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 82 TKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 82 ~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
.+...-+.||.++ ++|++.++.+-..++|+-...++.+..||
T Consensus 21 ~K~~~L~~erc~D-aqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 21 NKLLELKKERCLD-AQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHhHHHccc-HHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3444456788888 56899999988888888888889999998
No 21
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.24 E-value=3.2e+02 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 101 NINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 101 ~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
+|..||++++..+.-++..+..+.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 555556555555544444444443
No 22
>KOG3583|consensus
Probab=38.92 E-value=3.6e+02 Score=25.81 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHhh--ccCCcccccCcccccCCHHH------HHHhhhHHHHHHHHHHHHH-----HHHhhcChHHHHH
Q psy16996 27 ILSHILLFIKYLRRK--CEGVRETYDNGLKLFLDKED------LERLYDFEEECVEGYFREK-----ETKLAMSTDERIR 93 (268)
Q Consensus 27 IiSHIyLLiK~l~rk--c~~k~~~~d~~LKLfLs~dE------~kKLhdFEE~CvEnYLrek-----e~~k~~S~EERIR 93 (268)
|-||+.-|-+. .++ |.+-+.+-...+.+.+++|| +-++-.|-..-|-+|||-+ +.+..+-..++-+
T Consensus 51 las~ms~l~~~-~~k~~~p~lr~~~~~~~~~~~e~detl~r~TeGRVpvfsH~lVPdyLRTkPdPe~E~~e~ql~~~aa~ 129 (279)
T KOG3583|consen 51 LASFMSSLQSS-VRKSGMPHLRSHVLVTQRLQYEPDETLQRATEGRVPVFSHALVPDYLRTKPDPEMENEEGQLDGEAAA 129 (279)
T ss_pred HHHHHHHHHHH-HHHccCCccccchhhhhhhhcCchHHHHHHhcCcccccccccchHhhccCCChhhHHHHhhhhhHHhh
Confidence 34454444444 443 44444433333445555553 2245568888899999865 3444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHh-------------hhhHHHHHhhhcccCCCCCCCC
Q psy16996 94 NTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWN-------------SGITDELETVCGLLSPPRSPRL 160 (268)
Q Consensus 94 ~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~-------------~~i~~~le~v~g~~~~~~~~~~ 160 (268)
.+++ ...+|+...|.-+.-.-+.|...| ++|+ --=|..|=.-.|+=--=++-|-
T Consensus 130 ~saD---aa~kQI~~yNK~is~ll~~lsk~~----------re~tEs~~~~piqQT~n~~dT~~lVaaV~~GkGl~~~r~ 196 (279)
T KOG3583|consen 130 KSAD---AAVKQIAAYNKNISGLLNHLSKVD----------REHTESAIEKPIQQTYNRDDTAKLVAAVLTGKGLRSQRT 196 (279)
T ss_pred hhhH---HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhcCccccccChhHHHHHHHHHHhccccccccc
Confidence 5543 444455444444433334444444 3332 1112333333333333456677
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCcccccccCCCCCCchHHHHH
Q psy16996 161 LSPPVPGEIPPPSAIS-GGPTARNFRRCRHASEMSNPEMAVY 201 (268)
Q Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~s~~~~a~~ 201 (268)
+.|..|++++-|.|-+ .||..+... .-+-+|||--.++-.
T Consensus 197 ~~~~gPg~a~~pga~s~~gpS~~qpi-~m~qP~~sg~q~~Qq 237 (279)
T KOG3583|consen 197 MAPAGPGSAPMPGAPSSTGPSSSQPI-SMNQPEYSGSQLRQQ 237 (279)
T ss_pred cCCCCCCCCCCCCCCCCCCCcccCCC-CCCCCccChHHHHHh
Confidence 8888888888776644 355543322 223455655555443
No 23
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=38.44 E-value=1.5e+02 Score=29.63 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccCCCCCC
Q psy16996 88 TDERIRNTTERVENINQKVED-INQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLSPPRSP 158 (268)
Q Consensus 88 ~EERIR~TseRVE~M~~qL~E-I~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~~~~~~ 158 (268)
++..+..+.+.+.++-..+.+ ..-+...|+.--..|++++.-|...+.......++.|+++++++ ||..-
T Consensus 59 d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~-~~dv~ 129 (473)
T PF14643_consen 59 DSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKIAHLL-PPDVE 129 (473)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-cHHHH
Confidence 334555666666666555544 23344455555666778889999999999999999999998864 44333
No 24
>PRK00106 hypothetical protein; Provisional
Probab=37.46 E-value=4.5e+02 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhHHHHHhhhcccC
Q psy16996 130 RTTLVAFWNSGITDELETVCGLLS 153 (268)
Q Consensus 130 r~~~~~~~~~~i~~~le~v~g~~~ 153 (268)
+...++........+||+++||-.
T Consensus 144 ~~~~~~~~~~~~~~~Le~~a~lt~ 167 (535)
T PRK00106 144 REEQVEKLEEQKKAELERVAALSQ 167 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCH
Confidence 333466667778889999999843
No 25
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=35.37 E-value=2.5e+02 Score=26.10 Aligned_cols=52 Identities=10% Similarity=0.341 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhh
Q psy16996 74 EGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSL 126 (268)
Q Consensus 74 EnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l 126 (268)
+.||.++ +.+-..-+.+|+++..++|.|...-+++-.--..+-.++..|.+-
T Consensus 22 D~wFe~e-k~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~ 73 (218)
T cd07662 22 DDFFEHE-RTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQ 73 (218)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3666433 444556679999999999999999999998888888888888743
No 26
>PRK12704 phosphodiesterase; Provisional
Probab=34.53 E-value=2.3e+02 Score=29.15 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHhhhhHHHHHhhhcccC
Q psy16996 133 LVAFWNSGITDELETVCGLLS 153 (268)
Q Consensus 133 ~~~~~~~~i~~~le~v~g~~~ 153 (268)
.++.........||+++||-.
T Consensus 132 ~~~~~~~~~~~~l~~~a~lt~ 152 (520)
T PRK12704 132 ELEELIEEQLQELERISGLTA 152 (520)
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 456667777888999999743
No 27
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.19 E-value=2.1e+02 Score=23.17 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 101 NINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 101 ~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
.+...|.+++-.+..+..+|++++
T Consensus 69 ~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 69 DLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 28
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.28 E-value=3e+02 Score=23.22 Aligned_cols=56 Identities=5% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhc
Q psy16996 93 RNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCG 150 (268)
Q Consensus 93 R~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g 150 (268)
....++++.+..++.++.++..-+++.+..||. +.|..+..+..+--+...+++.=
T Consensus 77 ~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 132 (134)
T cd04779 77 REVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR--AQRMKMTKELSQQVLTLIQSLTL 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCHHhHHHHHHHHH
Confidence 344556777777777777777777777777774 45666667777766777776653
No 29
>KOG2856|consensus
Probab=33.27 E-value=2.7e+02 Score=28.48 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=47.5
Q ss_pred cccCCHHHHHHhhhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHh----HHhhhhhHhhhh
Q psy16996 54 KLFLDKEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQK----ENSQNSSIQVMS 124 (268)
Q Consensus 54 KLfLs~dE~kKLhdFEE~CvEnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Ek----e~~ik~sL~~Ld 124 (268)
.-.++++.++||++=-+.|++.-. +.+.+...+..+--+-|..=++.|....+.+++. ..|++.-|+.+-
T Consensus 171 DsSvspeq~kKlqdrveK~k~evq-ktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~ 244 (472)
T KOG2856|consen 171 DSSVSPEQLKKLQDRVEKCKQEVQ-KTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQ 244 (472)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999998844 4444555566666566666667776666666544 356666666554
No 30
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.22 E-value=2.6e+02 Score=22.63 Aligned_cols=6 Identities=33% Similarity=0.966 Sum_probs=2.8
Q ss_pred hcccCC
Q psy16996 149 CGLLSP 154 (268)
Q Consensus 149 ~g~~~~ 154 (268)
.||+-|
T Consensus 75 Lg~vk~ 80 (105)
T PRK00888 75 LGMVKP 80 (105)
T ss_pred cCCCCC
Confidence 355444
No 31
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.44 E-value=94 Score=29.24 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=41.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhcccCCCC
Q psy16996 85 AMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCGLLSPPR 156 (268)
Q Consensus 85 ~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g~~~~~~ 156 (268)
.....+.+++..+.+.++...++...+..+.+.+... .++-+.-+.|+--|=-++.++.||+
T Consensus 215 ~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~----------s~is~~~N~imk~LTi~s~iflPpT 276 (322)
T COG0598 215 SEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYL----------SLINNNQNEIMKILTIVSTIFLPPT 276 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4445566677777777777777766666554444333 3446667888888888888888884
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.57 E-value=2.7e+02 Score=28.55 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=14.1
Q ss_pred HHHHhhhhHHHHHhhhcccC
Q psy16996 134 VAFWNSGITDELETVCGLLS 153 (268)
Q Consensus 134 ~~~~~~~i~~~le~v~g~~~ 153 (268)
+.+.......+||+++||-.
T Consensus 127 ~~~~~~~~~~~le~~a~lt~ 146 (514)
T TIGR03319 127 LEELIAEQREELERISGLTQ 146 (514)
T ss_pred HHHHHHHHHHHHHHHhCCCH
Confidence 44555666678999999843
No 33
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=31.57 E-value=1.5e+02 Score=30.87 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=46.5
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHh
Q psy16996 77 FREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWN 138 (268)
Q Consensus 77 Lreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~ 138 (268)
+.+.-...+...+..|..+-.+|-++..++.+++.++...+.+-..-.-|-..|-.||.+++
T Consensus 150 ~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs 211 (552)
T COG1256 150 TYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELS 211 (552)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHH
Confidence 33444555566777888888899999999999999977665555555566678888888774
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.65 E-value=2.6e+02 Score=23.79 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy16996 90 ERIRNTTERVENINQKVEDINQKENS 115 (268)
Q Consensus 90 ERIR~TseRVE~M~~qL~EI~Eke~~ 115 (268)
.||.....++|++...-+.+++.|.-
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~ 93 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTE 93 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 35
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.68 E-value=4.1e+02 Score=23.48 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhHHHHHhhhcc
Q psy16996 130 RTTLVAFWNSGITDELETVCGL 151 (268)
Q Consensus 130 r~~~~~~~~~~i~~~le~v~g~ 151 (268)
+..-++.....-.+.||++.||
T Consensus 125 ~~~e~~~~~~~~~~~Le~iAgl 146 (201)
T PF12072_consen 125 REEELEELIEEQQQELEEIAGL 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3444666677778899999997
No 36
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=27.82 E-value=1e+02 Score=22.82 Aligned_cols=34 Identities=15% Similarity=0.508 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Q psy16996 72 CVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDI 109 (268)
Q Consensus 72 CvEnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI 109 (268)
-|++.|.+.+.+++.-+++=+ .|+|+|..+|+++
T Consensus 7 ~v~~lL~qmq~kFq~mS~~I~----~riDeM~~RIDdL 40 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQTMSDQIL----GRIDEMSSRIDDL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHH
Confidence 467777777666665544422 3566666666554
No 37
>KOG4451|consensus
Probab=27.62 E-value=1.4e+02 Score=28.56 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=15.3
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q psy16996 64 RLYDFEEECVEGYFREKETK 83 (268)
Q Consensus 64 KLhdFEE~CvEnYLreke~~ 83 (268)
++.+||+.|.|+|-.+...-
T Consensus 43 ~a~~~ee~~leey~~em~~l 62 (286)
T KOG4451|consen 43 CAFTWEEENLEEYELEMGVL 62 (286)
T ss_pred hhcchHHHHHHHHHHHHHHH
Confidence 35689999999998776544
No 38
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.32 E-value=4.2e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=33.5
Q ss_pred HHHHHHHHHHh-HHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhh
Q psy16996 102 INQKVEDINQK-ENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVC 149 (268)
Q Consensus 102 M~~qL~EI~Ek-e~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~ 149 (268)
....++.++.+ +.-+...++.+-.|++-|+..|.+....-++.+.++|
T Consensus 179 ~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~~c 227 (239)
T cd07647 179 SIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLGSMQC 227 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555533 2333346666668899999999988888888888887
No 39
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.26 E-value=2.6e+02 Score=26.73 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhH-----------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhc
Q psy16996 92 IRNTTERVENINQKVEDINQKENSQNSSI-----------QVMSSLAFLRTTLVAFWNSGITDELETVCG 150 (268)
Q Consensus 92 IR~TseRVE~M~~qL~EI~Eke~~ik~sL-----------~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g 150 (268)
|....+.++.+-.+|..+..-+..+..-+ +.|.+|..+|++-|++ |..+..+|.+++.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdE-yEklE~EL~~lY~ 239 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDE-YEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHH
Confidence 34444555555555555554444422222 3344888889998875 4566666666553
No 40
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.01 E-value=1.8e+02 Score=24.72 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 91 RIRNTTERVENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 91 RIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
-.+.|.+.|..+-.-++.++..+..+....+.||
T Consensus 83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555
No 41
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.97 E-value=4.8e+02 Score=23.62 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhHHHHHhhhcccCCC
Q psy16996 130 RTTLVAFWNSGITDELETVCGLLSPP 155 (268)
Q Consensus 130 r~~~~~~~~~~i~~~le~v~g~~~~~ 155 (268)
|...++...+.+.+.|..+-..|--=
T Consensus 115 r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 115 RPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666777777777777666543
No 42
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.75 E-value=3.3e+02 Score=21.64 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=32.5
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhh
Q psy16996 83 KLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLA 127 (268)
Q Consensus 83 ~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~ 127 (268)
+.+.....+.....+.+.++...+++++++..-++.-|+.+|.++
T Consensus 28 ~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie 72 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIE 72 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777788888888888888777777787777444
No 43
>KOG3684|consensus
Probab=26.74 E-value=3.8e+02 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCCC
Q psy16996 129 LRTTLVAFWNSGITDELETVCGLLSPPRSP 158 (268)
Q Consensus 129 ~r~~~~~~~~~~i~~~le~v~g~~~~~~~~ 158 (268)
.|.+.|++-...++.+|+++-|++++|.++
T Consensus 448 ~qI~~Le~kl~~l~~~l~s~~~~~~~~~~~ 477 (489)
T KOG3684|consen 448 KQIDTLESKLEALTASLSSLPGLLAQPLRS 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhcCcccc
Confidence 566667777788888888888888888554
No 44
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.50 E-value=7.4e+02 Score=25.71 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHh
Q psy16996 95 TTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELET 147 (268)
Q Consensus 95 TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~ 147 (268)
..+|++++-++|+.++..+..+..-++.++ -++.-++..+.++.+.+|.
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle----~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQ----RRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHh
Confidence 334555555666655444343444444554 6666677777777777753
No 45
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.38 E-value=2.6e+02 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 102 INQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 102 M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
|-.+|.++..++.|..+.+..|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888777
No 46
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=26.32 E-value=34 Score=27.15 Aligned_cols=17 Identities=41% Similarity=0.805 Sum_probs=14.2
Q ss_pred hhHhhhcCCCCCCCchh
Q psy16996 11 VVMEYEQKPALPPPFII 27 (268)
Q Consensus 11 LImEYhsRP~LPPPFII 27 (268)
-.|+|.++|+-+||.|=
T Consensus 17 ey~~~~~~~~~~PPIV~ 33 (81)
T PF15320_consen 17 EYMEYCKRPFPPPPIVE 33 (81)
T ss_pred HHHHHHhCCCCCCCEec
Confidence 46899999999999763
No 47
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=26.28 E-value=2.6e+02 Score=26.43 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh-hHhhhhhhhhHHHHHHHHHh
Q psy16996 75 GYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNS-SIQVMSSLAFLRTTLVAFWN 138 (268)
Q Consensus 75 nYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~-sL~~Ld~l~~~r~~~~~~~~ 138 (268)
+.+..+-.......+..|...-++|..++.+|.+++.+...... .-..--.|.--|-.+|.+++
T Consensus 144 n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~DqRD~ll~~LS 208 (322)
T TIGR02492 144 NQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLDQRDLLLKELS 208 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHHHHHHHHHHHH
Confidence 34555566667778888899989999999999999999765543 21222234457777777663
No 48
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.20 E-value=3.4e+02 Score=25.26 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhh
Q psy16996 91 RIRNTTERVENINQKVEDINQ-KENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVC 149 (268)
Q Consensus 91 RIR~TseRVE~M~~qL~EI~E-ke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~ 149 (268)
+++.+.+.....+..++..+. -+.-+......+-.+++-|+..|.++....++.+.++|
T Consensus 165 k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~ 224 (269)
T cd07673 165 KSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIH 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444445555554433 12233444555557889999999998888888777776
No 49
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=26.08 E-value=2.5e+02 Score=21.05 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh-hhhhHHHHH
Q psy16996 93 RNTTERVENINQKVEDINQKENSQNSSIQVMS-SLAFLRTTL 133 (268)
Q Consensus 93 R~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld-~l~~~r~~~ 133 (268)
+..-+|+-.+.+.+..+-+.=.....++..|| ++|++|...
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444556666666 677777654
No 50
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.36 E-value=3.5e+02 Score=24.29 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhH
Q psy16996 74 EGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFL 129 (268)
Q Consensus 74 EnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~ 129 (268)
+.||. +.+......+.+++.....++.|..+=.++-.-..-+-.+|..|.+.++.
T Consensus 3 D~~F~-~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~ 57 (198)
T cd07630 3 DEFFQ-KERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEA 57 (198)
T ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34443 33455566777888888888888777777776666666777766665543
No 51
>PLN03184 chloroplast Hsp70; Provisional
Probab=24.71 E-value=8.4e+02 Score=25.68 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=22.6
Q ss_pred cCCHHHHHHhhhHH-HHHHHHHHHHHHHHhhcChHHHHHHHHHHHH
Q psy16996 56 FLDKEDLERLYDFE-EECVEGYFREKETKLAMSTDERIRNTTERVE 100 (268)
Q Consensus 56 fLs~dE~kKLhdFE-E~CvEnYLreke~~k~~S~EERIR~TseRVE 100 (268)
-|++++.+++..=+ +.-.++.......+.+...+.-|-.+..+++
T Consensus 538 ~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 538 TLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47888777655433 3333344444444444445555555544443
No 52
>KOG3850|consensus
Probab=24.40 E-value=4.8e+02 Score=26.79 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhhHhhhh
Q psy16996 73 VEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENS-QNSSIQVMS 124 (268)
Q Consensus 73 vEnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~-ik~sL~~Ld 124 (268)
+|.|.++-..-.+.=.|||-|-+ |+|+.++-+-|++..+.+ +|..|.+++
T Consensus 287 ke~~krdy~fi~etLQEERyR~e--rLEEqLNdlteLqQnEi~nLKqElasme 337 (455)
T KOG3850|consen 287 KEQIKRDYKFIAETLQEERYRYE--RLEEQLNDLTELQQNEIANLKQELASME 337 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445577877744 888888888777766543 455666666
No 53
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=23.01 E-value=1.8e+02 Score=22.05 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCCCCCC
Q psy16996 129 LRTTLVAFWNSGITDELETVCGLLSPPRSP 158 (268)
Q Consensus 129 ~r~~~~~~~~~~i~~~le~v~g~~~~~~~~ 158 (268)
-|+.+==+...+|+|.||. .|+++|+...
T Consensus 27 R~~~IGynrAariid~lE~-~GiV~p~~g~ 55 (63)
T smart00843 27 RRLRIGYNRAARLIDQLEE-EGIVGPANGS 55 (63)
T ss_pred HHHhcchhHHHHHHHHHHH-CcCCCCCCCC
Confidence 3333334567899999997 7999998543
No 54
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=22.73 E-value=5e+02 Score=22.35 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.6
Q ss_pred HHHHHhhhcccCCCC
Q psy16996 142 TDELETVCGLLSPPR 156 (268)
Q Consensus 142 ~~~le~v~g~~~~~~ 156 (268)
-++||.++..|++|.
T Consensus 75 F~~Ld~itr~Ln~p~ 89 (157)
T PF04136_consen 75 FEELDPITRRLNSPG 89 (157)
T ss_pred HhhHHHHHHHHcCCC
Confidence 478999999999883
No 55
>PRK04406 hypothetical protein; Provisional
Probab=22.34 E-value=3.7e+02 Score=20.73 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 101 NINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 101 ~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
.|-.+|.++..++.|..+.+..|.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN 31 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELN 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666555555
No 56
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.09 E-value=5e+02 Score=22.18 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 65 LYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 65 LhdFEE~CvEnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
+.|||....||---..........=.+++ .++-.-...|..+++|.+++...+..+.
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk---~~~~~~v~~L~h~keKl~~~~~~~~~l~ 97 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLK---KKIGKTVQILTHVKEKLHFLSEELERLK 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999888554443333322223333 3344455566667777776666666555
No 57
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.94 E-value=2e+02 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHhhhhhHhhhhhhhhHH
Q psy16996 100 ENINQKVEDINQKENSQNSSIQVMSSLAFLR 130 (268)
Q Consensus 100 E~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r 130 (268)
+++..+++||.+|.++....+..=++++-.+
T Consensus 7 Enl~fmi~eI~~KLnmvN~gvl~~e~~d~~~ 37 (71)
T COG4840 7 ENLDFMIEEIREKLNMVNVGVLDPEKYDNAN 37 (71)
T ss_pred hhHHHHHHHHHHHHhhhhhhccCHHhccccc
Confidence 5666778888888888877776655444333
No 58
>KOG4302|consensus
Probab=21.37 E-value=7.1e+02 Score=26.88 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhcChHH---HHHHHHHHHHHHHHHHHHHHHh-------HHhhhhhHhhhh-hhhh
Q psy16996 60 EDLERLYDFEEECVEGYFREKETKLAMSTDE---RIRNTTERVENINQKVEDINQK-------ENSQNSSIQVMS-SLAF 128 (268)
Q Consensus 60 dE~kKLhdFEE~CvEnYLreke~~k~~S~EE---RIR~TseRVE~M~~qL~EI~Ek-------e~~ik~sL~~Ld-~l~~ 128 (268)
+.+++|...|..|.+-|.+.-+. ...+... -|-+.-..+..++..|++-... +..+++-|..|. .|+.
T Consensus 36 e~d~~l~~le~e~~~~y~~kve~-a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~ 114 (660)
T KOG4302|consen 36 ERDKKLLRLEQECLEIYKRKVEE-ASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEG 114 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHH
Confidence 34568899999999999844332 2222222 2233334455555555443222 223333344443 4555
Q ss_pred HHHHHHH--HHhhhhHHHHHhhhcccCCC
Q psy16996 129 LRTTLVA--FWNSGITDELETVCGLLSPP 155 (268)
Q Consensus 129 ~r~~~~~--~~~~~i~~~le~v~g~~~~~ 155 (268)
+|...-+ ..+.-|.+.+|++|+-|..|
T Consensus 115 lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 115 LRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5554422 23466788899999999988
No 59
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.08 E-value=4.7e+02 Score=21.48 Aligned_cols=32 Identities=9% Similarity=0.286 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 93 RNTTERVENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 93 R~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
+...++|+.|-.+|.++.+.+.-+|..+..|-
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~ 35 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELL 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777766665
No 60
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.72 E-value=8.7e+02 Score=24.45 Aligned_cols=83 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhhHhhhhhhhhHHHH-HHHH
Q psy16996 59 KEDLERLYDFEEECVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENS-QNSSIQVMSSLAFLRTT-LVAF 136 (268)
Q Consensus 59 ~dE~kKLhdFEE~CvEnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~-ik~sL~~Ld~l~~~r~~-~~~~ 136 (268)
.+....|..==+..++.|.++...-...-.|||.|.. |+|+.++-+-|++..|.+ +|..|.+++ -|.+ |..+
T Consensus 225 k~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~e--rLEeqlNd~~elHq~Ei~~LKqeLa~~E----EK~~Yqs~e 298 (395)
T PF10267_consen 225 KESQSRLEESIEKLKEQYQREYQFILEALQEERYRYE--RLEEQLNDLTELHQNEIYNLKQELASME----EKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHH
Q ss_pred HhhhhHHHHHh
Q psy16996 137 WNSGITDELET 147 (268)
Q Consensus 137 ~~~~i~~~le~ 147 (268)
....|-+.||+
T Consensus 299 RaRdi~E~~Es 309 (395)
T PF10267_consen 299 RARDIWEVMES 309 (395)
T ss_pred HHhHHHHHHHH
No 61
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=4.3e+02 Score=20.82 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=21.5
Q ss_pred HHHHHHHhHHhhhhhHhhhh-hhhhHHHHH--HHHHhhhhHHHHHhhhc
Q psy16996 105 KVEDINQKENSQNSSIQVMS-SLAFLRTTL--VAFWNSGITDELETVCG 150 (268)
Q Consensus 105 qL~EI~Eke~~ik~sL~~Ld-~l~~~r~~~--~~~~~~~i~~~le~v~g 150 (268)
+|.++-.++.|..+.|..|. .|+|.+..+ +..-...+++.|..+=+
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444445555555555443 344444442 33334445555555433
No 62
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.12 E-value=3.1e+02 Score=28.69 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHh
Q psy16996 75 GYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWN 138 (268)
Q Consensus 75 nYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~ 138 (268)
+.+..+-...+...+..|..+-.+|-.++.+|.+++.+...+...-..--.|.-.|-.+|++++
T Consensus 156 n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS 219 (627)
T PRK06665 156 HDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLS 219 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Confidence 4455566667777888899998999999999999998866544322111134447777777664
No 63
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.01 E-value=6.8e+02 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=22.2
Q ss_pred hHhhhhhhhhHHHHHHHHHhhhhHHHHHhhh
Q psy16996 119 SIQVMSSLAFLRTTLVAFWNSGITDELETVC 149 (268)
Q Consensus 119 sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~ 149 (268)
....+-.+++-|+..|.++.....+.++.+|
T Consensus 187 ~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~ 217 (261)
T cd07674 187 SAQKFQDIEETHLRHMKLLIKGYSHSVEDTH 217 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344446778999988888888777776654
Done!