Query psy16996
Match_columns 268
No_of_seqs 152 out of 210
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 19:05:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e7k_A TRPM7 channel; coiled-c 99.4 6.8E-13 2.3E-17 96.5 7.1 53 92-148 4-56 (56)
2 4emc_A Monopolin complex subun 35.5 1.2E+02 0.0041 26.5 7.5 26 129-154 62-87 (190)
3 3c3f_A Alpha/beta peptide with 28.4 71 0.0024 20.9 3.6 29 90-118 1-29 (34)
4 1m1j_B Fibrinogen beta chain; 28.1 1.8E+02 0.0062 28.3 8.1 12 196-207 294-305 (464)
5 3q0x_A Centriole protein; cent 27.7 1.5E+02 0.0051 26.3 6.9 44 93-142 174-219 (228)
6 3ci9_A Heat shock factor-bindi 26.8 66 0.0023 22.3 3.5 34 72-109 10-43 (48)
7 2jee_A YIIU; FTSZ, septum, coi 24.4 2.4E+02 0.008 21.5 7.9 36 87-122 10-45 (81)
8 3e7k_A TRPM7 channel; coiled-c 24.2 1.8E+02 0.0061 20.9 5.5 38 88-125 7-44 (56)
9 1kd8_B GABH BLL, GCN4 acid bas 23.9 1.1E+02 0.0038 20.2 4.0 28 90-117 1-28 (36)
10 2d4y_A HAP1, flagellar HOOK-as 20.8 2.2E+02 0.0077 26.6 7.1 64 75-138 81-146 (463)
11 2yko_A LINE-1 ORF1P; RNA-bindi 20.3 1.5E+02 0.0052 26.5 5.5 37 88-124 11-47 (233)
12 1wlq_A Geminin; coiled-coil; 2 20.2 3E+02 0.01 21.1 7.2 43 100-150 41-83 (83)
No 1
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=99.39 E-value=6.8e-13 Score=96.47 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q psy16996 92 IRNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETV 148 (268)
Q Consensus 92 IR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v 148 (268)
||+|++||++|+.+|+|++|||+|||+||++|| .|+.+|+++++.+.|.|+.+
T Consensus 4 iRvT~eRve~m~~~l~Evnekv~~ik~sL~~LD----~~lg~Lqdlsal~v~tLk~l 56 (56)
T 3e7k_A 4 SRVTFERVEQMSIQIKEVGDRVNYIKRSLQSLD----SQIGHLQDLSALTVDTLKTL 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC-
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999 99999999999999999864
No 2
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.54 E-value=1.2e+02 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhHHHHHhhhcccCC
Q psy16996 129 LRTTLVAFWNSGITDELETVCGLLSP 154 (268)
Q Consensus 129 ~r~~~~~~~~~~i~~~le~v~g~~~~ 154 (268)
.+++.-.+-++=+-|-+|-+|||+--
T Consensus 62 ~~~~~~~e~i~i~~DL~e~LTGl~V~ 87 (190)
T 4emc_A 62 TQTSQQAENSEVIKDLYEYLCNVRVH 87 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSEECC
T ss_pred hHHHHHHHhhhHHHHHHHHccCcEEE
Confidence 44455567778888999999999853
No 3
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.44 E-value=71 Score=20.92 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy16996 90 ERIRNTTERVENINQKVEDINQKENSQNS 118 (268)
Q Consensus 90 ERIR~TseRVE~M~~qL~EI~Eke~~ik~ 118 (268)
+|+...-+||++++..-.++...|.-++.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45666778888888888888777664443
No 4
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.10 E-value=1.8e+02 Score=28.33 Aligned_cols=12 Identities=17% Similarity=-0.153 Sum_probs=7.3
Q ss_pred hHHHHHhhHhhh
Q psy16996 196 PEMAVYLEKEHL 207 (268)
Q Consensus 196 ~~~a~~~ek~hl 207 (268)
-||-+-.||=|+
T Consensus 294 gEfWLGle~ih~ 305 (464)
T 1m1j_B 294 GEYWLGNDKISQ 305 (464)
T ss_dssp CSEECCHHHHHH
T ss_pred eeeEecccceee
Confidence 466666666664
No 5
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=27.66 E-value=1.5e+02 Score=26.32 Aligned_cols=44 Identities=9% Similarity=0.065 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHH--HHHHHHhhhhH
Q psy16996 93 RNTTERVENINQKVEDINQKENSQNSSIQVMSSLAFLRT--TLVAFWNSGIT 142 (268)
Q Consensus 93 R~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~--~~~~~~~~~i~ 142 (268)
.....|...+-..|...++.-+.+.. +|++.|. +.+++||.+..
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~------~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVA------QLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhh
Confidence 33334444444444444444333332 4445554 46889997753
No 6
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=26.83 E-value=66 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHH
Q psy16996 72 CVEGYFREKETKLAMSTDERIRNTTERVENINQKVEDI 109 (268)
Q Consensus 72 CvEnYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI 109 (268)
-|++.|.+.+.+++.-+++=+ .|+|.|..+++++
T Consensus 10 ~vq~LL~qmq~kFq~mS~~I~----~riDdM~~RIDdL 43 (48)
T 3ci9_A 10 VVQTLLQQMQDKFQTISDQII----GRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHH
Confidence 366666666655554433322 2556666655554
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.40 E-value=2.4e+02 Score=21.48 Aligned_cols=36 Identities=14% Similarity=0.407 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhh
Q psy16996 87 STDERIRNTTERVENINQKVEDINQKENSQNSSIQV 122 (268)
Q Consensus 87 S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~ 122 (268)
..+.||..+-+.+.-+-.-+++++++=+......+.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888999999886555544444
No 8
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=24.16 E-value=1.8e+02 Score=20.87 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhhh
Q psy16996 88 TDERIRNTTERVENINQKVEDINQKENSQNSSIQVMSS 125 (268)
Q Consensus 88 ~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld~ 125 (268)
+.||+...+-+++++..+..-++.-..++...|..|+.
T Consensus 7 T~eRve~m~~~l~Evnekv~~ik~sL~~LD~~lg~Lqd 44 (56)
T 3e7k_A 7 TFERVEQMSIQIKEVGDRVNYIKRSLQSLDSQIGHLQD 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35677777777777777777777766666666655553
No 9
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.94 E-value=1.1e+02 Score=20.23 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q psy16996 90 ERIRNTTERVENINQKVEDINQKENSQN 117 (268)
Q Consensus 90 ERIR~TseRVE~M~~qL~EI~Eke~~ik 117 (268)
+|+...-+||+++.....++...|.-++
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4666677889998888888887766433
No 10
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=20.82 E-value=2.2e+02 Score=26.57 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhh--HhhhhhhhhHHHHHHHHHh
Q psy16996 75 GYFREKETKLAMSTDERIRNTTERVENINQKVEDINQKENSQNSS--IQVMSSLAFLRTTLVAFWN 138 (268)
Q Consensus 75 nYLreke~~k~~S~EERIR~TseRVE~M~~qL~EI~Eke~~ik~s--L~~Ld~l~~~r~~~~~~~~ 138 (268)
+.+..+-...+...+..|..+-.+|-.++.+|.+++.+....+.. -..=-.|---|-.+|.+++
T Consensus 81 n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS 146 (463)
T 2d4y_A 81 KTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHH
Confidence 345555666777788899999999999999999999997544321 1111124447777777664
No 11
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.32 E-value=1.5e+02 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHhhhh
Q psy16996 88 TDERIRNTTERVENINQKVEDINQKENSQNSSIQVMS 124 (268)
Q Consensus 88 ~EERIR~TseRVE~M~~qL~EI~Eke~~ik~sL~~Ld 124 (268)
.||||...-+|+++|..........+.-.+++|+.|+
T Consensus 11 ~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 11 LEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666544444434445556666665
No 12
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.23 E-value=3e+02 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHhhhhhHhhhhhhhhHHHHHHHHHhhhhHHHHHhhhc
Q psy16996 100 ENINQKVEDINQKENSQNSSIQVMSSLAFLRTTLVAFWNSGITDELETVCG 150 (268)
Q Consensus 100 E~M~~qL~EI~Eke~~ik~sL~~Ld~l~~~r~~~~~~~~~~i~~~le~v~g 150 (268)
+.+...++..++.++.+|.....|- -|.+-...|++-+|+++|
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~--------elA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLA--------EVAEHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH--------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcC
Confidence 3444555555554444444333333 334445567777777766
Done!