BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16997
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM++E+ + VD + A EK+ N+E+ + IK DKKY P WH +VG FG
Sbjct: 7 VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 80 EITYECKSLLYMFFGGNLAICMWK 103
+T+E + +Y F+ G +AI ++K
Sbjct: 65 YVTHETRHFIY-FYLGQVAILLFK 87
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM++E+ + VD + A EK+ N+E+ + IK DKKY P WH +VG FG
Sbjct: 7 VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 80 EITYECKSLLYMFFGGNLAICMWK 103
+T+E + +Y F+ G +AI ++K
Sbjct: 65 YVTHETRHFIY-FYLGQVAILLFK 87
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM++E+ + VD + A EK+ N+E+ + IK DKKY P WH +VG FG
Sbjct: 9 VIKNADMSEEMQQDAVDCATQALEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 66
Query: 80 EITYECKSLLYMFFGGNLAICMWK 103
+T+E + +Y F+ G +AI ++K
Sbjct: 67 YVTHETRHFIY-FYLGQVAILLFK 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
++ DM++E+ + VD + A EK+ + A+ IK DKKY P WH +VG FG
Sbjct: 9 VIKNADMSEEMQQDAVDCATQALEKYNIEPDIAA-YIKKEFDKKYNPTWHCIVGRNFGSY 67
Query: 81 ITYECKSLLYMFFGGNLAICMWKCS 105
+T+E + +Y F+ G +AI ++K
Sbjct: 68 VTHETRHFIY-FYLGQVAILLFKSG 91
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM++++ + VD + A EK+ N+E+ + IK DKKY P WH +VG FG
Sbjct: 10 VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67
Query: 80 EITYECKSLLYMFFGGNLAICMWKCS 105
+T+E K +Y F+ G +AI ++K
Sbjct: 68 YVTHETKHFIY-FYLGQVAILLFKSG 92
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM++++ + VD + A EK+ N+E+ + IK DKKY P WH +VG FG
Sbjct: 7 VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 64
Query: 80 EITYECKSLLYMFFGGNLAICMWK 103
+T+E K +Y F+ G +AI ++K
Sbjct: 65 YVTHETKHFIY-FYLGQVAILLFK 87
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM++++ + VD + A EK+ N+E+ + IK DKKY P WH +VG FG
Sbjct: 12 VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 69
Query: 80 EITYECKSLLYMFFGGNLAICMWKCS 105
+T+E K +Y F+ G +AI ++K
Sbjct: 70 YVTHETKHFIY-FYLGQVAILLFKSG 94
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
+V DM +E+ + +D + A +K+ + A+ IK D+KY P WH VVG FG
Sbjct: 20 VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAH-IKKEFDRKYDPTWHCVVGRNFGSY 78
Query: 81 ITYECKSLLYMFFGGNLAICMWKCS 105
+T+E K+ +Y F+ G +AI ++K
Sbjct: 79 VTHETKNFIY-FYIGQVAILLFKSG 102
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
++ DM++E+ + V+ + A EK+ + A+ IK DKKY P WH +VG FG
Sbjct: 3 VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAH-IKKEFDKKYNPTWHCIVGRNFGSY 61
Query: 81 ITYECKSLLYMFFGGNLAICMWK 103
+T+E K +Y F+ G +AI ++K
Sbjct: 62 VTHETKHFIY-FYLGQVAILLFK 83
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFE 80
++ DM++E+ + V+ + A EK+ + A+ IK DKKY P WH +VG FG
Sbjct: 7 VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAH-IKKEFDKKYNPTWHCIVGRNFGSY 65
Query: 81 ITYECKSLLYMFFGGNLAICMWK 103
+T+E K +Y F+ G +AI ++K
Sbjct: 66 VTHETKHFIY-FYLGQVAILLFK 87
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGET--F 77
++ DM++++ + VD + A EK+ N+E+ + IK DKKY P WH +VG + F
Sbjct: 7 VIKNADMSEDMQQDAVDCATQAMEKY--NIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNF 64
Query: 78 GFEITYECKSLLYMFFGGNLAICMWKCS 105
G +T+E K +Y F+ G +AI ++K
Sbjct: 65 GSYVTHETKHFIY-FYLGQVAILLFKSG 91
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 21 LVHKTDMADELMTEVVDLCSMACEKHAANLEQ-ASRVIKDTMDKKYGPAWHVVVGETFGF 79
++ DM ++L + +D + A EK+ N+E+ + IK D+K+ P WH VVG FG
Sbjct: 7 VIKNADMPEDLQQDAIDCANQALEKY--NIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGS 64
Query: 80 EITYECKSLLYMFFGGNLAICMWKCS 105
+T+E +Y F+ G +A+ ++K
Sbjct: 65 YVTHETHHFIY-FYIGQVAVLLFKSG 89
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 20 PLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGF 79
P+V +D+ D+L +++ + A +K+ + A V K +D KYG WHV+VG+ FG
Sbjct: 14 PIVKASDITDKLKEDILTISKDALDKYQLERDIAGTV-KKQLDVKYGNTWHVIVGKNFGS 72
Query: 80 EITYECKSLLYMFFGGNLAICMWKCS 105
+T+E +Y F+ G LA ++K +
Sbjct: 73 YVTHEKGHFVY-FYIGPLAFLVFKTA 97
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 59 DTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNL 97
+ + KYG HVV + G E+ E K L FGG++
Sbjct: 30 EILKNKYGA--HVVNVDRIGHEVLEEVKEKLVELFGGSV 66
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 51 EQASRVIKD--TMDKKYGPAWHVVVGETFGFEITYE 84
E A R + T++K YGPAW + G +F E ++
Sbjct: 108 EHARRYLSKATTLEKTYGPAW-IAYGHSFAVESEHD 142
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 57 IKDTMDKKY----GPAWHVVVGETFGFEITYE 84
IK+ ++KKY A VV+G FEITYE
Sbjct: 44 IKEWLEKKYYSVLSKAVKVVLGNDATFEITYE 75
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 78 GFEITYECKSLLYMFFGGNLAIC 100
G EITY+C++ Y GN A C
Sbjct: 271 GDEITYQCRNGFYPATRGNTAKC 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,056,073
Number of Sequences: 62578
Number of extensions: 103452
Number of successful extensions: 233
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 21
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)