Query psy16997
Match_columns 105
No_of_seqs 114 out of 539
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:06:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3430|consensus 100.0 1.6E-41 3.5E-46 218.9 11.3 88 16-105 2-90 (90)
2 PTZ00059 dynein light chain; P 100.0 2.3E-40 5E-45 215.8 12.2 86 18-105 5-90 (90)
3 PLN03058 dynein light chain ty 100.0 5.9E-40 1.3E-44 225.6 12.3 96 8-105 24-122 (128)
4 PF01221 Dynein_light: Dynein 100.0 5.8E-39 1.3E-43 208.2 9.7 88 16-105 2-89 (89)
5 PF04155 Ground-like: Ground-l 97.0 0.011 2.5E-07 36.7 8.5 50 52-103 26-76 (76)
6 PF05075 DUF684: Protein of un 86.3 8.4 0.00018 30.3 8.9 52 53-104 191-251 (345)
7 PF10703 MoaF: Molybdenum cofa 82.9 2.2 4.8E-05 32.9 4.2 33 68-103 182-214 (265)
8 PF15650 Tox-REase-9: Restrict 77.9 2 4.3E-05 27.9 2.1 18 57-74 70-87 (89)
9 PF12006 DUF3500: Protein of u 70.1 48 0.001 25.9 8.5 46 19-65 213-261 (313)
10 PF12652 CotJB: CotJB protein; 60.4 16 0.00036 23.0 3.5 14 55-68 43-56 (78)
11 KOG2451|consensus 50.2 33 0.00072 28.4 4.5 45 17-62 48-94 (503)
12 PRK00286 xseA exodeoxyribonucl 45.7 59 0.0013 26.1 5.4 46 53-104 11-61 (438)
13 PF14900 DUF4493: Domain of un 42.3 63 0.0014 23.6 4.7 37 59-96 119-160 (235)
14 PF13742 tRNA_anti_2: OB-fold 41.5 93 0.002 19.8 5.3 48 53-104 7-59 (99)
15 PF12550 GCR1_C: Transcription 40.6 9 0.0002 23.9 -0.0 12 59-70 29-40 (81)
16 TIGR02084 leud 3-isopropylmala 40.5 26 0.00056 24.8 2.3 31 50-80 26-60 (156)
17 PF10925 DUF2680: Protein of u 36.8 70 0.0015 19.0 3.5 31 34-65 15-49 (59)
18 PF13798 PCYCGC: Protein of un 36.2 22 0.00048 25.4 1.4 43 22-67 105-147 (158)
19 COG0157 NadC Nicotinate-nucleo 35.8 46 0.00099 26.0 3.1 37 3-39 192-229 (280)
20 COG1570 XseA Exonuclease VII, 34.6 41 0.0009 27.8 2.9 48 53-104 11-61 (440)
21 cd03472 Rieske_RO_Alpha_BPDO_l 34.4 77 0.0017 21.2 3.8 38 61-104 1-39 (128)
22 PF06150 ChaB: ChaB; InterPro 33.9 1E+02 0.0022 18.1 4.5 45 25-70 7-54 (57)
23 PF08015 Pheromone: Fungal mat 32.7 24 0.00053 21.2 1.0 14 60-73 54-69 (69)
24 PF06925 MGDG_synth: Monogalac 31.9 47 0.001 22.9 2.5 26 52-77 3-28 (169)
25 PF10440 WIYLD: Ubiquitin-bind 31.8 59 0.0013 19.9 2.6 41 36-77 11-51 (65)
26 COG1352 CheR Methylase of chem 31.8 60 0.0013 24.9 3.2 52 17-71 127-178 (268)
27 PF10069 DICT: Sensory domain 30.8 62 0.0013 21.8 2.9 20 65-84 107-127 (129)
28 PF08776 VASP_tetra: VASP tetr 29.8 1.1E+02 0.0023 17.0 4.4 32 29-63 6-37 (40)
29 TIGR00237 xseA exodeoxyribonuc 29.7 2E+02 0.0043 23.4 6.0 46 53-104 5-55 (432)
30 cd01579 AcnA_Bact_Swivel Bacte 29.5 35 0.00076 23.1 1.4 17 64-80 45-61 (121)
31 PRK13007 succinyl-diaminopimel 29.5 2.5E+02 0.0054 21.2 6.4 40 27-66 1-42 (352)
32 PF06884 DUF1264: Protein of u 28.9 47 0.001 24.1 2.1 19 54-72 99-117 (171)
33 PF00627 UBA: UBA/TS-N domain; 28.8 93 0.002 16.1 3.2 21 37-57 17-37 (37)
34 TIGR01916 F420_cofE F420-0:gam 27.6 81 0.0017 24.1 3.2 32 50-81 124-155 (243)
35 PF07742 BTG: BTG family; Int 27.3 85 0.0019 21.1 3.0 20 51-70 28-47 (118)
36 PF11858 DUF3378: Domain of un 26.8 89 0.0019 19.6 2.9 21 84-105 28-48 (81)
37 PRK13293 F420-0--gamma-glutamy 26.7 85 0.0018 24.0 3.2 31 49-79 124-154 (245)
38 cd03538 Rieske_RO_Alpha_AntDO 25.9 1.8E+02 0.0039 19.8 4.6 43 56-104 10-53 (146)
39 cd05503 Bromo_BAZ2A_B_like Bro 25.4 94 0.002 19.7 2.9 36 29-65 59-97 (97)
40 PF12415 rpo132: Poxvirus DNA 25.4 1.2E+02 0.0026 16.1 2.8 9 23-31 7-15 (33)
41 PRK05583 ribosomal protein L7A 25.3 1.5E+02 0.0032 19.3 3.9 31 11-41 27-57 (104)
42 PF04622 ERG2_Sigma1R: ERG2 an 24.6 1.4E+02 0.0031 22.2 4.1 34 34-67 35-68 (216)
43 PF13382 Adenine_deam_C: Adeni 24.2 42 0.00092 24.0 1.2 28 63-90 34-70 (171)
44 PRK14023 homoaconitate hydrata 24.2 56 0.0012 23.3 1.7 28 53-80 31-62 (166)
45 PF10302 DUF2407: DUF2407 ubiq 23.8 37 0.00081 22.0 0.7 7 69-75 90-96 (97)
46 cd01578 AcnA_Mitochon_Swivel M 23.0 45 0.00098 23.6 1.1 16 65-80 67-82 (149)
47 PF00352 TBP: Transcription fa 22.8 1.5E+02 0.0033 18.2 3.4 26 80-105 30-58 (86)
48 KOG4194|consensus 22.7 48 0.001 29.2 1.3 22 66-87 586-607 (873)
49 PRK13888 conjugal transfer pro 22.5 34 0.00075 25.5 0.4 23 50-72 87-109 (206)
50 PF03398 Ist1: Regulator of Vp 22.4 56 0.0012 23.0 1.5 42 25-69 79-120 (165)
51 PRK07283 hypothetical protein; 21.6 2.2E+02 0.0047 18.1 4.1 31 11-41 28-58 (98)
52 PRK06489 hypothetical protein; 21.5 50 0.0011 25.4 1.1 30 53-82 138-168 (360)
53 PF06457 Ectatomin: Ectatomin; 21.0 60 0.0013 17.2 1.0 13 50-63 22-34 (34)
54 PF01743 PolyA_pol: Poly A pol 21.0 2.6E+02 0.0056 18.4 5.0 37 54-92 28-64 (126)
55 KOG3165|consensus 20.9 78 0.0017 23.1 1.9 24 54-77 49-72 (195)
56 KOG3990|consensus 20.6 76 0.0017 24.7 1.9 41 31-71 52-103 (305)
57 PRK07714 hypothetical protein; 20.2 2.3E+02 0.0051 18.0 4.0 30 12-41 29-58 (100)
No 1
>KOG3430|consensus
Probab=100.00 E-value=1.6e-41 Score=218.92 Aligned_cols=88 Identities=38% Similarity=0.732 Sum_probs=83.6
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEEC
Q psy16997 16 VHTYPLVHKTDMADELMTEVVDLCSMACEKHA-ANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFG 94 (105)
Q Consensus 16 ~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~-~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~ 94 (105)
+..+++|+.+|||++||++|+++|.+|+++|+ ++++ +|..||++||++||++||||||++|||+|||++++||||++
T Consensus 2 ~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~-iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~- 79 (90)
T KOG3430|consen 2 LERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKD-IAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL- 79 (90)
T ss_pred CCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe-
Confidence 56789999999999999999999999999999 5666 78999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeeC
Q psy16997 95 GNLAICMWKCS 105 (105)
Q Consensus 95 ~~~~~LlfKt~ 105 (105)
|.++|||||++
T Consensus 80 g~l~illfK~~ 90 (90)
T KOG3430|consen 80 GVLAILLFKCA 90 (90)
T ss_pred ceEEEEEEecC
Confidence 89999999985
No 2
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=2.3e-40 Score=215.80 Aligned_cols=86 Identities=33% Similarity=0.669 Sum_probs=82.8
Q ss_pred CCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCcE
Q psy16997 18 TYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNL 97 (105)
Q Consensus 18 ~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~ 97 (105)
.+++|+.+|||++||++|+++|.+|+++|+.++| +|++||++||++|||+||||||++|||+|||++++||||++ |++
T Consensus 5 ~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kd-iA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~-~~~ 82 (90)
T PTZ00059 5 RKAVVKNADMSEDMQQDAIDCANQALEKFNIEKD-IAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL-GQV 82 (90)
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE-CCE
Confidence 4678999999999999999999999999999988 69999999999999999999999999999999999999999 899
Q ss_pred EEEEeeeC
Q psy16997 98 AICMWKCS 105 (105)
Q Consensus 98 ~~LlfKt~ 105 (105)
+|||||++
T Consensus 83 ~vLlfK~~ 90 (90)
T PTZ00059 83 AILLFKSG 90 (90)
T ss_pred EEEEEecC
Confidence 99999985
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=225.56 Aligned_cols=96 Identities=23% Similarity=0.400 Sum_probs=89.6
Q ss_pred chhhHhhhcCCCceEEeCCCCHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEc
Q psy16997 8 SREEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHA---ANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYE 84 (105)
Q Consensus 8 ~~~~~~~~~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~---~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~ 84 (105)
.+++.-.+..+++.|+.+|||++||++|+++|.+|+++++ ++++ +|.+||++||++|||+||||||++|||+|||+
T Consensus 24 ~~~~~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekd-IA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe 102 (128)
T PLN03058 24 AKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKR-LALALKKEFDSAYGPAWHCIVGTSFGSYVTHS 102 (128)
T ss_pred hhhHHhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHH-HHHHHHHHHhhhhCCceEEEECCcEEEEEEEc
Confidence 4477778889999999999999999999999999999985 3566 79999999999999999999999999999999
Q ss_pred cCCEEEEEECCcEEEEEeeeC
Q psy16997 85 CKSLLYMFFGGNLAICMWKCS 105 (105)
Q Consensus 85 ~~~~i~F~~~~~~~~LlfKt~ 105 (105)
+++||||++ |+++||||||+
T Consensus 103 ~~~fIyF~i-g~~aiLLfKt~ 122 (128)
T PLN03058 103 TGGFLYFSI-DKVYILLFKTA 122 (128)
T ss_pred CCcEEEEEE-CCEEEEEEecc
Confidence 999999999 89999999985
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=5.8e-39 Score=208.16 Aligned_cols=88 Identities=34% Similarity=0.646 Sum_probs=82.0
Q ss_pred cCCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECC
Q psy16997 16 VHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGG 95 (105)
Q Consensus 16 ~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~ 95 (105)
...+++|+.+|||++||++|+++|.+|+++++++++ +|++||++||++|||+||||||++|||++||++++++||++ +
T Consensus 2 ~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~e-iA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~-~ 79 (89)
T PF01221_consen 2 SENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKE-IAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI-G 79 (89)
T ss_dssp GSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHH-HHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE-T
T ss_pred CCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHH-HHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE-C
Confidence 467899999999999999999999999999998888 79999999999999999999999999999999999999999 8
Q ss_pred cEEEEEeeeC
Q psy16997 96 NLAICMWKCS 105 (105)
Q Consensus 96 ~~~~LlfKt~ 105 (105)
+++||||||+
T Consensus 80 ~~~~li~kt~ 89 (89)
T PF01221_consen 80 NIAFLIFKTQ 89 (89)
T ss_dssp TEEEEEEEE-
T ss_pred CEEEEEEecC
Confidence 9999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.01 E-value=0.011 Score=36.74 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcccCCCceEEEEeC-CceeEEEEccCCEEEEEECCcEEEEEee
Q psy16997 52 QASRVIKDTMDKKYGPAWHVVVGE-TFGFEITYECKSLLYMFFGGNLAICMWK 103 (105)
Q Consensus 52 ~~A~~IK~~~D~kyg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~~~LlfK 103 (105)
..++.|.+.+.++||+.+-||++. +|...+... ..|.-... +++..++|+
T Consensus 26 ~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~-~g~~c~af~ 76 (76)
T PF04155_consen 26 ISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEK-NGVTCLAFA 76 (76)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeee-CCEEEEEEC
Confidence 368899999999999999999997 676666555 78888888 899999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=86.33 E-value=8.4 Score=30.33 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHHHhcccCCC-ceEEEEeC--------CceeEEEEccCCEEEEEECCcEEEEEeee
Q psy16997 53 ASRVIKDTMDKKYGP-AWHVVVGE--------TFGFEITYECKSLLYMFFGGNLAICMWKC 104 (105)
Q Consensus 53 ~A~~IK~~~D~kyg~-~WhcIVG~--------~Fgs~vth~~~~~i~F~~~~~~~~LlfKt 104 (105)
.|..||+.||+.... .+-+||-. .|.+...+....+|.-+-.|+..++||||
T Consensus 191 KAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS 251 (345)
T PF05075_consen 191 KADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS 251 (345)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence 589999999997543 58888822 12222234556666554348999999998
No 7
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=82.91 E-value=2.2 Score=32.87 Aligned_cols=33 Identities=24% Similarity=0.580 Sum_probs=25.5
Q ss_pred ceEEEEeCCceeEEEEccCCEEEEEECCcEEEEEee
Q psy16997 68 AWHVVVGETFGFEITYECKSLLYMFFGGNLAICMWK 103 (105)
Q Consensus 68 ~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~~~LlfK 103 (105)
+|||+.|..=|-. +....=|+++.+++.++.||
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~Wr 214 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWR 214 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEE
Confidence 8999999755533 45667778887789999987
No 8
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=77.91 E-value=2 Score=27.93 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=15.9
Q ss_pred HHHHhcccCCCceEEEEe
Q psy16997 57 IKDTMDKKYGPAWHVVVG 74 (105)
Q Consensus 57 IK~~~D~kyg~~WhcIVG 74 (105)
=|++|...||.+|.|||-
T Consensus 70 Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 70 YKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHhcCccCCCeeEEee
Confidence 478999999999999973
No 9
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=70.13 E-value=48 Score=25.94 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=32.2
Q ss_pred CceEEeCCCCHHHHHHHHHHHHHHHHHhccCH--HHHHHHH-HHHhcccC
Q psy16997 19 YPLVHKTDMADELMTEVVDLCSMACEKHAANL--EQASRVI-KDTMDKKY 65 (105)
Q Consensus 19 ~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~--~~~A~~I-K~~~D~ky 65 (105)
..=|..++|+.+.|+.+..++..-+..++.+. ..++ .| +..||+.|
T Consensus 213 ~~Gl~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~-~i~~~~ld~t~ 261 (313)
T PF12006_consen 213 PEGLAVSELTADQQELLLALIKEYLGRLPEEDAAERMA-EIEEAGLDETY 261 (313)
T ss_pred CCCcChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHhccccceE
Confidence 44478899999999999999988888777531 2222 34 55666654
No 10
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=60.44 E-value=16 Score=22.97 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.5
Q ss_pred HHHHHHhcccCCCc
Q psy16997 55 RVIKDTMDKKYGPA 68 (105)
Q Consensus 55 ~~IK~~~D~kyg~~ 68 (105)
+.+++.+.++|||-
T Consensus 43 ~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 43 KQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHhCCC
Confidence 34788999999984
No 11
>KOG2451|consensus
Probab=50.20 E-value=33 Score=28.38 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHhc
Q psy16997 17 HTYPLVHKTDMADELMTEVVDLCSMACEKHAA--NLEQASRVIKDTMD 62 (105)
Q Consensus 17 ~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~--~~~~~A~~IK~~~D 62 (105)
.+.+.=...||+-+.-++||+.|.+|++.|.+ -++. +..|++++|
T Consensus 48 ~geii~~V~~~~V~e~~kAI~aA~EaF~s~~~~takeR-s~lLrkwy~ 94 (503)
T KOG2451|consen 48 NGEIIGKVADMTVEEAEKAIDAAYEAFKSYRNLTAKER-SALLRKWYE 94 (503)
T ss_pred ccchhhcccCCcHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHH
Confidence 34555578999999999999999999999975 2443 445666654
No 12
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.70 E-value=59 Score=26.11 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=34.0
Q ss_pred HHHHHHHHhcccCCCceEEEEeC--CceeEEEEccCCEEEEEEC---CcEEEEEeee
Q psy16997 53 ASRVIKDTMDKKYGPAWHVVVGE--TFGFEITYECKSLLYMFFG---GNLAICMWKC 104 (105)
Q Consensus 53 ~A~~IK~~~D~kyg~~WhcIVG~--~Fgs~vth~~~~~i~F~~~---~~~~~LlfKt 104 (105)
+..+||..++..++..| |.|. +|- +-..-++||.+. ..+...+|++
T Consensus 11 l~~~ik~~le~~~~~v~--v~gEis~~~----~~~sGH~Yf~Lkd~~a~i~~~~~~~ 61 (438)
T PRK00286 11 LNRYVKSLLERDLGQVW--VRGEISNFT----RHSSGHWYFTLKDEIAQIRCVMFKG 61 (438)
T ss_pred HHHHHHHHHHhhCCcEE--EEEEeCCCe----eCCCCeEEEEEEcCCcEEEEEEEcC
Confidence 57899999999988887 5665 443 235557999994 3577888886
No 13
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=42.31 E-value=63 Score=23.64 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=28.7
Q ss_pred HHhcccCCCceEEEEeCCceeEEEE--ccC---CEEEEEECCc
Q psy16997 59 DTMDKKYGPAWHVVVGETFGFEITY--ECK---SLLYMFFGGN 96 (105)
Q Consensus 59 ~~~D~kyg~~WhcIVG~~Fgs~vth--~~~---~~i~F~~~~~ 96 (105)
..|.+.|+..|++-|...-+..+++ ... .-.||.. +.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~-~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKA-GE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEEC-CC
Confidence 4567778888999998765777777 555 8899998 66
No 14
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=41.50 E-value=93 Score=19.85 Aligned_cols=48 Identities=17% Similarity=0.434 Sum_probs=32.2
Q ss_pred HHHHHHHHhccc--CCCceEEEEeCCceeEEEEccCCEEEEEEC---CcEEEEEeee
Q psy16997 53 ASRVIKDTMDKK--YGPAWHVVVGETFGFEITYECKSLLYMFFG---GNLAICMWKC 104 (105)
Q Consensus 53 ~A~~IK~~~D~k--yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~---~~~~~LlfKt 104 (105)
+.++||+.+++. ++..| |.|.= |.++.-.+.++||.+. ..+...+|++
T Consensus 7 l~~~ik~~le~~~~~~~vw--V~GEI--s~~~~~~~gh~YftLkD~~a~i~~~~~~~ 59 (99)
T PF13742_consen 7 LNNYIKDLLERDPPLPNVW--VEGEI--SNLKRHSSGHVYFTLKDEEASISCVIFRS 59 (99)
T ss_pred HHHHHHHHHhcCCCcCCEE--EEEEE--eecEECCCceEEEEEEcCCcEEEEEEEHH
Confidence 578999999998 56777 55641 1222226778999984 2466677764
No 15
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=40.57 E-value=9 Score=23.86 Aligned_cols=12 Identities=42% Similarity=1.174 Sum_probs=9.8
Q ss_pred HHhcccCCCceE
Q psy16997 59 DTMDKKYGPAWH 70 (105)
Q Consensus 59 ~~~D~kyg~~Wh 70 (105)
+.|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 357899999995
No 16
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=40.48 E-value=26 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhc----ccCCCceEEEEeCCceeE
Q psy16997 50 LEQASRVIKDTMD----KKYGPAWHVVVGETFGFE 80 (105)
Q Consensus 50 ~~~~A~~IK~~~D----~kyg~~WhcIVG~~Fgs~ 80 (105)
.+.+++++-..+| +++.+..-+|.|+||||=
T Consensus 26 ~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~G 60 (156)
T TIGR02084 26 PKELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCG 60 (156)
T ss_pred HHHHHhhhhccCChhHHhhcCCCCEEEccCcccCC
Confidence 3345666555555 345566666667899964
No 17
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=36.83 E-value=70 Score=18.96 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcc----CHHHHHHHHHHHhcccC
Q psy16997 34 EVVDLCSMACEKHAA----NLEQASRVIKDTMDKKY 65 (105)
Q Consensus 34 ~ai~~a~~a~~~~~~----~~~~~A~~IK~~~D~ky 65 (105)
.+++.=...++++-. .++. |+.||+.+|+++
T Consensus 15 qm~e~kK~~idk~Ve~G~iTqeq-Ad~ik~~id~~~ 49 (59)
T PF10925_consen 15 QMLELKKQIIDKYVEAGVITQEQ-ADAIKKHIDQRQ 49 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHH
Confidence 334444444454432 3564 789999999874
No 18
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=36.23 E-value=22 Score=25.43 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=31.1
Q ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q psy16997 22 VHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGP 67 (105)
Q Consensus 22 I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~ 67 (105)
|...|+-. .....+++|..++..+..-+. + ..|++..|++|..
T Consensus 105 Vvwd~Hg~-~C~vCl~ia~~a~~~~~~Gks-~-~eIR~~ID~kYk~ 147 (158)
T PF13798_consen 105 VVWDDHGT-RCGVCLDIAVQAVQMYQEGKS-P-KEIRQYIDEKYKE 147 (158)
T ss_pred eeeccccc-ccHHHHHHHHHHHHHHHcCCC-H-HHHHHHHHHHHHh
Confidence 44445443 345678889999998887665 3 5799999999964
No 19
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=35.83 E-value=46 Score=25.97 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=29.9
Q ss_pred cchhcchhhHhhhcCCCceEEeCC-CCHHHHHHHHHHH
Q psy16997 3 DTEVVSREEEKKIVHTYPLVHKTD-MADELMTEVVDLC 39 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~~~d-M~~~mq~~ai~~a 39 (105)
|||++.-++..+.+...+.|+..| |+++...++++..
T Consensus 192 EVEvesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 192 EVEVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred EEEcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 778888888888888878776655 8998888888775
No 20
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=34.58 E-value=41 Score=27.81 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=34.8
Q ss_pred HHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECC---cEEEEEeee
Q psy16997 53 ASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGG---NLAICMWKC 104 (105)
Q Consensus 53 ~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~---~~~~LlfKt 104 (105)
+..+||..||..+|..| |-|. =|++|+-+....||.+++ .+...+|+.
T Consensus 11 ln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~ 61 (440)
T COG1570 11 LNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKG 61 (440)
T ss_pred HHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcC
Confidence 57899999999999988 4554 245564455589999954 456667764
No 21
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=34.42 E-value=77 Score=21.20 Aligned_cols=38 Identities=11% Similarity=0.358 Sum_probs=25.2
Q ss_pred hcccCCCceEEEEeC-CceeEEEEccCCEEEEEECCcEEEEEeee
Q psy16997 61 MDKKYGPAWHVVVGE-TFGFEITYECKSLLYMFFGGNLAICMWKC 104 (105)
Q Consensus 61 ~D~kyg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~~~LlfKt 104 (105)
|++-|...|+.|-=. .+. +++.+..+.+ ++..++|+|.
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~-~~~~i~l~r~ 39 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYM-GEDPVIVVRQ 39 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEE-CCceEEEEEC
Confidence 456688899986543 332 3455666777 6778888874
No 22
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=33.85 E-value=1e+02 Score=18.08 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCH---HHHHHHHHHHhcccCCCceE
Q psy16997 25 TDMADELMTEVVDLCSMACEKHAANL---EQASRVIKDTMDKKYGPAWH 70 (105)
Q Consensus 25 ~dM~~~mq~~ai~~a~~a~~~~~~~~---~~~A~~IK~~~D~kyg~~Wh 70 (105)
..||..-|+--++....|++.|.++. ..+=..+|+.+.+ -|+.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 46777777777777788888885532 1222458999999 788895
No 23
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=32.65 E-value=24 Score=21.20 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=9.1
Q ss_pred HhcccCCC--ceEEEE
Q psy16997 60 TMDKKYGP--AWHVVV 73 (105)
Q Consensus 60 ~~D~kyg~--~WhcIV 73 (105)
.+++..|+ +|-|||
T Consensus 54 d~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 54 DFERRGGGGAGAFCVI 69 (69)
T ss_pred CccccCCCCceEEEeC
Confidence 34555554 799987
No 24
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=31.88 E-value=47 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcccCCCceEEEEeCCc
Q psy16997 52 QASRVIKDTMDKKYGPAWHVVVGETF 77 (105)
Q Consensus 52 ~~A~~IK~~~D~kyg~~WhcIVG~~F 77 (105)
.+|+.|++.|...||+...|.|..-|
T Consensus 3 ~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 3 SAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 37899999999999999999987644
No 25
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=31.82 E-value=59 Score=19.87 Aligned_cols=41 Identities=20% Similarity=0.397 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCc
Q psy16997 36 VDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETF 77 (105)
Q Consensus 36 i~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~F 77 (105)
++.|.+++..+.-.+..+-.-||+-| +-||+.|--|=-.||
T Consensus 11 ~daA~dam~~lG~~~~~v~~vl~~LL-~lY~~nW~lIEed~Y 51 (65)
T PF10440_consen 11 IDAALDAMRQLGFSKKQVRPVLKNLL-KLYDGNWELIEEDNY 51 (65)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH-HHHcCCchhhhcccH
Confidence 46678888888776655555566555 467888977655454
No 26
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=31.80 E-value=60 Score=24.90 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=34.9
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEE
Q psy16997 17 HTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHV 71 (105)
Q Consensus 17 ~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~Whc 71 (105)
...+.|..+|.+....+.|..-...+-... +..-.++++++|++.-|+.|.+
T Consensus 127 ~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~---~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 127 GFRVKILATDIDLSVLEKARAGIYPSRELL---RGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred CCceEEEEEECCHHHHHHHhcCCCChhHhh---ccCCHHHHhhhEeecCCCcEEE
Confidence 447999999999997777755333222211 1222467899999998887765
No 27
>PF10069 DICT: Sensory domain found in DIguanylate Cyclases & Two-component systems; InterPro: IPR019278 This entry, found in various cyanobacterial sensor proteins that catalyse the reaction [ATP + protein L-histidine = ADP + protein N- phospho-L-histidine], has no known function.
Probab=30.82 E-value=62 Score=21.78 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=14.2
Q ss_pred CCCceEEEEe-CCceeEEEEc
Q psy16997 65 YGPAWHVVVG-ETFGFEITYE 84 (105)
Q Consensus 65 yg~~WhcIVG-~~Fgs~vth~ 84 (105)
....|+|||- .+|.|.+...
T Consensus 107 L~~EWfvvv~~~~~~~~LvA~ 127 (129)
T PF10069_consen 107 LRREWFVVVDGPHFAAALVAR 127 (129)
T ss_pred ceeEEEEEEECCCCeEEEEEe
Confidence 4568999985 5788776544
No 28
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=29.78 E-value=1.1e+02 Score=17.03 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcc
Q psy16997 29 DELMTEVVDLCSMACEKHAANLEQASRVIKDTMDK 63 (105)
Q Consensus 29 ~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~ 63 (105)
+.|++++++..+.-+++.+. ++ -+.|+++|-+
T Consensus 6 e~~KqEIL~EvrkEl~K~K~--EI-IeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVKE--EI-IEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHhc
Confidence 35788999999888887774 33 3668888754
No 29
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.65 E-value=2e+02 Score=23.38 Aligned_cols=46 Identities=17% Similarity=0.394 Sum_probs=34.0
Q ss_pred HHHHHHHHhcccCCCceEEEEeC--CceeEEEEccCCEEEEEEC---CcEEEEEeee
Q psy16997 53 ASRVIKDTMDKKYGPAWHVVVGE--TFGFEITYECKSLLYMFFG---GNLAICMWKC 104 (105)
Q Consensus 53 ~A~~IK~~~D~kyg~~WhcIVG~--~Fgs~vth~~~~~i~F~~~---~~~~~LlfKt 104 (105)
+..+||..++..|+..| |.|. ||- .| ..-++||.+. ..+...+|++
T Consensus 5 l~~~ik~~le~~~~~v~--V~GEisn~~---~~-~sGH~YFtLkD~~a~i~~vmf~~ 55 (432)
T TIGR00237 5 LNAQIKALLEATFLQVW--IQGEISNFT---QP-VSGHWYFTLKDENAQVRCVMFRG 55 (432)
T ss_pred HHHHHHHHHHhhCCcEE--EEEEecCCe---eC-CCceEEEEEEcCCcEEEEEEEcC
Confidence 56889999999899888 5564 554 23 4447999994 3678888886
No 30
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=29.52 E-value=35 Score=23.11 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=11.2
Q ss_pred cCCCceEEEEeCCceeE
Q psy16997 64 KYGPAWHVVVGETFGFE 80 (105)
Q Consensus 64 kyg~~WhcIVG~~Fgs~ 80 (105)
++|..+-.|.|++|||=
T Consensus 45 ~~~~~~iiVaG~nFG~G 61 (121)
T cd01579 45 KAAGPGFIVGGENYGQG 61 (121)
T ss_pred ccCCCeEEEcCCcCCCC
Confidence 34555666667899963
No 31
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=29.47 E-value=2.5e+02 Score=21.18 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHhcccCC
Q psy16997 27 MADELMTEVVDLCSMACEKHAA--NLEQASRVIKDTMDKKYG 66 (105)
Q Consensus 27 M~~~mq~~ai~~a~~a~~~~~~--~~~~~A~~IK~~~D~kyg 66 (105)
|+.++..++++...++++..+. +...+|++|++.|.+.+|
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~ 42 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRALPH 42 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcC
Confidence 4555667888888888876543 223478999999998633
No 32
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=28.92 E-value=47 Score=24.09 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=13.1
Q ss_pred HHHHHHHhcccCCCceEEE
Q psy16997 54 SRVIKDTMDKKYGPAWHVV 72 (105)
Q Consensus 54 A~~IK~~~D~kyg~~WhcI 72 (105)
...+-+.+=++||.+||--
T Consensus 99 e~~~m~~l~~tYGKt~HtW 117 (171)
T PF06884_consen 99 EKAEMEKLVKTYGKTWHTW 117 (171)
T ss_pred HHHHHHHHHhhhCCeEEec
Confidence 3445556667899999853
No 33
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=28.79 E-value=93 Score=16.05 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=14.1
Q ss_pred HHHHHHHHHhccCHHHHHHHH
Q psy16997 37 DLCSMACEKHAANLEQASRVI 57 (105)
Q Consensus 37 ~~a~~a~~~~~~~~~~~A~~I 57 (105)
+.|.+|+...+.+-+.++++|
T Consensus 17 ~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 17 EQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHhC
Confidence 367888888777666555543
No 34
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=27.62 E-value=81 Score=24.06 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcccCCCceEEEEeCCceeEE
Q psy16997 50 LEQASRVIKDTMDKKYGPAWHVVVGETFGFEI 81 (105)
Q Consensus 50 ~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~v 81 (105)
-+..|+.|++.|-+++|..=-|||..+||--.
T Consensus 124 Pd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~ 155 (243)
T TIGR01916 124 PDASAEKIRRGLRELTGVDVGVIITDTNGRPF 155 (243)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEECCCCCcc
Confidence 35568999999999999999999999988543
No 35
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=27.28 E-value=85 Score=21.11 Aligned_cols=20 Identities=10% Similarity=0.438 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcccCCCceE
Q psy16997 51 EQASRVIKDTMDKKYGPAWH 70 (105)
Q Consensus 51 ~~~A~~IK~~~D~kyg~~Wh 70 (105)
+..++.|.+.|-.+|.++|+
T Consensus 28 ~~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 28 DRFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 44577888889899999887
No 36
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=26.84 E-value=89 Score=19.62 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=15.5
Q ss_pred ccCCEEEEEECCcEEEEEeeeC
Q psy16997 84 ECKSLLYMFFGGNLAICMWKCS 105 (105)
Q Consensus 84 ~~~~~i~F~~~~~~~~LlfKt~ 105 (105)
.++..+.++. ++..|.+|+||
T Consensus 28 ~p~~~f~aK~-~~~tIt~Y~SG 48 (81)
T PF11858_consen 28 PPYAVFQAKY-NGVTITAYKSG 48 (81)
T ss_dssp -TTEEEEEEE-TTEEEEEETTS
T ss_pred CCCEEEEEeC-CCeEEEEEeCC
Confidence 3555666777 79999999885
No 37
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=26.69 E-value=85 Score=23.97 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhcccCCCceEEEEeCCcee
Q psy16997 49 NLEQASRVIKDTMDKKYGPAWHVVVGETFGF 79 (105)
Q Consensus 49 ~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs 79 (105)
+-+.-|+.|++.|-+++|..=-|||..+||-
T Consensus 124 DPd~SA~~ir~~l~~~~g~~v~VIItDt~gr 154 (245)
T PRK13293 124 NPDESAERIREGLEELTGKKVGVIITDTNGR 154 (245)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3455689999999999999999999999984
No 38
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=25.94 E-value=1.8e+02 Score=19.82 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHhcccCCCceEEEEeC-CceeEEEEccCCEEEEEECCcEEEEEeee
Q psy16997 56 VIKDTMDKKYGPAWHVVVGE-TFGFEITYECKSLLYMFFGGNLAICMWKC 104 (105)
Q Consensus 56 ~IK~~~D~kyg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~~~LlfKt 104 (105)
....++++-|...|+.|.-. ... +++.++-+.+ ++..++|+|.
T Consensus 10 ~~~~e~~~i~~~~W~~v~~~~elp-----~~G~~~~~~i-~g~~i~v~r~ 53 (146)
T cd03538 10 IFALEMERLFGNAWIYVGHESQVP-----NPGDYITTRI-GDQPVVMVRH 53 (146)
T ss_pred HHHHHHHHHhhcCCEEEEEHHHCC-----CCCCEEEEEE-CCeeEEEEEC
Confidence 45677888889999986542 331 3567777888 6788888874
No 39
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=25.44 E-value=94 Score=19.68 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhcc-CH--HHHHHHHHHHhcccC
Q psy16997 29 DELMTEVVDLCSMACEKHAA-NL--EQASRVIKDTMDKKY 65 (105)
Q Consensus 29 ~~mq~~ai~~a~~a~~~~~~-~~--~~~A~~IK~~~D~ky 65 (105)
.+...++--+...|.. |+. +. -.+|..|++.|++++
T Consensus 59 ~ef~~D~~li~~Na~~-yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 59 EEFAEDVRLVFDNCET-FNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHhC
Confidence 3445555555555544 443 22 235888999998874
No 40
>PF12415 rpo132: Poxvirus DNA dependent RNA polymerase; InterPro: IPR024390 All three classes of poxvirus genes - early, intermediate and late - are transcribed by the viral RNA polymerase compex []. This complex is composed of nine distinct subunits which total more than 500kDa in mass. The two largest subunits (147 and 136kDa) are homologous to the largest subunits of eukaryotic and prokaryotic RNA polymerases and, like them, are thought to form a claw-shaped structure whose cleft is the site of template interaction and phosphodiester bond formation. While the smaller subunits of poxvirus RNA polymerase show much less similarity, if any, to the smaller subunits of the eukaryotic and prokaryotic enzymes, it is thought that they may play a similar role in interacting with transcription factors. The 132kDa subunit is the second largest subunit of the poxvirus DNA dependent RNA polymerase and shows structural similarity to the second-largest RNA polymerase subunits of eubacteria, archaebacteria, and eukaryotes.
Probab=25.40 E-value=1.2e+02 Score=16.11 Aligned_cols=9 Identities=33% Similarity=0.420 Sum_probs=6.3
Q ss_pred EeCCCCHHH
Q psy16997 23 HKTDMADEL 31 (105)
Q Consensus 23 ~~~dM~~~m 31 (105)
+.-|||++.
T Consensus 7 Lsydmp~ei 15 (33)
T PF12415_consen 7 LSYDMPPEI 15 (33)
T ss_pred hccCCCHHH
Confidence 456888873
No 41
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=25.26 E-value=1.5e+02 Score=19.32 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=25.1
Q ss_pred hHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Q psy16997 11 EEKKIVHTYPLVHKTDMADELMTEVVDLCSM 41 (105)
Q Consensus 11 ~~~~~~~~~~~I~~~dM~~~mq~~ai~~a~~ 41 (105)
...++-....+|+.+|.+++.++++.+.|..
T Consensus 27 ~aik~gk~~lVI~A~D~s~~~kkki~~~~~~ 57 (104)
T PRK05583 27 EAIKKKKVYLIIISNDISENSKNKFKNYCNK 57 (104)
T ss_pred HHHHcCCceEEEEeCCCCHhHHHHHHHHHHH
Confidence 3445566789999999999999999887663
No 42
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=24.61 E-value=1.4e+02 Score=22.24 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q psy16997 34 EVVDLCSMACEKHAANLEQASRVIKDTMDKKYGP 67 (105)
Q Consensus 34 ~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~ 67 (105)
.+.++|.+++.+++.+.+.+-..|-++|-++|++
T Consensus 35 ~l~~ia~~~ia~~~~~~~~~~~~l~~~L~~~y~~ 68 (216)
T PF04622_consen 35 VLHEIAKKAIARHPNDTEEILSDLVDELRKKYPD 68 (216)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhHCCC
Confidence 4456677777778766444557788899999987
No 43
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=24.23 E-value=42 Score=24.04 Aligned_cols=28 Identities=11% Similarity=0.350 Sum_probs=13.2
Q ss_pred ccCCCceEEEEe--CCc-------eeEEEEccCCEEE
Q psy16997 63 KKYGPAWHVVVG--ETF-------GFEITYECKSLLY 90 (105)
Q Consensus 63 ~kyg~~WhcIVG--~~F-------gs~vth~~~~~i~ 90 (105)
.|||+.=++.+| +.| +|+++|++.+.+-
T Consensus 34 ~R~~~~g~~~~g~v~Gfg~~~GAiAsS~ahDshniiv 70 (171)
T PF13382_consen 34 ERHGGTGNIGIGFVKGFGLKRGAIASSVAHDSHNIIV 70 (171)
T ss_dssp --SSSS--EEEEEEESS--BSSEEEES--TTT--EEE
T ss_pred EcCCCCCCEEEEEEeCCcccCCeEEEEcccCCCCEEE
Confidence 467773155555 455 4889999888774
No 44
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=24.19 E-value=56 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=16.6
Q ss_pred HHHHHHHHhc----ccCCCceEEEEeCCceeE
Q psy16997 53 ASRVIKDTMD----KKYGPAWHVVVGETFGFE 80 (105)
Q Consensus 53 ~A~~IK~~~D----~kyg~~WhcIVG~~Fgs~ 80 (105)
+++++-..+| +++.+..-.|.|+||||=
T Consensus 31 l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~G 62 (166)
T PRK14023 31 FHNYAFAHLRPEFASTVRPGDILVAGRNFGLG 62 (166)
T ss_pred HHhhhccCCChhhHhhcCCCCEEEccCcccCC
Confidence 4555444444 445566656667899964
No 45
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=23.84 E-value=37 Score=22.04 Aligned_cols=7 Identities=29% Similarity=0.743 Sum_probs=5.8
Q ss_pred eEEEEeC
Q psy16997 69 WHVVVGE 75 (105)
Q Consensus 69 WhcIVG~ 75 (105)
=||+||.
T Consensus 90 IhCsIGd 96 (97)
T PF10302_consen 90 IHCSIGD 96 (97)
T ss_pred EEEeccC
Confidence 4999995
No 46
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=22.97 E-value=45 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.0
Q ss_pred CCCceEEEEeCCceeE
Q psy16997 65 YGPAWHVVVGETFGFE 80 (105)
Q Consensus 65 yg~~WhcIVG~~Fgs~ 80 (105)
-|-.|-+|.|++||+=
T Consensus 67 ~g~~~iIVaG~nyG~G 82 (149)
T cd01578 67 HGIKWVVIGDENYGEG 82 (149)
T ss_pred cCCCeEEEccCccCCC
Confidence 3557888888999863
No 47
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.82 E-value=1.5e+02 Score=18.24 Aligned_cols=26 Identities=12% Similarity=0.214 Sum_probs=16.9
Q ss_pred EEEEccCC--EEEEEEC-CcEEEEEeeeC
Q psy16997 80 EITYECKS--LLYMFFG-GNLAICMWKCS 105 (105)
Q Consensus 80 ~vth~~~~--~i~F~~~-~~~~~LlfKt~ 105 (105)
.+.|+|+. .+.+++. ....++||+||
T Consensus 30 ~~~YePe~fpgl~~r~~~p~~t~~IF~sG 58 (86)
T PF00352_consen 30 NVEYEPERFPGLIYRLRNPKATVLIFSSG 58 (86)
T ss_dssp TEEEETTTESSEEEEETTTTEEEEEETTS
T ss_pred CcEEeeccCCeEEEeecCCcEEEEEEcCC
Confidence 35677773 3455663 37888888875
No 48
>KOG4194|consensus
Probab=22.73 E-value=48 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.4
Q ss_pred CCceEEEEeCCceeEEEEccCC
Q psy16997 66 GPAWHVVVGETFGFEITYECKS 87 (105)
Q Consensus 66 g~~WhcIVG~~Fgs~vth~~~~ 87 (105)
.+..||||-..|||.+++..+-
T Consensus 586 ~grYQCVvtN~FGStysqk~Kl 607 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKL 607 (873)
T ss_pred CceEEEEEecccCcchhheeEE
Confidence 5789999999999999876543
No 49
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=22.53 E-value=34 Score=25.49 Aligned_cols=23 Identities=13% Similarity=0.344 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcccCCCceEEE
Q psy16997 50 LEQASRVIKDTMDKKYGPAWHVV 72 (105)
Q Consensus 50 ~~~~A~~IK~~~D~kyg~~WhcI 72 (105)
-...|-.|++.|++++|-.|.+|
T Consensus 87 V~vGAWILr~~i~~~~G~~W~AV 109 (206)
T PRK13888 87 FDLAAWRLRMHIRNDKGDLWTKA 109 (206)
T ss_pred HHHHHHHHHHHHHHhhCchHHHH
Confidence 34557788999998999999986
No 50
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=22.41 E-value=56 Score=23.04 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCce
Q psy16997 25 TDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAW 69 (105)
Q Consensus 25 ~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~W 69 (105)
.+.|+++.+.|..+...| ...++-.+ . ..|++.|-.+||+.|
T Consensus 79 k~~p~~l~eAi~siiyAa-~r~~elpE-L-~~vr~~l~~kyG~~f 120 (165)
T PF03398_consen 79 KECPPELKEAISSIIYAA-PRCGELPE-L-QEVRKQLAEKYGKEF 120 (165)
T ss_dssp TSSSCCHHHHHHHHHHHH-HHHTTTCC-H-HHHHHHHHCCC-HHH
T ss_pred cCCCHHHHHHHHHHHHHh-hhccCChh-H-HHHHHHHHHHhCHHH
Confidence 677888777665554444 44443344 3 468999999999866
No 51
>PRK07283 hypothetical protein; Provisional
Probab=21.58 E-value=2.2e+02 Score=18.15 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=24.7
Q ss_pred hHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Q psy16997 11 EEKKIVHTYPLVHKTDMADELMTEVVDLCSM 41 (105)
Q Consensus 11 ~~~~~~~~~~~I~~~dM~~~mq~~ai~~a~~ 41 (105)
.+.+.-....+|+.+|-+++..+.+.+.|..
T Consensus 28 ~aik~gk~~lVi~A~Das~~~~kk~~~~~~~ 58 (98)
T PRK07283 28 KAIQSGQAKLVFLANDAGPNLTKKVTDKSNY 58 (98)
T ss_pred HHHHcCCccEEEEeCCCCHHHHHHHHHHHHH
Confidence 3445556788999999999999999886654
No 52
>PRK06489 hypothetical protein; Provisional
Probab=21.47 E-value=50 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccCC-CceEEEEeCCceeEEE
Q psy16997 53 ASRVIKDTMDKKYG-PAWHVVVGETFGFEIT 82 (105)
Q Consensus 53 ~A~~IK~~~D~kyg-~~WhcIVG~~Fgs~vt 82 (105)
.|+.+...+....| ..+++|||.|+|+.+.
T Consensus 138 ~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vA 168 (360)
T PRK06489 138 MVEAQYRLVTEGLGVKHLRLILGTSMGGMHA 168 (360)
T ss_pred HHHHHHHHHHHhcCCCceeEEEEECHHHHHH
Confidence 34444444433334 4577899999997653
No 53
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=21.03 E-value=60 Score=17.15 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhcc
Q psy16997 50 LEQASRVIKDTMDK 63 (105)
Q Consensus 50 ~~~~A~~IK~~~D~ 63 (105)
.+ +|.+||++-|+
T Consensus 22 g~-iat~ik~~c~k 34 (34)
T PF06457_consen 22 GS-IATMIKRKCDK 34 (34)
T ss_dssp CC-HHHHHHHHCH-
T ss_pred cc-HHHHHHHHhCC
Confidence 34 68999998764
No 54
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=20.95 E-value=2.6e+02 Score=18.42 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEE
Q psy16997 54 SRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMF 92 (105)
Q Consensus 54 A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~ 92 (105)
...+.+.|-++++..|++ |++|+..--+..+..+.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 28 PEEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 356788899999998887 9999987777766665554
No 55
>KOG3165|consensus
Probab=20.93 E-value=78 Score=23.15 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.5
Q ss_pred HHHHHHHhcccCCCceEEEEeCCc
Q psy16997 54 SRVIKDTMDKKYGPAWHVVVGETF 77 (105)
Q Consensus 54 A~~IK~~~D~kyg~~WhcIVG~~F 77 (105)
++.+--..+...||.+|+||-.||
T Consensus 49 ~s~lffqyn~~L~PPy~vivDTNF 72 (195)
T KOG3165|consen 49 PSALFFQYNTTLGPPYHVIVDTNF 72 (195)
T ss_pred chhHHHhcccccCCCeEEEEecch
Confidence 334555677889999999998776
No 56
>KOG3990|consensus
Probab=20.60 E-value=76 Score=24.71 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHhcc------cCCCceEE
Q psy16997 31 LMTEVVDLCSMACEKHAAN-----LEQASRVIKDTMDK------KYGPAWHV 71 (105)
Q Consensus 31 mq~~ai~~a~~a~~~~~~~-----~~~~A~~IK~~~D~------kyg~~Whc 71 (105)
.-+.+...|..++.+|.+. -.++|.||-..-++ +|||.-.|
T Consensus 52 kt~t~CkkCah~~~kfG~P~pC~~CkiiaAF~g~kc~rctn~e~kyGpp~~C 103 (305)
T KOG3990|consen 52 KTNTICKKCAHNVRKFGTPKPCQYCKIIAAFIGRKCQRCTNSEKKYGPPLLC 103 (305)
T ss_pred hhhhHHHHHHHHHHhcCCCCcchhhhhhhhhccchhhhccchhhccCCchhH
Confidence 3346777888999999863 35778899998888 99997655
No 57
>PRK07714 hypothetical protein; Provisional
Probab=20.16 E-value=2.3e+02 Score=17.98 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=23.7
Q ss_pred HhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Q psy16997 12 EKKIVHTYPLVHKTDMADELMTEVVDLCSM 41 (105)
Q Consensus 12 ~~~~~~~~~~I~~~dM~~~mq~~ai~~a~~ 41 (105)
..++-....+|+.+|.++....++...|..
T Consensus 29 al~~g~~~lViiA~D~s~~~~~ki~~~~~~ 58 (100)
T PRK07714 29 EVRSGKAKLVLLSEDASVNTTKKITDKCTY 58 (100)
T ss_pred HHHhCCceEEEEeCCCCHHHHHHHHHHHHh
Confidence 344556788999999999999998776654
Done!