Query psy16997
Match_columns 105
No_of_seqs 114 out of 539
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:07:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 7.6E-43 2.6E-47 226.1 8.2 87 17-105 3-89 (89)
2 1yo3_A Dynein light chain 1; s 100.0 6.4E-42 2.2E-46 226.8 10.1 90 14-105 13-102 (102)
3 4ds1_A Dynein light chain 1, c 100.0 5.4E-42 1.9E-46 225.3 9.3 87 17-105 11-97 (97)
4 1use_A VAsp, vasodilator-stimu 58.4 21 0.00071 19.6 4.2 34 29-65 10-43 (45)
5 1wgn_A UBAP1, ubiquitin associ 57.1 19 0.00064 21.1 4.0 28 37-64 34-61 (63)
6 3idw_A Actin cytoskeleton-regu 52.8 1.7 5.7E-05 26.4 -1.1 38 27-68 31-68 (72)
7 3e9v_A Protein BTG2; B-cell tr 47.3 16 0.00056 23.9 3.0 44 26-70 1-48 (120)
8 3id6_A NOP5, PRE mRNA splicing 31.1 67 0.0023 23.6 4.5 40 24-64 222-261 (268)
9 2hjq_A Hypothetical protein YQ 29.6 23 0.00077 22.8 1.4 39 25-64 63-101 (111)
10 3gzx_A Biphenyl dioxygenase su 24.3 1.6E+02 0.0054 23.0 5.8 43 56-104 45-88 (457)
11 3vba_A Isopropylmalate/citrama 24.0 26 0.00089 24.3 1.1 16 64-79 50-65 (176)
12 1eci_B Ectatomin; pore-forming 22.7 41 0.0014 17.0 1.4 13 50-63 22-34 (34)
13 2bmo_A Oxygenase-alpha NBDO; n 22.6 1.7E+02 0.0059 22.3 5.6 42 57-104 25-67 (447)
14 3gxq_A Putative regulator of t 21.8 1.1E+02 0.0037 16.7 3.9 36 25-62 16-51 (54)
15 3k6g_A Telomeric repeat-bindin 21.2 93 0.0032 20.0 3.2 43 29-71 7-63 (111)
16 4fz4_A 0197-18KD, uncharacteri 20.3 1.9E+02 0.0066 19.6 4.8 31 36-67 86-116 (154)
17 1wj7_A Hypothetical protein (R 20.1 53 0.0018 21.0 1.8 35 38-75 56-91 (104)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=7.6e-43 Score=226.14 Aligned_cols=87 Identities=29% Similarity=0.604 Sum_probs=83.6
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCc
Q psy16997 17 HTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGN 96 (105)
Q Consensus 17 ~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~ 96 (105)
..+++|+.+|||++||++|+++|.+|+++|+.+++ +|++||++||++|||+||||||++|||+|||++++||||++ |+
T Consensus 3 ~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~-iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~-g~ 80 (89)
T 3rjs_A 3 DRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKD-IAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI-GQ 80 (89)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE-TT
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHH-HHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE-CC
Confidence 35799999999999999999999999999998888 68999999999999999999999999999999999999999 89
Q ss_pred EEEEEeeeC
Q psy16997 97 LAICMWKCS 105 (105)
Q Consensus 97 ~~~LlfKt~ 105 (105)
++||||||+
T Consensus 81 ~~iLlfKtg 89 (89)
T 3rjs_A 81 VAVLLFKSG 89 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999996
No 2
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=6.4e-42 Score=226.79 Aligned_cols=90 Identities=32% Similarity=0.628 Sum_probs=82.8
Q ss_pred hhcCCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEE
Q psy16997 14 KIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFF 93 (105)
Q Consensus 14 ~~~~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~ 93 (105)
..++++++|+.+|||++||++|+++|.+|+++|+++++ +|++||++||++|||+||||||++|||+|||++++||||++
T Consensus 13 ~~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekd-iA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~ 91 (102)
T 1yo3_A 13 GLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKD-IAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYI 91 (102)
T ss_dssp -----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHH-HHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEE
T ss_pred ccCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHH-HHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEE
Confidence 45678999999999999999999999999999998887 68999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeeC
Q psy16997 94 GGNLAICMWKCS 105 (105)
Q Consensus 94 ~~~~~~LlfKt~ 105 (105)
|+++||||||+
T Consensus 92 -g~~aiLlfKt~ 102 (102)
T 1yo3_A 92 -GQVAILLFKSG 102 (102)
T ss_dssp -TTEEEEEEECC
T ss_pred -CCEEEEEEecC
Confidence 89999999986
No 3
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-42 Score=225.31 Aligned_cols=87 Identities=30% Similarity=0.623 Sum_probs=83.6
Q ss_pred CCCceEEeCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCceEEEEeCCceeEEEEccCCEEEEEECCc
Q psy16997 17 HTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGN 96 (105)
Q Consensus 17 ~~~~~I~~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~ 96 (105)
..+++|+.+|||++||++|+++|.+|+++|+++++ +|++||++||++|||+||||||++|||+|||++++||||++ |+
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~-iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~-g~ 88 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERD-IAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYI-GP 88 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHH-HHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEE-TT
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEE-CC
Confidence 56899999999999999999999999999998888 68999999999999999999999999999999999999999 89
Q ss_pred EEEEEeeeC
Q psy16997 97 LAICMWKCS 105 (105)
Q Consensus 97 ~~~LlfKt~ 105 (105)
++||||||+
T Consensus 89 ~aiLlfKtg 97 (97)
T 4ds1_A 89 LAFLVFKTA 97 (97)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999986
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=58.44 E-value=21 Score=19.57 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccC
Q psy16997 29 DELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKY 65 (105)
Q Consensus 29 ~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~ky 65 (105)
+.+++++++..+.-+++.+. ++ -+.|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K~--EI-IeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVKE--EI-IEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHhcC
Confidence 35788899988888887773 44 477999998763
No 5
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.14 E-value=19 Score=21.14 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhccc
Q psy16997 37 DLCSMACEKHAANLEQASRVIKDTMDKK 64 (105)
Q Consensus 37 ~~a~~a~~~~~~~~~~~A~~IK~~~D~k 64 (105)
+.|..||+..+++-+.++++|-.+.|-.
T Consensus 34 ~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 34 ECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 4689999999988888999999988854
No 6
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=52.75 E-value=1.7 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q psy16997 27 MADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPA 68 (105)
Q Consensus 27 M~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~~ 68 (105)
|+++|..++-......|.- .+-|+++ |.+++|++||+.
T Consensus 31 i~e~mL~Dl~~~~Lr~LGi--~eGDIIr--Vmk~l~~k~~r~ 68 (72)
T 3idw_A 31 LTEDMMPDINNSMLRTLGL--REGDIVR--VMKHLDKKFGRE 68 (72)
T ss_dssp CCGGGGGGCCHHHHHHTTC--CHHHHHH--HHHHHHHHTTC-
T ss_pred CCHHHHhhCCHHHHHHcCC--chhhHHH--HHHHHHHHhCcC
Confidence 4444444443333333331 2567664 889999999874
No 7
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=47.35 E-value=16 Score=23.85 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc-cC---HHHHHHHHHHHhcccCCCceE
Q psy16997 26 DMADELMTEVVDLCSMACEKHA-AN---LEQASRVIKDTMDKKYGPAWH 70 (105)
Q Consensus 26 dM~~~mq~~ai~~a~~a~~~~~-~~---~~~~A~~IK~~~D~kyg~~Wh 70 (105)
||-.|.+..+ .-....+.+.. .. -+..++.|.+.|-++|-++|+
T Consensus 1 ~M~~EI~~av-~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAV-GFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555544433 33334444332 12 244578899999999999998
No 8
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=31.06 E-value=67 Score=23.63 Aligned_cols=40 Identities=5% Similarity=0.125 Sum_probs=31.5
Q ss_pred eCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhccc
Q psy16997 24 KTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKK 64 (105)
Q Consensus 24 ~~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~k 64 (105)
-.||+++..+.+...|.++++.+..-+ .+.+||+..|.+-
T Consensus 222 G~~ise~DL~~I~~~a~~v~~L~e~R~-~L~~Yl~srM~~~ 261 (268)
T 3id6_A 222 GADISEDDLSAMRMIANTILDLYNIRR-NLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 378999999999999999998766434 4689999999864
No 9
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=29.64 E-value=23 Score=22.79 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhccc
Q psy16997 25 TDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKK 64 (105)
Q Consensus 25 ~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D~k 64 (105)
-+|+..-|+.||.-.-.-...+.++.+.|| +|=+..|.+
T Consensus 63 K~m~Kaeqe~iI~~LG~~~~d~KNe~ERIa-~ILe~~~~~ 101 (111)
T 2hjq_A 63 KGMNKAEHESIISNLGRNPSDFKNADERIA-YILKQIDNK 101 (111)
T ss_dssp HTCCHHHHHHHHHHHTCCTTSCCSHHHHHH-HHHHHHTTC
T ss_pred hhhhhhhHHHHHHHhCCCchhhcChhHHHH-HHHHHcccc
Confidence 378888898888766444444555677776 788888887
No 10
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=24.30 E-value=1.6e+02 Score=22.98 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHHHhcccCCCceEEEEeC-CceeEEEEccCCEEEEEECCcEEEEEeee
Q psy16997 56 VIKDTMDKKYGPAWHVVVGE-TFGFEITYECKSLLYMFFGGNLAICMWKC 104 (105)
Q Consensus 56 ~IK~~~D~kyg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~~~LlfKt 104 (105)
....++++-|+..|++|--. ... +++.++-+.+ ++..++|||.
T Consensus 45 ~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i-~~~~vvv~R~ 88 (457)
T 3gzx_A 45 LYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYM-GEDPVIMVRQ 88 (457)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEE-TTEEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEE-CCEEEEEEEC
Confidence 45678899999999998653 331 2345666778 7788888884
No 11
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=24.03 E-value=26 Score=24.31 Aligned_cols=16 Identities=38% Similarity=0.543 Sum_probs=11.5
Q ss_pred cCCCceEEEEeCCcee
Q psy16997 64 KYGPAWHVVVGETFGF 79 (105)
Q Consensus 64 kyg~~WhcIVG~~Fgs 79 (105)
+|-+.+-+|.|+|||+
T Consensus 50 ~~~~g~IlVaG~NFG~ 65 (176)
T 3vba_A 50 KVKPGDIIVGGKNFGC 65 (176)
T ss_dssp HCCTTCEEEECTTBTB
T ss_pred hcCCCCEEEeCCCccC
Confidence 4555677777889986
No 12
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=22.75 E-value=41 Score=16.98 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhcc
Q psy16997 50 LEQASRVIKDTMDK 63 (105)
Q Consensus 50 ~~~~A~~IK~~~D~ 63 (105)
.+ +|.+||++-|+
T Consensus 22 g~-iat~ik~~c~k 34 (34)
T 1eci_B 22 GS-IATMIKKKCDK 34 (34)
T ss_dssp TT-HHHHHHHHSCC
T ss_pred cc-HHHHHHHHhCC
Confidence 45 68999998775
No 13
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=22.56 E-value=1.7e+02 Score=22.25 Aligned_cols=42 Identities=5% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHhcccCCCceEEEEeC-CceeEEEEccCCEEEEEECCcEEEEEeee
Q psy16997 57 IKDTMDKKYGPAWHVVVGE-TFGFEITYECKSLLYMFFGGNLAICMWKC 104 (105)
Q Consensus 57 IK~~~D~kyg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~~~LlfKt 104 (105)
...+++.-|...|++|--. ... +++.++-+.+ ++..++|||.
T Consensus 25 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~-~~~~vvv~R~ 67 (447)
T 2bmo_A 25 FQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKM-GVDEVIVSRQ 67 (447)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEE-TTEEEEEEEC
T ss_pred HHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEE-CCeeEEEEEC
Confidence 4667888889999997542 221 2456777788 7888888884
No 14
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=21.76 E-value=1.1e+02 Score=16.69 Aligned_cols=36 Identities=6% Similarity=0.199 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q psy16997 25 TDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMD 62 (105)
Q Consensus 25 ~dM~~~mq~~ai~~a~~a~~~~~~~~~~~A~~IK~~~D 62 (105)
.-.+++|+.+++..|.+ +.+.+-...--+-+|+-|+
T Consensus 16 llvdpdmkdeiikyaqe--kdfdnvsqagreilkkgle 51 (54)
T 3gxq_A 16 LLVDPDMKDEIIKYAQE--KDFDNVSQAGREILKKGLE 51 (54)
T ss_dssp EEECHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHH
T ss_pred EeeCCchhHHHHHHHHH--ccchhHHHHHHHHHHHHHH
Confidence 34578999999988876 4454322211234566554
No 15
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.19 E-value=93 Score=19.98 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhccC--------------HHHHHHHHHHHhcccCCCceEE
Q psy16997 29 DELMTEVVDLCSMACEKHAAN--------------LEQASRVIKDTMDKKYGPAWHV 71 (105)
Q Consensus 29 ~~mq~~ai~~a~~a~~~~~~~--------------~~~~A~~IK~~~D~kyg~~Whc 71 (105)
+.-...+++....++.++..+ -+....+|-.-.-..-+|.|||
T Consensus 7 ~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 7 QPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 334444555555555555532 2222233333322346789987
No 16
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=20.34 E-value=1.9e+02 Score=19.60 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q psy16997 36 VDLCSMACEKHAANLEQASRVIKDTMDKKYGP 67 (105)
Q Consensus 36 i~~a~~a~~~~~~~~~~~A~~IK~~~D~kyg~ 67 (105)
.+.+..-.++|+++.+ |-+.+|+.|.+++++
T Consensus 86 tRqVa~YrkKYp~n~e-Ie~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 86 IRQVAELRKKYPGDNT-IEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHHHSCSCHH-HHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHhCCCchH-HHHHHHHHHhhcccc
Confidence 4556677788998876 456677776666554
No 17
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.10 E-value=53 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=23.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcccC-CCceEEEEeC
Q psy16997 38 LCSMACEKHAANLEQASRVIKDTMDKKY-GPAWHVVVGE 75 (105)
Q Consensus 38 ~a~~a~~~~~~~~~~~A~~IK~~~D~ky-g~~WhcIVG~ 75 (105)
.|+.||..++.+-+ +.|..-|+..= .+.|.++.++
T Consensus 56 eAr~AL~~~ngDl~---~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCNGDVN---RAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHTSCHH---HHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcCCCHH---HHHHHHHhCCCcCCceeeeccc
Confidence 47888888876544 33566666552 5689998875
Done!