RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16997
(105 letters)
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide
binding, nucle structural protein-transport protein
complex; 1.85A {Saccharomyces cerevisiae}
Length = 97
Score = 100 bits (251), Expect = 2e-29
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 18 TYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETF 77
+ P+V +D+ D+L +++ + A +K+ + A +K +D KYG WHV+VG+ F
Sbjct: 12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGT-VKKQLDVKYGNTWHVIVGKNF 70
Query: 78 GFEITYECKSLLYMFFGGNLAICMWKCS 105
G +T+E +Y F+ G LA ++K +
Sbjct: 71 GSYVTHEKGHFVY-FYIGPLAFLVFKTA 97
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub
malaria, SGC, transport protein; 1.65A {Plasmodium
falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A
2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A
1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Length = 102
Score = 95.3 bits (237), Expect = 2e-27
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 10 EEEKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAW 69
+V +V DM +E+ + +D + A +K+ + A IK D+KY P W
Sbjct: 9 HHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIA-AHIKKEFDRKYDPTW 67
Query: 70 HVVVGETFGFEITYECKSLLYMFFGGNLAICMWKC 104
H VVG FG +T+E K+ +Y F+ G +AI ++K
Sbjct: 68 HCVVGRNFGSYVTHETKNFIY-FYIGQVAILLFKS 101
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 0.042
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 1 MADTEVVSREEEKKIVHTYPLVHKTDMADE---LMT-EVVDLCSMA 42
M+ +++ EK V T+ + +MA L+T EVV+LC +
Sbjct: 679 MSANNIIAEGIEKMGVRTF---SQKEMAFNLLGLLTPEVVELCQKS 721
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.19
Identities = 9/84 (10%), Positives = 19/84 (22%), Gaps = 22/84 (26%)
Query: 24 KTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDT-----------MDKKYGPA---- 68
+ + ++ + L + + +S + K Y
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 69 ---WHVVVGETFGFEITYECKSLL 89
+ F CK LL
Sbjct: 251 LNVQNAKAWNAFNL----SCKILL 270
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 27.5 bits (62), Expect = 0.80
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 47 AANLEQASRVIKDTM-DKKYGPAWHVVVGETF 77
A + E+A + +++ M +K +G A +V E
Sbjct: 183 AKSKEEACKAVQEIMQEKAFGAAGETIVIEEL 214
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2,
periplasmic substrate-binding silicibacter pomeroyi,
structural genomics; HET: MSE PG5; 1.79A {Silicibacter
pomeroyi}
Length = 258
Score = 25.8 bits (56), Expect = 2.8
Identities = 5/61 (8%), Positives = 15/61 (24%)
Query: 23 HKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHVVVGETFGFEIT 82
D+ + ++ NL +A++ ++ + G
Sbjct: 74 FAADLPPGTLEGYALPQGDGTARNRTNLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFL 133
Query: 83 Y 83
Sbjct: 134 L 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 4.7
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 28/85 (32%)
Query: 26 DMADELMTEVVDLCSMA----CEKHAAN----------------LEQASRVIKDTMDKKY 65
+ E + VV+ E N L+ + V+ +K
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVE--IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 66 GPAWHVVVGETFGFEITYECKSLLY 90
+ + E E + L+
Sbjct: 1878 -DIIELQK--SLSLE---EVEGHLF 1896
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 25.0 bits (54), Expect = 6.7
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 50 LEQASRVIKDTMDKKYGPAWHVVVGETFGFEITYECKSLLYMFFGGNL 97
+E+ + + KYG A V + + L Y+ L
Sbjct: 201 IEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILP--EL 246
>2cws_A Alginate lyase A1-II'; polysaccharide lyase family-7; HET: SO4;
1.00A {Sphingomonas SP} PDB: 2z42_A 2zac_A* 2zab_A*
2zaa_A* 2za9_A
Length = 237
Score = 24.6 bits (53), Expect = 6.8
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 57 IKDTMDKKYGPAWHVVVGETFGFEITYE 84
T + + +G+ + EI
Sbjct: 142 SDGTGSDVHNYFTGIKLGDLYNMEIRVT 169
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 86
Score = 23.8 bits (51), Expect = 9.4
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 76 TFGFEITYECKSLLYMFFGGN 96
T+ I Y C+ Y +
Sbjct: 29 TYKAVIQYSCEETFYTMKVND 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.414
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,597,185
Number of extensions: 81573
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 12
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)