RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16997
         (105 letters)



>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score = 90.2 bits (224), Expect = 7e-26
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 12  EKKIVHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHV 71
           ++K V     +   DM++E+  + VD  + A EK+    + A+  IK   DKKY P WH 
Sbjct: 1   DRKAV-----IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAY-IKKEFDKKYNPTWHC 54

Query: 72  VVGETFGFEITYECKSLLYMFFGGNLAICMWKC 104
           +VG  FG  +T+E +  +Y F+ G +AI ++K 
Sbjct: 55  IVGRNFGSYVTHETRHFIY-FYLGQVAILLFKS 86


>d2b78a1 b.122.1.9 (A:1-68) Hypothetical protein SMu776,
          N-terminal domain {Streptococcus mutans [TaxId: 1309]}
          Length = 68

 Score = 26.2 bits (58), Expect = 0.32
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 7  VSREEEKKIVHTYPLVHKTDMAD 29
          V    EKK+     L+   D  +
Sbjct: 6  VGSFAEKKLKRGVQLLSSRDYPN 28


>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
          thermophilus [TaxId: 274]}
          Length = 250

 Score = 24.1 bits (52), Expect = 4.1
 Identities = 6/43 (13%), Positives = 14/43 (32%)

Query: 29 DELMTEVVDLCSMACEKHAANLEQASRVIKDTMDKKYGPAWHV 71
          D  +  +V   ++AC  H  +  +    ++           H 
Sbjct: 21 DREIFPLVSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHP 63


>d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 23.6 bits (50), Expect = 6.0
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 16 VHTYPLVHKTDMADELMTEVVDLCSMACEKHAANLE 51
          VHT  LVH  D+  E   ++  + + A        +
Sbjct: 5  VHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETD 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,160
Number of extensions: 15437
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 9
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)