BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16998
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 6/59 (10%)
Query: 6 SVSYQTSKPPMKSSSADGGDNVE--YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
S+S Q +KP S+ D GD E YIKLKV+ DS+EIHF+VKMTT + KLK+SY++R
Sbjct: 2 SMSDQEAKP----STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQR 56
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 6/59 (10%)
Query: 6 SVSYQTSKPPMKSSSADGGDNVE--YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
S+S Q +KP S+ D GD E YIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 2 SMSDQEAKP----STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 56
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2
Enhances Daxx Sumo Binding Activity
Length = 99
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 6/59 (10%)
Query: 6 SVSYQTSKPPMKSSSADGGDNVE--YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
S+S Q +KP S+ D GD E YIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 2 SMSDQEAKP----STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 56
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Query: 1 MADNSSVSYQTSKPPMKSSSADGGDNVE--YIKLKVLSSDSNEIHFRVKMTTPMGKLKKS 58
+ S +S Q +KP S+ D GD E YIKLKV+ DS+EIHF+VKMTT + KLK+S
Sbjct: 14 LVPRSHMSDQEAKP----STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKES 69
Query: 59 YSER 62
Y +R
Sbjct: 70 YCQR 73
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 6/58 (10%)
Query: 7 VSYQTSKPPMKSSSADGGDNVE--YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+S Q +KP S+ D GD E YIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 MSDQEAKP----STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 54
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 6/58 (10%)
Query: 7 VSYQTSKPPMKSSSADGGDNVE--YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+S Q +KP S+ D GD E YIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 MSDQEAKP----STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 54
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
EYIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 35
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%)
Query: 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+EYIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 MEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 36
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
EYIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 5 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 39
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
EYIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 35
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
EYIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 3 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 37
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
EYIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 35
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
YIKLKV+ DS+EIHF+VKMTT + KLK+SY +R
Sbjct: 1 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR 34
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+N ++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 57
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
++I LKV D + + F++K TP+ KL K+YSER
Sbjct: 2 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYSER 36
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To
Sumo-3
Length = 93
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+N ++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 50
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like
Modifier Protein Isoform 2 (Sumo-2)
Length = 95
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+N ++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 50
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
N ++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 1 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 37
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+N ++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 2 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 39
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 24 GDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
G E+I LKVL D+ + F++K TP+ KL +Y +R
Sbjct: 7 GGETEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDR 45
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
Length = 94
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 40
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1- Sumo-2
Length = 81
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 38
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 2 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 36
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 2 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 36
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-2
Length = 91
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
++I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 38
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV D + + F++K TP+ KL K+Y ER
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER 34
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
Length = 227
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 53
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 29 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 61
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 57 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 89
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 31 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 63
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 23 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 55
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 23 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 55
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 9 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 41
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 11 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 43
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 32.0 bits (71), Expect = 0.088, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
+I LKV S S+EI F++K TTP+ +L +++++R
Sbjct: 30 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 62
>pdb|3TT1|H Chain H, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|I Chain I, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 219
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 20 SADGGDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSY 59
+AD Y++L L+S+ + ++F + T MG+ Y
Sbjct: 71 TADKSSRSAYMQLSSLTSEDSAVYFCARRTVTMGRYAMDY 110
>pdb|2OJZ|H Chain H, Anti-Dna Antibody Ed10
pdb|2OJZ|I Chain I, Anti-Dna Antibody Ed10
pdb|2OK0|H Chain H, Fab Ed10-Dna Complex
Length = 216
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 20 SADGGDNVEYIKLKVLSSDSNEIHFRVKMT 49
+AD ++ Y+ L L+SD N ++F + T
Sbjct: 69 TADTSSSIVYMHLSSLTSDDNAVYFCTRWT 98
>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 41 EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTG 77
+ HF V M G+ + ER +P K +P+G G
Sbjct: 204 QAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVG 240
>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 41 EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTG 77
+ HF V M G+ + ER +P K +P+G G
Sbjct: 204 QAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVG 240
>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 41 EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTG 77
+ HF V M G+ + ER +P K +P+G G
Sbjct: 204 QAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVG 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,082,904
Number of Sequences: 62578
Number of extensions: 112755
Number of successful extensions: 265
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 48
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)