Query psy16998
Match_columns 98
No_of_seqs 102 out of 269
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:08:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyd_D Small ubiquitin-related 100.0 1.5E-30 5E-35 180.4 7.5 89 6-97 19-107 (115)
2 2l76_A Nfatc2-interacting prot 100.0 5.3E-30 1.8E-34 173.0 8.3 71 25-97 17-87 (95)
3 2jxx_A Nfatc2-interacting prot 99.9 8.5E-28 2.9E-32 161.9 6.3 72 25-97 21-93 (97)
4 1wz0_A Ubiquitin-like protein 99.9 6.9E-26 2.3E-30 153.5 9.3 77 20-97 14-91 (104)
5 1wm3_A Ubiquitin-like protein 99.9 4.3E-26 1.5E-30 143.8 6.8 68 29-97 1-68 (72)
6 2d07_B Ubiquitin-like protein 99.9 5.2E-26 1.8E-30 150.5 7.1 71 26-97 14-84 (93)
7 2eke_C Ubiquitin-like protein 99.9 2.6E-25 8.9E-30 151.6 9.2 74 22-97 24-97 (106)
8 3a4r_A Nfatc2-interacting prot 99.9 1.3E-25 4.4E-30 144.4 6.7 71 26-97 4-75 (79)
9 2io0_B Small ubiquitin-related 99.9 1.5E-25 5.2E-30 148.4 7.0 70 27-97 3-72 (91)
10 3tix_A Ubiquitin-like protein 99.9 2.2E-25 7.6E-30 167.2 6.2 70 26-97 54-123 (207)
11 3pge_A SUMO-modified prolifera 99.9 3.8E-25 1.3E-29 165.0 7.3 71 25-97 25-95 (200)
12 3v7o_A Minor nucleoprotein VP3 99.9 2.3E-26 7.8E-31 174.5 0.0 71 26-98 18-88 (227)
13 2k8h_A Small ubiquitin protein 99.9 7.7E-25 2.6E-29 149.9 7.0 72 25-97 22-93 (110)
14 2io1_B Small ubiquitin-related 99.9 1.7E-24 5.9E-29 143.7 7.3 72 25-97 3-74 (94)
15 3uf8_A Ubiquitin-like protein 99.9 7.5E-24 2.6E-28 156.8 6.8 70 26-97 18-87 (209)
16 3ix6_A TS, tsase, thymidylate 99.9 2.6E-23 8.8E-28 166.3 0.0 71 26-98 18-88 (360)
17 4da1_A Protein phosphatase 1K, 99.8 4.7E-23 1.6E-27 162.1 0.0 71 26-98 27-97 (389)
18 3goe_A DNA repair protein RAD6 99.8 7.5E-20 2.6E-24 120.3 7.1 69 28-96 8-76 (82)
19 1wyw_B Ubiquitin-like protein 99.5 2.2E-14 7.6E-19 94.0 6.8 72 25-97 17-88 (97)
20 2uyz_B Small ubiquitin-related 99.4 2.2E-13 7.6E-18 84.8 6.4 69 28-97 2-70 (79)
21 3dbh_I NEDD8; cell cycle, acti 98.6 3.8E-07 1.3E-11 56.9 8.1 71 26-97 9-79 (88)
22 3n3k_B Ubiquitin; hydrolase, p 98.5 1.9E-07 6.5E-12 57.8 6.1 69 28-97 2-70 (85)
23 3mtn_B UBA80, ubcep1, ubiquiti 98.5 4.7E-07 1.6E-11 55.8 7.3 68 28-96 2-69 (85)
24 3v6c_B Ubiquitin; structural g 98.5 1E-06 3.5E-11 56.0 8.3 71 26-97 14-84 (91)
25 3phx_B Ubiquitin-like protein 98.5 8.7E-07 3E-11 54.6 7.5 69 28-97 3-71 (79)
26 3vdz_A Ubiquitin-40S ribosomal 98.4 1.2E-06 4E-11 58.4 8.3 70 26-96 32-101 (111)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 98.4 4.1E-07 1.4E-11 56.9 5.8 69 27-96 5-73 (87)
28 1ndd_A NEDD8, protein (ubiquit 98.4 9.3E-07 3.2E-11 53.2 6.9 66 30-96 1-66 (76)
29 1j8c_A Ubiquitin-like protein 98.4 4.6E-06 1.6E-10 56.9 10.9 69 26-96 29-97 (125)
30 4hcn_B Polyubiquitin, ubiquiti 98.4 6.6E-07 2.3E-11 57.9 6.2 71 25-96 18-88 (98)
31 4dwf_A HLA-B-associated transc 98.4 1.2E-06 4.1E-11 55.3 7.3 68 27-96 3-70 (90)
32 3a9j_A Ubiquitin; protein comp 98.4 1.3E-06 4.4E-11 52.5 7.0 65 31-96 2-66 (76)
33 3k9o_B Ubiquitin, UBB+1; E2-25 98.4 1.3E-06 4.5E-11 55.5 6.8 67 30-97 2-68 (96)
34 2dzi_A Ubiquitin-like protein 98.4 2.7E-06 9.2E-11 52.0 7.9 70 27-97 5-74 (81)
35 1wx8_A Riken cDNA 4931431F19; 98.3 2.4E-06 8.3E-11 54.6 7.5 68 27-96 15-82 (96)
36 2ojr_A Ubiquitin; lanthide-bin 98.3 4E-06 1.4E-10 55.5 7.8 69 28-97 34-102 (111)
37 2hj8_A Interferon-induced 17 k 98.3 2.3E-06 7.9E-11 54.2 6.2 69 28-97 3-71 (88)
38 1ttn_A DC-UBP, dendritic cell- 98.3 1.4E-06 4.9E-11 57.3 5.4 71 26-97 20-90 (106)
39 2bwf_A Ubiquitin-like protein 98.3 4.1E-06 1.4E-10 50.8 7.0 65 30-96 5-69 (77)
40 1yx5_B Ubiquitin; proteasome, 98.3 3.3E-06 1.1E-10 54.3 6.9 65 31-96 2-66 (98)
41 2faz_A Ubiquitin-like containi 98.2 9.4E-06 3.2E-10 49.6 7.1 67 29-96 2-70 (78)
42 4eew_A Large proline-rich prot 98.1 9.5E-06 3.3E-10 50.8 7.2 69 26-96 14-82 (88)
43 1sif_A Ubiquitin; hydrophobic 98.1 7.3E-06 2.5E-10 52.0 6.6 67 29-96 9-75 (88)
44 1wx7_A Ubiquilin 3; ubiquitin- 98.1 1.7E-05 5.7E-10 51.9 7.8 69 26-96 14-82 (106)
45 3b08_A Polyubiquitin-C, ubiqui 98.1 1.8E-05 6.1E-10 53.2 7.6 68 28-96 75-142 (152)
46 4fbj_B NEDD8; effector-HOST ta 98.0 1.3E-05 4.4E-10 50.8 6.4 67 30-97 1-67 (88)
47 2l7r_A Ubiquitin-like protein 98.0 7.7E-06 2.6E-10 52.6 5.1 67 27-96 17-83 (93)
48 2klc_A Ubiquilin-1; ubiquitin- 98.0 3.3E-05 1.1E-09 50.4 7.8 69 26-96 22-90 (101)
49 3plu_A Ubiquitin-like modifier 98.0 2.4E-05 8.1E-10 52.0 7.1 72 25-97 17-88 (93)
50 1wy8_A NP95-like ring finger p 98.0 2.5E-05 8.6E-10 48.8 6.7 69 27-96 5-75 (89)
51 2wyq_A HHR23A, UV excision rep 98.0 4.9E-05 1.7E-09 46.9 7.8 68 28-96 4-74 (85)
52 3u30_A Ubiquitin, linear DI-ub 98.0 2.4E-05 8.3E-10 54.7 7.1 70 26-96 17-86 (172)
53 1yqb_A Ubiquilin 3; structural 97.9 3E-05 1E-09 50.6 6.5 70 25-96 18-87 (100)
54 3rt3_B Ubiquitin-like protein 97.8 7.3E-05 2.5E-09 51.3 7.6 70 27-97 79-148 (159)
55 3b1l_X E3 ubiquitin-protein li 97.0 2.4E-06 8.2E-11 51.9 0.0 66 31-97 2-67 (76)
56 1uel_A HHR23B, UV excision rep 97.8 6.4E-05 2.2E-09 48.2 6.8 66 30-96 1-69 (95)
57 3m62_B UV excision repair prot 97.8 3.1E-05 1.1E-09 50.9 5.3 66 30-96 2-67 (106)
58 1wia_A Hypothetical ubiquitin- 97.8 3.6E-05 1.2E-09 49.1 5.4 66 27-96 5-71 (95)
59 3b08_A Polyubiquitin-C, ubiqui 97.8 8.9E-05 3E-09 49.7 6.9 65 31-96 2-66 (152)
60 3m63_B Ubiquitin domain-contai 97.7 2.2E-05 7.5E-10 51.4 2.9 69 26-96 25-93 (101)
61 2daf_A FLJ35834 protein; hypot 97.7 0.00026 8.8E-09 48.9 8.3 69 27-96 13-82 (118)
62 2kdi_A Ubiquitin, vacuolar pro 97.6 0.0002 6.8E-09 47.7 6.9 67 29-96 9-75 (114)
63 3l0w_B Monoubiquitinated proli 97.6 0.00021 7.1E-09 50.8 6.8 66 30-96 1-66 (169)
64 2kk8_A Uncharacterized protein 97.5 0.00031 1.1E-08 44.4 6.5 68 28-96 9-77 (84)
65 3q3f_A Ribonuclease/ubiquitin 97.5 0.00026 8.8E-09 51.8 7.0 68 29-97 105-172 (189)
66 1uh6_A Ubiquitin-like 5; beta- 97.5 0.00046 1.6E-08 46.0 7.1 69 28-97 27-95 (100)
67 1v86_A DNA segment, CHR 7, way 97.5 0.00035 1.2E-08 45.0 6.2 65 27-94 15-79 (95)
68 3u5e_m 60S ribosomal protein L 97.4 2E-05 6.8E-10 53.4 0.0 67 30-97 1-67 (128)
69 4a20_A Ubiquitin-like protein 97.4 0.00045 1.5E-08 45.4 6.4 74 22-96 12-89 (98)
70 1we6_A Splicing factor, putati 97.4 0.00062 2.1E-08 44.7 6.8 69 27-96 25-97 (111)
71 2kan_A Uncharacterized protein 97.3 0.00066 2.2E-08 43.7 6.1 68 27-96 13-81 (94)
72 1we7_A SF3A1 protein; structur 97.3 0.00055 1.9E-08 45.3 5.8 68 28-96 24-101 (115)
73 3u5c_f 40S ribosomal protein S 97.2 5.4E-05 1.8E-09 53.5 0.0 67 30-97 1-67 (152)
74 1x1m_A Ubiquitin-like protein 97.1 0.0013 4.6E-08 42.9 6.0 68 28-96 11-93 (107)
75 3u30_A Ubiquitin, linear DI-ub 97.0 0.0024 8.1E-08 44.4 6.9 68 29-97 96-163 (172)
76 1wgd_A Homocysteine-responsive 96.9 0.0017 6E-08 41.0 5.4 67 28-95 6-78 (93)
77 3rt3_B Ubiquitin-like protein 96.9 0.0037 1.3E-07 42.6 7.0 66 30-96 3-70 (159)
78 2al3_A TUG long isoform; TUG U 96.8 0.0015 5E-08 43.2 4.0 54 30-84 10-63 (90)
79 2kd0_A LRR repeats and ubiquit 96.7 0.004 1.4E-07 39.1 5.7 59 37-96 19-77 (85)
80 1wgg_A Ubiquitin carboxyl-term 96.7 0.0068 2.3E-07 39.0 6.6 66 28-96 6-72 (96)
81 2lxa_A Ubiquitin-like protein 96.6 0.0024 8.1E-08 41.0 4.1 61 30-91 2-65 (87)
82 1v5o_A 1700011N24RIK protein; 96.5 0.0059 2E-07 39.4 5.8 67 29-96 7-78 (102)
83 3ai5_A Yeast enhanced green fl 96.4 0.011 3.8E-07 46.0 7.5 69 27-96 231-299 (307)
84 1wxv_A BAG-family molecular ch 96.4 0.01 3.5E-07 37.2 6.0 64 28-93 6-75 (92)
85 2kdb_A Homocysteine-responsive 96.4 0.0052 1.8E-07 40.3 4.7 65 25-89 19-86 (99)
86 1wju_A NEDD8 ultimate buster-1 96.3 0.005 1.7E-07 40.9 4.2 66 29-95 17-84 (100)
87 1v2y_A 3300001G02RIK protein; 96.1 0.0062 2.1E-07 40.6 4.2 70 27-96 5-89 (105)
88 2kzr_A Ubiquitin thioesterase 96.1 0.0063 2.1E-07 38.1 4.0 65 30-96 1-71 (86)
89 1v5t_A 8430435I17RIK protein; 96.1 0.005 1.7E-07 38.9 3.5 66 28-95 6-75 (90)
90 2gow_A HCG-1 protein, ubiquiti 96.1 0.018 6.2E-07 39.4 6.4 68 26-94 14-89 (125)
91 1wgh_A Ubiquitin-like 3, HCG-1 96.0 0.077 2.6E-06 35.8 9.3 65 26-91 13-85 (116)
92 1wf9_A NPL4 family protein; be 96.0 0.019 6.5E-07 37.5 5.9 67 28-96 6-88 (107)
93 1oqy_A HHR23A, UV excision rep 95.8 0.013 4.6E-07 46.4 5.3 68 28-96 6-76 (368)
94 2kjr_A CG11242; UBL, ubiquitin 95.3 0.069 2.4E-06 34.5 6.7 69 27-96 13-89 (95)
95 4dbg_A Ranbp-type and C3HC4-ty 95.3 0.08 2.7E-06 35.3 7.1 69 27-96 22-93 (105)
96 1se9_A Ubiquitin family; ubiqu 95.1 0.1 3.5E-06 35.9 7.3 67 28-94 15-88 (126)
97 2fnj_B Transcription elongatio 94.8 0.11 3.6E-06 35.4 6.7 59 30-90 3-61 (118)
98 1v6e_A Cytoskeleton-associated 94.6 0.11 3.9E-06 32.8 6.1 67 29-96 7-81 (95)
99 2dzj_A Synaptic glycoprotein S 94.5 0.047 1.6E-06 34.6 4.2 68 28-96 9-82 (88)
100 2kj6_A Tubulin folding cofacto 93.7 0.18 6.2E-06 32.7 5.8 70 26-96 11-89 (97)
101 1t0y_A Tubulin folding cofacto 93.5 0.28 9.5E-06 32.6 6.6 67 28-95 5-79 (122)
102 4ajy_B Transcription elongatio 92.6 0.28 9.4E-06 33.5 5.5 52 38-90 10-61 (118)
103 2xzm_9 RPS31E; ribosome, trans 92.3 0.024 8.4E-07 41.5 0.0 56 31-87 2-57 (189)
104 1wjn_A Tubulin-folding protein 91.5 0.73 2.5E-05 29.0 6.3 70 26-96 6-86 (97)
105 3shq_A UBLCP1; phosphatase, hy 90.9 0.5 1.7E-05 36.5 6.0 67 27-95 3-72 (320)
106 2cr5_A Reproduction 8; UBX dom 89.8 2.9 9.8E-05 27.2 9.3 73 20-94 14-90 (109)
107 1wj4_A KIAA0794 protein; UBX d 88.8 3.8 0.00013 27.4 10.6 72 23-96 37-113 (124)
108 3qx1_A FAS-associated factor 1 88.2 2.4 8.2E-05 26.0 6.7 67 28-96 6-77 (84)
109 3qij_A Protein 4.1; cytoskelet 87.1 1.6 5.6E-05 32.5 6.3 51 25-75 13-63 (296)
110 2kvr_A Ubiquitin carboxyl-term 86.9 1.2 4E-05 30.4 5.0 46 41-87 57-102 (130)
111 2bps_A YUKD protein; ubiquitin 86.7 2.3 7.8E-05 27.0 6.0 72 27-98 2-79 (81)
112 1h4r_A Merlin; FERM, neurofibr 85.3 2.8 9.7E-05 31.0 6.8 48 27-75 20-67 (314)
113 1ef1_A Moesin; membrane, FERM 84.8 2.5 8.7E-05 30.9 6.3 46 29-75 1-46 (294)
114 3ivf_A Talin-1; FERM domain, c 84.5 2.6 9E-05 32.1 6.5 50 26-75 82-131 (371)
115 2pjh_A Protein NPL4, nuclear p 83.1 1.1 3.8E-05 27.7 3.2 67 28-96 3-74 (80)
116 4efo_A Serine/threonine-protei 81.5 8.2 0.00028 25.1 7.1 53 30-83 13-66 (94)
117 4b6w_A Tubulin-specific chaper 81.3 4.7 0.00016 25.1 5.7 66 30-96 3-77 (86)
118 2ylm_A Ubiquitin carboxyl-term 80.4 2 6.8E-05 35.2 4.6 37 42-79 38-74 (530)
119 2i1j_A Moesin; FERM, coiled-co 79.3 5.3 0.00018 33.0 6.8 48 27-75 2-49 (575)
120 1oey_A P67-PHOX, neutrophil cy 78.3 8.5 0.00029 24.5 6.2 46 28-76 4-49 (83)
121 2daj_A KIAA0977 protein, COBL- 76.9 13 0.00044 24.3 6.8 50 28-78 9-58 (91)
122 1j0g_A Hypothetical protein 18 75.0 11 0.00036 24.7 6.0 62 27-88 8-72 (92)
123 2dzm_A FAS-associated factor 1 73.9 7 0.00024 25.2 5.0 60 29-90 9-69 (100)
124 2dzk_A UBX domain-containing p 70.7 18 0.00063 23.3 8.0 66 28-94 12-82 (109)
125 3pvl_A Myosin VIIA isoform 1; 67.6 17 0.00059 30.4 7.2 49 27-75 261-309 (655)
126 1vd2_A Protein kinase C, IOTA 64.0 26 0.00087 22.4 7.9 48 27-75 4-51 (89)
127 2kc2_A Talin-1, F1; FERM, adhe 61.1 36 0.0012 23.1 7.5 40 28-67 10-49 (128)
128 3jyu_A Ubiquitin carboxyl-term 60.1 16 0.00055 26.5 5.1 64 29-92 139-210 (231)
129 3au4_A Myosin-X; protein-prote 59.8 34 0.0012 27.4 7.4 50 27-76 214-264 (555)
130 2l32_A Small archaeal modifier 57.6 22 0.00074 21.5 4.7 49 29-84 2-50 (74)
131 1wgy_A RAP guanine nucleotide 54.0 26 0.00087 23.2 4.8 56 27-83 7-65 (104)
132 2dhz_A RAP guanine nucleotide 53.0 27 0.00093 23.7 5.0 56 27-82 7-70 (120)
133 3u7z_A Putative metal binding 51.9 13 0.00045 24.3 3.1 35 26-62 5-39 (101)
134 4a3p_A Ubiquitin carboxyl-term 50.3 29 0.00099 24.8 5.1 36 40-75 140-175 (217)
135 4hti_A Receptor-type tyrosine- 48.2 16 0.00053 24.2 3.0 22 27-51 42-63 (99)
136 1yel_A AT1G16640; CESG, protei 47.4 37 0.0013 21.2 4.7 49 31-79 41-92 (104)
137 2gw6_A TRNA-splicing endonucle 43.2 27 0.00091 23.4 3.7 21 26-46 101-121 (123)
138 1q1o_A Cell division control p 40.1 65 0.0022 21.0 5.1 39 28-66 4-49 (98)
139 2qt7_A Receptor-type tyrosine- 38.3 28 0.00095 22.6 3.0 22 27-51 35-56 (91)
140 2ylm_A Ubiquitin carboxyl-term 36.6 78 0.0027 25.7 6.1 45 29-74 239-286 (530)
141 1m1s_A WR4; structural genomic 36.5 33 0.0011 22.8 3.2 26 26-51 23-48 (116)
142 1z6m_A Conserved hypothetical 33.9 17 0.00057 23.8 1.4 32 57-90 139-170 (175)
143 1z9l_A Vesicle-associated memb 33.2 29 0.00099 22.6 2.5 24 29-52 30-53 (128)
144 1s3s_G P47 protein; AAA ATPase 32.8 71 0.0024 21.0 4.5 66 27-93 50-119 (127)
145 1wid_A DNA-binding protein RAV 31.6 1E+02 0.0034 20.2 5.1 51 27-77 49-104 (130)
146 1v0a_A Endoglucanase H; carboh 31.5 32 0.0011 24.6 2.7 23 26-48 67-91 (178)
147 2cri_A Vesicle-associated memb 31.2 32 0.0011 23.1 2.5 24 29-52 34-57 (147)
148 1ryj_A Unknown; beta/alpha pro 30.9 81 0.0028 18.3 5.2 50 29-84 4-53 (70)
149 1msp_A MSP, major sperm protei 30.8 32 0.0011 22.6 2.4 24 28-51 27-50 (126)
150 1row_A SSP-19, MSP-domain prot 30.6 33 0.0011 22.3 2.4 24 28-51 17-40 (109)
151 3bci_A Disulfide bond protein 29.7 21 0.00072 23.6 1.4 31 58-90 140-170 (186)
152 1wic_A Hypothetical protein ri 29.5 36 0.0012 23.2 2.6 24 29-52 38-61 (152)
153 1m11_3 Coat protein VP3; decay 29.2 68 0.0023 23.5 4.2 48 30-80 70-125 (238)
154 2al6_A Focal adhesion kinase 1 28.4 1E+02 0.0035 23.4 5.3 44 32-75 10-57 (375)
155 3gv1_A Disulfide interchange p 27.8 26 0.00088 23.4 1.6 32 57-90 99-131 (147)
156 2aya_A DNA polymerase III subu 25.7 85 0.0029 20.5 3.9 50 36-89 49-105 (128)
157 3hwu_A Putative DNA-binding pr 25.3 1.3E+02 0.0044 20.0 4.8 29 39-67 12-40 (147)
158 4gdk_A Ubiquitin-like protein 24.7 1.3E+02 0.0046 18.8 5.6 61 28-89 4-70 (91)
159 3rpf_C Molybdopterin convertin 24.5 1.1E+02 0.0038 17.7 5.0 54 30-86 3-58 (74)
160 1wfy_A Regulator of G-protein 22.9 1.5E+02 0.0052 19.5 4.6 51 27-78 14-65 (104)
161 3gha_A Disulfide bond formatio 22.6 35 0.0012 23.5 1.5 31 58-90 154-184 (202)
162 2l66_A SSO7C4, transcriptional 22.6 90 0.0031 17.3 3.1 25 57-81 18-42 (53)
163 2k9i_A Plasmid PRN1, complete 22.2 61 0.0021 17.4 2.2 27 41-67 9-35 (55)
164 1t3b_A Thiol:disulfide interch 22.1 39 0.0013 23.3 1.7 31 58-90 172-203 (211)
165 3osv_A Flagellar basal-BODY RO 21.7 1.8E+02 0.006 19.0 5.5 44 27-87 36-80 (138)
166 3lxf_A Ferredoxin; iron, iron- 21.1 1.5E+02 0.0052 18.3 4.3 32 31-66 2-33 (104)
167 3gyk_A 27KDA outer membrane pr 21.0 37 0.0013 21.9 1.3 30 59-90 136-165 (175)
168 3gmf_A Protein-disulfide isome 20.3 41 0.0014 23.5 1.5 28 61-90 162-189 (205)
No 1
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=1.5e-30 Score=180.36 Aligned_cols=89 Identities=34% Similarity=0.406 Sum_probs=67.4
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCC
Q psy16998 6 SVSYQTSKPPMKSSSADGGDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHG 85 (98)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~T 85 (98)
-|+.++++|+. ..++++.++++|+|||++|+|.+|+|+||++|+|+|||++||+|.|+++ .++||+|||+||++++|
T Consensus 19 ~~~~~~~~~~~--~~~~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~-~~irFlFDG~rI~~~~T 95 (115)
T 3kyd_D 19 HMSDQEAKPST--EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-NSLRFLFEGQRIADNHT 95 (115)
T ss_dssp ----------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCT-TSEEEEETTEECCTTCC
T ss_pred ccccccccCcc--ccccCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCCh-hhEEEEECCeECCCCCC
Confidence 47889999862 2345666789999999999999999999999999999999999999998 69999999999999999
Q ss_pred cCceeeccCCcC
Q psy16998 86 GNSFYCVNSGTS 97 (98)
Q Consensus 86 P~~L~~~~~~~~ 97 (98)
|++|+|-|+|+.
T Consensus 96 P~dL~MEDgD~I 107 (115)
T 3kyd_D 96 PKELGMEEEDVI 107 (115)
T ss_dssp TTTTTCCTTCEE
T ss_pred HHHcCCCCCCEE
Confidence 999999999975
No 2
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=5.3e-30 Score=173.03 Aligned_cols=71 Identities=8% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+.+.+|||||+ ++|++++||||++|+|+|||+|||+|.|+++ +++||+|||+||++++||++|+|-|+|+.
T Consensus 17 ~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~-~sirFlfDG~rI~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 17 ETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSP-SRILLLFGETELSPTATPRTLKLGVADII 87 (95)
T ss_dssp SCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCG-GGEEEEETTEECCTTSCHHHHTCCSSCEE
T ss_pred CCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCCh-hhEEEEECCcCCCCCCCHhHcCCCCCCEE
Confidence 45789999999 5899999999999999999999999999999 79999999999999999999999999974
No 3
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.94 E-value=8.5e-28 Score=161.91 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=68.2
Q ss_pred CCCcceEEEEeccCCC-EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSN-EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~-ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+++++|+|||++|+|+ +|+|+||++|+|+|||++||+++|+++ +++||+|||+||.+++||++|+|-|+|+.
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~-~~vrF~FDG~rI~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG-RKLSFFFDGTKLSGRELPADLGMESGDLI 93 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS-SCCEEEETTEECCSCSCHHHHTCCTTEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc-ccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 4678999999999995 899999999999999999999999998 69999999999999999999999999874
No 4
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.93 E-value=6.9e-26 Score=153.47 Aligned_cols=77 Identities=26% Similarity=0.301 Sum_probs=70.7
Q ss_pred CCCCCC-CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 20 SADGGD-NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 20 ~~~~~~-~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
.+.++. ++++|+|+|++++|++|+|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 14 ~~~~~~~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~-~~~rf~FdG~~l~~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 14 KEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLEMEDEDTI 91 (104)
T ss_dssp CCCCCCSCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT-TTSCEESSSSBCCTTSCTTTTTCCTTEEE
T ss_pred cccCCCCCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 444443 568999999999999999999999999999999999999998 69999999999999999999999999875
No 5
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.93 E-value=4.3e-26 Score=143.82 Aligned_cols=68 Identities=28% Similarity=0.340 Sum_probs=65.8
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
||+|+|++++|++++|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLEMEDEDTI 68 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT-TTCEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 699999999999999999999999999999999999998 69999999999999999999999999874
No 6
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.93 E-value=5.2e-26 Score=150.48 Aligned_cols=71 Identities=28% Similarity=0.345 Sum_probs=67.6
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++.+|+|+|++++|++|+|+|+++|+|+|||++||++.|+++ .++||+|||.||.+++||++|+|-|+++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLEMEDEDTI 84 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc-cceEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 568999999999999999999999999999999999999998 69999999999999999999999999874
No 7
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.92 E-value=2.6e-25 Score=151.57 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=69.4
Q ss_pred CCCCCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 22 DGGDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 22 ~~~~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++.+++++|+|||++ +|.+++|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 24 ~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~-~~~rF~FdG~rl~~~~Tp~dl~medgD~I 97 (106)
T 2eke_C 24 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLDMEDNDII 97 (106)
T ss_dssp CCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc-ccEEEEECCeEcCCCCCHHHcCCCCCCEE
Confidence 344577899999999 999999999999999999999999999998 69999999999999999999999999875
No 8
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.92 E-value=1.3e-25 Score=144.39 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=67.8
Q ss_pred CCcceEEEEeccCCC-EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSN-EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~-ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++++|+|+|++++|+ +++|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG-HKLSFFFDGTKLSGKELPADLGLESGDLI 75 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT-CCCEEEETTEECCSCCCHHHHTCCTTCEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 568999999999996 899999999999999999999999998 59999999999999999999999999975
No 9
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.92 E-value=1.5e-25 Score=148.39 Aligned_cols=70 Identities=27% Similarity=0.332 Sum_probs=66.9
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+++|+|+|++++|++|+|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~-~~~rf~FdG~~l~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLEMEDEDTI 72 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS-TTEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 57999999999999999999999999999999999999998 69999999999999999999999999874
No 10
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-25 Score=167.17 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++++|+|||. ++|++|+||||++|+|+|||++||+|+|+++ .++||+|||+||++++||++|+|-|+|+.
T Consensus 54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~-~sIRFLFDGqRI~~ddTPeDLdMEDGDtI 123 (207)
T 3tix_A 54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLTFLYDGIEIQADQTPEDLDMEDNDII 123 (207)
T ss_dssp -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG-GGSCEEETTEECCSSCCTTTTTCCTTEEE
T ss_pred CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc-ccEEEEECCeecCCCCCHHHcCCCCCCEE
Confidence 4789999997 6999999999999999999999999999998 79999999999999999999999999975
No 11
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-25 Score=165.02 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=67.3
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+++++|+|||+ ++|.+|+|+||++|+|+|||++||+|+|+++ .++||+|||+||++++||++|+|-|+|+.
T Consensus 25 ~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~-~~~RF~FdG~rI~~~~TP~dL~MEdgD~I 95 (200)
T 3pge_A 25 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLDMEDNDII 95 (200)
T ss_dssp CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG-GGEEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh-hhEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 45799999997 5999999999999999999999999999998 79999999999999999999999999975
No 12
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.91 E-value=2.3e-26 Score=174.45 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcCC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTSE 98 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~~ 98 (98)
++++|+||| +++|++|+||||++|+|+|||++||+|.|+++ +++||+|||+||++++||++|+|-|+|+.+
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~-~siRFLFDGqRI~dddTPadL~MEDGDtID 88 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLDMEDNDIIE 88 (227)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCc-cceEEEECCEecCCCCCHHHcCCCCCCEEE
Confidence 578999999 99999999999999999999999999999998 699999999999999999999999999853
No 13
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.91 E-value=7.7e-25 Score=149.95 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=68.7
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+++.+|+|+|++++|.+|+|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~-~~~rfiFdG~~L~~~~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR-NSVRFLFDGTPIDETKTPEELGMEDDDVI 93 (110)
T ss_dssp CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS-SSCEEESSSCBCCSSSHHHHHHCSSEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 4678999999999999999999999999999999999999998 59999999999999999999999999874
No 14
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.91 E-value=1.7e-24 Score=143.73 Aligned_cols=72 Identities=26% Similarity=0.315 Sum_probs=67.1
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
.++++|+|+|++++|++|+|+|+++|+|+|||++||++.|+++ .++||+|||+||.+++||++|+|-|+++.
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~FdG~~l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQLEMEDEDTI 74 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTTTCCTTCEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHcCCCCCCEE
Confidence 3568999999999999999999999999999999999999998 69999999999999999999999999975
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.89 E-value=7.5e-24 Score=156.82 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++++|+|||++ +|++|+||||++|+|+|||++||+|+|+++ .++||+|||++|.+++||++|+|-|+|+.
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~-~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I 87 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLDMEDNDII 87 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGCEEEETTEECCTTCCTTTTTCCTTEEE
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCCh-heEEEEECCEeccCCCChHHhhhcccccc
Confidence 67999999998 889999999999999999999999999998 79999999999999999999999999874
No 16
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.86 E-value=2.6e-23 Score=166.29 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcCC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTSE 98 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~~ 98 (98)
++++|+|||++ +|++|+||||++|+|+|||++||+|.|+++ .++||+|||+||++++||++|+|-|+|+.+
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~-~~~rFlFdG~rI~~~~TP~~L~MEDgD~Id 88 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDLDMEDNDIIE 88 (360)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCc-ceEEEEECCeECCCCCChHHcCCCccchhh
Confidence 56899999998 689999999999999999999999999998 699999999999999999999999999753
No 17
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.85 E-value=4.7e-23 Score=162.14 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcCC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTSE 98 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~~ 98 (98)
++++|+|||++ +|.+++||||++|+|+|||++||+|+|+++ .++||+|||+||.+++||++|+|-|+|+.+
T Consensus 27 ~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~-~~~~f~f~G~~i~~~~Tp~~l~med~d~i~ 97 (389)
T 4da1_A 27 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQAPEDLDMEDNDIIE 97 (389)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHcCCCCCCEee
Confidence 55899999998 889999999999999999999999999998 699999999999999999999999999753
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.80 E-value=7.5e-20 Score=120.31 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=65.0
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
.-|+|-.++.-...++|+|+++|++.|||+|||.++|++++.++||+|||.||++++||++|||-|+|-
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCce
Confidence 468899999888899999999999999999999999999966999999999999999999999999974
No 19
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.52 E-value=2.2e-14 Score=93.97 Aligned_cols=72 Identities=36% Similarity=0.438 Sum_probs=66.8
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+++..|+|+|+..+|..+.|+|.+++.+..|+..||++.|+++ ...||+|+|+++..+.|+.++.+-+++|.
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~-~~qrLif~Gk~L~d~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-NSLRFLFEGQRIADNHTPKELGMEEEDVI 88 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCHHHHTCCTTCEE
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh-hhEEEEECCeEcCCCCCHHHCCCCCCCEE
Confidence 4668999999999999999999999999999999999999998 69999999999999999999999998874
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.44 E-value=2.2e-13 Score=84.80 Aligned_cols=69 Identities=38% Similarity=0.466 Sum_probs=65.4
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++|+|+|++.+|..+.|+|.+++++.+|+++||++.|+++ ...||.|+|.++.++.|++++++-|++|.
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~-~~qrL~~~G~~L~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-NSLRFLFEGQRIADNHTPKELGMEEEDVI 70 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCHHHHTCCTTEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc-ccEEEEECCEEeCCCCCHHHcCCCCCCEE
Confidence 4799999999999999999999999999999999999998 69999999999999999999999998774
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.57 E-value=3.8e-07 Score=56.86 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=64.9
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
....++|.|+..+|..+.+.|.+++....|+...+++.|+++ ...|++|+|..+..+.|..++..-++.|.
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrL~~~G~~L~d~~tL~~~~i~~~~~i 79 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIYSGKQMNDEKTAADYKILGGSVL 79 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCCEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH-HHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 346799999999999999999999999999999999999998 68999999999999999999988887763
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.54 E-value=1.9e-07 Score=57.80 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=62.1
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
..++|.|+..+|..+.+.|.+++....|...++++.|+++ ...|++|+|..+..+.|..++..-+++|.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~-~~qrL~~~g~~L~d~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIHNHSAL 70 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETBEECCTTCBTTTTTCCTTCEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEECCeECCCCCCHHHCCCCCCCEE
Confidence 3688999999999999999999999999999999999998 68999999999999999999988777663
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.51 E-value=4.7e-07 Score=55.84 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=62.1
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..++|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|+|..+..+.|..++..-++.|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~qrL~~~g~~L~d~~tL~~~~i~~~~~ 69 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKWST 69 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-HHEEEEECCEECCCCCCHHHcCCCCCCE
Confidence 4689999999999999999999999999999999999998 6899999999999999999988777765
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.47 E-value=1e-06 Score=56.01 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
....++|.|+..+|..+.+.|..++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 84 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTCBTGGGTCCTTCEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh-hhEEEEECCeECCCcCcHHHCCCCCCCEE
Confidence 457899999999999999999999999999999999999998 68999999999999999999988888763
No 25
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.46 E-value=8.7e-07 Score=54.55 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=63.5
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
..+.|.|+..+|..+.+.|.+++....|....+++.|+++ ...|+.|.|..+..+.|-.++..-++.|.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrL~~~G~~L~d~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH-HHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 4688999999999999999999999999999999999998 68999999999999999999988887763
No 26
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.44 E-value=1.2e-06 Score=58.35 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=64.3
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+...++|.|+..+|..+.|.|.+++....|+...+++.|+.+ ...|++|.|+.+..+.|..++..-++.|
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~~gI~~gs~ 101 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 101 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTTTTTCCTTCE
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh-HHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence 345899999999999999999999999999999999999998 6899999999999999999998877765
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.44 E-value=4.1e-07 Score=56.85 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=62.3
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+..++|.|+..+|..+.+.|.+++....|+...+++.|+++ ...|++|+|+.+..+.|..++..-++.|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~qrL~~~Gk~L~d~~tL~~~~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK-KQQQLEFQGQVLQDWLGLGIYGIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT-TTEEEEETTEECCSSSBHHHHTCCTTEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh-HHEEEEECCEEccCCCCHHHCCCCCCCE
Confidence 35799999999999999999999999999999999999998 6899999999999888988887777655
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.43 E-value=9.3e-07 Score=53.17 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=59.8
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
++|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|+|..+..+.|-.++..-++.|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~~i~~g~~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIYSGKQMNDEKTAADYKILGGSV 66 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBGGGGTCCTTCE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-HHEEEEECCEECCCCCcHHHcCCCCCCE
Confidence 36788888999999999999999999999999999998 6899999999999888988888777765
No 29
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.41 E-value=4.6e-06 Score=56.90 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+...|+|.|+.. |..+.+.|..++....|+...+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~dygI~~gst 97 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQT-DQLVLIFAGKILKDQDTLIQHGIHDGLT 97 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCS-SSEEEEETTEEESTTSCGGGTTCSSSEE
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCc-ceEEEEECCEEcCCCCCHHHcCCCCCCE
Confidence 456799999998 89999999999999999999999999998 6899999999999888988887776655
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=6.6e-07 Score=57.94 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..+..++|.|+..+|..+.+.|.+++....|....+++.|+.+ ...|++|+|..+..+.|-.++..-++.|
T Consensus 18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 88 (98)
T ss_dssp ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTCBSGGGTCCTTEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh-hHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence 3567899999999999999999999999999999999999998 6899999999999999999988777765
No 31
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.40 E-value=1.2e-06 Score=55.25 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=62.0
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+..++|.|+..+|..+.|.|..++....|+...+++.|+.+ ...|++|.|+.+..+.|-.++.. ++.|
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrLi~~Gk~L~d~~tL~~~~i-~g~~ 70 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS-EKQRLIYQGRVLQDDKKLQEYNV-GGKV 70 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBGGGGTC-TTEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEECCeECCCCCCHHHcCC-CCcE
Confidence 46799999999999999999999999999999999999998 68999999999999989998887 6554
No 32
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.39 E-value=1.3e-06 Score=52.54 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=59.1
Q ss_pred EEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 31 KLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+|.|+..+|..+.+.|..++....|....+++.|+++ ...|+.|+|..+..+.|-.++..-++.|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~~i~~g~~ 66 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQREST 66 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTCBTGGGTCCTTCE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEECCeECCCCCcHHHcCCCCCCE
Confidence 5788888999999999999999999999999999998 6899999999999888988888777765
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.36 E-value=1.3e-06 Score=55.55 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=61.0
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
++|.|+..+|..+.+.|..++....|+...+++.|+.+ ...|++|+|..+..+.|-.++..-++.|.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~-~~qrL~~~G~~L~d~~tL~~~~i~~~~~i 68 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 68 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh-hHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 56788888999999999999999999999999999998 68999999999999999999988777663
No 34
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=2.7e-06 Score=52.04 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=63.0
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+..++|.|+..+|..+.+.|..++....|....+++.|+.+ ...|+.|.|+.+..+.|-.++..-++.|.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 74 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV-RQQRLLFKGKALADGKRLSDYSIGPNSKL 74 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT-TTCEEEETTEECCTTSBGGGGTCCSSBCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-HHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 45788999988899999999999999999999999999998 68999999999998889988888777764
No 35
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.33 E-value=2.4e-06 Score=54.62 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=61.5
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
...|+|.|+.. |..+.+.|..++....|.+..+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~gi~~g~~ 82 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA-DRLVLIFTGKILRDQDILSQRGILDGST 82 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT-TTBCCEETTEECCTTSCHHHHTCCTTEE
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEECCEECCCcCCHHHCCCCCCCE
Confidence 46899999998 99999999999999999999999999998 6899999999999888988887777655
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.28 E-value=4e-06 Score=55.53 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=63.4
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
..++|+|+..+|..+.+.|..++....|+...+++.|+.+ ...|++|+|+.+..+.|..++..-++.|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT-TTEEEEETTEECCSSCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc-ccEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 5799999999999999999999999999999999999998 68999999999999889999888777653
No 37
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.26 E-value=2.3e-06 Score=54.25 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=61.8
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
..++|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|.|..+..+.|-.++..-++.|.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT-TTEEEESSSSCCCTTSBHHHHHCSTTCEE
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh-hHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 3588999998999999999999999999999999999998 68999999999988889888877777653
No 38
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.26 E-value=1.4e-06 Score=57.26 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
....++|.|+..+|..+.+.|..++....|+...+++.|+.+ ...|++|.|..+..+.|-.++..-++.|.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEP-GSQRWFFSGRPLTDKMKFEELKIPKDYVV 90 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCS-TTCEEEETTEECCTTSHHHHCCCSSSCEE
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCc-ccEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 456799999999999999999999999999999999999998 68999999999988888888887777653
No 39
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.26 E-value=4.1e-06 Score=50.76 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=59.1
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
++|.|+. .|..+.+.|..++....|....+++.|+++ ...|+.|.|..+..+.|-.++..-++.|
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~-~~qrL~~~gk~L~d~~tL~~~~i~~g~~ 69 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV-ANQRLIYSGKILKDDQTVESYHIQDGHS 69 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCH-HHEEEEECCeEcCCCCCHHHcCCCCCCE
Confidence 7888888 888899999999999999999999999998 6899999999999888988887777765
No 40
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.25 E-value=3.3e-06 Score=54.28 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=59.3
Q ss_pred EEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 31 KLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+|+|+..+|..+.+.|..++....|....+++.|+++ ...|++|+|+.+..+.|..++..-++.|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~-~~qrL~~~Gk~L~D~~tL~~~gi~~g~~ 66 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 66 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCG-GGEEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCCCCHHHcCCCCCCE
Confidence 5788888999999999999999999999999999998 6899999999999888999888877765
No 41
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.16 E-value=9.4e-06 Score=49.59 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=60.0
Q ss_pred ceEEEEeccCCCEE-EEE-EcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 29 YIKLKVLSSDSNEI-HFR-VKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 29 ~I~lkV~~qdg~ev-~Fk-IK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
.+.|.|+..+|..+ .+. |.+++....|....+++.|+.+ ...|+.|.|..+..+.|-.++..-++.|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~-~~qrL~~~g~~L~d~~tL~~~~i~~g~~ 70 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP-GLQRLFYRGKQMEDGHTLFDYEVRLNDT 70 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTCBTTTTTCCTTCE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh-hhEEEEECCEECCCCCCHHHcCCCCCCE
Confidence 46788888899886 898 9999999999999999999998 6899999999999888999888777765
No 42
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.15 E-value=9.5e-06 Score=50.82 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=62.0
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
.+..|+|.|+..+|..+.+.|.+++....|....+++.|+.+ ...|+.|.|+.+..+.|-.++.. ++.|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~~i-~g~~ 82 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS-EKQRLIYQGRVLQDDKKLQEYNV-GGKV 82 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBGGGGTC-TTEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEECCEECCCCCcHHHcCC-CCcE
Confidence 346799999999999999999999999999999999999998 68999999999999999998887 7654
No 43
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.14 E-value=7.3e-06 Score=51.99 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=60.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
-+.|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|+|..+..+.|..++..-++.|
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~gi~~g~~ 75 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 75 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTSBSGGGTCCTTCE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-hhEEEEECCEECCCCCcHHHcCCCCCCE
Confidence 356788889999999999999999999999999999998 6899999999999888999988877765
No 44
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=1.7e-05 Score=51.89 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+...|+|+|+...|. +.+.|..++.+..|+...+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~gi~~g~~ 82 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP-DQLVLIFAGKILKDPDSLAQCGVRDGLT 82 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCT-TTEEEEETTEECCTTSCHHHHTCCTTEE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHcCCCCCCE
Confidence 357799999998885 68999999999999999999999998 6899999999998888888777666554
No 45
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.06 E-value=1.8e-05 Score=53.18 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=61.4
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..+.|.|+..+|..+.+.|.+++....|.+..+++.|+++ ...|+.|+|..+..+.|..++..-++.|
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~qrL~~~g~~L~d~~tL~~~~i~~~~~ 142 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 142 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcCh-hhEEEEECCEECCCCCCHHHcCCCCCCE
Confidence 3477888888999999999999999999999999999998 6899999999999988999988777765
No 46
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.05 E-value=1.3e-05 Score=50.81 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=60.3
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+.|.|+..+|..+.+.|.+++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l 67 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-QQQRLIYSGKQMNDEKTAADYKILGGSVL 67 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-hHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 35778888999999999999999999999999999998 68999999999999999999888777653
No 47
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.03 E-value=7.7e-06 Score=52.56 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=57.9
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
...++|.|+. |..+.+.|.+++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~y~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAP-EDQVVLLAGAPLEDEATLGQCGVEALTT 83 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCG-GGCEEEETTEECCTTSBHHHHTCCSSCE
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcCh-hHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence 3568888887 88999999999999999999999999998 6899999999998888888887777665
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=97.99 E-value=3.3e-05 Score=50.44 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=61.0
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+...++|.|+.. |..+.+.|..++....|....+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~gI~~g~~ 90 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT-DQLVLIFAGKILKDQDTLSQHGIHDGLT 90 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCG-GGEEEEETTEEECTTCCTGGGTCCTTCE
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHcCCCCCCE
Confidence 346788899888 88899999999999999999999999998 6899999999999888988887777665
No 49
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=97.99 E-value=2.4e-05 Score=52.03 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
..++-|.|.|++..|..+.++|.++.....|.+.-+++.|+.+ ...|+.|.|+.+..+.|-.+.+.-|+.|+
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~-~qQrLif~Gk~LkD~~TL~dY~I~dgstL 88 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP-NKIVLQKGGSVLKDHISLEDYEVHDQTNL 88 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH-HHEEEEeCCEEccCcCCHHHcCCCCCCEE
Confidence 4567999999999999999999999999999999999999998 68999999999999999999999998875
No 50
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.98 E-value=2.5e-05 Score=48.85 Aligned_cols=69 Identities=9% Similarity=0.007 Sum_probs=60.3
Q ss_pred CcceEEEEeccCC-CEEEE-EEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDS-NEIHF-RVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg-~ev~F-kIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
...++|.|+..+| ..+.+ .|.+++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~-~~qrL~~~gk~L~d~~tL~~~~i~~g~~ 75 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP-ECQRLFYRGKQLENGYTLFDYDVGLNDI 75 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT-TTEEEEETTEECCSSSBHHHHTCCTTCE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh-hhEEEEECCeECCCCCCHHHCCCCCCCE
Confidence 3568899998889 68899 59999999999999999999998 6899999999998888888777666654
No 51
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=97.96 E-value=4.9e-05 Score=46.89 Aligned_cols=68 Identities=6% Similarity=-0.010 Sum_probs=60.6
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHH---hcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER---VENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r---~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..++|.|+..+|..+.+.|..++....|....+++ .|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV-AGQKLIYAGKILSDDVPIRDYRIDEKNF 74 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCG-GGEEEEETTEECCTTSBGGGGCCCTTSE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCH-HHeEEEECCEECcCCCCHHHcCCCCCCE
Confidence 46888998889999999999999999999999998 78988 6899999999999888988887777765
No 52
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.96 E-value=2.4e-05 Score=54.65 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
....+.|.|+..+|..+.+.|..++....|+...+++.|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~QrL~~~g~~L~d~~tL~~~~i~~~~~ 86 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 86 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTCBTGGGTCCTTCE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-HHEEEEECCccccccCCHhHcCCcccce
Confidence 456799999999999999999999999999999999999998 5899999999999999999888777665
No 53
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=97.92 E-value=3e-05 Score=50.62 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..+..|+|.|+...|. +.+.|..++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~ygI~~gst 87 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP-DQLVLIFAGKILKDPDSLAQCGVRDGLT 87 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBHHHHTCCTTCE
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHCCCCCCCE
Confidence 3557899999998885 68999999999999999999999998 6899999999998888888877666654
No 54
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=97.84 E-value=7.3e-05 Score=51.27 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=63.1
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+..+.|.|+..+|..+.+.|.++.....|....+++.|+++ ...|+.|+|..+..+.|-.++..-++.|.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~G~~L~d~~tL~~y~i~~g~~l 148 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-DLFWLTFEGKPLEDQLPLGEYGLKPLSTV 148 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH-HHEEEEECCeecCCCCCHHHcCCCCCCEE
Confidence 35678889999999999999999999999999999999998 68999999999999999999887777663
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.04 E-value=2.4e-06 Score=51.94 Aligned_cols=66 Identities=11% Similarity=-0.040 Sum_probs=59.0
Q ss_pred EEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 31 KLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
.|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|+|..+..+.|-.++..-++.|.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-~~qrL~~~gk~L~d~~tL~~~~i~~g~~i 67 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPA-DQLRVIFAGKELPNHLTVQNCDLEQQSIV 67 (76)
Confidence 4677788899889999999999999999999999998 68999999999998889998888777664
No 56
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.83 E-value=6.4e-05 Score=48.15 Aligned_cols=66 Identities=5% Similarity=0.015 Sum_probs=58.0
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHH---hcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER---VENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r---~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
++|.|+..+|..+.+.|..++....|....+++ .|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~-~~qrLi~~Gk~L~D~~tL~~ygI~~g~~ 69 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPV-AGQKLIYAGKILNDDTALKEYKIDEKNF 69 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCT-TTEEEEETTEECCTTSBGGGGTCCSSSE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCCh-hhEEEEECCEECCCcCcHHHCCCCCCCE
Confidence 357788888999999999999999999999999 68988 6899999999998888888887777665
No 57
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=3.1e-05 Score=50.95 Aligned_cols=66 Identities=5% Similarity=0.062 Sum_probs=59.2
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
++|.|+..+|..+.+.|..+.....|....+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEE-SQIKLIYSGKVLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCG-GGCEEEETTEECCTTSBTTTTTCCTTCE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh-hhEEEEECCEECCCcCCHHHcCCCCCCE
Confidence 56788888999999999999999999999999999988 6899999999999998998888777765
No 58
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.82 E-value=3.6e-05 Score=49.07 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=58.3
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCC-CCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQT-HGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~-~TP~~L~~~~~~~ 96 (98)
...|+|.|+..+|..+.+.|.++.....|+...+++. + ...|++|.|+.+..+ .|-.++..-++.+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~-~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~ 71 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---E-SQMKLIYQGRLLQDPARTLSSLNITNNCV 71 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---T-TTCEEEETTEECCCSSCBTTTTTCCTTEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---c-CcEEEEECCEEccCCcCCHHHcCCCCCCE
Confidence 4579999998899999999999999999999999988 4 479999999999998 8999887777654
No 59
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.76 E-value=8.9e-05 Score=49.69 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=58.3
Q ss_pred EEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 31 KLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
.|.|+..+|..+.+.|.+++.+..|....+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~L~~~g~~L~d~~tL~~~~i~~~~~ 66 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 66 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-HHeEEEECCeECcCcccHHHhccCCCCe
Confidence 5777778899999999999999999999999999998 6899999999998888988887777665
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.2e-05 Score=51.44 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=59.3
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
.+-.|+|+|+. .|..+.+.|..+.....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~~gI~~g~t 93 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV-ANQRLIYSGKILKDDQTVESYHIQDGHS 93 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCS-TTCCEEETTEECCTTSBTTTTTCCTTEE
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcCh-HHEEEEECCEECCCcCcHHHCCCCCCCE
Confidence 34578889987 888889999999999999999999999998 5899999999999999999988777765
No 61
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.00026 Score=48.93 Aligned_cols=69 Identities=14% Similarity=0.001 Sum_probs=62.3
Q ss_pred CcceEEEEe-ccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVL-SSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~-~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
...|+|||+ ...|..+.+-+..++.++.|.+..+.+.++.. ..+|+.|+|+-+..++|-.++..-++.|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~-e~qrLIy~GKiLKD~eTL~~~gIk~g~T 82 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPH-SVLQIRYSGKILKNNETLVQHGVKPQEI 82 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCT-TTEEEEETTEEECSSCCHHHHSCCSSCE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCCh-HHEEEEECCeEcCCcchHHHcCCCCCCE
Confidence 445888887 67788999999999999999999999999988 6899999999999999999988888776
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0002 Score=47.73 Aligned_cols=67 Identities=9% Similarity=0.120 Sum_probs=59.9
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
...|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|.|..+..+.|-.++..-++.|
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~ygI~~gst 75 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIWAGKQLEDGRTLSDYNIQREST 75 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTCBTTTTTCCSSCE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcCh-HHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence 456777788999999999999999999999999999998 6899999999999888988887777665
No 63
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=97.57 E-value=0.00021 Score=50.78 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=59.6
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+.|.|+..+|..+.+.|.++.....|....+++.|+.+ ...|+.|.|+.+..+.|-.++..-++.|
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~y~I~~gst 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 66 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCT-TTEEEEETTEECCTTSBGGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCH-HHEEEEECCccccCcCcHHHcCCCCCCE
Confidence 35778889999999999999999999999999999998 5899999999999998999888777665
No 64
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=97.52 E-value=0.00031 Score=44.36 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=60.1
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcc-cCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLP-FGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~r-I~~~~TP~~L~~~~~~~ 96 (98)
.+.+|.|+.-.|..+.+.|.++.....|....+++.|+.+ ...|+.|.|.. +..+.|=.++..-++.|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~ 77 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPV-SKQTLIVDGIVILREDLTVEQCQIVPTSD 77 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-GGEEEEETTEECCCSSSBHHHHTCCTTSC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcCh-HHEEEEECCEEecCCcCCHHHcCCCCCCE
Confidence 5788999999999999999999999999999999999998 68999999998 88777777776666655
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=97.52 E-value=0.00026 Score=51.75 Aligned_cols=68 Identities=10% Similarity=0.075 Sum_probs=62.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
.+.|.|+..+|..+.+.|.++.....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~-~~QrLi~~Gk~L~D~~tL~dygI~~gstI 172 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 172 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCCEEETTEECCTTCBGGGGTCCTTCEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCH-HHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 389999999999999999999999999999999999998 68999999999999999999887777653
No 66
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.47 E-value=0.00046 Score=46.01 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=61.6
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+-|.|.|+...|..+.+.|.++.....|...-+++.|+++ ...|+.|.|..+..+.|-.+...-++.|+
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~-~qQrLi~~Gk~L~D~~TL~dygI~~gstl 95 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRW-NKIVLKKWYTIFKDHVSLGDYEIHDGMNL 95 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCG-GGCEEEETTEECCSSCBHHHHTCCTTEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH-HHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 4599999999999999999999999999999999999998 68999999999988888887776666553
No 67
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.46 E-value=0.00035 Score=44.96 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=51.8
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNS 94 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~ 94 (98)
...|+|+|+. .|..+.+.|..++.+..|...-+++.|+.+ ...|++|.|..+ .+.|-.++..-++
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~-~~QrL~~~Gk~L-dd~tL~~~~i~~g 79 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPP-AMQKVMYKGLVP-EDKTLREIKVTSG 79 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCS-TTCCCBSSSBCC-SSSBHHHHCCCTT
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEECCeeC-CcCcHHHCCCCCC
Confidence 4578888874 577888999999999999999999999998 589999999988 4445444433333
No 68
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=97.43 E-value=2e-05 Score=53.37 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=0.0
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+.|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|.|..+..+.|..++..-++.|.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (128)
T ss_dssp --------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcCh-HHEEEEECCEECCCCCchhhhccCCCCEE
Confidence 35677788899999999999999999999999999998 58999999999999999999988887764
No 69
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=97.40 E-value=0.00045 Score=45.42 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=57.9
Q ss_pred CCCCCCcceEEEEeccCCCEEEE--EEcCCCchHHHHHHH-HHHhcCCCCceeeeeeCCcccCCCCCcCceee-ccCCc
Q psy16998 22 DGGDNVEYIKLKVLSSDSNEIHF--RVKMTTPMGKLKKSY-SERVENKPMYKAMPMGTGLPFGQTHGGNSFYC-VNSGT 96 (98)
Q Consensus 22 ~~~~~~~~I~lkV~~qdg~ev~F--kIK~~T~L~KLm~aY-c~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~-~~~~~ 96 (98)
+.+.....|+|.|+...|....+ .|.++.....|.... .++.|+.+ ...|++|.|..+..+.|-.++.. -++.|
T Consensus 12 ~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~-~~QrLi~~Gk~L~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 12 DDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHI-SEIKLLLKGKVLHDNLFLSDLKVTPANST 89 (98)
T ss_dssp ------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCG-GGEEEEETTEEECTTCBGGGSCCBTTBCE
T ss_pred cccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCCh-hhEEEEECCEECcCcCCHHHcCcCCCCCE
Confidence 34445678999999988986655 556999999999998 77779988 68999999999999989888876 56655
No 70
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.37 E-value=0.00062 Score=44.69 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=61.0
Q ss_pred CcceEEEEecc---CCCEEEEEEcC-CCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSS---DSNEIHFRVKM-TTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~q---dg~ev~FkIK~-~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
+..|+|.|+.. +|..+.+.|.+ ++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.|
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~-~~QrL~~~Gk~L~D~~tL~~y~I~~g~~ 97 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPA-NKQKLSGKAGFLKDNMSLAHYNVGAGEI 97 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCT-TTSEEECSSSBCCTTSBTTTTTCSSSCE
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCH-HHeEEEECCEECCCCCcHHHCCCCCCCE
Confidence 45799999987 88899999998 9999999999999999998 6899999999998888888877777665
No 71
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.29 E-value=0.00066 Score=43.67 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=57.5
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCC-CCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQT-HGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~-~TP~~L~~~~~~~ 96 (98)
...|+|.|+...| .+.+.|.+++....|....+++.|+++ ...|++|.|..+..+ .|-.++..-++.|
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~~tL~~ygI~~gst 81 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPI-KRMQLYYSGIELADDYRNLNEYGITEFSE 81 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCT-TTEEEEETTEEECCTTSBHHHHTCCTTEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCH-HHEEEEECCEECCCCcccHHHCCCCCCCE
Confidence 4568899998877 788999999999999999999999998 689999999999877 6766665555543
No 72
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=97.29 E-value=0.00055 Score=45.30 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred cceEEEEeccC----------CCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSD----------SNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qd----------g~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..|+|+|+..+ |..+.+.|..++....|....+++.|+.+ ...|+.|.|..+..+.|-.++..-++.|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPA-GKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCT-TTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCCh-HHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 46777777653 66789999999999999999999999998 6899999999998887877777666654
No 73
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=97.19 E-value=5.4e-05 Score=53.52 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=0.0
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
+.|.|+..+|..+.+.|.+++....|....+++.|+++ ...|++|.|..+..+.|-.++..-++.|.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~dygI~~gstL 67 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (152)
T ss_dssp --------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-HHEEEEECCEEccccCcHHHcCCCCCCEE
Confidence 35677788899999999999999999999999999998 68999999999999999999988877764
No 74
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.08 E-value=0.0013 Score=42.95 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=53.8
Q ss_pred cceEEEEeccCC---CEEEEE--------EcCC-CchHHHHHHHHHHh--cCCCCce-eeeeeCCcccCCCCCcCceeec
Q psy16998 28 EYIKLKVLSSDS---NEIHFR--------VKMT-TPMGKLKKSYSERV--ENKPMYK-AMPMGTGLPFGQTHGGNSFYCV 92 (98)
Q Consensus 28 ~~I~lkV~~qdg---~ev~Fk--------IK~~-T~L~KLm~aYc~r~--gl~~~~s-~rFlfDG~rI~~~~TP~~L~~~ 92 (98)
..|+|.|+...+ ....+. |.++ +....|....+++. |+.+ .. .|++|.|+.+..+.|-.++..-
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~-~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPD-PELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCC-SSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCCh-hhcEEEEECCeECCCCCcHHHcCCC
Confidence 346666666666 666777 4454 99999999999999 9998 58 9999999999888888777766
Q ss_pred cCCc
Q psy16998 93 NSGT 96 (98)
Q Consensus 93 ~~~~ 96 (98)
++.|
T Consensus 90 ~g~~ 93 (107)
T 1x1m_A 90 PGST 93 (107)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 6654
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=96.99 E-value=0.0024 Score=44.39 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=59.9
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCcC
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGTS 97 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~ 97 (98)
.+.|.|+..+|..+.+.|.++.....|...-+.+.|+.+ ...|+.|+|+.+..+.|-.++..-++.|.
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~L~D~~tL~~y~i~~g~tl 163 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTL 163 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCCEEETTEECCTTSBSGGGTCCTTCEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc-eeEEEEECCccCCCCCcHHHhCCCCCCEE
Confidence 456667778899999999999999999999999999998 68999999999998889888887777653
No 76
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.94 E-value=0.0017 Score=40.99 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=54.7
Q ss_pred cceEEEEeccCCC--EEEEEEcCCCchHHHHHHHHHHh--cCCCCceeeeeeCCcccCCCCCcCce--eeccCC
Q psy16998 28 EYIKLKVLSSDSN--EIHFRVKMTTPMGKLKKSYSERV--ENKPMYKAMPMGTGLPFGQTHGGNSF--YCVNSG 95 (98)
Q Consensus 28 ~~I~lkV~~qdg~--ev~FkIK~~T~L~KLm~aYc~r~--gl~~~~s~rFlfDG~rI~~~~TP~~L--~~~~~~ 95 (98)
..|+|.|+...|. .+.+.+..++....|....+++. |+.+ ...|+.|.|+.+..+.|-.++ ..-++.
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~-~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~ 78 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRP-EDQRLIYSGKLLLDHQCLRDLLPKQEKRH 78 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCT-TTCEEEETTEECCSSSCHHHHSCSSSCSE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCCh-HHeEEEECCEECcCcCCHHHHhcCCCCCC
Confidence 4688888888887 56666779999999999999998 9988 589999999999888777666 444443
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=96.88 E-value=0.0037 Score=42.60 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=57.9
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeee-e-CCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPM-G-TGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFl-f-DG~rI~~~~TP~~L~~~~~~~ 96 (98)
++|.|+..+|..+.+.|.++.....|...-+++.|+++ ..-|+. | .|..+..+.|=.++..-++.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~ 70 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA-FQQRLAVHPSGVALQDRVPLASQGLGPGST 70 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCG-GGEEEEEETTCCBCCTTSCGGGGTCCTTCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH-HHEEEEEcCCCCCCCCCCCHHHcCCCCCCE
Confidence 56788888999999999999999999999999999988 589999 9 799998888888877666554
No 78
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.76 E-value=0.0015 Score=43.24 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=49.2
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCC
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTH 84 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~ 84 (98)
..|.|...+|+...+||-++|.|..|.+.-|+++|+++ ....+.|++..|....
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~-~~~~Lkh~~k~lDLSl 63 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNP-SEYDLKFQRTVLDLSL 63 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCG-GGCEEEETTEEESSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCCh-hhCeEEeCCEeccccc
Confidence 37889999999999999999999999999999999998 6899999999886654
No 79
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=96.72 E-value=0.004 Score=39.08 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=51.5
Q ss_pred cCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 37 SDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 37 qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
-.|..+.+.|..++....|....+++.|+.+ ...|++|.|..+..+.|-.++..-++.+
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~gi~~g~~ 77 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLP-RGQKLIFKGKVLVETSTLKQSDVGSGAK 77 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCT-TTCEEEETTEECCTTCBTTTTTCCTTEE
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcCh-HHEEEEECCeECCCcCCHHHCCCCCCCE
Confidence 4688888999999999999999999999998 6899999999998888888777666654
No 80
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.65 E-value=0.0068 Score=39.01 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=55.0
Q ss_pred cceEEEEeccCCCEE-EEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEI-HFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev-~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..|+|+|+. .|..+ .+.|..+..+..|...-+++.|+.+ ...|++|.|..+..+ |-.++..-++.|
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~-~~QkLi~~Gk~L~D~-tL~~~~I~~g~~ 72 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQP-ARQKVMVKGGTLKDD-DWGNIKMKNGMT 72 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCT-TTSCCEETTEECCSS-CCCSCCCCSSCE
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEECCcCCCCC-CHHHCCCCCCCE
Confidence 468888885 56666 4999999999999999999999998 589999999999877 777776656554
No 81
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0024 Score=41.00 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=53.4
Q ss_pred eEEEEeccCCCEEEEEEc--CCCchHHHHHHH-HHHhcCCCCceeeeeeCCcccCCCCCcCceee
Q psy16998 30 IKLKVLSSDSNEIHFRVK--MTTPMGKLKKSY-SERVENKPMYKAMPMGTGLPFGQTHGGNSFYC 91 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK--~~T~L~KLm~aY-c~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~ 91 (98)
+.|.|+...|..+.+.|. ++.....|...- +++.|+.+ ...|+.|.|+.+..+.|-.++..
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~-~~QrLi~~Gk~L~D~~tL~~y~I 65 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHI-SEIKLLLKGKVLHDNLFLSDLKV 65 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSS-TTEEEEETTEECCTTCBHHHHCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCCh-HHEEEEECCEECcCcCCHHHcCC
Confidence 568888899988888766 999999999998 99999998 58999999999998888777665
No 82
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.54 E-value=0.0059 Score=39.43 Aligned_cols=67 Identities=6% Similarity=-0.050 Sum_probs=52.8
Q ss_pred ceEEEEeccC----CCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCC-CCcCceeeccCCc
Q psy16998 29 YIKLKVLSSD----SNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQT-HGGNSFYCVNSGT 96 (98)
Q Consensus 29 ~I~lkV~~qd----g~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~-~TP~~L~~~~~~~ 96 (98)
.+.|.|+... |..+.+.|..++....|....+++.|+.+ ...|++|.|..+..+ .|-.++..-++.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~gk~L~D~~~tL~~ygI~~g~~ 78 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA-EEAQIVYMEQLLTDDHCSLGSYGLKDGDM 78 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG-GGBCEEETTEEECCSSSBHHHHTCCTTEE
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh-HHeEEEECCEECCCCcccHHHCCCCCCCE
Confidence 4566665543 36778999999999999999999999998 689999999998766 4666665555544
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=96.39 E-value=0.011 Score=46.05 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=61.1
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
...++|.|+..+|..+.+.|..++....|...-+++.|+.+ ...|++|.|+.+..+.|-.++..-++.|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~-~~QRLi~~Gk~L~D~~TLsdygI~~gst 299 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKEST 299 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-HHEEEEeCCeecCCCCCHHHcCCCCCCE
Confidence 35688899998999999999999999999999999999998 6899999999998888888877766665
No 84
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.37 E-value=0.01 Score=37.20 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=51.4
Q ss_pred cceEEEEeccCCCEEEEEEcCC-----CchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCC-CcCceeecc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMT-----TPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTH-GGNSFYCVN 93 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~-----T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~-TP~~L~~~~ 93 (98)
..|+|.|+. .|....+.|..+ +.+..|...-+++.|+.+ ...|++|.|..+..++ |=.++..-+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~-~~qrL~~~Gk~L~D~~~~L~~~~i~~ 75 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ-SFQKLIFKGKSLKEMETPLSALGIQD 75 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT-TTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH-HHEEEEECCeecCCCcccHHHCCCCC
Confidence 468899987 477788999985 999999999999999998 6899999999997744 444443333
No 85
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=96.36 E-value=0.0052 Score=40.27 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=51.2
Q ss_pred CCCcceEEEEeccCCC--EEEEEEcCCCchHHHHHHHHHHh-cCCCCceeeeeeCCcccCCCCCcCce
Q psy16998 25 DNVEYIKLKVLSSDSN--EIHFRVKMTTPMGKLKKSYSERV-ENKPMYKAMPMGTGLPFGQTHGGNSF 89 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~--ev~FkIK~~T~L~KLm~aYc~r~-gl~~~~s~rFlfDG~rI~~~~TP~~L 89 (98)
.....|+|+|+..+|. .+.+.|.+++....|...-+++. |..+....|+.|.|+.+..+.|-.++
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHH
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHH
Confidence 3456799999988887 67889999999999999999875 44432589999999999988787765
No 86
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.27 E-value=0.005 Score=40.95 Aligned_cols=66 Identities=5% Similarity=-0.102 Sum_probs=54.0
Q ss_pred ceEEEEeccC--CCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeeccCC
Q psy16998 29 YIKLKVLSSD--SNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSG 95 (98)
Q Consensus 29 ~I~lkV~~qd--g~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~ 95 (98)
.|+|++.+.. +..+.+.|.++.....|...-+++.|+++ ...|+.|.|..+..+.|-.+...-++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~-~qQrLI~~GKiL~D~~TL~~y~I~~gs 84 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQE-NYIKIVINKKQLQLGKTLEEQGVAHNV 84 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCS-TTCEEEETTEECCTTSBHHHHTCCSSE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCH-HHeEEEeCCeECCCCCcHHHcCCCCCC
Confidence 4555555533 77899999999999999999999999998 589999999999988887666554443
No 87
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.14 E-value=0.0062 Score=40.59 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=58.1
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCC--------------ceeeeeeCCcccCC-CCCcCceee
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPM--------------YKAMPMGTGLPFGQ-THGGNSFYC 91 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~--------------~s~rFlfDG~rI~~-~~TP~~L~~ 91 (98)
+..++|.|+.-+|..+.+.|.++.....|..+-.++.|+.+. ..+|+.|.|+.+.. +.|-.++..
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 456999999999999999999999999999999999987541 24799999999974 468777776
Q ss_pred ccCCc
Q psy16998 92 VNSGT 96 (98)
Q Consensus 92 ~~~~~ 96 (98)
-|++|
T Consensus 85 ~~g~~ 89 (105)
T 1v2y_A 85 RNRDE 89 (105)
T ss_dssp CSSEE
T ss_pred CCCCE
Confidence 66655
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=96.13 E-value=0.0063 Score=38.08 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=50.7
Q ss_pred eEEEEeccCCCEEEEE-EcCCCchHHHHHHHHHHhcCCCCceeeeeeC--CcccC---CCCCcCceeeccCCc
Q psy16998 30 IKLKVLSSDSNEIHFR-VKMTTPMGKLKKSYSERVENKPMYKAMPMGT--GLPFG---QTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~qdg~ev~Fk-IK~~T~L~KLm~aYc~r~gl~~~~s~rFlfD--G~rI~---~~~TP~~L~~~~~~~ 96 (98)
++|+|+..+|..+ +. +..++.+..|....+++.|+.+ ...|++|. |..+. .+.|-.++...+|.+
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~-~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~ 71 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAP-GSQRILVGYPPECLDLSDRDITLGDLPIQSGDM 71 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCT-TTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCE
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCc-cceEEEeCCCCcccccCCCCCCHHHcCCCCCCE
Confidence 3578888999775 66 8899999999999999999976 46788775 46663 455777777777665
No 89
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=96.12 E-value=0.005 Score=38.91 Aligned_cols=66 Identities=11% Similarity=0.001 Sum_probs=52.4
Q ss_pred cceEEEEeccCCCEEEE-EEcCCCchHHHHHHHHHHhcCCCCceeeee---eCCcccCCCCCcCceeeccCC
Q psy16998 28 EYIKLKVLSSDSNEIHF-RVKMTTPMGKLKKSYSERVENKPMYKAMPM---GTGLPFGQTHGGNSFYCVNSG 95 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~F-kIK~~T~L~KLm~aYc~r~gl~~~~s~rFl---fDG~rI~~~~TP~~L~~~~~~ 95 (98)
..|+|+|+. .|..+.+ .|..+..+..|...-+++.|+.+ ...|++ |.|..+..+.|-.++..-++.
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~-~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~ 75 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP-ERQKLLGLKVKGKPAENDVKLGALKLKPNT 75 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT-TTCEEESCEETTEECCTTSBHHHHTCCTTE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH-HHeEEEeeccCCcCcCCCCCHHHcCCCCCC
Confidence 357777775 5777778 88999999999999999999998 589999 999988776665555444443
No 90
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=96.08 E-value=0.018 Score=39.35 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHH------HhcC--CCCceeeeeeCCcccCCCCCcCceeeccC
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSE------RVEN--KPMYKAMPMGTGLPFGQTHGGNSFYCVNS 94 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~------r~gl--~~~~s~rFlfDG~rI~~~~TP~~L~~~~~ 94 (98)
+...|+|+|+.-+|..+.|.|.+++....|.....+ +-|+ .+ ...|+.|.|+.+..+.|-.++..-.+
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~-~~qrLIy~GK~LeD~~TL~~y~I~~~ 89 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSP-NILRLIYQGRFLHGNVTLGALKLPFG 89 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCG-GGEEEESSSSEEESSCBTGGGCCCTT
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCCh-HHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 345799999999999999999999999999999998 4565 35 58999999999999889887665433
No 91
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.01 E-value=0.077 Score=35.78 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=55.3
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHH------hcC--CCCceeeeeeCCcccCCCCCcCceee
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER------VEN--KPMYKAMPMGTGLPFGQTHGGNSFYC 91 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r------~gl--~~~~s~rFlfDG~rI~~~~TP~~L~~ 91 (98)
+.+.|+|+|+.-.|..+.|.|.++.....|....+++ -|+ .+ ...|+.|.|..+..+.|-.+...
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~-~qqrLIy~GK~LeD~~TL~~y~I 85 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSP-NILRLIYQGRFLHGNVTLGALKL 85 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCT-TTEEEEETTEEECSSCBTTTTTC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCCh-HHEEEEECCcCCCCCCcHHHcCC
Confidence 3467999999989999999999999999999999994 354 35 58999999999999988877654
No 92
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.96 E-value=0.019 Score=37.46 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=54.2
Q ss_pred cceEEEEeccCCCEEEEEEc-CCCchHHHHHHHHHHhcCCCCceeeeeeCCc-----------cc----CCCCCcCceee
Q psy16998 28 EYIKLKVLSSDSNEIHFRVK-MTTPMGKLKKSYSERVENKPMYKAMPMGTGL-----------PF----GQTHGGNSFYC 91 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK-~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~-----------rI----~~~~TP~~L~~ 91 (98)
..+.|+|+..+|.. .+.|. ++..+..|...-+++.|+.+ ...|+.|+|. .| ..+.|-.++..
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~-~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPI-HNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCT-TTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCc-ccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 34889999999977 68899 99999999999999999988 5789989988 33 45556666666
Q ss_pred ccCCc
Q psy16998 92 VNSGT 96 (98)
Q Consensus 92 ~~~~~ 96 (98)
-++++
T Consensus 84 ~~G~~ 88 (107)
T 1wf9_A 84 AHGSM 88 (107)
T ss_dssp CTTCE
T ss_pred CCCCE
Confidence 66654
No 93
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=95.75 E-value=0.013 Score=46.43 Aligned_cols=68 Identities=7% Similarity=0.022 Sum_probs=57.8
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHH---HhcCCCCceeeeeeCCcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSE---RVENKPMYKAMPMGTGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~---r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~~~~~ 96 (98)
..++|.|+...|..+.+.|..+.....|+...+. +.|+.+ ...|++|.|+.+..+.|-.++..-++.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~-~~QrLiy~GK~L~D~~tL~dygI~~gst 76 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV-AGQKLIYAGKILSDDVPIRDYRIDEKNF 76 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCS-TEEEEESSSSEECSSSBTTTTCCCTTSC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCCh-hheEEEECCeecCCcCCHHHcCCCCCCE
Confidence 4577888888899999999999999999999999 456887 6899999999998888888777666655
No 94
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.32 E-value=0.069 Score=34.47 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=53.6
Q ss_pred CcceEEEEeccCCC--EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeC--Cc---cc-CCCCCcCceeeccCCc
Q psy16998 27 VEYIKLKVLSSDSN--EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGT--GL---PF-GQTHGGNSFYCVNSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg~--ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfD--G~---rI-~~~~TP~~L~~~~~~~ 96 (98)
...|+|.|....+. .+.++|.++.....|...-.++.|+.+ ..-|+.|. |. .+ ..+.|-.++..-++.|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~-~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCA-GTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCT-TTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCH-HHeEEEEecCCcccceeCCCCCCHhHCCcCCCCE
Confidence 57899999876654 789999999999999999999999998 68999997 44 33 4444655555555544
No 95
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=95.32 E-value=0.08 Score=35.35 Aligned_cols=69 Identities=12% Similarity=-0.086 Sum_probs=55.2
Q ss_pred CcceEEEEeccCC--CEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCceeec-cCCc
Q psy16998 27 VEYIKLKVLSSDS--NEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFYCV-NSGT 96 (98)
Q Consensus 27 ~~~I~lkV~~qdg--~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~~~-~~~~ 96 (98)
.-.++|.|.+-.+ ..+.+.|.++.....|.....++.|+++ ..-|+.|.|+-...+.|-.+...- ||+|
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp-~~QRli~ggkll~D~~TL~~ygI~~~G~t 93 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPP-VLQQWVIGQRLARDQETLHSHGVRQNGDS 93 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEEECTTCBTGGGTCCSTTCE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCH-HHEEEeccCeEccCcCcHHHcCCCCCCCE
Confidence 4566777777654 6889999999999999999999999998 578988777755667788887763 6665
No 96
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.07 E-value=0.1 Score=35.90 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=55.2
Q ss_pred cceEEEEeccCCCEE-EEEEcCCCchHHHHHHHHHH-----hcCCCC-ceeeeeeCCcccCCCCCcCceeeccC
Q psy16998 28 EYIKLKVLSSDSNEI-HFRVKMTTPMGKLKKSYSER-----VENKPM-YKAMPMGTGLPFGQTHGGNSFYCVNS 94 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev-~FkIK~~T~L~KLm~aYc~r-----~gl~~~-~s~rFlfDG~rI~~~~TP~~L~~~~~ 94 (98)
+.+.|+|+.-+|..+ .|.+.+++....|...-... -|+.+. ...|+.|.|..+..+.|-.+...-++
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 789999999999999 69999999999999988554 345431 47999999999999989888765544
No 97
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=94.79 E-value=0.11 Score=35.43 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=48.8
Q ss_pred eEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 30 IKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 30 I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
|.|+|+... ..+++.|..+.....|...-+++.|+.+ ...|+.|+|+.+..+.|-.+..
T Consensus 3 mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~egIP~-~qQrLi~~Gk~LeD~~TLsdy~ 61 (118)
T 2fnj_B 3 VFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPP-EEQRLYKDDQLLDDGKTLGECG 61 (118)
T ss_dssp EEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBHHHHT
T ss_pred EEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHhCCCH-HHeEEEECCeECCCCCCHHHcC
Confidence 567776633 4578899999999999999999999998 6899999999998877755433
No 98
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.58 E-value=0.11 Score=32.79 Aligned_cols=67 Identities=10% Similarity=-0.094 Sum_probs=51.2
Q ss_pred ceEEEEeccCCC-EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCC---cc---c-CCCCCcCceeeccCCc
Q psy16998 29 YIKLKVLSSDSN-EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTG---LP---F-GQTHGGNSFYCVNSGT 96 (98)
Q Consensus 29 ~I~lkV~~qdg~-ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG---~r---I-~~~~TP~~L~~~~~~~ 96 (98)
.|+|.|...... .+.++|.++.....|...-+++.|+.+ ...|+.|.| .. + ..+.|-.++..-++.|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~-~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~ 81 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPA-SCMELELYGADDKFYSKLDQEDALLGSYPVDDGCR 81 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCT-TTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCH-HHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCE
Confidence 488888876543 578899999999999999999999998 689999976 43 3 4555666555555443
No 99
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.55 E-value=0.047 Score=34.65 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=54.5
Q ss_pred cceEEEEeccCCCEE--EE-EEcCCCchHHHHHHHHHH-hcCCCCceeeeeeC--CcccCCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEI--HF-RVKMTTPMGKLKKSYSER-VENKPMYKAMPMGT--GLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev--~F-kIK~~T~L~KLm~aYc~r-~gl~~~~s~rFlfD--G~rI~~~~TP~~L~~~~~~~ 96 (98)
..+.|.|+...|.+. .+ .|.++.....|....+++ .|+.+ ...|+.|. |..+..+.|-.++..-++.|
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~-~~QrL~~~~~Gk~L~D~~tL~~y~i~~~st 82 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYP-ARQSLRLDPKGKSLKDEDVLQKLPVGTTAT 82 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCT-TTCCEESSTTSCCCCTTCBTTTSSCCSEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCCh-HHeEEEecCCCcCcCCCCCHHHcCCCCCCE
Confidence 358889998887664 47 899999999999999995 68887 57888877 88998888888776655544
No 100
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=93.71 E-value=0.18 Score=32.66 Aligned_cols=70 Identities=6% Similarity=-0.047 Sum_probs=52.0
Q ss_pred CCcceEEEEeccCC--CEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCc---c---c-CCCCCcCceeeccCCc
Q psy16998 26 NVEYIKLKVLSSDS--NEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGL---P---F-GQTHGGNSFYCVNSGT 96 (98)
Q Consensus 26 ~~~~I~lkV~~qdg--~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~---r---I-~~~~TP~~L~~~~~~~ 96 (98)
....|+|.|..... ..+.++|.++.....|...-.++.|+.+ ..-|+.|.|. . + ..+.|-.++..-++.|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~-~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSV-NSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCT-TSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCH-HHeEEEEecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 35678888887544 4689999999999999999999999998 6899999884 3 2 3333544444444443
No 101
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=93.50 E-value=0.28 Score=32.55 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=51.0
Q ss_pred cceEEEEeccCCC-EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCC---cc---c-CCCCCcCceeeccCC
Q psy16998 28 EYIKLKVLSSDSN-EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTG---LP---F-GQTHGGNSFYCVNSG 95 (98)
Q Consensus 28 ~~I~lkV~~qdg~-ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG---~r---I-~~~~TP~~L~~~~~~ 95 (98)
..|+|.|....+. .+.++|.++.....|...-+++.|+.+ ...|+.|.| .. + ..+.|-.+....++.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~-~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~ 79 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTV-DSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGY 79 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCT-TTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCH-HHeEEEEecCCCccccccCCCcCCHHHCCCCCCC
Confidence 4688999876553 578899999999999999999999998 689999976 32 2 344465555554444
No 102
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=92.56 E-value=0.28 Score=33.49 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=45.3
Q ss_pred CCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 38 DSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 38 dg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
....|++.++++.....|......+.|+.+ ..-|+.|+|+.+..+.|-.+..
T Consensus 10 ~ktTI~ldve~sdTV~~lK~kI~~~~giPp-~qQrLI~~Gk~LeD~kTL~dy~ 61 (118)
T 4ajy_B 10 HKTTIFTDAKESSTVFELKRIVEGILKRPP-DEQRLYKDDQLLDDGKTLGECG 61 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTTTTT
T ss_pred CCEEEEEEcCCCChHHHHHHHHHHHHCCCH-HHeEEEeCCeECCCcCCHHHcC
Confidence 355788999999999999999999999998 5899999999998887765544
No 103
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=92.34 E-value=0.024 Score=41.48 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcC
Q psy16998 31 KLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGN 87 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~ 87 (98)
.|.|+.-+|..+.+.|.++.....|...-.++.|+++ ...|+.|+|..+..+.|-.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~-~qQRLIf~GK~LeD~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEI-DMMTLVNNGFIAPNTELVT 57 (189)
T ss_dssp ---------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcCh-hHEEEEecCeECCCCCccc
Confidence 4566677888999999999999999999999999998 6899999999997766543
No 104
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.49 E-value=0.73 Score=28.97 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=52.1
Q ss_pred CCcceEEEEec---cCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCc-----cc---CCCCCcCceeeccC
Q psy16998 26 NVEYIKLKVLS---SDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGL-----PF---GQTHGGNSFYCVNS 94 (98)
Q Consensus 26 ~~~~I~lkV~~---qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~-----rI---~~~~TP~~L~~~~~ 94 (98)
....|+|.|.. .+|..+..++-+++...+|...-++..|+.+ ...|+.|.+. .+ ....|=.++...||
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~-~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPV-SELLLSYESSKMPGREIELENDLQPLQFYSVENG 84 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCT-TTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCCh-hHeEEEEEcCCCCceeeccCCCcccHhhcCCCCC
Confidence 35678888875 4677889999999999999999999999998 6889888642 22 23334455555565
Q ss_pred Cc
Q psy16998 95 GT 96 (98)
Q Consensus 95 ~~ 96 (98)
++
T Consensus 85 ~~ 86 (97)
T 1wjn_A 85 DC 86 (97)
T ss_dssp CE
T ss_pred CE
Confidence 54
No 105
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=90.91 E-value=0.5 Score=36.49 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=54.4
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeee---eCCcccCCCCCcCceeeccCC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPM---GTGLPFGQTHGGNSFYCVNSG 95 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFl---fDG~rI~~~~TP~~L~~~~~~ 95 (98)
.+.|+|+|+. .|....+.|-.+.....|...-+++.|+.+ ..-|++ |.|..+..+.|-.++..-+|.
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp-~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~ 72 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRP-ERQKLLNLKYKGKTAADNVKISALELKPNF 72 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCG-GGCEETTCBSSSSBCCTTSBTTSSCCC--C
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEeecccCCcccCccccHHHcCCCCCC
Confidence 3568888886 578888999999999999999999999998 578999 899888877777766654443
No 106
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=89.75 E-value=2.9 Score=27.17 Aligned_cols=73 Identities=5% Similarity=-0.087 Sum_probs=47.4
Q ss_pred CCCCCCCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee--CCcccC--CCCCcCceeeccC
Q psy16998 20 SADGGDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG--TGLPFG--QTHGGNSFYCVNS 94 (98)
Q Consensus 20 ~~~~~~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf--DG~rI~--~~~TP~~L~~~~~ 94 (98)
.|........++|.|+-.||..+.-+...+.++..|++ |++..+... ..++|.- =.+.+. .+.|=.++..+++
T Consensus 14 ~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~-fv~~~~~~~-~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~ 90 (109)
T 2cr5_A 14 EEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLD-WMMKVGYHK-SLYRLSTSFPRRALEVEGGSSLEDIGITVD 90 (109)
T ss_dssp CCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHH-HHHHHTCCT-TTEEEECSSSCCBCCCCSSCBHHHHTCSSC
T ss_pred CCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHH-HHHhcCCCC-CCeEEEeCCCCcCCCCCCCCCHHHcCCCCC
Confidence 34333345688999999999999888889999998886 555555544 4566643 344453 2345555444443
No 107
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=88.83 E-value=3.8 Score=27.39 Aligned_cols=72 Identities=8% Similarity=-0.143 Sum_probs=50.9
Q ss_pred CCCCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeee--eCCcccC---CCCCcCceeeccCCc
Q psy16998 23 GGDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPM--GTGLPFG---QTHGGNSFYCVNSGT 96 (98)
Q Consensus 23 ~~~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFl--fDG~rI~---~~~TP~~L~~~~~~~ 96 (98)
+......++|+|+=.||..+.-+...+.+|..|++.-.. .+... ..+.|+ |=.+.+. .+.|=.+|..+++.+
T Consensus 37 ~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~-~~~~~-~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~ 113 (124)
T 1wj4_A 37 IDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQS-KGYPN-ERFELLTNFPRRKLSHLDYDITLQEAGLCPQET 113 (124)
T ss_dssp CCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHH-HHCCT-TTEEEECSSSCCEETSSCSSSCTTTTTCCSSBC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHh-cCCCC-CCeEEecCCCCcCCccCCCCCCHHHCCCCCceE
Confidence 334567889999999999999999999999999875544 46654 456665 3355563 345777777666544
No 108
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=88.25 E-value=2.4 Score=26.03 Aligned_cols=67 Identities=6% Similarity=-0.102 Sum_probs=46.7
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeee--eCCcccC---CCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPM--GTGLPFG---QTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFl--fDG~rI~---~~~TP~~L~~~~~~~ 96 (98)
+..+|+|+-.||..+.-+...+.++..|++ |.+..+.+. ..+.|. |=.+.+. .+.|=.++..+.+.+
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~-fv~~~~~~~-~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~ 77 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFD-FVASKGFPW-DEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQET 77 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHH-HHHHTTCCT-TTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHH-HHHHcCCCC-CCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCE
Confidence 466778888999999889999999998887 555567655 567776 3355563 344666666555443
No 109
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=87.08 E-value=1.6 Score=32.53 Aligned_cols=51 Identities=14% Similarity=-0.180 Sum_probs=40.6
Q ss_pred CCCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 25 DNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 25 ~~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
+....|.++|.=.||..+.|.|..+|.-+.|++.-|++.||....-+-+.|
T Consensus 13 ~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 13 NLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp ----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 345789999999999999999999999999999999999996433344443
No 110
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=86.94 E-value=1.2 Score=30.39 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=38.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcC
Q psy16998 41 EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGN 87 (98)
Q Consensus 41 ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~ 87 (98)
...|||.++++|..|....++..|+++ ..+||++=-.|=+.+.=|+
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~-~~~RlW~~~~RqN~T~Rp~ 102 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQ-DQIRLWPMQARSNGTKRPA 102 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCG-GGCEEEECCCCBTTBCCCC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCc-ccEEEEEeecCCCCCCCCC
Confidence 347999999999999999999999998 6899998766655555454
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=86.71 E-value=2.3 Score=26.99 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=57.8
Q ss_pred CcceEEEEec--cCCCEEEEEEcCCCchHHHHHHHHHHhcCCC----CceeeeeeCCcccCCCCCcCceeeccCCcCC
Q psy16998 27 VEYIKLKVLS--SDSNEIHFRVKMTTPMGKLKKSYSERVENKP----MYKAMPMGTGLPFGQTHGGNSFYCVNSGTSE 98 (98)
Q Consensus 27 ~~~I~lkV~~--qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~----~~s~rFlfDG~rI~~~~TP~~L~~~~~~~~~ 98 (98)
+.||+|.+-= -.+..+=+||-..-.+++|...-.+-++++. +.++|..==|.-+.++++=++....|||.+|
T Consensus 2 ~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 2 GSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp CCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEE
T ss_pred CcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEE
Confidence 4688888863 5788999999999999999999999999875 2567766667777788877777777777643
No 112
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=85.32 E-value=2.8 Score=31.02 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=40.2
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
...|.++|.=-|| ++.|.|..+|.-+.|++.-|++.|+....-|.+.|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~ 67 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQY 67 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEE
Confidence 5789999999999 88999999999999999999999996544444444
No 113
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=84.76 E-value=2.5 Score=30.87 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=38.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
.|+++|.=-|| ++.|.|..+|.-+.|++.-|++.|+....-+.+.|
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 37888888888 78999999999999999999999996544455554
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.46 E-value=2.6 Score=32.07 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=42.9
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
...++.++|.=.||....|.|..+|.-+.|++.-|++.|+.....|.+.+
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 45689999999999999999999999999999999999996544455544
No 115
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=83.09 E-value=1.1 Score=27.73 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=45.6
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcc---c--CCCCCcCceeeccCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLP---F--GQTHGGNSFYCVNSGT 96 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~r---I--~~~~TP~~L~~~~~~~ 96 (98)
+.+.|||++.+|.. .+.|-.++.+..|.+.-+++.++.. ....+.+.-.+ + ..+.|-.+|..-+||+
T Consensus 3 ~~m~lRvrs~~G~~-Ri~v~~~~t~~~L~~~I~~~~~i~~-~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~ 74 (80)
T 2pjh_A 3 ESIIIRVQSPDGVK-RITATKRETAATFLKKVAKEFGFQN-NGFSVYINRNKTGEITASSSKSLHLLKIKHGDL 74 (80)
T ss_dssp CCCCCEEECSSEEE-ECCCCSSCCHHHHHHHHHHHTCCCT-TTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC
T ss_pred CcEEEEEECCCCCE-EEEcCCcChHHHHHHHHHHHcCCCC-CcceEEecCCCCCcccCCCCCCHHHcCCCCCCE
Confidence 34779999999944 4557789999999999999999875 34333333222 2 2455666666666665
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=81.47 E-value=8.2 Score=25.06 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=43.7
Q ss_pred eEEEEec-cCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCC
Q psy16998 30 IKLKVLS-SDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQT 83 (98)
Q Consensus 30 I~lkV~~-qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~ 83 (98)
.-|.|-+ +.+.-..|-|.+...+..+.++-+++.|+.+ ..-|++|.|..+.-+
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~-~~Q~LL~eg~~l~l~ 66 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIIS-SNQELIYEGRRLVLE 66 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCG-GGEEEEETTEEECCC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCH-HHHHHHhCCCccccC
Confidence 3455555 4566779999999999999999999999998 578999999776544
No 117
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=81.27 E-value=4.7 Score=25.09 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=50.5
Q ss_pred eEEEEecc--CCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee-------CCcccCCCCCcCceeeccCCc
Q psy16998 30 IKLKVLSS--DSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG-------TGLPFGQTHGGNSFYCVNSGT 96 (98)
Q Consensus 30 I~lkV~~q--dg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf-------DG~rI~~~~TP~~L~~~~~~~ 96 (98)
|+|.|... .......|+-++.....|...-..+.|+.+ ..-|+.| -|.-...+.|-.+...-||.|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~-~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ 77 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPP-EYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFV 77 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCG-GGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCH-HHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCE
Confidence 56666543 344457889999999999999999999998 5889986 366677777777777666655
No 118
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=80.42 E-value=2 Score=35.15 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=32.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcc
Q psy16998 42 IHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLP 79 (98)
Q Consensus 42 v~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~r 79 (98)
..|||.+++++..|.+..++..|+++ ..+|||.=-.|
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~-~~~RlW~~~~R 74 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQ-DQIRLWPMQAR 74 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCG-GGEEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCc-ccEEEEEEEcC
Confidence 47999999999999999999999998 68999876554
No 119
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.33 E-value=5.3 Score=32.99 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=39.3
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
+..|.++|.=-|| .+.|.|..+|.-+.|++.-|++.||....-|.+.|
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEE
Confidence 3578999999998 78999999999999999999999995433455544
No 120
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=78.26 E-value=8.5 Score=24.50 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=39.1
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGT 76 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfD 76 (98)
..++|||.-+ ..|..+|.+..++.-|.+.-++|.++.. ..+.+.|=
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~-~~~~LsYk 49 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRL-EHTKLSYR 49 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCG-GGCCEEEC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCc-ceeEEEee
Confidence 3488999877 6999999999999999999999999965 46777663
No 121
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.87 E-value=13 Score=24.35 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=40.6
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGL 78 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~ 78 (98)
..++|-|.=.-..-...||.+..+|..|+-+-|++..+++ ..+-|+=|-+
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp-~~~~Ll~d~~ 58 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDP-LHTLLLKDYQ 58 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCT-TSEEEESCSS
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCCh-hhEEEecCCC
Confidence 5677776555566678999999999999999999999999 4677776643
No 122
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=75.01 E-value=11 Score=24.66 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=50.2
Q ss_pred CcceEEEEeccCCCE---EEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCc
Q psy16998 27 VEYIKLKVLSSDSNE---IHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNS 88 (98)
Q Consensus 27 ~~~I~lkV~~qdg~e---v~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~ 88 (98)
..++++||.=...-. -.+.|--.|||--+.+--|+.+.+.+..+.-..-||.-|++.+|...
T Consensus 8 ~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGn 72 (92)
T 1j0g_A 8 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGN 72 (92)
T ss_dssp SCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHH
T ss_pred CceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccch
Confidence 367778776543322 35667789999999999999999999888888999999999998743
No 123
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.88 E-value=7 Score=25.20 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=44.0
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee-CCcccCCCCCcCcee
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG-TGLPFGQTHGGNSFY 90 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf-DG~rI~~~~TP~~L~ 90 (98)
-+.++|+- .|..+.+.|..+.....|...-+++.|+.+. .-|++| -|.++..+.|-.++.
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~-~QkLi~~~~gkL~D~~tLs~~~ 69 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVS-KMLLKGWKTGDVEDSTVLKSLH 69 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTT-TCCEECCSSSCCCTTSBHHHHC
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChh-HeEEEccCCCCCCCcCCHHHcC
Confidence 45566654 5778889999999999999999999999884 677775 333365444444443
No 124
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=70.72 E-value=18 Score=23.28 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=45.7
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeee--eCCcccCC---CCCcCceeeccC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPM--GTGLPFGQ---THGGNSFYCVNS 94 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFl--fDG~rI~~---~~TP~~L~~~~~ 94 (98)
...+|.|+=.||..+.-+...+.++..|++.-....+... ..+.|. |=-+.+.. +.|=.++..+++
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~-~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTY-GNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSS-CSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCC-CceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 4677888889999999999999999999987665556543 345554 33444542 346666666554
No 125
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=67.59 E-value=17 Score=30.40 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=41.8
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
...|.++|.=-||....|.|..+|.-+.|++.-|++.||.....|.+.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4588999999999999999999999999999999999996434455544
No 126
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=63.96 E-value=26 Score=22.41 Aligned_cols=48 Identities=4% Similarity=-0.104 Sum_probs=38.9
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
+..|+||+.=+ |.-+.|+|.....+..|.+.-+++.++.....+...|
T Consensus 4 ~~~vkvK~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 4 GSQVRVKAYYR-GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp SSCEEEEEESS-SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CCeEEEEEEeC-CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 45688888554 6788999999999999999999999986544566655
No 127
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=61.11 E-value=36 Score=23.11 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=36.0
Q ss_pred cceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCC
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKP 67 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~ 67 (98)
.|=.|+|+=.||....++|..+.+...|+..-|++.|+..
T Consensus 10 k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n 49 (128)
T 2kc2_A 10 HMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 49 (128)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCC
T ss_pred CCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCC
Confidence 4446788889999999999999999999999999999974
No 128
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=60.09 E-value=16 Score=26.45 Aligned_cols=64 Identities=6% Similarity=0.014 Sum_probs=42.4
Q ss_pred ceEEEEeccC--CCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee-CC----cccCC-CCCcCceeec
Q psy16998 29 YIKLKVLSSD--SNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG-TG----LPFGQ-THGGNSFYCV 92 (98)
Q Consensus 29 ~I~lkV~~qd--g~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf-DG----~rI~~-~~TP~~L~~~ 92 (98)
.+.|++.... .+.+.+.+.+...+..|.+.-|+..+++....+|++. ++ ..+.. +.|-.++...
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~ 210 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLY 210 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCC
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCC
Confidence 3444544322 2345688899999999999999999998744799986 32 33443 2455554443
No 129
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=59.76 E-value=34 Score=27.38 Aligned_cols=50 Identities=6% Similarity=0.019 Sum_probs=42.0
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCC-CceeeeeeC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKP-MYKAMPMGT 76 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~-~~s~rFlfD 76 (98)
...|.++|.=.||..+.|.|..+|.-+.|++.-|++.|+.. ...|.+.+.
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 45788999999999999999999999999999999999963 234555543
No 130
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=57.64 E-value=22 Score=21.53 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=37.1
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCC
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTH 84 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~ 84 (98)
+|+|++.+. .+..+.+...+.+..|. ++.|+++ ..+-++.||+-+..++
T Consensus 2 ~v~Vkl~g~--~~~~~ev~~g~Tv~dLL----~~Lgl~~-~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVVGE--ETSEVAVDDDGTYADLV----RAVDLSP-HEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECSSS--SEEEEECSTTCSHHHHH----HTTCCCS-SCCCEECCCCCCCTTS
T ss_pred EEEEEEeCc--cceeEEcCCCCcHHHHH----HHcCCCc-ceEEEEECCEECCHHH
Confidence 467777644 34456788888888776 4679988 5788999999887776
No 131
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.04 E-value=26 Score=23.21 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=46.4
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCC---CCceeeeeeCCcccCCC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENK---PMYKAMPMGTGLPFGQT 83 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~---~~~s~rFlfDG~rI~~~ 83 (98)
...|..+|--.|...+..+++.++.-..|+.+-++|.+.. . --+..-++|.|+--.
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l-~Lv~v~ssGEk~~lq 65 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDL-ALVAITFSGEKHELQ 65 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGE-EEEEECSSCCCCBCC
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccce-EEEEEccCCcEeecC
Confidence 4578899999999999999999999999999999999862 2 356677888887543
No 132
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=53.00 E-value=27 Score=23.66 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=46.4
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCC--------CceeeeeeCCcccCC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKP--------MYKAMPMGTGLPFGQ 82 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~--------~~s~rFlfDG~rI~~ 82 (98)
...|..+|--.|.+.+..+++.++.-..|+.+-++|.+... ---+..-++|.|+--
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vl 70 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLL 70 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEEC
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeec
Confidence 46899999999999999999999999999999999998732 135667778888643
No 133
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=51.86 E-value=13 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=25.3
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHH
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r 62 (98)
...+|+|.|.+.++....|.|. |.=..|+++--..
T Consensus 5 g~k~i~i~v~~~~~~~~~~~v~--t~g~tL~dvLk~~ 39 (101)
T 3u7z_A 5 GEKHITVTVIHGDQTENVFEFD--TDAKYLGEVLESE 39 (101)
T ss_dssp CCEEEEEEEECTTSCEEEEEEE--ECCSBHHHHHHHT
T ss_pred ceeEEEEEEEcCCCceeEEEEc--CCccHHHHHHHHc
Confidence 3579999999999999999998 4444444444333
No 134
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=50.33 E-value=29 Score=24.78 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 40 NEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 40 ~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
..+.+.+.+...+..|.+.-|+..+++....+|++.
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~ 175 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWN 175 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEE
Confidence 446788899999999999999999998744699885
No 135
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=48.19 E-value=16 Score=24.17 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=18.5
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTP 51 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~ 51 (98)
+..++|+| +|.+|.|||..+-+
T Consensus 42 ~~F~~isV---~g~aVTFrV~~N~~ 63 (99)
T 4hti_A 42 SAFADVEV---LGPAVTFKVSANVQ 63 (99)
T ss_dssp GGEEEEEE---ETTEEEEEECCCTT
T ss_pred hheeeeee---cCceEEEEeccCCC
Confidence 45788998 78999999998865
No 136
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=47.41 E-value=37 Score=21.21 Aligned_cols=49 Identities=6% Similarity=-0.100 Sum_probs=38.2
Q ss_pred EEEEeccCCCEEEEEEcC---CCchHHHHHHHHHHhcCCCCceeeeeeCCcc
Q psy16998 31 KLKVLSSDSNEIHFRVKM---TTPMGKLKKSYSERVENKPMYKAMPMGTGLP 79 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~---~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~r 79 (98)
++++.+..|..-.+++.. ..-|.+=...||...+|.....+.|.++|..
T Consensus 41 ~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 41 TVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp EEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEEEEEECSSS
T ss_pred EEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEEEEEEcCCC
Confidence 455566888887777742 3457777899999999999889999998863
No 137
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA endonuclease, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: c.52.2.1
Probab=43.21 E-value=27 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.1
Q ss_pred CCcceEEEEeccCCCEEEEEE
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRV 46 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkI 46 (98)
.+.+|+|-+.++|++-|+++|
T Consensus 101 ~~~ri~LaIv~~DSTIVYY~v 121 (123)
T 2gw6_A 101 LPMSFTLAIVESDSTIVYYKL 121 (123)
T ss_dssp CCCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEE
Confidence 457999999999999999987
No 138
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.14 E-value=65 Score=20.97 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=32.0
Q ss_pred cceEEEEeccC-------CCEEEEEEcCCCchHHHHHHHHHHhcCC
Q psy16998 28 EYIKLKVLSSD-------SNEIHFRVKMTTPMGKLKKSYSERVENK 66 (98)
Q Consensus 28 ~~I~lkV~~qd-------g~ev~FkIK~~T~L~KLm~aYc~r~gl~ 66 (98)
..|.|||.-++ +..+.+.|-.+..+..|.+.-++|.++.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 34888887553 4457899999999999999999999874
No 139
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=38.32 E-value=28 Score=22.63 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=17.8
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTP 51 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~ 51 (98)
+..++|+| +|.+|.|||.++-+
T Consensus 35 ~~Ft~i~V---~g~aVTFrV~~N~~ 56 (91)
T 2qt7_A 35 GSFINISV---VGPALTFRIRHNEQ 56 (91)
T ss_dssp GGEEEEEE---ETTEEEEEECCCTT
T ss_pred cceeeeEe---ecceEEEEeccCcc
Confidence 46778888 78999999987754
No 140
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.58 E-value=78 Score=25.66 Aligned_cols=45 Identities=7% Similarity=0.092 Sum_probs=36.3
Q ss_pred ceEEEEec---cCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeee
Q psy16998 29 YIKLKVLS---SDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPM 74 (98)
Q Consensus 29 ~I~lkV~~---qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFl 74 (98)
.|.|++.. ++.....+.+-+..+...|-++++++.++++ ..+||.
T Consensus 239 rv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP-~~lRf~ 286 (530)
T 2ylm_A 239 RVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDP-MLLQFF 286 (530)
T ss_dssp EEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCG-GGEEEE
T ss_pred ceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCc-hhEEEE
Confidence 45555553 3456688899999999999999999999999 579986
No 141
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=36.50 E-value=33 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCcceEEEEeccCCCEEEEEEcCCCc
Q psy16998 26 NVEYIKLKVLSSDSNEIHFRVKMTTP 51 (98)
Q Consensus 26 ~~~~I~lkV~~qdg~ev~FkIK~~T~ 51 (98)
++....|++.+.....|-||||-+.+
T Consensus 23 ~gg~~~l~L~N~t~~~vAFKVKtT~p 48 (116)
T 1m1s_A 23 TGGNSTHNITSESDSRLAFKVKSSNN 48 (116)
T ss_dssp TCEEEEEEEEECSSSEEEEEEEESCT
T ss_pred CCCEEEEEEECCCCCeEEEEEEecCC
Confidence 34578899999999999999997665
No 142
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=33.89 E-value=17 Score=23.77 Aligned_cols=32 Identities=3% Similarity=-0.012 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 57 KSYSERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 57 ~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
...+++.|+. ++=.|++||+.|.+..++++|.
T Consensus 139 ~~~a~~~gv~--gtPt~vvng~~~~G~~~~~~l~ 170 (175)
T 1z6m_A 139 IAEANAAHIQ--FVPTIIIGEYIFDESVTEEELR 170 (175)
T ss_dssp HHHHHHHTCC--SSCEEEETTEEECTTCCHHHHH
T ss_pred HHHHHHcCCC--CcCeEEECCEEccCCCCHHHHH
Confidence 3567788885 3556999999998888777664
No 143
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=33.18 E-value=29 Score=22.56 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.7
Q ss_pred ceEEEEeccCCCEEEEEEcCCCch
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPM 52 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L 52 (98)
.-.|++.+.....|.||||-+.+-
T Consensus 30 ~~~l~L~N~s~~~vaFKVKTT~p~ 53 (128)
T 1z9l_A 30 TTNLKLQNPSDRKVCFKVKTTAPR 53 (128)
T ss_dssp EEEEEEECCSSSCEEEEEEESCGG
T ss_pred EEEEEEECCCCCeEEEEEECCCCC
Confidence 556888898889999999977663
No 144
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=32.83 E-value=71 Score=21.00 Aligned_cols=66 Identities=5% Similarity=0.004 Sum_probs=41.7
Q ss_pred CcceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHH-hcCCCCceeeee--eCCcccCC-CCCcCceeecc
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER-VENKPMYKAMPM--GTGLPFGQ-THGGNSFYCVN 93 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r-~gl~~~~s~rFl--fDG~rI~~-~~TP~~L~~~~ 93 (98)
....+|+|+=.||..+.-+...+..+..|++.-... .+... ..+.|+ |=.+.+.. +.|=.++..++
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~-~~f~L~t~fPrk~l~d~~~TL~eagL~p 119 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAA-TSFVLMTTFPNKELADENQTLKEANLLN 119 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGT-SCEEEEETTTTEECCSTTCBHHHHTCSS
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCC-CCeEEecCCCCCCCCCCCCcHHHCCCcC
Confidence 345667777789999999999999999998855443 23322 345554 33444542 34555555444
No 145
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=31.62 E-value=1e+02 Score=20.19 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=38.3
Q ss_pred CcceEEEEeccCCCEEEEEEcC--CC---chHHHHHHHHHHhcCCCCceeeeeeCC
Q psy16998 27 VEYIKLKVLSSDSNEIHFRVKM--TT---PMGKLKKSYSERVENKPMYKAMPMGTG 77 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev~FkIK~--~T---~L~KLm~aYc~r~gl~~~~s~rFlfDG 77 (98)
...+.|.+.|.+|.+-.|+.+. +. -|.+=...|+...+|.....+.|..+.
T Consensus 49 ~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 49 VKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp SCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECC
T ss_pred CCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEec
Confidence 3568899999999887777542 21 233447899999999988888888764
No 146
>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30
Probab=31.50 E-value=32 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.0
Q ss_pred CCcceEEEEecc--CCCEEEEEEcC
Q psy16998 26 NVEYIKLKVLSS--DSNEIHFRVKM 48 (98)
Q Consensus 26 ~~~~I~lkV~~q--dg~ev~FkIK~ 48 (98)
.-.-|.|+|+++ +|+.+.|.||-
T Consensus 67 ~~~GI~l~vkG~~~nG~~y~~~LR~ 91 (178)
T 1v0a_A 67 KWLKISFDIKSVDGSANEIRFMIAE 91 (178)
T ss_dssp TCCEEEEEEEEC---CCCEEEEEEE
T ss_pred HCCcEEEEEEcCCCCCCEEEEEEee
Confidence 346899999998 89999999995
No 147
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.15 E-value=32 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCch
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPM 52 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L 52 (98)
.-.|++.+.....|.||||-+.+-
T Consensus 34 ~~~l~L~N~s~~~VaFKVKTT~p~ 57 (147)
T 2cri_A 34 TTNLKLQNPSDRKVCFKVKTTAPR 57 (147)
T ss_dssp CEEEEEECCSSSCEEEEEEESCTT
T ss_pred EEEEEEECCCCCcEEEEEECCCCc
Confidence 456888888889999999966654
No 148
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=30.93 E-value=81 Score=18.29 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=37.2
Q ss_pred ceEEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCC
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTH 84 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~ 84 (98)
.++|+|.++.+++ .+.+...+.+..|.+.. +++. ..+.+..||.-+..+.
T Consensus 4 ~m~i~vNg~~~~~-~~~~~~~~tv~~Ll~~l----~~~~-~~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 4 GMKFTVITDDGKK-ILESGAPRRIKDVLGEL----EIPI-ETVVVKKNGQIVIDEE 53 (70)
T ss_dssp CEEEEEEETTEEE-EEEESSCCBHHHHHHHT----TCCT-TTEEEEETTEECCTTS
T ss_pred eEEEEEeCccCce-eEECCCCCcHHHHHHHh----CCCC-CCEEEEECCEECCCcc
Confidence 3788888876544 45677778888887754 6666 4688999999887765
No 149
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=30.81 E-value=32 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=19.2
Q ss_pred cceEEEEeccCCCEEEEEEcCCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTP 51 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~ 51 (98)
..-.|++.+.....|-||||-+.+
T Consensus 27 ~~~~l~l~N~s~~~vaFKVKTT~p 50 (126)
T 1msp_A 27 HTYHIKITNAGGRRIGWAIKTTNM 50 (126)
T ss_dssp CCEEEEEEECSSSCEEEEEEESCT
T ss_pred eEEEEEEECCCCCeEEEEEEcCCC
Confidence 455688889889999999996554
No 150
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=30.63 E-value=33 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.0
Q ss_pred cceEEEEeccCCCEEEEEEcCCCc
Q psy16998 28 EYIKLKVLSSDSNEIHFRVKMTTP 51 (98)
Q Consensus 28 ~~I~lkV~~qdg~ev~FkIK~~T~ 51 (98)
..-+|++.+.....|-||||-+.+
T Consensus 17 ~~~~l~L~N~t~~~vaFKVKtT~p 40 (109)
T 1row_A 17 VSSTHKLVNGGAEKIVFKIKSSNN 40 (109)
T ss_dssp EEEEEEEEECSSSCEEEEEEESCS
T ss_pred CeEEEEEEcCCCCeEEEEEEeCCC
Confidence 357788889989999999997766
No 151
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=29.74 E-value=21 Score=23.63 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 58 SYSERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 58 aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
..+++.|+. ++=.|++||+.|.+..++++|.
T Consensus 140 ~~a~~~gv~--GtPt~vvnG~~~~G~~~~~~l~ 170 (186)
T 3bci_A 140 KIAKDNHIK--TTPTAFINGEKVEDPYDYESYE 170 (186)
T ss_dssp HHHHHTTCC--SSSEEEETTEECSCTTCHHHHH
T ss_pred HHHHHcCCC--CCCeEEECCEEcCCCCCHHHHH
Confidence 356777874 4667888999998877777664
No 152
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=29.53 E-value=36 Score=23.17 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=19.7
Q ss_pred ceEEEEeccCCCEEEEEEcCCCch
Q psy16998 29 YIKLKVLSSDSNEIHFRVKMTTPM 52 (98)
Q Consensus 29 ~I~lkV~~qdg~ev~FkIK~~T~L 52 (98)
.-.|++.+.....|.||||-+.+-
T Consensus 38 ~~~l~L~N~s~~~VaFKVKTT~p~ 61 (152)
T 1wic_A 38 KTLIVLTNVTKNIVAFKVRTTAPE 61 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCTT
T ss_pred EEEEEEEcCCCCeEEEEEECCCCC
Confidence 457888898889999999977664
No 153
>1m11_3 Coat protein VP3; decay-accelerating factor, SCR, icosahedral virus, virus/receptor complex; 16.00A {Human echovirus 7} SCOP: i.6.1.1
Probab=29.17 E-value=68 Score=23.50 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=32.7
Q ss_pred eEEEEeccCCCEE-EEEEcC-------CCchHHHHHHHHHHhcCCCCceeeeeeCCccc
Q psy16998 30 IKLKVLSSDSNEI-HFRVKM-------TTPMGKLKKSYSERVENKPMYKAMPMGTGLPF 80 (98)
Q Consensus 30 I~lkV~~qdg~ev-~FkIK~-------~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI 80 (98)
|.+......|..| .|.+-+ +|.|.-|...|+.=.| +. .+||+|.|...
T Consensus 70 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~T~L~~ls~~f~~WrG-sl--~~~f~~~gs~~ 125 (238)
T 1m11_3 70 IEVNTGNHQGEKIFAFQMQPGLESVFKRTLMGEILNYYAHWSG-SI--KLTFTFCGSAM 125 (238)
T ss_pred EEeecCCCCCCEEEEEEccccccccccccHHHHHHHhhhheee-eE--EEEEEEecCCC
Confidence 3344434445554 455553 6789999999999888 44 69999998754
No 154
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=28.44 E-value=1e+02 Score=23.36 Aligned_cols=44 Identities=9% Similarity=-0.084 Sum_probs=34.3
Q ss_pred EEEeccCCC----EEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeee
Q psy16998 32 LKVLSSDSN----EIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMG 75 (98)
Q Consensus 32 lkV~~qdg~----ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlf 75 (98)
++|.=.+|. ...|+|..+|.-+.|++.-|++.|+.....|-+.+
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 455556776 89999999999999999999999995433344443
No 155
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=27.81 E-value=26 Score=23.38 Aligned_cols=32 Identities=9% Similarity=-0.123 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCceeeeee-CCcccCCCCCcCcee
Q psy16998 57 KSYSERVENKPMYKAMPMG-TGLPFGQTHGGNSFY 90 (98)
Q Consensus 57 ~aYc~r~gl~~~~s~rFlf-DG~rI~~~~TP~~L~ 90 (98)
...+++.|+. ++=.|++ ||++|.+-..+++|.
T Consensus 99 ~~la~~~gI~--gtPt~vi~nG~~i~G~~~~~~l~ 131 (147)
T 3gv1_A 99 TSLGEQFGFN--GTPTLVFPNGRTQSGYSPMPQLE 131 (147)
T ss_dssp HHHHHHTTCC--SSCEEECTTSCEEESCCCTTHHH
T ss_pred HHHHHHhCCC--ccCEEEEECCEEeeCCCCHHHHH
Confidence 3457888885 4566777 899999998888875
No 156
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=25.72 E-value=85 Score=20.50 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=35.8
Q ss_pred ccCCCEEEEEEcC-------CCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcCce
Q psy16998 36 SSDSNEIHFRVKM-------TTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGNSF 89 (98)
Q Consensus 36 ~qdg~ev~FkIK~-------~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L 89 (98)
.++|+.+.+.+.. .....+|-.|-++.+|..+ .+.+-.+ . .....||.++
T Consensus 49 ~~~~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G~~v--~L~i~~g-~-~~~~~TPa~~ 105 (128)
T 2aya_A 49 EESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTV--ELTIVED-D-NPAVRTPLEW 105 (128)
T ss_dssp EECSSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCC--EEEEEEC-C-CTTSCCHHHH
T ss_pred heeCCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHCCCE--EEEEEEC-C-CCCCCCHHHH
Confidence 3478888898875 3467889999999999875 5777653 2 2234588764
No 157
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=25.30 E-value=1.3e+02 Score=20.04 Aligned_cols=29 Identities=0% Similarity=-0.112 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCchHHHHHHHHHHhcCCC
Q psy16998 39 SNEIHFRVKMTTPMGKLKKSYSERVENKP 67 (98)
Q Consensus 39 g~ev~FkIK~~T~L~KLm~aYc~r~gl~~ 67 (98)
|+.+.+++.+...|..=...+|.+.++..
T Consensus 12 g~~~~~rL~~Gedl~~~l~~~~~~~~i~~ 40 (147)
T 3hwu_A 12 PTGYLMVLRHGDNVLQNLEQLARDEHIPS 40 (147)
T ss_dssp TTEEEEEEETTCBHHHHHHHHHHHTTCSE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHcCCCE
Confidence 88899999999999999999999999964
No 158
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=24.74 E-value=1.3e+02 Score=18.81 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=40.4
Q ss_pred cceEEEEeccCC----CEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCccc--CCCCCcCce
Q psy16998 28 EYIKLKVLSSDS----NEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPF--GQTHGGNSF 89 (98)
Q Consensus 28 ~~I~lkV~~qdg----~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI--~~~~TP~~L 89 (98)
.+|.|+.+.-.. ..-.|+|..+..+..++.--.+|..+++..+ -|+|=++.+ ..++|=.+|
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~a-lFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQ-LFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSC-CEEEETTTBCCCTTCBHHHH
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCe-EEEEECCccCCChhhHHHHH
Confidence 456666655322 2338999999999999999999999988544 455544443 334444443
No 159
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=24.47 E-value=1.1e+02 Score=17.69 Aligned_cols=54 Identities=6% Similarity=0.035 Sum_probs=34.9
Q ss_pred eEEEEeccCC-CEEEEEEcCCCchHHHHHHHHHHhcCCC-CceeeeeeCCcccCCCCCc
Q psy16998 30 IKLKVLSSDS-NEIHFRVKMTTPMGKLKKSYSERVENKP-MYKAMPMGTGLPFGQTHGG 86 (98)
Q Consensus 30 I~lkV~~qdg-~ev~FkIK~~T~L~KLm~aYc~r~gl~~-~~s~rFlfDG~rI~~~~TP 86 (98)
|+|+.-..-. .++ .+ ..+.+..|.+.-+.+.++.. -..+++..||+.|...+||
T Consensus 3 v~V~~fa~l~~~~~--e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~ 58 (74)
T 3rpf_C 3 VEVRFFGPIKEENF--FI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP 58 (74)
T ss_dssp EEEEECTTCCCCCE--EE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC
T ss_pred EEEEEEeecceeEE--ee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC
Confidence 4455544322 333 34 56789999999887755431 0358999999997766654
No 160
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=22.95 E-value=1.5e+02 Score=19.53 Aligned_cols=51 Identities=8% Similarity=-0.017 Sum_probs=41.8
Q ss_pred CcceEEEEec-cCCCEEEEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCc
Q psy16998 27 VEYIKLKVLS-SDSNEIHFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGL 78 (98)
Q Consensus 27 ~~~I~lkV~~-qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~ 78 (98)
...|.+++.- +.+..|..+.|++-+|..++..--.++|+.. ..+....-|.
T Consensus 14 E~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l-~qv~v~~~g~ 65 (104)
T 1wfy_A 14 ENRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSL-DQVVLHRPGE 65 (104)
T ss_dssp CSCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCT-TTCCBCCTTC
T ss_pred EeeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCCh-hhEEEEecCC
Confidence 3688899966 8999999999999999999999999999976 3555544333
No 161
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=22.64 E-value=35 Score=23.46 Aligned_cols=31 Identities=0% Similarity=-0.102 Sum_probs=23.6
Q ss_pred HHHHHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 58 SYSERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 58 aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
..+++.|+. ++=.|++||+.|.+..++++|.
T Consensus 154 ~~a~~~gV~--gtPtfvvnG~~~~G~~~~e~l~ 184 (202)
T 3gha_A 154 DLNQKMNIQ--ATPTIYVNDKVIKNFADYDEIK 184 (202)
T ss_dssp HHHHHTTCC--SSCEEEETTEECSCTTCHHHHH
T ss_pred HHHHHcCCC--cCCEEEECCEEecCCCCHHHHH
Confidence 456677774 5778999999998877777664
No 162
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.63 E-value=90 Score=17.27 Aligned_cols=25 Identities=4% Similarity=-0.326 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCCceeeeeeCCcccC
Q psy16998 57 KSYSERVENKPMYKAMPMGTGLPFG 81 (98)
Q Consensus 57 ~aYc~r~gl~~~~s~rFlfDG~rI~ 81 (98)
+...++.|+.....+.|..++.+|-
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~~~iv 42 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDESEGV 42 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECSSSCC
T ss_pred HHHHHHcCcCCCCEEEEEEECCEEE
Confidence 5677888998877888888876653
No 163
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=22.17 E-value=61 Score=17.37 Aligned_cols=27 Identities=7% Similarity=-0.037 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHhcCCC
Q psy16998 41 EIHFRVKMTTPMGKLKKSYSERVENKP 67 (98)
Q Consensus 41 ev~FkIK~~T~L~KLm~aYc~r~gl~~ 67 (98)
.+.+.|+-+..+..-++.||.+.|++.
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~ 35 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTL 35 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCH
Confidence 345566667889999999999999865
No 164
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=22.12 E-value=39 Score=23.30 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=23.0
Q ss_pred HHHHHhcCCCCceeeeee-CCcccCCCCCcCcee
Q psy16998 58 SYSERVENKPMYKAMPMG-TGLPFGQTHGGNSFY 90 (98)
Q Consensus 58 aYc~r~gl~~~~s~rFlf-DG~rI~~~~TP~~L~ 90 (98)
..+++.|+. ++=.|++ ||+++.+..++++|+
T Consensus 172 ~l~~~~gV~--gTPt~vi~nG~~~~G~~~~~~l~ 203 (211)
T 1t3b_A 172 ELGIQFGVR--GTPSIVTSTGELIGGYLKPADLL 203 (211)
T ss_dssp HHHHHHTCC--SSCEEECTTSCCCCSCCCHHHHH
T ss_pred HHHHHcCCC--cCCEEEEeCCEEecCCCCHHHHH
Confidence 346778885 3556666 999999888887775
No 165
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=21.67 E-value=1.8e+02 Score=19.02 Aligned_cols=44 Identities=7% Similarity=-0.049 Sum_probs=30.9
Q ss_pred CcceEEEEeccCCCEE-EEEEcCCCchHHHHHHHHHHhcCCCCceeeeeeCCcccCCCCCcC
Q psy16998 27 VEYIKLKVLSSDSNEI-HFRVKMTTPMGKLKKSYSERVENKPMYKAMPMGTGLPFGQTHGGN 87 (98)
Q Consensus 27 ~~~I~lkV~~qdg~ev-~FkIK~~T~L~KLm~aYc~r~gl~~~~s~rFlfDG~rI~~~~TP~ 87 (98)
...++|.|.+..|+.| .+.+.. +.. ...+|.+||..-.+..=|+
T Consensus 36 a~~v~v~I~d~~G~~V~t~~~g~----------------~~a-G~~~f~WDG~d~~G~~~~~ 80 (138)
T 3osv_A 36 SSNVWVNVYDDKGTVVNRINLGQ----------------QAA-GSVSFMWDGKDSSGNIMPP 80 (138)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEE----------------ECS-EEEEEEECSBCTTSCBCCS
T ss_pred CcEEEEEEEcCCCCEEEEEEcCC----------------cCC-ceEEEEECCcCCCCCCCCC
Confidence 4579999999999887 344421 343 5789999998766665554
No 166
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=21.06 E-value=1.5e+02 Score=18.33 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=24.5
Q ss_pred EEEEeccCCCEEEEEEcCCCchHHHHHHHHHHhcCC
Q psy16998 31 KLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVENK 66 (98)
Q Consensus 31 ~lkV~~qdg~ev~FkIK~~T~L~KLm~aYc~r~gl~ 66 (98)
+|.+++.+|....|.+.....|.... .+.|+.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~----~~~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEAL----RDAGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHH----HHTTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHH----HHcCCC
Confidence 57888899999999999887766543 456665
No 167
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=20.98 E-value=37 Score=21.94 Aligned_cols=30 Identities=0% Similarity=-0.185 Sum_probs=22.4
Q ss_pred HHHHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 59 YSERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 59 Yc~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
.+++.|+. ++=.|++||+.+.+..+++.|+
T Consensus 136 ~a~~~gv~--gtPt~~i~g~~~~G~~~~~~l~ 165 (175)
T 3gyk_A 136 LAQKLGFN--GTPSFVVEDALVPGFVEQSQLQ 165 (175)
T ss_dssp HHHHHTCC--SSSEEEETTEEECSCCCHHHHH
T ss_pred HHHHcCCc--cCCEEEECCEEeeCCCCHHHHH
Confidence 55677774 3557888999999888877664
No 168
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=20.28 E-value=41 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=22.5
Q ss_pred HHhcCCCCceeeeeeCCcccCCCCCcCcee
Q psy16998 61 ERVENKPMYKAMPMGTGLPFGQTHGGNSFY 90 (98)
Q Consensus 61 ~r~gl~~~~s~rFlfDG~rI~~~~TP~~L~ 90 (98)
++.|+. ++=.|++||+.|.+..+++.|.
T Consensus 162 ~~~GV~--GtPtfvvng~~~~G~~~~e~l~ 189 (205)
T 3gmf_A 162 NQYNVS--GTPSFMIDGILLAGTHDWASLR 189 (205)
T ss_dssp HHHCCC--SSSEEEETTEECTTCCSHHHHH
T ss_pred HHcCCc--cCCEEEECCEEEeCCCCHHHHH
Confidence 677885 5778999999999888877764
Done!