RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16998
         (98 letters)



>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 72

 Score = 51.3 bits (123), Expect = 5e-11
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 29 YIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERVE 64
          +I LKV   D + + F++K  TP+ KL K+Y ER  
Sbjct: 1  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG 36


>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 77

 Score = 50.5 bits (121), Expect = 2e-10
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSERV 63
          EYIKLKV+  DS+EIHF+VKMTT + KLK+SY +R 
Sbjct: 1  EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ 36


>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
          (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
          Length = 79

 Score = 46.0 bits (109), Expect = 9e-09
 Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 28 EYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYSER 62
           +I LKV S  S+EI F++K TTP+ +L +++++R
Sbjct: 3  THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR 36


>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a
          (PBP2A), N-terminal domain {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 112

 Score = 25.1 bits (55), Expect = 1.2
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 26 NVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKKSYS 60
          N++  K+K +S +   +  + K+ T  G + ++  
Sbjct: 53 NIQDRKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQ 87


>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 116

 Score = 23.8 bits (51), Expect = 3.6
 Identities = 6/40 (15%), Positives = 11/40 (27%)

Query: 18 SSSADGGDNVEYIKLKVLSSDSNEIHFRVKMTTPMGKLKK 57
          SS        + I L+++        F          + K
Sbjct: 5  SSGMSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAK 44


>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 99

 Score = 22.8 bits (49), Expect = 6.3
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 30 IKLKVLSSDSNEIHFRVK 47
            L+V+S + N I   + 
Sbjct: 3  SSLRVISKEKNSITVEMI 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.125    0.353 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,934
Number of extensions: 12333
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 6
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)