BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16999
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 95
+ ++ DLAG+ER + GDRLRE + IN SL L + L G K+ IPF
Sbjct: 294 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHAL----GQPDSTKRHIPF 349
Query: 96 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
R+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 350 RNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETL 385
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
E I + ++ DLAG+ERQ + G+RL+EA IN SL L + L +
Sbjct: 245 GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG------ 298
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
K IP+RDSKLT++ Q SL G + TV M+ NV + EET+
Sbjct: 299 KSTHIPYRDSKLTRLLQDSLGGNAKTV-MVANVGPASYNVEETL 341
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 95
+ ++ DLAG+ER + GDRLRE + IN SL L + L G K+ IPF
Sbjct: 249 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPF 304
Query: 96 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
R+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 305 RNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLN 341
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 37 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
+ ++ DLAG+ER + GDRLRE + IN SL L + L G K+ IPFR
Sbjct: 238 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFR 293
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 294 NSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLN 329
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 37 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
+ ++ DLAG+ER + GDRLRE + IN SL L + L G K+ IPFR
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFR 294
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 295 NSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLN 330
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
S L ++ DLAG+ER ++ G RLREA+ IN SL L LR G
Sbjct: 221 STGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG---- 276
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRS 144
+PFR+SKLT + Q SLSG S T+ M+V V+ ET+ Y +K + VRS
Sbjct: 277 ---HVPFRNSKLTYLLQDSLSGDSKTL-MVVQVSPVEKNTSETL-YSLKFAERVRS 327
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 37 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
+ ++ DLAG+ R + GDRLRE + IN SL L + L G K+ IPFR
Sbjct: 239 TLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHAL----GQPDSTKRHIPFR 294
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 295 NSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLN 330
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 95
+ ++ DLAG+ER + GDRLRE + I SL L + L G K+ IPF
Sbjct: 238 GTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHAL----GQPDSTKRHIPF 293
Query: 96 RDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
R+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 294 RNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLN 330
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 38 FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRD 97
++ DLAG+ER + G+RLRE ++IN SL L + L +G +K+ IPFR+
Sbjct: 264 LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG----QKRHIPFRN 319
Query: 98 SKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
SKLT + Q SL G S T+ M VN++ + + ET+
Sbjct: 320 SKLTYLLQYSLIGSSKTL-MFVNISPAALHLNETI 353
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 38 FDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRD 97
++ DLAG+ER + +G+RLRE + IN SL L L + K+ IPFR+
Sbjct: 243 LNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA----GKRYIPFRN 298
Query: 98 SKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
SKLT + Q SL G S T+ M VN+ P + ET+
Sbjct: 299 SKLTYLLQYSLVGDSKTL-MFVNIPPDPNHISETLN 333
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 22 LFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRE 81
L+ V G+ V + DLAG+ER + +GDRL+E IN SL L + L +
Sbjct: 231 LYDVKSGTSGEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALAD 289
Query: 82 NNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ K +K K +P+RDS LT + + SL G S T M+ V+ + +ET+
Sbjct: 290 QSAGK-NKNKFVPYRDSVLTWLLKDSLGGNSKTA-MVATVSPAADNYDETL 338
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 27 PGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 86
P +L+V S F DLAG+ER + ++G+RL+E+ INSSL L + L G
Sbjct: 235 PAPGQLLV-SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL----GDP 289
Query: 87 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ IP+RDSK+T+I + SL G + TV MI V+ S + +ET+
Sbjct: 290 QRRGSHIPYRDSKITRILKDSLGGNAKTV-MIACVSPSSSDFDETL 334
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 40 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSK 99
+ DLAG+E+ + SG L EA+ IN SL L N L + K +P+RDSK
Sbjct: 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KSSHVPYRDSK 286
Query: 100 LTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
LT+I Q SL G S T +I+N + S ET+
Sbjct: 287 LTRILQESLGGNSRTT-LIINCSPSSYNDAETL 318
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 31 ELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKK 90
+ I DLAG+ER K++ ++G++L+EA++IN SL L + L N
Sbjct: 222 QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN------- 274
Query: 91 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
+ IP+R+ KLT + SL G + T+ M VN++ + + +ET
Sbjct: 275 QHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDET 314
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 41 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKL 100
DLAG+ER K++ ++G++L+EA++IN SL L L N + IP+R+ KL
Sbjct: 240 VDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN-------QHIPYRNHKL 292
Query: 101 TQIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
T + SL G + T+ M VNV+ + + +ET
Sbjct: 293 TMLMSDSLGGNAKTL-MFVNVSPAESNLDET 322
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
++E+I + ++ DLAG+ERQ + +G+ L E IN SL L + L E
Sbjct: 228 NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG------ 281
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
IP+RDSKLT++ Q SL G S T+ M N++ + +ET+
Sbjct: 282 -ATHIPYRDSKLTRLLQDSLGGNSKTL-MCANISPASTNYDETM 323
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 59.3 bits (142), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 37 SFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
+ ++ DLAG+ER + GDRL+E + IN SL L + L +G +P+R
Sbjct: 611 TLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDG------SHVPYR 664
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+SKLT + + SL G S T+ M VN++ ET+
Sbjct: 665 NSKLTYLLKHSLGGNSKTL-MFVNISPLTKDLNETI 699
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 304
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 347
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
SEE + S ++ DLAG+ER ++ + G L+EA IN SL L + L +
Sbjct: 251 SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ------ 304
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
K+ IPFR KLT + SL G + V ++ N+ A EET+
Sbjct: 305 KRDHIPFRQCKLTHALKDSLGGNCNMV-LVTNIYGEAAQLEETL 347
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 237 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 289
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 290 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 332
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 304
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 347
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 295
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 296 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 338
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 254 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 306
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 307 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 349
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 304
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 347
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 304
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 347
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 251 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 303
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 304 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 346
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
EEL+ + ++ DLAG+E R+ R REA IN SL L R L E
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------- 304
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ +P+R+SKLT+I Q SL G + T +I ++ + EET+
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRT-SIIATISPASLNLEETL 347
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 8/82 (9%)
Query: 40 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSK 99
+ DLAG+E +R G RL+E+ IN+SL VL + + L N GL +P+RDSK
Sbjct: 251 LIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL--NQGLPR-----VPYRDSK 303
Query: 100 LTQIFQRSLSGLSSTVKMIVNV 121
LT++ Q SL G + ++ +I N+
Sbjct: 304 LTRLLQDSLGGSAHSI-LIANI 324
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 40 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSK 99
+ DLAG+E+ + G L EA+ IN SL L + L + N K IP+RDSK
Sbjct: 236 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN------KTHIPYRDSK 289
Query: 100 LTQIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
LT+I Q SL G + T +I SPA E+
Sbjct: 290 LTRILQESLGGNARTTIVIC---CSPASFNES 318
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 27 PGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 86
P +L+V S F DLAG+ER + ++G+ +E+ INSSL L + L G
Sbjct: 235 PAPGQLLV-SKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISAL----GDP 289
Query: 87 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ IP+RDSK+T+I + SL G + TV MI V+ S + +ET+
Sbjct: 290 QRRGSNIPYRDSKITRILKDSLGGNAKTV-MIACVSPSSSDFDETL 334
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 29 SEELIVMSSFDICDLAGAER-QKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 87
E+++ + ++ DLAG+E K + G R+RE IN SL L R L
Sbjct: 253 GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL-------V 305
Query: 88 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
D+ +P+R+SKLT++ Q SL G + T +I ++ EET+
Sbjct: 306 DRAPHVPYRESKLTRLLQESLGGRTKT-SIIATISPGHKDIEETL 349
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 94
++ + DLAG+ER + G R E IN SL L N L ++ K + IP
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADS----KRKNQHIP 306
Query: 95 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
+R+SKLT++ + SL G T+ MI V+ S + ++T
Sbjct: 307 YRNSKLTRLLKDSLGGNCQTI-MIAAVSPSSVFYDDT 342
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 14/101 (13%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENNG 84
S L + + DLAG+ER G +RLRE + INSSL L L
Sbjct: 265 SRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL----- 319
Query: 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 125
++K+ +P+R+SKLT + Q SL G + KM++ VN SP
Sbjct: 320 --SNKESHVPYRNSKLTYLLQNSLGG---SAKMLMFVNISP 355
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 18/108 (16%)
Query: 40 ICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL--------RENNGLKADKKK 91
+ DLAG+ER K +G RLRE IN SL L R L R ++ +K+ + +
Sbjct: 297 LVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGR 356
Query: 92 -------LIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
++P+RDS LT + + SL G S T MI + SP +ET+
Sbjct: 357 TPGPANSVVPYRDSVLTWLLKDSLGGNSKTA-MIACI--SPTDYDETL 401
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 30 EELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADK 89
E + +S ++ DLAG+ER + +G RL+E IN SL +L + L +
Sbjct: 222 EGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD-----GQV 276
Query: 90 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
I +RDSKLT+I Q SL G + T ++I + +P +ET+
Sbjct: 277 GGFINYRDSKLTRILQNSLGGNAKT-RIICTI--TPVSFDETL 316
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 101
DLAG+E+ + G L EA+ IN SL L + L A+ +P+RDSK+T
Sbjct: 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMT 283
Query: 102 QIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
+I Q SL G T +I SP+ E+
Sbjct: 284 RILQDSLGGNCRTTIVIC---CSPSSYNES 310
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 101
DLAG+E+ + G L EA+ IN SL L + L A+ +P+RDSK+T
Sbjct: 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMT 283
Query: 102 QIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
+I Q SL G T +I SP+ E+
Sbjct: 284 RILQDSLGGNCRTTIVIC---CSPSSYNES 310
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 101
DLAG+E+ + G L EA+ IN SL L + L A+ +P+RDSK+T
Sbjct: 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AEGSTYVPYRDSKMT 283
Query: 102 QIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
+I Q SL G T +I SP+ E+
Sbjct: 284 RILQDSLGGNCRTTIVIC---CSPSSYNES 310
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 30/125 (24%)
Query: 29 SEELIVMSSFDICDLAGAERQKRA--HTSG----------------------DRLREART 64
++ I + ++ DLAG+ERQ +A +T+G +R +EA
Sbjct: 245 GQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASK 304
Query: 65 INSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNAS 124
IN SL L L N + IP+RDSKLT++ Q SL G + T+ + AS
Sbjct: 305 INLSLSALGNVIAALAGN------RSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPAS 358
Query: 125 PAYAE 129
+Y E
Sbjct: 359 HSYDE 363
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 38 FDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
F + DLAG ER ++ + R E IN SL L C L +N K PFR
Sbjct: 282 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFR 334
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVN---ASPAYAEETVQY--RVK 137
+SKLTQ+ + S G +S MI ++ +S Y T++Y RVK
Sbjct: 335 ESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADK 89
+S + DLAG+ER G RL+E IN SL L + + L E + K K
Sbjct: 257 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 316
Query: 90 KKLIPFRDSKLTQIFQRSLSGLSSTV 115
IP+RDS LT + + +L G S T
Sbjct: 317 TDFIPYRDSVLTWLLRENLGGNSRTA 342
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADK 89
+S + DLAG+ER G RL+E IN SL L + + L E + K K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 90 KKLIPFRDSKLTQIFQRSLSGLSSTV 115
IP+RDS LT + + +L G S T
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTA 326
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADK 89
+S + DLAG+ER G RL+E IN SL L + + L E + K K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 90 KKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
IP+RDS LT + + +L G S T M+ ++ + +ET+
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTA-MVAALSPADINYDETL 342
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG-----LKADK 89
+S + DLAG+ER G RL+E IN SL L + + L E + K K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 90 KKLIPFRDSKLTQIFQRSLSGLSSTV 115
IP+RDS LT + + +L G S T
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTA 326
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 38 FDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
F + DLAG ER ++ + R E IN SL L C L +N K PFR
Sbjct: 230 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFR 282
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVN---ASPAYAEETVQY--RVK 137
+SKLTQ+ + S G +S MI ++ +S Y T++Y RVK
Sbjct: 283 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIP 94
F + DLAG ER ++ + R E IN SL L C L N K P
Sbjct: 318 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN-------KPHTP 370
Query: 95 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
FR SKLTQ+ + S G +S MI ++ A E T+
Sbjct: 371 FRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTL 408
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 38 FDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFR 96
F + DLAG ER ++ + R E IN SL L C L +N K PFR
Sbjct: 302 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-------KAHTPFR 354
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVN---ASPAYAEETVQY--RVK 137
+SKLTQ+ + S G +S MI ++ +S Y T++Y RVK
Sbjct: 355 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 33 IVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 92
I + S ++ DLAG+E K + R+ E + IN SL L L + K+
Sbjct: 280 ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-------KQDH 328
Query: 93 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 329 IPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVK 368
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 33 IVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 92
I + S ++ DLAG+E K + R+ E + IN SL L L + K+
Sbjct: 277 ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-------KQDH 325
Query: 93 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 326 IPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVK 365
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 33 IVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 92
I + S ++ DLAG+E K + R+ E + IN SL L L + K+
Sbjct: 283 ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-------KQDH 331
Query: 93 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 332 IPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVK 371
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 33 IVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 92
I + S ++ DLAG+E K + R+ E + IN SL L L + K+
Sbjct: 291 ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-------KQDH 339
Query: 93 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 340 IPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVK 379
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 33 IVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 92
I + S ++ DLAG+E K + R+ E + I SL L L + K+
Sbjct: 280 ISVGSINLVDLAGSESPK----TSTRMTETKNIKRSLSELTNVILALLQ-------KQDH 328
Query: 93 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 329 IPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVK 368
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 42 DLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKL 100
DLAG+ER + + + + IN SL L C + + K IPFRDS+L
Sbjct: 236 DLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD-------KNHIPFRDSEL 288
Query: 101 TQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
T++ + G S ++ MI N++ + + E+T+
Sbjct: 289 TKVLRDIFVGKSKSI-MIANISPTISCCEQTLN 320
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 62 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 121
A+ IN SL L + L E K +P+RDSK+T+I Q SL G T +I
Sbjct: 1 AKNINKSLSALGNVISALAEGT------KTHVPYRDSKMTRILQDSLDGNCRTTIVIC-- 52
Query: 122 NASPAYAEE 130
SP+ E
Sbjct: 53 -CSPSVFNE 60
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 95
S +I DLAG+E +R G +E IN L + + + A +IP+
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPY 287
Query: 96 RDSKLTQIFQRSLSGLS 112
RDS LT + Q SL+ S
Sbjct: 288 RDSVLTTVLQASLTAQS 304
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF 95
S +I DLAG+E +R G +E IN L + + + A +IP+
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPY 287
Query: 96 RDSKLTQIFQRSLSGLS 112
RDS LT + Q SL+ S
Sbjct: 288 RDSVLTTVLQASLTAQS 304
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 66 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 125
N SL L + L E K +P+RDSK+T+I Q SL G T +I SP
Sbjct: 1 NKSLSALGNVISALAE------GTKTHVPYRDSKMTRILQDSLGGNCRTTIVIC---CSP 51
Query: 126 AYAEE 130
+ E
Sbjct: 52 SVFNE 56
>pdb|2GBW|B Chain B, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|D Chain D, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|F Chain F, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|B Chain B, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|D Chain D, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|F Chain F, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 174
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 60 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQ 102
R R ++H L R + R+ NG K ++KLI D+++TQ
Sbjct: 126 RNRRQTEVTVHTLGREDKLRRDGNGFKVFRRKLI--LDARVTQ 166
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 103 IFQRSLSGLSSTVKMIVNVNASPA 126
+F R S +S T MI ++N +PA
Sbjct: 124 VFHRMSSNISETTAMITDINTAPA 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,876,832
Number of Sequences: 62578
Number of extensions: 128139
Number of successful extensions: 452
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 59
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)