Query psy16999
Match_columns 154
No_of_seqs 117 out of 1036
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 19:09:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 7.1E-43 1.5E-47 299.8 11.5 138 6-153 205-342 (574)
2 KOG0245|consensus 100.0 6.6E-42 1.4E-46 303.2 10.5 144 6-153 210-354 (1221)
3 KOG0243|consensus 100.0 1.6E-41 3.4E-46 303.4 11.8 135 6-149 260-394 (1041)
4 cd01373 KISc_KLP2_like Kinesin 100.0 5.1E-40 1.1E-44 270.4 15.5 135 5-145 203-337 (337)
5 cd01370 KISc_KIP3_like Kinesin 100.0 2.4E-39 5.1E-44 266.6 15.5 135 5-145 204-338 (338)
6 cd01364 KISc_BimC_Eg5 Kinesin 100.0 6.8E-39 1.5E-43 264.9 15.9 138 5-153 212-349 (352)
7 PLN03188 kinesin-12 family pro 100.0 5E-39 1.1E-43 290.5 15.3 142 5-152 297-439 (1320)
8 cd01368 KISc_KIF23_like Kinesi 100.0 9.9E-39 2.1E-43 263.6 15.1 136 5-143 205-345 (345)
9 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.4E-38 1.2E-42 260.0 16.4 145 5-153 209-355 (356)
10 cd01371 KISc_KIF3 Kinesin moto 100.0 7.2E-38 1.6E-42 257.2 16.0 134 4-145 200-333 (333)
11 KOG0240|consensus 100.0 2.3E-38 5E-43 268.2 9.0 130 6-146 203-332 (607)
12 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.9E-37 8.4E-42 252.0 15.8 131 4-145 195-325 (325)
13 cd01372 KISc_KIF4 Kinesin moto 100.0 4.2E-37 9E-42 253.1 16.0 136 5-146 199-341 (341)
14 cd01376 KISc_KID_like Kinesin 100.0 3.5E-37 7.6E-42 251.9 14.5 125 5-143 195-319 (319)
15 cd01375 KISc_KIF9_like Kinesin 100.0 5.7E-37 1.2E-41 252.1 15.2 130 5-143 205-334 (334)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 5.6E-37 1.2E-41 250.7 14.9 133 5-145 189-321 (321)
17 cd01367 KISc_KIF2_like Kinesin 100.0 1.1E-36 2.4E-41 249.3 14.1 124 5-143 198-322 (322)
18 cd01366 KISc_C_terminal Kinesi 100.0 1.9E-36 4E-41 248.2 15.4 132 4-147 197-328 (329)
19 KOG0242|consensus 100.0 9.2E-38 2E-42 275.1 7.4 133 6-149 203-335 (675)
20 KOG0241|consensus 100.0 1.2E-36 2.6E-41 268.1 12.0 143 6-153 214-357 (1714)
21 PF00225 Kinesin: Kinesin moto 100.0 8.1E-36 1.8E-40 244.5 12.6 134 5-145 200-335 (335)
22 KOG0247|consensus 100.0 6.8E-36 1.5E-40 258.8 11.3 141 5-150 301-441 (809)
23 smart00129 KISc Kinesin motor, 100.0 7.4E-35 1.6E-39 239.0 15.4 139 4-152 195-333 (335)
24 KOG0246|consensus 100.0 2.9E-35 6.4E-40 249.4 12.7 132 4-150 413-546 (676)
25 cd00106 KISc Kinesin motor dom 100.0 9.1E-34 2E-38 231.7 15.6 132 4-143 197-328 (328)
26 cd01363 Motor_domain Myosin an 100.0 5E-34 1.1E-38 217.2 12.8 111 5-123 76-186 (186)
27 KOG0239|consensus 100.0 1.4E-34 3.1E-39 254.4 9.4 133 4-148 511-643 (670)
28 KOG0244|consensus 100.0 1.1E-34 2.4E-39 256.5 -1.3 134 6-148 187-320 (913)
29 COG5059 KIP1 Kinesin-like prot 100.0 5E-30 1.1E-34 223.3 13.1 132 7-148 208-339 (568)
30 COG5059 KIP1 Kinesin-like prot 85.4 0.11 2.4E-06 46.1 -2.3 67 7-80 500-566 (568)
31 PF12726 SEN1_N: SEN1 N termin 51.0 20 0.00043 32.8 3.8 87 41-140 466-552 (727)
32 PF14695 LINES_C: Lines C-term 40.5 59 0.0013 18.5 3.3 32 68-107 5-36 (39)
33 PF03670 UPF0184: Uncharacteri 36.1 66 0.0014 21.4 3.5 27 57-83 23-49 (83)
34 KOG0463|consensus 27.2 34 0.00074 29.6 1.3 17 36-52 219-235 (641)
35 KOG0081|consensus 25.6 72 0.0016 24.3 2.6 20 33-52 64-83 (219)
36 PF11114 Minor_capsid_2: Minor 22.4 41 0.00088 23.6 0.8 10 91-100 37-46 (112)
37 KOG0080|consensus 20.4 1.6E+02 0.0034 22.6 3.5 30 17-52 47-76 (209)
38 PF07208 DUF1414: Protein of u 20.2 93 0.002 18.2 1.8 19 65-83 5-23 (44)
No 1
>KOG4280|consensus
Probab=100.00 E-value=7.1e-43 Score=299.81 Aligned_cols=138 Identities=33% Similarity=0.439 Sum_probs=127.2
Q ss_pred ccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 85 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~ 85 (154)
+..|||||+|||++|++.....++....+.|+|+|||||||||..++++.|++++|+.+||+||++||+||.||+++..
T Consensus 205 n~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~- 283 (574)
T KOG4280|consen 205 NEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK- 283 (574)
T ss_pred CcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc-
Confidence 5679999999999999955444457788999999999999999999999999999999999999999999999999872
Q ss_pred CCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCccc
Q psy16999 86 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHALL 153 (154)
Q Consensus 86 ~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~~ 153 (154)
.||||||||||+||||+||||+ +|+|||||+|...+|+||++|| +||+|++ .|.|+|+|
T Consensus 284 -----~HIPYRdSkLT~LLqdSLGGN~-kT~mianvsp~~~~~~ETlsTL-rfA~Rak--~I~nk~~i 342 (574)
T KOG4280|consen 284 -----THIPYRDSKLTRLLQDSLGGNS-KTTMIANVSPSSDNYEETLSTL-RFAQRAK--AIKNKPVI 342 (574)
T ss_pred -----CCCCcchhHHHHHHHHHcCCCc-eEEEEEecCchhhhhHHHHHHH-HHHHHHH--Hhhccccc
Confidence 4999999999999999999999 9999999999999999999999 9999999 66777765
No 2
>KOG0245|consensus
Probab=100.00 E-value=6.6e-42 Score=303.23 Aligned_cols=144 Identities=28% Similarity=0.410 Sum_probs=133.0
Q ss_pred ccccCCceeEEEEEEEEEEecCCC-CcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGS-EELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~-~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
|..|||||++|||...+...+.+. .+..++|+|+|||||||||...+++.|+|++|+.+|||||.+||.||.||++.+.
T Consensus 210 NdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~ 289 (1221)
T KOG0245|consen 210 NDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQK 289 (1221)
T ss_pred ccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhc
Confidence 568999999999999998888875 5689999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCccc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHALL 153 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~~ 153 (154)
.++++..+||||||.|||||++.||||+ +|.||+++||...+|+|||+|| |||+|+|+| +|+|+|
T Consensus 290 ~k~~ks~fIPYRDSVLTWLLkEnLGGNS-KTaMIAAlSPAdiNyeETLSTL-RYAdRAK~I--v~~avV 354 (1221)
T KOG0245|consen 290 GKKKKSDFIPYRDSVLTWLLKENLGGNS-KTAMIAALSPADINYEETLSTL-RYADRAKQI--VNNAVV 354 (1221)
T ss_pred cCCCCCccccchHHHHHHHHHHhcCCcc-hhhhhhccChhhcChHHHHHHH-HHhhHhhhh--hcccee
Confidence 5667778999999999999999999999 9999999999999999999999 999999955 455543
No 3
>KOG0243|consensus
Probab=100.00 E-value=1.6e-41 Score=303.42 Aligned_cols=135 Identities=30% Similarity=0.432 Sum_probs=129.1
Q ss_pred ccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 85 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~ 85 (154)
|-+|||||+||+|.|.+...+..+.+.++.|+|.+|||||||.++++|+.+.|-+|++.||+||.+||+||+||.++.
T Consensus 260 N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-- 337 (1041)
T KOG0243|consen 260 NDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-- 337 (1041)
T ss_pred hhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC--
Confidence 568999999999999999999888999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccC
Q psy16999 86 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPN 149 (154)
Q Consensus 86 ~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~ 149 (154)
.|||||+|||||||||+|||.. +|+||+||||+..+.+||++|| +||.|++.|+-++
T Consensus 338 -----~HIPYRESKLTRLLQDSLGGkT-KT~iIATiSPa~~~lEETlSTL-EYA~RAKnIkNKP 394 (1041)
T KOG0243|consen 338 -----GHIPYRESKLTRLLQDSLGGKT-KTCIIATISPAKHNLEETLSTL-EYAHRAKNIKNKP 394 (1041)
T ss_pred -----CCCCchHHHHHHHHHHHhCCCc-eeEEEEEeCCCcccHHHHHHHH-HHHHHhhhccCCC
Confidence 9999999999999999999999 9999999999999999999999 9999999665544
No 4
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.1e-40 Score=270.45 Aligned_cols=135 Identities=31% Similarity=0.411 Sum_probs=121.6
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
.+..|||||+||+|.|........ ......|+|+|||||||||..++++.|.+++|++.||+||.+|++||.+|++...
T Consensus 203 ~n~~SSRSH~i~~i~v~~~~~~~~-~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~ 281 (337)
T cd01373 203 MNSESSRSHAVFTCTIESWEKKAS-STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAH 281 (337)
T ss_pred CCCCCCCccEEEEEEEEEeecCCC-CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhcc
Confidence 477899999999999987655433 3357789999999999999999999999999999999999999999999987541
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSY 145 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i 145 (154)
++..|||||+||||+||+|+|||++ +|+||+||+|...+++||++|| +||+|+++|
T Consensus 282 ---~~~~~ipyR~SkLT~lL~dsLggns-~t~~I~~vsP~~~~~~eTl~TL-~fa~rak~I 337 (337)
T cd01373 282 ---GKQRHVPYRDSKLTFLLRDSLGGNA-KTTIIANVSPSSKCFGETLSTL-KFAQRAKLI 337 (337)
T ss_pred ---CCCCccCCcccHHHHHHHHhcCCCc-eEEEEEEECCCcccHHHHHHHH-HHHHHhhcC
Confidence 2358999999999999999999999 9999999999999999999999 999999965
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.4e-39 Score=266.61 Aligned_cols=135 Identities=30% Similarity=0.449 Sum_probs=124.3
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
-+..|||||+||+|+|.+.....+.......|+|+||||||+||..+.+..|.+++|+..||+||.+|++||.+|++++.
T Consensus 204 ~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~ 283 (338)
T cd01370 204 ANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK 283 (338)
T ss_pred ccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC
Confidence 46789999999999999887765445678889999999999999999999999999999999999999999999998752
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSY 145 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i 145 (154)
...|||||+||||+||+|+||||+ +++||+||+|...+++||++|| +||+|+++|
T Consensus 284 ----~~~~ipyR~SkLT~lL~d~Lggn~-~t~~I~~vsp~~~~~~eTl~TL-~fa~ra~~I 338 (338)
T cd01370 284 ----KNKHIPYRDSKLTRLLKDSLGGNC-KTVMIANISPSSSHYEETHNTL-KYANRAKNI 338 (338)
T ss_pred ----CCCcCCCcCCHHHHHHHHhcCCCC-eEEEEEEeCCchhhHHHHHHHH-HHHHHhccC
Confidence 448999999999999999999999 9999999999999999999999 999999975
No 6
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=6.8e-39 Score=264.91 Aligned_cols=138 Identities=29% Similarity=0.432 Sum_probs=126.8
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
.+..|||||++|+|.|.+......+......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|.+++
T Consensus 212 ~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 212 MNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred CCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 4678999999999999987776555566788999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCccc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHALL 153 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~~ 153 (154)
.++|||+||||+||+|+|||++ +++||+||+|...+++||++|| +||++++ +|+|+|+|
T Consensus 291 ------~~vpyR~S~LT~lL~~~Lgg~s-~t~~I~~vsp~~~~~~eTl~TL-~~a~~~~--~i~n~P~~ 349 (352)
T cd01364 291 ------PHIPYRESKLTRLLQDSLGGRT-KTSIIATISPASINLEETLSTL-EYAHRAK--NIKNKPEV 349 (352)
T ss_pred ------CCCCCcccHHHHHHHHhcCCCc-eEEEEEEeCCCcccHHHHHHHH-HHHHHHh--hccCcccc
Confidence 8999999999999999999999 9999999999999999999999 9999999 55666654
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5e-39 Score=290.55 Aligned_cols=142 Identities=30% Similarity=0.423 Sum_probs=125.4
Q ss_pred cccccCCceeEEEEEEEEEEecCC-CCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPG-SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~-~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
-|..|||||+||+|.|.+...... +......|+|+|||||||||..++++.|.+++|+++||+||++|++||.+|+...
T Consensus 297 mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~S 376 (1320)
T PLN03188 297 INAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS 376 (1320)
T ss_pred CCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 478899999999999987654332 2345678999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCcc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHAL 152 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~ 152 (154)
+.++..|||||+||||+||||+||||+ +|+||+||||...+++||++|| +||+|+++ |.|+|+
T Consensus 377 --q~gk~~HIPYRDSKLTrLLQDSLGGNS-KTvMIa~VSPs~~~~eETLSTL-rFAsRAK~--IKNkpv 439 (1320)
T PLN03188 377 --QTGKQRHIPYRDSRLTFLLQESLGGNA-KLAMVCAISPSQSCKSETFSTL-RFAQRAKA--IKNKAV 439 (1320)
T ss_pred --ccCCCCcCCCCcchHHHHHHHhcCCCc-eEEEEEecCCchhhHHHHHHHH-HHHHHHhh--cCccce
Confidence 334568999999999999999999999 9999999999999999999999 99999995 555554
No 8
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=9.9e-39 Score=263.58 Aligned_cols=136 Identities=36% Similarity=0.561 Sum_probs=122.2
Q ss_pred cccccCCceeEEEEEEEEEEecCCC-----CcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHH
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGS-----EELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL 79 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~-----~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL 79 (154)
.+..|||||+||+|+|.+......+ ......|+|+||||||+||..++++.|.+++|+..||+||.+|++||.+|
T Consensus 205 ~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL 284 (345)
T cd01368 205 LNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVL 284 (345)
T ss_pred CcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 4788999999999999887665421 35678899999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy16999 80 RENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVR 143 (154)
Q Consensus 80 ~~~~~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~ 143 (154)
.+++. ...+..|||||+||||+||+|+|+|++ +|+||+||+|...+++||++|| +||.+++
T Consensus 285 ~~~~~-~~~~~~~iPyR~SkLT~lL~~~l~g~s-~t~~I~~vsp~~~~~~eTl~tL-~fa~~a~ 345 (345)
T cd01368 285 RENQL-SGSTNKMVPYRDSKLTHLFQNYFDGEG-KARMIVNVNPCASDYDETLHVM-KFSAIAQ 345 (345)
T ss_pred Hhhhc-ccCCCCcCCCcCCHHHHHHHHhcCCCC-eEEEEEEeCCchhhHHHHHHHH-HHHHhcC
Confidence 98652 112569999999999999999999999 9999999999999999999999 9999875
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.4e-38 Score=260.00 Aligned_cols=145 Identities=28% Similarity=0.420 Sum_probs=128.3
Q ss_pred cccccCCceeEEEEEEEEEEecCC-CCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPG-SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~-~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
.+..|||||+||+|+|.+...... .......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|.+++
T Consensus 209 ~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~ 288 (356)
T cd01365 209 MNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNS 288 (356)
T ss_pred CCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 478899999999999998776543 3557788999999999999999999999999999999999999999999999865
Q ss_pred CC-CCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCccc
Q psy16999 84 GL-KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHALL 153 (154)
Q Consensus 84 ~~-~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~~ 153 (154)
.. ..++..|||||+||||+||+|+|||++ +++||+||+|...+++||++|| +||+++++ |+|.|++
T Consensus 289 ~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s-~t~~I~~vsp~~~~~~eTl~tL-~fa~~~~~--i~~~~~~ 355 (356)
T cd01365 289 SAKSKKKSSFIPYRDSVLTWLLKENLGGNS-KTAMIATISPADINYEETLSTL-RYADRAKK--IVNVAVV 355 (356)
T ss_pred cccccCCCCcCCCcCcHHHHHHHHhcCCCc-eEEEEEEeCCCcccHHHHHHHH-HHHHHHhh--ccCcccc
Confidence 21 124569999999999999999999999 9999999999999999999999 99999995 5555543
No 10
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=7.2e-38 Score=257.24 Aligned_cols=134 Identities=30% Similarity=0.422 Sum_probs=123.9
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
-.+..|||||+||+|+|++......+......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|.+++
T Consensus 200 ~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~ 279 (333)
T cd01371 200 NMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK 279 (333)
T ss_pred cccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC
Confidence 35788999999999999988776555667888999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSY 145 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i 145 (154)
..|+|||+||||+||+|+|+|++ +++||+|++|...+++||++|| +||+|+|+|
T Consensus 280 ------~~~ipyR~SkLT~lL~~~l~g~s-~t~~I~~vsP~~~~~~eTl~TL-~fa~r~r~I 333 (333)
T cd01371 280 ------STHIPYRDSKLTRLLQDSLGGNS-KTVMCANIGPADYNYDETLSTL-RYANRAKNI 333 (333)
T ss_pred ------CCcCCCccCHHHHHHHHhcCCCc-eEEEEEEeCCccccHHHHHHHH-HHHHHhhcC
Confidence 25999999999999999999999 9999999999999999999999 999999975
No 11
>KOG0240|consensus
Probab=100.00 E-value=2.3e-38 Score=268.24 Aligned_cols=130 Identities=30% Similarity=0.381 Sum_probs=121.6
Q ss_pred ccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 85 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~ 85 (154)
+..|||||+||+|+|.+...... ..+.|+|.||||||+|+..++++.|.-+.|+++||+||.+|++||+||+++.
T Consensus 203 n~~sSRSHsIF~i~VkQ~n~e~~---~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~-- 277 (607)
T KOG0240|consen 203 NEHSSRSHSIFLIHVKQENVEDK---RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGP-- 277 (607)
T ss_pred cccccccceEEEEEEEeccccch---hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCC--
Confidence 56899999999999999877544 6888999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Q psy16999 86 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYR 146 (154)
Q Consensus 86 ~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~ 146 (154)
..|||||||||||+|||+||||+ +|.+|.|++|+.-+..||.+|| +|++|++.|+
T Consensus 278 ----~shipYRDSKLTRILqdSLGGNs-RTtlIi~csPss~n~~ET~STl-~fg~rak~ik 332 (607)
T KOG0240|consen 278 ----KSHIPYRDSKLTRILQDSLGGNS-RTTLIICCSPSSLNEAETKSTL-RFGNRAKTIK 332 (607)
T ss_pred ----CCCCcchhhHHHHHHHHHhCCCc-ceEEEEecCCccccccccccch-hhcccccccc
Confidence 39999999999999999999999 9999999999999999999999 9999999443
No 12
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.9e-37 Score=251.96 Aligned_cols=131 Identities=30% Similarity=0.368 Sum_probs=120.6
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
-.+..|||||++|+|+|.+.+.. ......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|.+++
T Consensus 195 ~~n~~ssRSH~i~~i~v~~~~~~---~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~ 271 (325)
T cd01369 195 NMNEESSRSHSIFLITLKQENVE---TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGK 271 (325)
T ss_pred cCCCccccccEEEEEEEEEEecC---CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 35788999999999999876643 335788999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSY 145 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i 145 (154)
. .|+|||+||||+||+|+|+|++ +++||+|++|...+++||++|| +||+|+|+|
T Consensus 272 ~------~~vpyR~S~LT~lL~~~L~g~s-~t~~I~~vsp~~~~~~eTl~TL-~~a~r~~~i 325 (325)
T cd01369 272 S------THIPYRDSKLTRILQDSLGGNS-RTTLIICCSPSSYNESETLSTL-RFGARAKTI 325 (325)
T ss_pred C------CcCCCccCHHHHHHHHhcCCCC-eEEEEEEeCCccccHHHHHHHH-HHHHHhhcC
Confidence 2 8999999999999999999999 9999999999999999999999 999999975
No 13
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=4.2e-37 Score=253.11 Aligned_cols=136 Identities=33% Similarity=0.448 Sum_probs=124.2
Q ss_pred cccccCCceeEEEEEEEEEEecCC-------CCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHH
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPG-------SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFN 77 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~-------~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~ 77 (154)
.++.|||||++|+|+|.+...... .......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.
T Consensus 199 ~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~ 278 (341)
T cd01372 199 MNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVIS 278 (341)
T ss_pred CCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHH
Confidence 568899999999999999887421 2456788999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Q psy16999 78 VLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYR 146 (154)
Q Consensus 78 aL~~~~~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~ 146 (154)
+|.+++ ++..|+|||+||||+||+|+|||++ +++||+|++|...+++||++|| +||+++|+|+
T Consensus 279 al~~~~----~~~~~ipyR~S~LT~lL~~~Lgg~s-~t~~I~~vsp~~~~~~eTl~tL-~~a~~~~~ik 341 (341)
T cd01372 279 ALGDES----KKGSHVPYRDSKLTRLLQDSLGGNS-HTLMIACVSPADSNFEETLNTL-KYANRARNIK 341 (341)
T ss_pred HHHhcC----CCCCCCCCcccHHHHHHHHhcCCCc-eEEEEEEeCCChhhHHHHHHHH-HHHHHhccCC
Confidence 999865 2447999999999999999999999 9999999999999999999999 9999999875
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.5e-37 Score=251.88 Aligned_cols=125 Identities=27% Similarity=0.426 Sum_probs=116.0
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
.+..|||||+||+|.|.+... .....|+|+||||||+|+..+.++.|.+++|+..||+||.+|++||.+|..+.
T Consensus 195 ~n~~SSRSH~i~~i~v~~~~~-----~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~- 268 (319)
T cd01376 195 LNDNSSRSHAVLRIKVTQPAS-----NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL- 268 (319)
T ss_pred CCCccCCCeEEEEEEEEEECC-----CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-
Confidence 367899999999998876532 24778999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVR 143 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~ 143 (154)
.|+|||+||||+||+|+|+|++ +|+||+||+|...+++||++|| +||+|+|
T Consensus 269 ------~~ipyr~S~LT~lL~~~L~g~s-~t~~i~~vsp~~~~~~eTl~TL-~fa~r~~ 319 (319)
T cd01376 269 ------PRIPYRESKLTRLLQDSLGGGS-RCIMVANIAPERSFYQDTLSTL-NFASRSK 319 (319)
T ss_pred ------CcCCCccCHHHHHHHHhcCCCc-cEEEEEEeCCchhhHHHHHHHH-HHHHhhC
Confidence 8999999999999999999999 9999999999999999999999 9999985
No 15
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.7e-37 Score=252.07 Aligned_cols=130 Identities=30% Similarity=0.463 Sum_probs=120.4
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
.+..|||||+||+|+|.+...... ......|+|+||||||+|+..+.+..+..++|++.||+||.+|++||.+|.+++
T Consensus 205 ~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~- 282 (334)
T cd01375 205 MNQASSRSHCIFTIHLESRSREAG-SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA- 282 (334)
T ss_pred CcCCcCcCeEEEEEEEEEEecCCC-CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC-
Confidence 467899999999999998866554 557788999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVR 143 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~ 143 (154)
..||||||||||+||+|+|||++ +++||+||+|...+++||++|| +||+|++
T Consensus 283 -----~~~ipyRdSkLT~lL~d~Lgg~~-~t~~I~~vsp~~~~~~eTl~TL-~fa~r~~ 334 (334)
T cd01375 283 -----RTHVPYRNSKLTHVLRDSLGGNC-KTVMLATIWVEPSNLDETLSTL-RFAQRVA 334 (334)
T ss_pred -----CCCCCCcccHHHHHHHHhcCCCc-eEEEEEEeCCchhhHHHHHHHH-HHHHhcC
Confidence 38999999999999999999999 9999999999999999999999 9999974
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.6e-37 Score=250.70 Aligned_cols=133 Identities=29% Similarity=0.395 Sum_probs=122.6
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
.+.+|||||++|+|+|.+.............|+|+||||||+|+..+.+ .+.+++|+..||+||.+|++||.+|.+++.
T Consensus 189 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~ 267 (321)
T cd01374 189 FNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN 267 (321)
T ss_pred CCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC
Confidence 4678999999999999988776544567888999999999999999988 889999999999999999999999999751
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSY 145 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i 145 (154)
..|+|||+||||+||+|+|+|++ +++||+|++|...+++||++|| +||+++++|
T Consensus 268 -----~~~vpyR~SkLT~lL~~~L~g~s-~t~~i~~vsp~~~~~~eTl~TL-~~a~r~~~i 321 (321)
T cd01374 268 -----SGHIPYRDSKLTRILQPSLSGNA-RTAIICTISPASSHVEETLNTL-KFASRAKKV 321 (321)
T ss_pred -----CCcCCCcCCHHHHHHHHhcCCCc-eEEEEEEeCCccccHHHHHHHH-HHHHHHhcC
Confidence 48999999999999999999999 9999999999999999999999 999999965
No 17
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.1e-36 Score=249.26 Aligned_cols=124 Identities=30% Similarity=0.427 Sum_probs=114.4
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccC-ccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAH-TSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~-~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
.+..|||||++|+|+|..... ....|+|+||||||+|+..+.+ ..+++++|+..||+||.+|++||.+|.+++
T Consensus 198 ~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~ 271 (322)
T cd01367 198 ANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK 271 (322)
T ss_pred CCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC
Confidence 578999999999999987554 4567999999999999988765 467889999999999999999999999876
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVR 143 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~ 143 (154)
.||||||||||+||+|+|+|++ +++||+||+|...+++||++|| +||+|++
T Consensus 272 -------~~iPyRdSkLT~lL~~~L~g~~-~t~~I~~vsp~~~~~~eTl~tL-~fa~r~k 322 (322)
T cd01367 272 -------AHVPFRGSKLTQVLRDSFIGNS-KTVMIATISPSASSCEHTLNTL-RYADRVK 322 (322)
T ss_pred -------CcCCCccCHHHHHHHHhhCCCC-eEEEEEEeCCchhhHHHHHHHH-HHHHhhC
Confidence 8999999999999999999999 9999999999999999999999 9999985
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.9e-36 Score=248.20 Aligned_cols=132 Identities=30% Similarity=0.422 Sum_probs=122.8
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
..+..|||||++|+|+|.+.... +.....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|.++.
T Consensus 197 ~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~ 273 (329)
T cd01366 197 NMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD 273 (329)
T ss_pred cccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCC
Confidence 45788999999999999887653 446788999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRV 147 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i 147 (154)
.|+|||+||||+||+|+|+|++ +++||+||+|...+++||++|| +||+++++|++
T Consensus 274 -------~~ipyr~S~LT~lL~~~l~g~~-~t~~i~~vsp~~~~~~etl~tL-~~a~~~~~i~~ 328 (329)
T cd01366 274 -------SHVPYRNSKLTYLLQDSLGGNS-KTLMFVNISPLESNLSETLCSL-RFASRVRSVEL 328 (329)
T ss_pred -------CcCCCcccHhHHHHHHhcCCCc-eEEEEEEeCCchhhHHHHHHHH-HHHHHhhcccC
Confidence 8999999999999999999999 9999999999999999999999 99999998764
No 19
>KOG0242|consensus
Probab=100.00 E-value=9.2e-38 Score=275.11 Aligned_cols=133 Identities=30% Similarity=0.401 Sum_probs=122.3
Q ss_pred ccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 85 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~ 85 (154)
|..|||||+||+|.|.+...... . ..++|+|||||||||...+++.|.+++|+.+||+||++|++||++|.++..
T Consensus 203 N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~- 277 (675)
T KOG0242|consen 203 NEQSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR- 277 (675)
T ss_pred ccccchhhheeeEEEEecccccc---c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc-
Confidence 56899999999999998776554 2 779999999999999999999999999999999999999999999998742
Q ss_pred CCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccC
Q psy16999 86 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPN 149 (154)
Q Consensus 86 ~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~ 149 (154)
..||||||||||||||++||||+ +|.|||||+|...+|+||.+|| +||+|++.|+...
T Consensus 278 ----~~hipYRDSKLTRiLq~sLgGn~-rt~~I~tisp~~~~~~eT~nTL-~fAsrak~i~~~~ 335 (675)
T KOG0242|consen 278 ----PRHIPYRDSKLTRLLQDSLGGNA-RTAIIATISPSSSHYEETKNTL-KFASRAKEITTKA 335 (675)
T ss_pred ----cCCCCccccHHHHhchhhcCCCc-cEEEEEEeCchhhHHHHHHHHH-HHHHHhhhccccc
Confidence 25999999999999999999999 9999999999999999999999 9999999877764
No 20
>KOG0241|consensus
Probab=100.00 E-value=1.2e-36 Score=268.07 Aligned_cols=143 Identities=29% Similarity=0.433 Sum_probs=133.4
Q ss_pred ccccCCceeEEEEEEEEEEecCCC-CcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGS-EELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~-~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
+.+|||||++|.+.|.+.-.+... ....+.|+|++|||||+||..++++.|.+++|+.+||+||.+|+.||.||+.+..
T Consensus 214 n~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n 293 (1714)
T KOG0241|consen 214 NEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKN 293 (1714)
T ss_pred cccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhc
Confidence 567999999999999988777764 5567889999999999999999999999999999999999999999999999775
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCccc
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHALL 153 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~~ 153 (154)
++++.++||||||.|||||+|.||||| +|+||+||||..++|+|||+|| |||+|+| +|+|||+|
T Consensus 294 -~kgkdKfvPYrDSVLTwLLkD~LGGNs-rTvMiatvSPaAdnyeeTlStL-RYadrAk--rIvN~avv 357 (1714)
T KOG0241|consen 294 -GKGKDKFVPYRDSVLTWLLKDNLGGNS-RTVMIATVSPAADNYEETLSTL-RYADRAK--RIVNHAVV 357 (1714)
T ss_pred -CCCccccccchhHHHHHHHHhhcCCCc-eeEEEEEecccccchHHHHHHH-HHHHHHH--Hhhccccc
Confidence 557789999999999999999999999 9999999999999999999999 9999999 99999986
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=8.1e-36 Score=244.47 Aligned_cols=134 Identities=33% Similarity=0.455 Sum_probs=119.7
Q ss_pred cccccCCceeEEEEEEEEEEecCCCC-cceeEeeEEEEeCCCCccccccCcc-ccchHHHHHhhhhHHHHHHHHHHHhhc
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSE-ELIVMSSFDICDLAGAERQKRAHTS-GDRLREARTINSSLHVLARCFNVLREN 82 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~-~~~~~S~L~~VDLAGsEr~~~~~~~-~~~~~E~~~in~Sl~~L~~vi~aL~~~ 82 (154)
.+..|||||++|+|+|.+........ .....|+|+||||||+|+..+.... +.+.+|+..||+||.+|++||.+|.++
T Consensus 200 ~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~ 279 (335)
T PF00225_consen 200 MNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG 279 (335)
T ss_dssp CTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc
Confidence 35679999999999999988766532 2468899999999999999988764 788999999999999999999999997
Q ss_pred cCCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Q psy16999 83 NGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSY 145 (154)
Q Consensus 83 ~~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i 145 (154)
++..++|||+||||+||+|+|+|++ +++||+||+|...+++||++|| +||+++|+|
T Consensus 280 -----~~~~~vpyr~SkLT~lL~d~l~g~s-~t~~I~~vsp~~~~~~eTl~tL-~fa~~~~~I 335 (335)
T PF00225_consen 280 -----SKQSHVPYRDSKLTRLLKDSLGGNS-KTILIVCVSPSSEDYEETLSTL-RFASRAREI 335 (335)
T ss_dssp -----TSTSSSCGGGSHHHHHTGGGTSSSS-EEEEEEEE-SBGGGHHHHHHHH-HHHHHHTTE
T ss_pred -----ccchhhhhhcccccceecccccccc-cceeEEEcCCccccHHHHHHHH-HHHHHHcCC
Confidence 1238999999999999999999999 9999999999999999999999 999999965
No 22
>KOG0247|consensus
Probab=100.00 E-value=6.8e-36 Score=258.79 Aligned_cols=141 Identities=35% Similarity=0.555 Sum_probs=130.8
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
=|..|||||+||+|.|.+..... +....++|.|+|||||||||..+++++|.+++||++||.||++|++||.+|.+++
T Consensus 301 lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nq- 378 (809)
T KOG0247|consen 301 LNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQ- 378 (809)
T ss_pred ccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHh-
Confidence 47889999999998888877664 3678999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCC
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNH 150 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~ 150 (154)
+.+.+.+|||||||||++++.+|.|++ +..||+||+|...+|+|+++.| +||.-++.|.+.+.
T Consensus 379 -k~ks~~~VPyRdSKLThlfq~~f~G~g-ki~MIV~vnp~~e~YdEnl~vl-kFaeiaq~v~v~~~ 441 (809)
T KOG0247|consen 379 -KSKSQKIVPYRDSKLTHLFKNYFDGKG-KIRMIVCVNPKAEDYDENLNVL-KFAEIAQEVEVARP 441 (809)
T ss_pred -hhhccccCcchHHHHHHHHHHhcCCCC-cEEEEEecCCchhhHHHHHHHH-HHHHhcccccccCc
Confidence 566669999999999999999999999 9999999999999999999999 99999998887753
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.4e-35 Score=239.03 Aligned_cols=139 Identities=32% Similarity=0.440 Sum_probs=125.2
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
-.+..|||||++|+|+|.+...... ......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+++.
T Consensus 195 ~~n~~ssRsH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~ 273 (335)
T smart00129 195 KMNEESSRSHAVFTITVESKIKNSS-SGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ 273 (335)
T ss_pred CCCCCCCcceEEEEEEEEEEecCCC-CCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC
Confidence 3578899999999999997755443 567889999999999999999999999999999999999999999999999842
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCcc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNHAL 152 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~~~ 152 (154)
+..++|||+|+||+||+++|+|++ +++||+|++|...+++||++|| +||++++ +|.|+|+
T Consensus 274 -----~~~~ip~r~S~LT~lL~~~L~g~~-~~~~i~~vsp~~~~~~eTl~tL-~~a~~~~--~i~~~p~ 333 (335)
T smart00129 274 -----KSRHIPYRDSKLTRLLQDSLGGNS-KTLMIANISPSLSNLEETLSTL-RFASRAK--EIKNKAI 333 (335)
T ss_pred -----CCCCCCCcCcHhHHHHHHHcCCCC-eEEEEEEcCCCccchHHHHHHH-HHHHHHh--hcccCCC
Confidence 238999999999999999999999 9999999999999999999999 9999999 5666654
No 24
>KOG0246|consensus
Probab=100.00 E-value=2.9e-35 Score=249.44 Aligned_cols=132 Identities=30% Similarity=0.399 Sum_probs=117.0
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCcc-ccchHHHHHhhhhHHHHHHHHHHHhhc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTS-GDRLREARTINSSLHVLARCFNVLREN 82 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~-~~~~~E~~~in~Sl~~L~~vi~aL~~~ 82 (154)
.=|+.|||||++|+|.+.. ......+++++||||||+||..++... .+...|+..|||||.+|.+||+||.++
T Consensus 413 sANs~SSRSHAvfQIilr~------~~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~n 486 (676)
T KOG0246|consen 413 SANSNSSRSHAVFQIILRK------HGEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRN 486 (676)
T ss_pred cCcccccccceeEeeeeec------CCcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCC
Confidence 4478999999999777663 233567899999999999998887544 466679999999999999999999998
Q ss_pred cCCCCCCCCcccCCCchhhHHhhhhcCC-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCC
Q psy16999 83 NGLKADKKKLIPFRDSKLTQIFQRSLSG-LSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVPNH 150 (154)
Q Consensus 83 ~~~~~~~~~~ipyr~SkLT~lL~d~L~g-~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~~~ 150 (154)
+ .|+|||.||||.+|+|+|-| |+ +|+||+||||....+++||+|| |||+|+++.-+...
T Consensus 487 k-------~H~PFR~SKLTqVLRDSFIGenS-rTcMIA~ISPg~~ScEhTLNTL-RYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 487 K-------SHLPFRGSKLTQVLRDSFIGENS-RTCMIATISPGISSCEHTLNTL-RYADRVKELSVDGG 546 (676)
T ss_pred C-------CCCCchhhhHHHHHHHhhcCCCC-ceEEEEEeCCCcchhhhhHHHH-HHHHHHHhhcCCCC
Confidence 7 99999999999999999999 88 9999999999999999999999 99999998776654
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.1e-34 Score=231.74 Aligned_cols=132 Identities=33% Similarity=0.449 Sum_probs=120.9
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
-+++.|||||++|+|+|.+...... ......|+|+||||||+|+..+.+..+.+..|+..||+||.+|++||.+|..++
T Consensus 197 ~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~ 275 (328)
T cd00106 197 AMNERSSRSHAIFTIHVEQRNTTND-GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ 275 (328)
T ss_pred cCCCCcCcCcEEEEEEEEEEecCCC-CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC
Confidence 3578899999999999998877554 225888999999999999999988999999999999999999999999999865
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVR 143 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~ 143 (154)
. ..++|||+||||+||+|+|+|++ +++||+|++|...+++||++|| +||+|+|
T Consensus 276 ~-----~~~ip~r~SkLT~lL~~~l~g~~-~t~~I~~vsp~~~~~~eTl~tL-~~a~r~~ 328 (328)
T cd00106 276 K-----KKHIPYRDSKLTRLLQDSLGGNS-KTLMIANISPSSENYDETLSTL-RFASRAK 328 (328)
T ss_pred C-----CCcCCCcCcHHHHHHHHhcCCCC-eEEEEEEeCCchhhHHHHHHHH-HHHHhcC
Confidence 2 48999999999999999999999 9999999999999999999999 9999985
No 26
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5e-34 Score=217.17 Aligned_cols=111 Identities=28% Similarity=0.381 Sum_probs=103.8
Q ss_pred cccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccC
Q psy16999 5 RWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNG 84 (154)
Q Consensus 5 r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~ 84 (154)
++..|||||++|+|++.+.............|+|+||||||+|+..+.+..+++++|++.||+||.+|++||.+|.+++
T Consensus 76 ~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~- 154 (186)
T cd01363 76 MNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD- 154 (186)
T ss_pred CCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 5788999999999999988776655567889999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCC
Q psy16999 85 LKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNA 123 (154)
Q Consensus 85 ~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp 123 (154)
.++|||+||||+||||+|+||+ +++||+||||
T Consensus 155 ------~~vpyr~SkLT~lL~~~L~g~~-~t~~i~~vsP 186 (186)
T cd01363 155 ------SHVPYRESKLTRLLQDSLGGNS-RTLMVACISP 186 (186)
T ss_pred ------CCCCCcccHHHHHHHHhcCCCC-eEEEEEEeCc
Confidence 8999999999999999999999 9999999998
No 27
>KOG0239|consensus
Probab=100.00 E-value=1.4e-34 Score=254.41 Aligned_cols=133 Identities=32% Similarity=0.420 Sum_probs=123.5
Q ss_pred ccccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 4 FRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 4 ~r~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
.=+.+|||||++|+++|.-... .......+.|.|||||||||..+++..|+|++|++.||+||++|++||.||+...
T Consensus 511 ~~Ne~SSRSH~v~~v~v~g~~~---~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~ 587 (670)
T KOG0239|consen 511 ASNERSSRSHLVFRVRIRGINE---LTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKR 587 (670)
T ss_pred ccchhhhccceEEEEEEecccc---CcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcC
Confidence 3477899999999999987733 3446778999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhcccccc
Q psy16999 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVP 148 (154)
Q Consensus 84 ~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~ 148 (154)
.||||||||||+||+|+|||++ +|+|+++++|...++.||+++| +||.|++.+++-
T Consensus 588 -------~HiPyRNSKLT~lLq~sLGG~s-KTLmfv~isP~~~~~~Etl~sL-~FA~rv~~~~lG 643 (670)
T KOG0239|consen 588 -------SHIPYRNSKLTQLLQDSLGGDS-KTLMFVNISPAAAALFETLCSL-RFATRVRSVELG 643 (670)
T ss_pred -------CCCcccccchHHHhHhhhCCcc-ceeeEEEeCccHHHHhhhhhcc-chHHHhhceecc
Confidence 9999999999999999999999 9999999999999999999999 999999988765
No 28
>KOG0244|consensus
Probab=99.98 E-value=1.1e-34 Score=256.50 Aligned_cols=134 Identities=30% Similarity=0.400 Sum_probs=121.0
Q ss_pred ccccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCC
Q psy16999 6 WSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGL 85 (154)
Q Consensus 6 ~~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~ 85 (154)
|++|||||+|||+++++...... .....++|+||||||+||..+++..|.+++|+.+||.+|++|++||.||.....
T Consensus 187 N~qssRshAifti~lkq~kk~~~--~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk- 263 (913)
T KOG0244|consen 187 NAQSSRSHAIFTITLKQRKKLSK--RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK- 263 (913)
T ss_pred chhhhhhhHHHHHHHHHHHHhhc--cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc-
Confidence 68899999999999987554332 235569999999999999999999999999999999999999999999998651
Q ss_pred CCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhcccccc
Q psy16999 86 KADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVP 148 (154)
Q Consensus 86 ~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~ 148 (154)
..|+|||+||||+||||+||||+ .++||+||||...+.+||++|| +||.|+++|++.
T Consensus 264 ----~~~vpyRdSkltrlLQdslgGns-~tlmiaCiSpadsn~~EtlnTl-~ya~Rak~iknk 320 (913)
T KOG0244|consen 264 ----GGEVPYRDSKLTRLLQDSLGGNS-DTLMIACISPADSNAQETLNTL-RYADRAKQIKNK 320 (913)
T ss_pred ----CCcccchHHHHHHHHHHHhcCCc-ceeeeeecChhhhhhhhHHHHH-HHhhHHHHhccc
Confidence 46999999999999999999999 9999999999999999999999 999999955543
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.97 E-value=5e-30 Score=223.32 Aligned_cols=132 Identities=33% Similarity=0.448 Sum_probs=118.5
Q ss_pred cccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCCC
Q psy16999 7 SEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLK 86 (154)
Q Consensus 7 ~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~~ 86 (154)
..|||||++|++.+.+...... ....+++++|||||+|+...++..+.++.|+..||+||.+|++||.+|...
T Consensus 208 ~~ssRshsi~~i~~~~~~~~~~---~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~---- 280 (568)
T COG5059 208 DESSRSHSIFQIELASKNKVSG---TSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK---- 280 (568)
T ss_pred cccccceEEEEEEEEEeccCcc---ceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc----
Confidence 5799999999999988776554 233379999999999999999999999999999999999999999999972
Q ss_pred CCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHhcccccc
Q psy16999 87 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQYRVKIIDSVRSYRVP 148 (154)
Q Consensus 87 ~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~vsp~~~~~~eTl~tL~~fa~r~~~i~i~ 148 (154)
++..|+|||+|||||+|+++|||++ ++.+||||+|...+++||.+|| +||++++.|+..
T Consensus 281 -~~~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL-~~a~rak~I~~~ 339 (568)
T COG5059 281 -KKSGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTL-KFASRAKSIKNK 339 (568)
T ss_pred -ccCCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHH-HHHHHHhhcCCc
Confidence 2238999999999999999999999 9999999999999999999999 999999955543
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=85.37 E-value=0.11 Score=46.15 Aligned_cols=67 Identities=27% Similarity=0.301 Sum_probs=49.0
Q ss_pred cccCCceeEEEEEEEEEEecCCCCcceeEeeEEEEeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHh
Q psy16999 7 SEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLR 80 (154)
Q Consensus 7 ~~ssRSH~i~~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~ 80 (154)
..++|+|..|............ .. . +..||+||+|+. -....+.++++...+|+++..++.++.++.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~---~~--~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 500 LRSSRSHSKFRDHLNGSNSSTK---EL--S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhcccchhhhhcccchhhhhH---HH--H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 4567888888433332111111 11 1 799999999999 888889999999999999999999887653
No 31
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=50.96 E-value=20 Score=32.79 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=64.7
Q ss_pred EeCCCCccccccCccccchHHHHHhhhhHHHHHHHHHHHhhccCCCCCCCCcccCCCchhhHHhhhhcCCCCCeEEEEEE
Q psy16999 41 CDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVN 120 (154)
Q Consensus 41 VDLAGsEr~~~~~~~~~~~~E~~~in~Sl~~L~~vi~aL~~~~~~~~~~~~~ipyr~SkLT~lL~d~L~g~s~~~~~i~~ 120 (154)
-.++|-|.....+.......+....|+.+..+.+.+..+-+ +..-|..+.|..+++|.- .. ..++-+-
T Consensus 466 ~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~---------rls~~~~~~L~~l~~d~~--~~-~~i~s~l 533 (727)
T PF12726_consen 466 SPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILE---------RLSDFDPSHLKELLSDPD--AA-QAIWSLL 533 (727)
T ss_pred HHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHH---------HHhcCCHHHHHHHHcCcc--hh-hHHHhhe
Confidence 45677787766653344456788899999999988877776 445678899999998773 33 6677778
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q psy16999 121 VNASPAYAEETVQYRVKIID 140 (154)
Q Consensus 121 vsp~~~~~~eTl~tL~~fa~ 140 (154)
+||..+-|+.+++-| +-+.
T Consensus 534 fsp~~~l~qaA~~ll-k~~~ 552 (727)
T PF12726_consen 534 FSPDDDLYQAAQDLL-KQAF 552 (727)
T ss_pred eCCChHHHHHHHHHH-HHHh
Confidence 899888888888877 6544
No 32
>PF14695 LINES_C: Lines C-terminus
Probab=40.46 E-value=59 Score=18.49 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhccCCCCCCCCcccCCCchhhHHhhhh
Q psy16999 68 SLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRS 107 (154)
Q Consensus 68 Sl~~L~~vi~aL~~~~~~~~~~~~~ipyr~SkLT~lL~d~ 107 (154)
-|..|..-|..|..+ .-.||--++|.++|..+
T Consensus 5 cl~~L~~aI~rL~~k--------~LFPYN~~pLLrlL~~~ 36 (39)
T PF14695_consen 5 CLIRLRLAIERLVRK--------NLFPYNPSPLLRLLEQV 36 (39)
T ss_pred HHHHHHHHHHHHHHC--------CCCCCChHHHHHHHHHh
Confidence 355566667777664 56799999999999754
No 33
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=36.10 E-value=66 Score=21.41 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.6
Q ss_pred cchHHHHHhhhhHHHHHHHHHHHhhcc
Q psy16999 57 DRLREARTINSSLHVLARCFNVLRENN 83 (154)
Q Consensus 57 ~~~~E~~~in~Sl~~L~~vi~aL~~~~ 83 (154)
....|-..||.+|..|..|+..|-.+.
T Consensus 23 ~~~~E~~~ins~LD~Lns~LD~LE~rn 49 (83)
T PF03670_consen 23 FDEEEYAAINSMLDQLNSCLDHLEQRN 49 (83)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346788999999999999999998865
No 34
>KOG0463|consensus
Probab=27.24 E-value=34 Score=29.63 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.4
Q ss_pred eeEEEEeCCCCcccccc
Q psy16999 36 SSFDICDLAGAERQKRA 52 (154)
Q Consensus 36 S~L~~VDLAGsEr~~~~ 52 (154)
-.++|+||||-|+.-++
T Consensus 219 KviTFIDLAGHEkYLKT 235 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKT 235 (641)
T ss_pred eeEEEEeccchhhhhhe
Confidence 36899999999997765
No 35
>KOG0081|consensus
Probab=25.56 E-value=72 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=15.2
Q ss_pred eeEeeEEEEeCCCCcccccc
Q psy16999 33 IVMSSFDICDLAGAERQKRA 52 (154)
Q Consensus 33 ~~~S~L~~VDLAGsEr~~~~ 52 (154)
...--|.+.|.||-||...-
T Consensus 64 ~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ceEEEEeeeccccHHHHHHH
Confidence 33346899999999997664
No 36
>PF11114 Minor_capsid_2: Minor capsid protein; InterPro: IPR021080 This entry represents a family of minor capsid proteins found in a number of bacteriophages including Bacteriophage A118. The function of these proteins is not known.
Probab=22.42 E-value=41 Score=23.60 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=7.3
Q ss_pred CcccCCCchh
Q psy16999 91 KLIPFRDSKL 100 (154)
Q Consensus 91 ~~ipyr~SkL 100 (154)
++||++.-.|
T Consensus 37 ~YVP~~~G~L 46 (112)
T PF11114_consen 37 PYVPKDTGTL 46 (112)
T ss_pred CCCCCCCCcc
Confidence 8999995444
No 37
>KOG0080|consensus
Probab=20.39 E-value=1.6e+02 Score=22.58 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=21.8
Q ss_pred EEEEEEEEecCCCCcceeEeeEEEEeCCCCcccccc
Q psy16999 17 EVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRA 52 (154)
Q Consensus 17 ~i~i~~~~~~~~~~~~~~~S~L~~VDLAGsEr~~~~ 52 (154)
-+.+.+++++.. .-+|.+.|.||-||...-
T Consensus 47 DFkvk~m~vdg~------~~KlaiWDTAGqErFRtL 76 (209)
T KOG0080|consen 47 DFKVKVMQVDGK------RLKLAIWDTAGQERFRTL 76 (209)
T ss_pred eEEEEEEEEcCc------eEEEEEEeccchHhhhcc
Confidence 345666666443 357999999999997664
No 38
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=20.23 E-value=93 Score=18.16 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHhhcc
Q psy16999 65 INSSLHVLARCFNVLRENN 83 (154)
Q Consensus 65 in~Sl~~L~~vi~aL~~~~ 83 (154)
...||+.||+++.-+.+.+
T Consensus 5 ~DLsLMvLGN~vTniln~~ 23 (44)
T PF07208_consen 5 TDLSLMVLGNMVTNILNTS 23 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhhc
Confidence 4679999999998888743
Done!