RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16999
(154 letters)
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 97.3 bits (243), Expect = 4e-25
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 19 ILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNV 78
I+ L + + + ++ DLAG+ER + GDRLRE + IN SL L +
Sbjct: 222 IIHLSGSNAKTGA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHA 280
Query: 79 LRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV---QY- 134
L + + K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++ ET+ ++
Sbjct: 281 LGQPDS----TKRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLRFA 335
Query: 135 -RVKII 139
+V
Sbjct: 336 SKVNST 341
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 96.9 bits (242), Expect = 6e-25
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
+ + ++ + DLAG+ER + G R E IN SL L N L ++
Sbjct: 240 DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK 299
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA--EET 131
K + IP+R+SKLT++ + SL G T+ MI V SP+ ++T
Sbjct: 300 R----KNQHIPYRNSKLTRLLKDSLGGNCQTI-MIAAV--SPSSVFYDDT 342
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 96.9 bits (242), Expect = 7e-25
Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 19 ILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNV 78
+++ + ++ I DLAG+ER K++ ++G++L+EA++IN SL L +
Sbjct: 211 SVIIESTNLQTQA-IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISA 269
Query: 79 LRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV---QY- 134
L + + IP+R+ KLT + SL G + T+ M VN++ + + +ET Y
Sbjct: 270 L-------SSGNQHIPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHNSLTYA 321
Query: 135 -RVKII 139
RV+ I
Sbjct: 322 SRVRSI 327
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 96.1 bits (240), Expect = 8e-25
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 101
DLAG+ER ++ G RLREA+ IN SL L L ++ +PFR+SKLT
Sbjct: 234 DLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-------RSRQGHVPFRNSKLT 286
Query: 102 QIFQRSLSGLSSTVKMIVNVNASPAYAEETV---QY--RVKII 139
+ Q SLSG S T+ M+V V+ ET+ ++ RV+ +
Sbjct: 287 YLLQDSLSGDSKTL-MVVQVSPVEKNTSETLYSLKFAERVRSV 328
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 95.3 bits (238), Expect = 2e-24
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
+ EEL+ + ++ DLAG+E R+ R REA IN SL L R L
Sbjct: 238 ETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL---- 293
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETV 132
++ +P+R+SKLT+I Q SL G + T +I + SPA EET+
Sbjct: 294 ---VERTPHVPYRESKLTRILQDSLGGRTRTS-IIATI--SPASLNLEETL 338
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 95.8 bits (239), Expect = 2e-24
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 19 ILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNV 78
I+ L + + + ++ DLAG+ER + GDRLRE + IN SL L +
Sbjct: 278 IIHLSGSNAKTGA-HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHA 336
Query: 79 LRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV---QY- 134
L + + K+ IPFR+SKLT + Q SL+G S T+ M VN++ S ++ ET+ ++
Sbjct: 337 LGQPDS----TKRHIPFRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLNSLRFA 391
Query: 135 -RVKII 139
+V
Sbjct: 392 SKVNST 397
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 94.6 bits (236), Expect = 5e-24
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
Q + + + DLAG+E +R G RL+E+ IN+SL VL + + L
Sbjct: 235 QRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDAL---- 290
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETV 132
+P+RDSKLT++ Q SL G + ++ +I N+ +P + +TV
Sbjct: 291 ---NQGLPRVPYRDSKLTRLLQDSLGGSAHSI-LIANI--APERRFYLDTV 335
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 93.0 bits (232), Expect = 1e-23
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
E + +S ++ DLAG+ER + +G RL+E IN SL +L + L +
Sbjct: 216 GEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ 275
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
I +RDSKLT+I Q SL G + T +I + +P +ET
Sbjct: 276 -----VGGFINYRDSKLTRILQNSLGGNAKTR-IICTI--TPVSFDET 315
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 93.1 bits (232), Expect = 2e-23
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
SEE + S ++ DLAG+ER ++ + G L+EA IN SL L + L +
Sbjct: 250 SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ------ 303
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV---QY--RVKII 139
K+ IPFR KLT + SL G + V ++ N+ A EET+ ++ R+K++
Sbjct: 304 KRDHIPFRQCKLTHALKDSLGGNCNMV-LVTNIYGEAAQLEETLSSLRFASRMKLV 358
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 92.6 bits (231), Expect = 2e-23
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
E + + DLAG+E+ + G L EA+ IN SL L + L A+
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISAL-------AE 270
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV---QY--RVKII 139
+P+RDSK+T+I Q SL G T +++ + S ET + R K I
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTT-IVICCSPSSYNESETKSTLLFGQRAKTI 325
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 92.7 bits (231), Expect = 2e-23
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 19 ILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNV 78
++ + + + E ++ DLAG+ER + +G+RLRE + IN SL L
Sbjct: 225 MVHINGRNLHTGE-TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYA 283
Query: 79 LRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
L + K+ IPFR+SKLT + Q SL G S T+ M VN+ P + ET+
Sbjct: 284 LNTPDA----GKRYIPFRNSKLTYLLQYSLVGDSKTL-MFVNIPPDPNHISETL 332
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 91.8 bits (229), Expect = 4e-23
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
++ + +++S F DLAG+ER + ++G+RL+E+ INSSL L + L +
Sbjct: 231 RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQ 290
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEET 131
+ IP+RDSK+T+I + SL G + TV MI V SP+ +ET
Sbjct: 291 R----RGSHIPYRDSKITRILKDSLGGNAKTV-MIACV--SPSSSDFDET 333
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 91.9 bits (229), Expect = 4e-23
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 101
DLAG+E +R G +E IN L + + + A +IP+RDS LT
Sbjct: 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM-------AAGHTVIPYRDSVLT 293
Query: 102 QIFQRSLSGLSSTVKMIVNVNASPA--YAEET 131
+ Q SL+ S + + SP ET
Sbjct: 294 TVLQASLTAQSYLT-FLACI--SPHQCDLSET 322
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 91.9 bits (229), Expect = 4e-23
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 12/105 (11%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKAD 88
++E+I + ++ DLAG+ERQ + +G+ L E IN SL L + L +
Sbjct: 228 NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL-------VE 280
Query: 89 KKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEET 131
IP+RDSKLT++ Q SL G S T+ M N+ SPA +ET
Sbjct: 281 GATHIPYRDSKLTRLLQDSLGGNSKTL-MCANI--SPASTNYDET 322
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 91.9 bits (229), Expect = 5e-23
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 28 GSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 87
+ + DLAG+ER + +GDRL+E IN SL L + L + + K
Sbjct: 236 SGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKN 295
Query: 88 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA---YAEET 131
K K +P+RDS LT + + SL G S T M+ V SPA Y +ET
Sbjct: 296 -KNKFVPYRDSVLTWLLKDSLGGNSKTA-MVATV--SPAADNY-DET 337
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 91.9 bits (229), Expect = 6e-23
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
+V E I + ++ DLAG+ERQ + G+RL+EA IN SL L + L +
Sbjct: 240 EVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG- 298
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEET 131
K IP+RDSKLT++ Q SL G + TV M+ NV PA EET
Sbjct: 299 -----KSTHIPYRDSKLTRLLQDSLGGNAKTV-MVANV--GPASYNVEET 340
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 91.5 bits (228), Expect = 7e-23
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRA-HTSGDRLREARTINSSLHVLARCFNVLREN 82
+ E+++ + ++ DLAG+E +A + G R+RE IN SL L R L
Sbjct: 248 ENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL--- 304
Query: 83 NGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEETV 132
D+ +P+R+SKLT++ Q SL G + T +I + SP EET+
Sbjct: 305 ----VDRAPHVPYRESKLTRLLQESLGGRTKTS-IIATI--SPGHKDIEETL 349
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 89.5 bits (223), Expect = 4e-22
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL-----RENNGLKADKKKLIPFR 96
DLAG+ER G RL+E IN SL L + + L N K K IP+R
Sbjct: 248 DLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
Query: 97 DSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEET 131
DS LT + + +L G S T M+ + SPA +ET
Sbjct: 308 DSVLTWLLRENLGGNSRTA-MVAAL--SPADINYDET 341
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 88.5 bits (220), Expect = 8e-22
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 29 SEELIVMSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKA 87
+ + DLAG+ER + + + + IN SL L C +
Sbjct: 223 INKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-------D 275
Query: 88 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYA--EETV---QY--RVKII 139
K IPFRDS+LT++ + G S ++ MI N+ SP + E+T+ +Y RVK
Sbjct: 276 SDKNHIPFRDSELTKVLRDIFVGKSKSI-MIANI--SPTISCCEQTLNTLRYSSRVKNK 331
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 88.4 bits (220), Expect = 9e-22
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 24 QVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENN 83
Q + +++ + + DLAG+E+ + G L EA+ IN SL L + L +
Sbjct: 221 QENLENQKKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG- 278
Query: 84 GLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA--YAEET 131
K IP+RDSKLT+I Q SL G + T +++ SPA ET
Sbjct: 279 -----NKTHIPYRDSKLTRILQESLGGNARTT-IVICC--SPASFNESET 320
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 88.5 bits (220), Expect = 1e-21
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 42 DLAGAERQKRAHTSG----DRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRD 97
DLAG+ER G +RLRE + INSSL L L ++K+ +P+R+
Sbjct: 278 DLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL-------SNKESHVPYRN 330
Query: 98 SKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
SKLT + Q SL G + + M VN++ E++
Sbjct: 331 SKLTYLLQNSLGGSAKML-MFVNISPLEENVSESL 364
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 88.6 bits (220), Expect = 1e-21
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 28 GSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVL-------- 79
+ S + DLAG+ER K +G RLRE IN SL L R L
Sbjct: 285 TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSAS 344
Query: 80 -------RENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEET 131
++P+RDS LT + + SL G S T MI + SP +ET
Sbjct: 345 RPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA-MIACI--SPTDYDET 400
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 87.6 bits (218), Expect = 2e-21
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 42 DLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLT 101
DLAG+E+ + SG L EA+ IN SL L N L + K +P+RDSKLT
Sbjct: 235 DLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG------KSSHVPYRDSKLT 288
Query: 102 QIFQRSLSGLSSTVKMIVNVNASPA--YAEETV 132
+I Q SL G S T +I+N SP+ ET+
Sbjct: 289 RILQESLGGNSRTT-LIINC--SPSSYNDAETL 318
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 87.7 bits (218), Expect = 2e-21
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 19 ILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNV 78
L L +E I + S ++ DLAG+E K + R+ E + IN SL L
Sbjct: 270 KLELIGRHAEKQE-ISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILA 324
Query: 79 LRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ----- 133
L K+ IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 325 L-------LQKQDHIPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVKSLRFA 376
Query: 134 YRVKII 139
V
Sbjct: 377 ASVNSC 382
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 82.7 bits (205), Expect = 1e-19
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 42 DLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKL 100
DLAG ER ++ + R E IN SL L C L K PFR+SKL
Sbjct: 286 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAHTPFRESKL 338
Query: 101 TQIFQRS-LSGLSSTVKMIVNVNASPAYA--EETV---QY--RVKII 139
TQ+ + S + S T MI + SP + E T+ +Y RVK +
Sbjct: 339 TQVLRDSFIGENSRTC-MIATI--SPGISSCEYTLNTLRYADRVKEL 382
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 81.9 bits (203), Expect = 3e-19
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 42 DLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKL 100
DLAG ER ++ + R E IN SL L C L K PFR+SKL
Sbjct: 306 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAHTPFRESKL 358
Query: 101 TQIFQRS-LSGLSSTVKMIVNVNASPAYA--EETV---QY--RVKII 139
TQ+ + S + S T MI + SP + E T+ +Y RVK +
Sbjct: 359 TQVLRDSFIGENSRTC-MIAMI--SPGISSCEYTLNTLRYADRVKEL 402
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 60.8 bits (148), Expect = 3e-13
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 62 ARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNV 121
A+ IN SL L + L E K +P+RDSK+T+I Q SL G T +++
Sbjct: 1 AKNINKSLSALGNVISALAEG------TKTHVPYRDSKMTRILQDSLDGNCRTT-IVICC 53
Query: 122 NASPAYAEETV 132
+ S ET
Sbjct: 54 SPSVFNEAETK 64
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 56.2 bits (136), Expect = 3e-11
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 66 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 125
N SL L + L E K +P+RDSK+T+I Q SL G T +++ + S
Sbjct: 1 NKSLSALGNVISALAEG------TKTHVPYRDSKMTRILQDSLGGNCRTT-IVICCSPSV 53
Query: 126 AYAEETV 132
ET
Sbjct: 54 FNEAETK 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 42/222 (18%), Positives = 66/222 (29%), Gaps = 83/222 (37%)
Query: 6 WSEVFRERIIAEVILLLF-------QVDPGS--EELIVMSSFD-----------ICDLAG 45
W F + + I +LF + P + I+ S + I +L
Sbjct: 289 WES-FFV-SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 46 AERQKRAHTSGDRLREARTINSSLHVLARCFNV-------------LRENNGLKA----D 88
+ Q + + L + + SL A+ V LR+ KA D
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK---AKAPSGLD 403
Query: 89 KKKLIPFRDSKLT------QI---FQRSLSGLSSTVKMI--------VNVNAS----PAY 127
+ + IPF + KL + F L L +I V+ NA P Y
Sbjct: 404 QSR-IPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 128 AEET-VQYRV-------KIIDSVRSYRV---------PNHAL 152
RV +I+D + V H L
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 29.2 bits (65), Expect = 0.59
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 30/93 (32%)
Query: 75 CFNVLRENNGLKADKK----------------KLIPFRDS-KLTQIFQRSL--------- 108
F L+ + AD ++ ++ +F R +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV--VFYRGMTMQVAVPRD 1800
Query: 109 SGLSSTVKMI-VNVNA-SPAYAEETVQYRVKII 139
S MI +N + ++++E +QY V+ +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 3e-04
Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 45/146 (30%)
Query: 5 RWSEVFRERIIAEVILLLFQV-DPGSEELIVMSSFDI-C------------DLAGAERQK 50
+ + + +L+L V + ++F++ C D A
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAK-----AWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 51 RAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIPF---------RD---- 97
H S D T + +L + + L + P RD
Sbjct: 288 --HISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 98 ---------SKLTQIFQRSLSGLSST 114
KLT I + SL+ L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPA 369
Score = 27.9 bits (61), Expect = 1.6
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 36/116 (31%)
Query: 2 FDFRWSEVFRERIIAEVILLLFQVDPGSEELIVMSSFD-ICDLAGAERQKRAH-TSGDRL 59
DFR+ ++I + + S + + L + + + D
Sbjct: 498 LDFRF---LEQKIRHD----------STAWNASGSILNTLQQL----KFYKPYICDNDPK 540
Query: 60 REARTINSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTV 115
E R +N+ L L + E N + SK T + + +L +
Sbjct: 541 YE-RLVNAILDFLPKI-----EENLIC-----------SKYTDLLRIALMAEDEAI 579
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.005
Identities = 7/30 (23%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 105 QRSLSGLSSTVKMIVNVNASPAYA-EETVQ 133
+++L L +++K+ + +++PA A + T++
Sbjct: 19 KQALKKLQASLKLYAD-DSAPALAIKATME 47
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 25.3 bits (56), Expect = 9.2
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 109 SGLSSTVKMIVNVNASPAYAEETVQYRVKIIDS 141
SG+S T +++ A V DS
Sbjct: 124 SGISGTF------SSAAAADSMVDNIDVYPFDS 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.381
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,314,212
Number of extensions: 128148
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 38
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)