RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16999
(154 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 83.1 bits (204), Expect = 3e-20
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 36 SSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRE-----NNGLKADKK 90
S + DLAG+ER G RL+E IN SL L + + L E N K K
Sbjct: 239 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 298
Query: 91 KLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+RDS LT + + +L G S T M+ ++ + +ET+
Sbjct: 299 DFIPYRDSVLTWLLRENLGGNSRTA-MVAALSPADINYDETLS 340
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 80.7 bits (198), Expect = 2e-19
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLR-EARTINSSLHVLARCFNVLRENNGLKADKKKLI 93
F + DLAG ER ++ + R E IN SL L C L K
Sbjct: 258 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL-------GQNKAHT 310
Query: 94 PFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
PFR+SKLTQ+ + S G +S MI ++ + E T+
Sbjct: 311 PFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLN 350
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 80.4 bits (197), Expect = 3e-19
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 35 MSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKLIP 94
+ ++ DLAG+ER + GDRLRE + IN SL L + L + + K+ IP
Sbjct: 235 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----TKRHIP 290
Query: 95 FRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
FR+SKLT + Q SL+G S T+ M VN++ S ++ ET+
Sbjct: 291 FRNSKLTYLLQYSLTGDSKTL-MFVNISPSSSHINETLN 328
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 80.3 bits (197), Expect = 3e-19
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 13 RIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVL 72
R + ++ + Q + +E+ + + DLAG+E+ + G L EA+ IN SL L
Sbjct: 201 RSHSIFLINVKQENTQTEQ-KLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 259
Query: 73 ARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETV 132
+ L A+ +P+RDSK+T+I Q SL G T +++ + S ET
Sbjct: 260 GNVISAL-------AEGSTYVPYRDSKMTRILQDSLGGNCRTT-IVICCSPSSYNESETK 311
Query: 133 Q-----YRVKII 139
R K I
Sbjct: 312 STLLFGQRAKTI 323
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 78.9 bits (193), Expect = 9e-19
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 6 WSEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTI 65
+ R + V + + + EEL+ + ++ DLAG+E R+ R REA I
Sbjct: 212 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 271
Query: 66 NSSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASP 125
N SL L R L ++ +P+R+SKLT+I Q SL G + T +I ++ +
Sbjct: 272 NQSLLTLGRVITAL-------VERTPHVPYRESKLTRILQDSLGGRTRTS-IIATISPAS 323
Query: 126 AYAEETVQ 133
EET+
Sbjct: 324 LNLEETLS 331
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 73.9 bits (180), Expect = 6e-17
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 28 GSEELIVMSSFDICDLAGAERQKRAHTSGD-RLREARTINSSLHVLARCFNVLRENNGLK 86
+ + DLAG+ER + + IN SL L C +
Sbjct: 222 DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----- 276
Query: 87 ADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
K IPFRDS+LT++ + G S ++ MI N++ + + E+T+
Sbjct: 277 --DKNHIPFRDSELTKVLRDIFVGKSKSI-MIANISPTISCCEQTLN 320
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 72.6 bits (177), Expect = 2e-16
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 28 GSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKA 87
++ I + S ++ DLAG+E K + R+ E + IN SL L L
Sbjct: 264 AEKQEISVGSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILAL-------L 312
Query: 88 DKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
K+ IP+R+SKLT + SL G S T+ M +NV+ +E+V+
Sbjct: 313 QKQDHIPYRNSKLTHLLMPSLGGNSKTL-MFINVSPFQDCFQESVK 357
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 72.3 bits (176), Expect = 2e-16
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Query: 7 SEVFRERIIAEVILLLFQVDPGSEELIVMSSFDICDLAGAERQKRAHTSGDRLREARTIN 66
E R I + + V+ GS + DLAG+E+ + SG L EA+ IN
Sbjct: 202 QESSRSHSIFVITITQKNVETGS---AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKIN 258
Query: 67 SSLHVLARCFNVLRENNGLKADKKKLIPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPA 126
SL L N L + K +P+RDSKLT+I Q SL G S T +I+N + S
Sbjct: 259 KSLSALGMVINALTDG------KSSHVPYRDSKLTRILQESLGGNSRTT-LIINCSPSSY 311
Query: 127 YAEETVQ 133
ET+
Sbjct: 312 NDAETLS 318
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 65.4 bits (158), Expect = 6e-14
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 33 IVMSSFDICDLAGAERQKRAHTSGDRLREARTINSSLHVLARCFNVLRENNGLKADKKKL 92
I DLAG+ER K++ ++G++L+EA++IN SL L + L + +
Sbjct: 219 IARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL-------SSGNQH 271
Query: 93 IPFRDSKLTQIFQRSLSGLSSTVKMIVNVNASPAYAEETVQ 133
IP+R+ KLT + SL G + T+ M VN++ + + +ET
Sbjct: 272 IPYRNHKLTMLMSDSLGGNAKTL-MFVNISPAESNLDETHN 311
>d1m3ya2 b.121.2.3 (A:222-437) Major capsid protein vp54 {Paramecium
bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Length = 216
Score = 25.7 bits (55), Expect = 2.6
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 64 TINSSLHVLARCFNVLRENNGL 85
T+ ++L++ A+ +NVLR +G+
Sbjct: 188 TLLTALNIYAKNYNVLRIMSGM 209
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
(SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Length = 217
Score = 25.0 bits (54), Expect = 4.2
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 18 VILLLFQVDPGSEELIVMSSFDICDLAGAE----------RQKRAHTSGDRLREARTINS 67
VIL V GSE + + +GA+ H +G+ + E R +
Sbjct: 6 VILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLI 65
Query: 68 SLHVLAR 74
+ R
Sbjct: 66 EAARITR 72
>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 201
Score = 24.3 bits (53), Expect = 6.1
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 2 FDFRWSEVFRERI 14
+F W++ R RI
Sbjct: 154 SEFGWADFLRRRI 166
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 23.3 bits (50), Expect = 9.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 123 ASPAYAEETVQYRVKIIDSVRSYRVPNHALLL 154
A+ A E + V++ S S+ +P + +L
Sbjct: 4 ATNTNARENTPFTVRLSRSGTSFEIPANRSIL 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.381
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,169
Number of extensions: 21986
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 14
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.4 bits)