Query psy170
Match_columns 84
No_of_seqs 153 out of 1138
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 19:11:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02715 amido_AtzE amidohydr 99.8 3.7E-21 8E-26 136.1 8.6 75 2-83 11-85 (452)
2 PRK07042 amidase; Provisional 99.8 4.2E-21 9.1E-26 136.2 8.7 75 2-83 18-92 (464)
3 PRK09201 amidase; Provisional 99.8 5E-21 1.1E-25 135.9 8.9 75 2-83 18-92 (465)
4 PRK06169 putative amidase; Pro 99.8 5.8E-21 1.3E-25 135.5 8.6 75 2-83 18-92 (466)
5 PRK07487 amidase; Provisional 99.8 9.8E-21 2.1E-25 134.5 8.9 75 2-83 19-93 (469)
6 PRK06170 amidase; Provisional 99.8 2.3E-20 5E-25 133.1 8.9 74 2-83 23-96 (490)
7 PRK07056 amidase; Provisional 99.8 3E-20 6.5E-25 131.6 8.5 75 2-83 17-92 (454)
8 PRK00012 gatA aspartyl/glutamy 99.8 3.7E-20 8E-25 131.2 8.7 75 1-83 2-76 (459)
9 PRK06102 hypothetical protein; 99.8 3.9E-20 8.5E-25 131.0 8.8 74 2-83 17-90 (452)
10 PRK06061 amidase; Provisional 99.8 5.6E-20 1.2E-24 131.1 8.4 74 2-83 29-102 (483)
11 PRK12470 amidase; Provisional 99.8 7.4E-20 1.6E-24 129.9 8.8 74 2-83 20-93 (462)
12 PRK07486 amidase; Provisional 99.8 7.5E-20 1.6E-24 130.4 8.6 75 2-83 23-98 (484)
13 PF01425 Amidase: Amidase; In 99.8 3.4E-20 7.3E-25 128.1 5.2 68 9-83 1-68 (441)
14 PRK08137 amidase; Provisional 99.8 1.4E-19 3E-24 129.4 7.9 74 2-83 17-94 (497)
15 TIGR00132 gatA glutamyl-tRNA(G 99.8 2.5E-19 5.4E-24 127.0 7.8 70 2-83 7-76 (460)
16 PRK07869 amidase; Provisional 99.8 2.2E-19 4.7E-24 127.5 7.0 69 2-83 26-94 (468)
17 COG0154 GatA Asp-tRNAAsn/Glu-t 99.8 3.1E-19 6.7E-24 127.3 7.5 75 2-83 18-94 (475)
18 PRK06565 amidase; Validated 99.8 5.4E-19 1.2E-23 127.9 8.3 74 2-83 18-96 (566)
19 PRK06828 amidase; Provisional 99.8 5.5E-19 1.2E-23 126.4 8.0 74 2-83 24-101 (491)
20 PRK07488 indole acetimide hydr 99.8 8.8E-19 1.9E-23 124.6 8.5 73 2-83 22-94 (472)
21 PRK11910 amidase; Provisional 99.8 8.8E-19 1.9E-23 127.7 8.0 72 2-83 176-250 (615)
22 PRK06707 amidase; Provisional 99.8 1.5E-18 3.3E-23 125.2 8.2 73 2-83 82-158 (536)
23 PRK06529 amidase; Provisional 99.8 1.4E-18 3.1E-23 123.8 7.1 69 2-83 15-84 (482)
24 PRK05962 amidase; Validated 99.7 6.6E-18 1.4E-22 118.9 7.1 65 12-83 2-66 (424)
25 PRK08186 allophanate hydrolase 99.7 7.2E-18 1.6E-22 123.0 7.2 71 2-83 18-89 (600)
26 KOG1212|consensus 99.6 6.7E-15 1.5E-19 106.1 5.9 75 2-83 66-140 (560)
27 PRK07235 amidase; Provisional 99.5 1.7E-14 3.8E-19 103.6 2.4 74 2-83 35-108 (502)
28 KOG1211|consensus 99.4 1.2E-12 2.6E-17 93.8 6.0 74 2-83 29-103 (506)
29 TIGR02713 allophanate_hyd allo 99.3 1.2E-12 2.7E-17 95.2 5.3 50 26-83 2-52 (561)
30 PRK07139 amidase; Provisional 98.9 1.1E-09 2.5E-14 77.7 4.7 53 8-83 5-57 (439)
31 PRK08310 amidase; Provisional 98.7 1E-08 2.2E-13 72.0 2.1 24 60-83 23-46 (395)
32 PLN02722 indole-3-acetamide am 98.7 1.2E-08 2.6E-13 72.3 2.1 24 60-83 24-47 (422)
33 PRK12333 nucleoside triphospha 70.7 9.4 0.0002 25.1 3.9 24 2-25 72-95 (204)
34 PRK09562 mazG nucleoside triph 69.0 13 0.00027 25.3 4.4 25 2-26 81-105 (262)
35 TIGR00444 mazG MazG family pro 66.8 19 0.00042 24.3 4.8 25 2-26 67-91 (248)
36 PF11290 DUF3090: Protein of u 60.3 18 0.00039 23.2 3.6 34 29-69 132-165 (171)
37 TIGR03847 conserved hypothetic 58.1 22 0.00047 23.0 3.6 40 29-75 134-173 (177)
38 PRK14717 putative glycine/sarc 57.3 4.2 9.1E-05 23.9 0.3 12 60-71 48-59 (107)
39 PF04723 GRDA: Glycine reducta 44.7 41 0.00088 21.0 3.2 13 60-72 96-108 (150)
40 PRK13265 glycine/sarcosine/bet 39.3 12 0.00026 23.4 0.3 12 60-71 97-108 (154)
41 PF10559 Plug_translocon: Plug 35.6 6.5 0.00014 18.4 -1.0 15 61-75 9-24 (35)
42 cd00363 PFK Phosphofructokinas 31.6 1.8E+02 0.004 20.4 6.4 58 8-74 78-135 (338)
43 PF08898 DUF1843: Domain of un 30.8 12 0.00025 19.4 -0.6 7 62-68 1-7 (53)
44 KOG2094|consensus 29.5 1.9E+02 0.0041 21.3 5.0 48 9-71 86-133 (490)
45 COG3933 Transcriptional antite 26.7 2.2E+02 0.0048 21.3 5.1 55 4-76 145-200 (470)
46 PF08383 Maf_N: Maf N-terminal 25.9 64 0.0014 15.2 1.5 12 4-15 22-33 (35)
47 PTZ00205 DNA polymerase kappa; 25.4 1.3E+02 0.0028 23.0 3.8 46 10-71 118-163 (571)
48 PF13085 Fer2_3: 2Fe-2S iron-s 23.6 32 0.0007 20.3 0.4 13 61-74 90-102 (110)
49 PF09884 DUF2111: Uncharacteri 21.4 44 0.00096 18.9 0.6 12 60-71 53-64 (84)
50 smart00481 POLIIIAc DNA polyme 21.3 1.3E+02 0.0029 15.2 4.3 13 60-72 55-67 (67)
51 PF01193 RNA_pol_L: RNA polyme 20.8 1.4E+02 0.0031 15.4 2.8 19 2-20 45-63 (66)
No 1
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=99.85 E-value=3.7e-21 Score=136.13 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=70.8
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+.+.+++|+++|+++|++++.+.. .|||+||||+|||||+++|++|
T Consensus 11 ~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPv~vKD~~~v~G~~t 83 (452)
T TIGR02715 11 SGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSP-------LGPLAGVPFAVKNLFDVAGLTT 83 (452)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeEEEEeccccCCcee
Confidence 689999999999999999999999999999999999999999998888764 6999999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 84 t~ 85 (452)
T TIGR02715 84 LA 85 (452)
T ss_pred Cc
Confidence 86
No 2
>PRK07042 amidase; Provisional
Probab=99.85 E-value=4.2e-21 Score=136.20 Aligned_cols=75 Identities=27% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++++++++++||++.++.+|+|+.++.+.|+++|+++|++++.+.. .|||+||||+|||||+++|++|
T Consensus 18 ~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t 90 (464)
T PRK07042 18 ARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEP-------LGPLDGVPVTIKENIATRGVPV 90 (464)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCC-------CCCcCCCEEEEEcccccCCccc
Confidence 689999999999999999999999999999999999999999998887764 7999999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 91 t~ 92 (464)
T PRK07042 91 PL 92 (464)
T ss_pred CC
Confidence 96
No 3
>PRK09201 amidase; Provisional
Probab=99.85 E-value=5e-21 Score=135.89 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=70.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+.+..+.|+++|+++|.+++.+.. .|||+||||+|||||+++|++|
T Consensus 18 ~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t 90 (465)
T PRK09201 18 AGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEP-------LGPLAGVPFAVKNLFDVAGLTT 90 (465)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCC-------CCCcCCceEEEEeccccCCccc
Confidence 689999999999999999999999999999999999999999998887764 7999999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 91 t~ 92 (465)
T PRK09201 91 LA 92 (465)
T ss_pred Cc
Confidence 96
No 4
>PRK06169 putative amidase; Provisional
Probab=99.84 E-value=5.8e-21 Score=135.53 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=70.6
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|+.|+++++++||++.++.+|+|+.++.+.|+++|+++|++++.+.. .|||+||||+|||||+++|++|
T Consensus 18 ~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t 90 (466)
T PRK06169 18 RGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEP-------CGLLDGVPVSIKDIFLTRGWPT 90 (466)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCC-------CCCcCCceEEEecccccCCccc
Confidence 689999999999999999999999999999999999999999998887754 6999999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 91 t~ 92 (466)
T PRK06169 91 LR 92 (466)
T ss_pred Cc
Confidence 86
No 5
>PRK07487 amidase; Provisional
Probab=99.84 E-value=9.8e-21 Score=134.50 Aligned_cols=75 Identities=32% Similarity=0.480 Sum_probs=70.5
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+.+++++|+++|+++|++++.+.. .|||+||||+|||+|+++|+||
T Consensus 19 ~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t 91 (469)
T PRK07487 19 SRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD-------PGPLAGVPVTVKVNVDQAGFAT 91 (469)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCC-------CCCcCCCEEEEecccccCCCcc
Confidence 689999999999999999999999999999999999999999988877754 6899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 92 t~ 93 (469)
T PRK07487 92 TN 93 (469)
T ss_pred Cc
Confidence 96
No 6
>PRK06170 amidase; Provisional
Probab=99.83 E-value=2.3e-20 Score=133.11 Aligned_cols=74 Identities=28% Similarity=0.348 Sum_probs=69.5
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+.++.++|+++|+++|.++..+ . .|||+||||+|||+|+++|++|
T Consensus 23 ~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~-------~gpL~GvPv~VKD~~~v~G~~t 94 (490)
T PRK06170 23 AGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-E-------RGPLLGIPVTVKESFNVAGLPT 94 (490)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-C-------CCCcCCceEEEecccccCCccc
Confidence 6899999999999999999999999999999999999999999988776 2 5899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 95 t~ 96 (490)
T PRK06170 95 TW 96 (490)
T ss_pred CC
Confidence 96
No 7
>PRK07056 amidase; Provisional
Probab=99.83 E-value=3e-20 Score=131.61 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCccCHHHHHHHHHHHHHHhCC-CcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNP-YLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARG 80 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~-~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~ 80 (84)
+|++|++|+++++++||++.++ .+|+|+.++.+.++++|+++|++++.+.. .|||+||||+|||||+++|++
T Consensus 17 ~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~ 89 (454)
T PRK07056 17 AGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAA-------PSPLAGIPVSVKDLFDVAGQV 89 (454)
T ss_pred cCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCC-------CCCcCCCeEEEEeeeccCCCc
Confidence 6899999999999999999886 49999999999999999999998887764 699999999999999999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 90 tt~ 92 (454)
T PRK07056 90 TRA 92 (454)
T ss_pred cCC
Confidence 986
No 8
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=99.82 E-value=3.7e-20 Score=131.15 Aligned_cols=75 Identities=32% Similarity=0.491 Sum_probs=69.6
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcc
Q psy170 1 MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARG 80 (84)
Q Consensus 1 ~~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~ 80 (84)
.+|++|++|+++++++||++.++.+|+|+.++.+.++++|+++|.+++.+. .|||+||||+|||||+++|++
T Consensus 2 ~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~--------~gpL~GvPv~vKD~~~v~G~~ 73 (459)
T PRK00012 2 KNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE--------AGPLAGIPIAIKDNICTKGIR 73 (459)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC--------CCccCCeEEEEecccccCCCc
Confidence 368999999999999999999999999999999999999999998877653 489999999999999999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 74 tt~ 76 (459)
T PRK00012 74 TTC 76 (459)
T ss_pred cCc
Confidence 986
No 9
>PRK06102 hypothetical protein; Provisional
Probab=99.82 E-value=3.9e-20 Score=130.96 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=68.8
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|+.|+++++++||++.++ +|+|+.+.++.|+++|+++|+++..+.. .|||+||||+|||||+++|+||
T Consensus 17 ~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t 88 (452)
T PRK06102 17 SGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRS-------LGLLDGIPIAWKDLFDVAGSVT 88 (452)
T ss_pred cCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeEEEEeccccCCCcc
Confidence 6899999999999999998885 8999999999999999999998887764 7899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 89 t~ 90 (452)
T PRK06102 89 TA 90 (452)
T ss_pred Cc
Confidence 86
No 10
>PRK06061 amidase; Provisional
Probab=99.82 E-value=5.6e-20 Score=131.08 Aligned_cols=74 Identities=32% Similarity=0.402 Sum_probs=69.1
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+.+..+.++++|+++|++++.+.. +||+||||+|||||+++|++|
T Consensus 29 ~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~--------~pL~GvPv~vKD~~~v~G~~t 100 (483)
T PRK06061 29 SGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDR--------LPLLGVPIAVKDDVDVAGVPT 100 (483)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCC--------CCcCCCeEEEEcccccCCcee
Confidence 689999999999999999999999999999999999999999998887652 599999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 101 t~ 102 (483)
T PRK06061 101 AF 102 (483)
T ss_pred cC
Confidence 96
No 11
>PRK12470 amidase; Provisional
Probab=99.82 E-value=7.4e-20 Score=129.89 Aligned_cols=74 Identities=28% Similarity=0.373 Sum_probs=69.4
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|+.|+++++++||++.++.+|+|+.+..+.++++|+++|+++..+.+ . ||+||||+|||||+++|+||
T Consensus 20 ~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~-------~-pL~GvPi~vKD~~~v~G~~t 91 (462)
T PRK12470 20 DGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGER-------L-PLLGVPIAIKDDVDVAGEVT 91 (462)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCC-------C-CcCCCeEEEecCcccCCcee
Confidence 689999999999999999999999999999999999999999998887754 5 99999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 92 t~ 93 (462)
T PRK12470 92 TY 93 (462)
T ss_pred CC
Confidence 96
No 12
>PRK07486 amidase; Provisional
Probab=99.81 E-value=7.5e-20 Score=130.38 Aligned_cols=75 Identities=32% Similarity=0.340 Sum_probs=68.6
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCH-HHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERY-AEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARG 80 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~-~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~ 80 (84)
+|++|++|+++++++||++.++.+|+|+.+.. +.++++|+++|+++..+.. .|||+||||+|||||+++|++
T Consensus 23 ~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~ 95 (484)
T PRK07486 23 RRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEY-------RGWLHGMPQAPKDLAPTKGIR 95 (484)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCC-------CCCcCCCeEEEecccccCCcC
Confidence 68999999999999999999999999999976 4468999999998888764 689999999999999999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 96 tt~ 98 (484)
T PRK07486 96 TTL 98 (484)
T ss_pred ccc
Confidence 986
No 13
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=99.81 E-value=3.4e-20 Score=128.08 Aligned_cols=68 Identities=34% Similarity=0.546 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcccCC
Q psy170 9 QVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFD 83 (84)
Q Consensus 9 ~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~tt~ 83 (84)
||+++|++||++.++.+|||+.+..++|+++|+++|++++.+.. .+||+||||+|||||+++|++||+
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~-------~~pL~Gip~~vKD~~~~~g~~tt~ 68 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKP-------RGPLHGIPISVKDNIDVAGLPTTA 68 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSS-------SSTTTT-EEEEETTBSBTTSBB-T
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCC-------CCCCCCCceecccccccccccccc
Confidence 78999999999999999999999999999999999999887764 799999999999999999999986
No 14
>PRK08137 amidase; Provisional
Probab=99.80 E-value=1.4e-19 Score=129.36 Aligned_cols=74 Identities=28% Similarity=0.393 Sum_probs=67.6
Q ss_pred CCccCHHHHHHHHHHHHHHh---CCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCcccc-
Q psy170 2 RIKVTSEQVVRAYILRCRDV---NPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALK- 77 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~---~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~- 77 (84)
+|++|++|+++++++||++. ++.+|+|+.+..+ |+++|+++|++++.+.. .|||+||||+|||||+++
T Consensus 17 ~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~~ 88 (497)
T PRK08137 17 AGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKV-------RGPLHGIPVLLKDNIDAAD 88 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCC-------CCCcCCceeeeecceeecC
Confidence 68999999999999999987 5689999999875 99999999998887764 689999999999999999
Q ss_pred CcccCC
Q psy170 78 ARGSFD 83 (84)
Q Consensus 78 G~~tt~ 83 (84)
|++||+
T Consensus 89 G~~tt~ 94 (497)
T PRK08137 89 PMPTTA 94 (497)
T ss_pred CCCcCc
Confidence 999996
No 15
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=99.79 E-value=2.5e-19 Score=126.98 Aligned_cols=70 Identities=26% Similarity=0.408 Sum_probs=64.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++++++++++||++.++.+|+|+.++.+.++++|+++|+++ .|||+||||+|||||+++|++|
T Consensus 7 ~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~------------~gpL~GvPv~vKD~~~v~G~~t 74 (460)
T TIGR00132 7 KKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAI------------LTPLAGIPIAVKDNISTKGIVT 74 (460)
T ss_pred cCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhc------------cCCcCCcEEEEecccccCCccc
Confidence 6899999999999999999999999999999999999999988642 2789999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 75 t~ 76 (460)
T TIGR00132 75 TC 76 (460)
T ss_pred Cc
Confidence 86
No 16
>PRK07869 amidase; Provisional
Probab=99.79 E-value=2.2e-19 Score=127.54 Aligned_cols=69 Identities=28% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+.+..+.|+++|++++. . .|||+||||+|||||+++|++|
T Consensus 26 ~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~------~-------~gpL~GvPi~vKD~~~v~G~~t 92 (468)
T PRK07869 26 AGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGS------Q-------GGFFSGVPTFIKDNVDVAGLPT 92 (468)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCC------C-------CCCcCCCeEEEecCcccCCccc
Confidence 68999999999999999999999999999999999999987751 1 5899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 93 t~ 94 (468)
T PRK07869 93 MH 94 (468)
T ss_pred Cc
Confidence 96
No 17
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.1e-19 Score=127.25 Aligned_cols=75 Identities=33% Similarity=0.448 Sum_probs=69.5
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHH--HHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIR--EAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKAR 79 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~--~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~ 79 (84)
.+++|+.|+++++++||++.++.+|+|+.+..+.++. +|+.+|+++..+.. .|||+||||+|||||+++|+
T Consensus 18 ~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~-------~gpL~GvPiavKDn~~~~G~ 90 (475)
T COG0154 18 AKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEP-------LGPLAGVPIAVKDNIDTAGL 90 (475)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCC-------CCCcCCceEEEeeccccCCC
Confidence 5789999999999999999999999999999988755 99999999988854 79999999999999999999
Q ss_pred ccCC
Q psy170 80 GSFD 83 (84)
Q Consensus 80 ~tt~ 83 (84)
|||+
T Consensus 91 ~Tt~ 94 (475)
T COG0154 91 PTTA 94 (475)
T ss_pred ccCc
Confidence 9997
No 18
>PRK06565 amidase; Validated
Probab=99.78 E-value=5.4e-19 Score=127.85 Aligned_cols=74 Identities=31% Similarity=0.380 Sum_probs=67.7
Q ss_pred CCccCHHHHHHHHHHHHHHhC-----CCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVN-----PYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIAL 76 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~-----~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~ 76 (84)
+|++|++|++++|++||++.+ +.+|+|+.++.+ |+++|+++|.+++.+.. .|||+||||+|||||++
T Consensus 18 ~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~-------~gpL~GIPi~vKD~~~v 89 (566)
T PRK06565 18 SGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGET-------LGPLDGIPYTAKDSYLV 89 (566)
T ss_pred cCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCC-------CCCCCCCEEEEeccccc
Confidence 689999999999999999998 589999998875 99999999998877764 68999999999999999
Q ss_pred cCcccCC
Q psy170 77 KARGSFD 83 (84)
Q Consensus 77 ~G~~tt~ 83 (84)
+|++||+
T Consensus 90 ~G~~TT~ 96 (566)
T PRK06565 90 KGLTAAS 96 (566)
T ss_pred CCCCccc
Confidence 9999986
No 19
>PRK06828 amidase; Provisional
Probab=99.78 E-value=5.5e-19 Score=126.37 Aligned_cols=74 Identities=30% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCccCHHHHHHHHHHHHHHhC---CCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccC
Q psy170 2 RIKVTSEQVVRAYILRCRDVN---PYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKA 78 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~---~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G 78 (84)
+|++|+++++++|++||++.+ +.+|+|+.++.+ ++++|+++|.+++.+.. .|||+||||+|||||+++|
T Consensus 24 ~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~-------~gpL~GvPv~vKD~~~v~g 95 (491)
T PRK06828 24 DGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGV-------RGPLHGIPVLLKDNIETND 95 (491)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCC-------CCCccCceeeeeeeEEecC
Confidence 689999999999999999998 479999999987 89999999988877754 6899999999999999996
Q ss_pred -cccCC
Q psy170 79 -RGSFD 83 (84)
Q Consensus 79 -~~tt~ 83 (84)
+|||+
T Consensus 96 g~~tt~ 101 (491)
T PRK06828 96 SMHTSA 101 (491)
T ss_pred CCcCCc
Confidence 99986
No 20
>PRK07488 indole acetimide hydrolase; Validated
Probab=99.78 E-value=8.8e-19 Score=124.59 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=66.7
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++++++++++||++.+ .+|+|+.+..++++++|+++|++++.+.. .+ |+||||+|||||+++|++|
T Consensus 22 ~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~g-L~GvPi~vKD~~~v~G~~t 92 (472)
T PRK07488 22 SGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAA-------LL-LAGVPIVIKDNINTAGMPT 92 (472)
T ss_pred cCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCC-------CC-cCceEEEEEcccccCCCcc
Confidence 689999999999999999875 69999999999999999999988877653 56 9999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 93 t~ 94 (472)
T PRK07488 93 TA 94 (472)
T ss_pred Cc
Confidence 86
No 21
>PRK11910 amidase; Provisional
Probab=99.78 E-value=8.8e-19 Score=127.66 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=65.0
Q ss_pred CCccCHHHHHHHHHHHHHHhCC---CcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccC
Q psy170 2 RIKVTSEQVVRAYILRCRDVNP---YLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKA 78 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~---~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G 78 (84)
+|++|+++++++|++||++.++ .+|+|+.++++ |+++|+++|.++..+ .|||+||||+|||||+++|
T Consensus 176 ~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~---------~gPL~GIPv~VKDni~t~G 245 (615)
T PRK11910 176 TKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTN---------KSALYGMPVLLKDNIGTKE 245 (615)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccC---------CCCcCCCEEEEEcCcccCC
Confidence 5899999999999999999987 79999999985 899999999765443 4899999999999999999
Q ss_pred cccCC
Q psy170 79 RGSFD 83 (84)
Q Consensus 79 ~~tt~ 83 (84)
++||+
T Consensus 246 ~pTTa 250 (615)
T PRK11910 246 LPTSA 250 (615)
T ss_pred CccCc
Confidence 99986
No 22
>PRK06707 amidase; Provisional
Probab=99.77 E-value=1.5e-18 Score=125.16 Aligned_cols=73 Identities=23% Similarity=0.371 Sum_probs=65.7
Q ss_pred CCccCHHHHHHHHHHHHHHhC---CCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccc-c
Q psy170 2 RIKVTSEQVVRAYILRCRDVN---PYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIAL-K 77 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~---~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~-~ 77 (84)
+|++|++|+++.|++||++.+ +.+|+|+.++.+ ++++|+++|.+++.+. .+||+||||+|||||++ +
T Consensus 82 ~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~--------~~pL~GiPi~vKD~i~~~~ 152 (536)
T PRK06707 82 DGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNK--------KSNLYGIPVVVKDNVQTAK 152 (536)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCC--------CCCcCCCeEEEecccccCC
Confidence 689999999999999999988 469999999886 9999999998776653 47999999999999999 9
Q ss_pred CcccCC
Q psy170 78 ARGSFD 83 (84)
Q Consensus 78 G~~tt~ 83 (84)
|+|||+
T Consensus 153 g~~Tta 158 (536)
T PRK06707 153 VMPTSA 158 (536)
T ss_pred CCccCc
Confidence 999986
No 23
>PRK06529 amidase; Provisional
Probab=99.76 E-value=1.4e-18 Score=123.79 Aligned_cols=69 Identities=42% Similarity=0.557 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecC-ccccCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGS-IALKARG 80 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~-i~~~G~~ 80 (84)
+|++|+.|+++++++||++.++.+|+|+.++.++|+++|+++|.. .+||+||||+|||| |+++|++
T Consensus 15 ~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~-------------~~PL~GvPi~vKD~~~~v~G~~ 81 (482)
T PRK06529 15 QGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS-------------GKPFAGVPIFLKDLGQELKGQL 81 (482)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhcccc-------------CCCcCCCeEEEecCCcccCCCc
Confidence 689999999999999999999999999999999999999887741 25899999999998 7999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 82 tt~ 84 (482)
T PRK06529 82 STS 84 (482)
T ss_pred cCc
Confidence 996
No 24
>PRK05962 amidase; Validated
Probab=99.73 E-value=6.6e-18 Score=118.88 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcccCC
Q psy170 12 RAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFD 83 (84)
Q Consensus 12 ~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~tt~ 83 (84)
+++++||++.++.+|+|+.+..+.|+++|+++|++++.+.. .|||+||||+|||||+++|+|||+
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~tt~ 66 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRS-------LGPLDGRIVSIKDLFDVAGEPTLA 66 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCC-------CCCCCCCEEEEEeeeecCCcccCC
Confidence 67899999999999999999999999999999998887764 799999999999999999999996
No 25
>PRK08186 allophanate hydrolase; Provisional
Probab=99.73 E-value=7.2e-18 Score=122.96 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCH-HHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERY-AEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARG 80 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~-~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~ 80 (84)
+|++|+.|+++++++||++ ++.+|+|+.+.. ++++++|+++|+++. . .+||+||||+|||||+++|+|
T Consensus 18 ~g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~---~-------~gPL~GVP~aVKDnidvaG~p 86 (600)
T PRK08186 18 AGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDP---A-------ALPLYGVPFAVKDNIDVAGLP 86 (600)
T ss_pred cCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhcc---c-------cCCCCCCeEEeecceecCCcc
Confidence 6899999999999999998 568999999986 579999999987644 1 589999999999999999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 87 TTa 89 (600)
T PRK08186 87 TTA 89 (600)
T ss_pred cCc
Confidence 996
No 26
>KOG1212|consensus
Probab=99.55 E-value=6.7e-15 Score=106.14 Aligned_cols=75 Identities=33% Similarity=0.391 Sum_probs=65.6
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|+.+++.+|+.|+.+.|+.+||++.+.++.++..|+..|...+.... .+||+||||+|||+|.++|+.+
T Consensus 66 ~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~-------k~PL~GvP~SvKe~~~vkg~d~ 138 (560)
T KOG1212|consen 66 SGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYE-------KPPLYGVPFSVKESISVKGYDS 138 (560)
T ss_pred hCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcc-------cCCceecceehhhheeecCccc
Confidence 589999999999999999999999999999999888888777765443322 6899999999999999999988
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|.
T Consensus 139 T~ 140 (560)
T KOG1212|consen 139 TA 140 (560)
T ss_pred cc
Confidence 74
No 27
>PRK07235 amidase; Provisional
Probab=99.47 E-value=1.7e-14 Score=103.55 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
.+.+++.|+++++++++....+..+++.....+++...|...+.+ ..+.. .|||+||||+|||||+++|+||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~g~~-------~gpL~GvPiavKD~i~v~G~pt 106 (502)
T PRK07235 35 QASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTS-IKGAA-------EGKLAGKTVALKDNVAVAGVPM 106 (502)
T ss_pred HhccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhc-cCCCC-------CCCcCCceEEEecccccCCccc
Confidence 367899999999999999999999999999888887777776655 34443 6899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 107 t~ 108 (502)
T PRK07235 107 MN 108 (502)
T ss_pred Cc
Confidence 96
No 28
>KOG1211|consensus
Probab=99.37 E-value=1.2e-12 Score=93.77 Aligned_cols=74 Identities=27% Similarity=0.390 Sum_probs=61.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|.+++.++++.+++++..+.+..+.+..+ .++++.+|+..+.+.+.+.+ .+||+||||+|||||+++|++|
T Consensus 29 ~~~l~~~~~ie~~l~~~~~~~~~~~~i~~~-~~~~~~~a~~~~~~~~~~~~-------~~~L~Gv~i~IKDnf~tk~~~t 100 (506)
T KOG1211|consen 29 SGLLTSKRIIESYLERINKWKPLNAKITVI-NEEALKQAEEVTRRRKNGME-------KGPLQGVPIAIKDNFDTKDKPT 100 (506)
T ss_pred ccccchHHHHHHHHHHHhhcccccceeeec-cHHHHHHhhhccccccCCCc-------CCCcCCceEEEeeceecCCccC
Confidence 578899999999999999987655555544 45799999999877666654 7899999999999999999999
Q ss_pred -CC
Q psy170 82 -FD 83 (84)
Q Consensus 82 -t~ 83 (84)
||
T Consensus 101 ~t~ 103 (506)
T KOG1211|consen 101 TTA 103 (506)
T ss_pred Cch
Confidence 54
No 29
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=99.35 E-value=1.2e-12 Score=95.18 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=43.5
Q ss_pred ceEEecC-HHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcccCC
Q psy170 26 NAIVEER-YAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFD 83 (84)
Q Consensus 26 na~~~~~-~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~tt~ 83 (84)
++|+++. .++++++|+++|+++..+. .+||+||||+|||||+++|+|||+
T Consensus 2 ~a~i~~~~~e~al~~A~~ld~~~~~~~--------~~PL~GvP~aVKD~idvaG~pTTa 52 (561)
T TIGR02713 2 EAWISLLSEEDLLAQAAALDARDARPE--------RLPLYGVPFAVKDNIDVAGLPTTA 52 (561)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHhcCC--------CCCccCCeEEEEcccccCCCccCc
Confidence 6888885 4789999999998876653 589999999999999999999996
No 30
>PRK07139 amidase; Provisional
Probab=98.94 E-value=1.1e-09 Score=77.71 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcccCC
Q psy170 8 EQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGSFD 83 (84)
Q Consensus 8 ~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~tt~ 83 (84)
.-+.+.++++++. ...|+++++..+.. .. .|||+||||+|||||+++|++||+
T Consensus 5 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~-------~gpL~GvPvavKD~~~v~G~~tt~ 57 (439)
T PRK07139 5 KGNFQKALEELKN--DKNNAVSYVFDEKN--------------NK-------DGPLANCVFTIKDNFATSEGPTHA 57 (439)
T ss_pred hhhHHHHHHHhhc--cccCeEEEEecccC--------------CC-------CCCcCCcEEEEEcceecCCCccCc
Confidence 3456777888764 46888887643311 11 589999999999999999999986
No 31
>PRK08310 amidase; Provisional
Probab=98.66 E-value=1e-08 Score=71.97 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCCeeeceeeeecCccccCcccCC
Q psy170 60 DTPLLGVPITIKGSIALKARGSFD 83 (84)
Q Consensus 60 ~~pL~GvPi~vKD~i~~~G~~tt~ 83 (84)
.+||+||||+|||||+++|++||+
T Consensus 23 ~gpL~GvPi~vKD~~~v~G~~tt~ 46 (395)
T PRK08310 23 SGPLAGLRFAVKDVFDVAGYVTGC 46 (395)
T ss_pred CCCcCCCeEEEeeccccCCCccCC
Confidence 689999999999999999999986
No 32
>PLN02722 indole-3-acetamide amidohydrolase
Probab=98.65 E-value=1.2e-08 Score=72.28 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCCeeeceeeeecCccccCcccCC
Q psy170 60 DTPLLGVPITIKGSIALKARGSFD 83 (84)
Q Consensus 60 ~~pL~GvPi~vKD~i~~~G~~tt~ 83 (84)
.+||+||||+|||||+++|+|||+
T Consensus 24 ~gpL~GvPiaVKD~~~v~G~~Tt~ 47 (422)
T PLN02722 24 DLPLHGLTFAVKDIFDVEGYVTGF 47 (422)
T ss_pred CCCCCCCeEEEEcccccCCCccCC
Confidence 589999999999999999999986
No 33
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=70.67 E-value=9.4 Score=25.12 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.0
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYL 25 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~ 25 (84)
.|..+-.+|++...+++-..+|++
T Consensus 72 ~g~F~~~DV~~~i~~KlirRHPHV 95 (204)
T PRK12333 72 EGRFTYPDVERGIVEKLIRRHPHV 95 (204)
T ss_pred cCCCCHHHHHHHHHHHhcccCCcc
Confidence 478899999999999999888875
No 34
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=69.02 E-value=13 Score=25.28 Aligned_cols=25 Identities=16% Similarity=-0.002 Sum_probs=20.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLN 26 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~n 26 (84)
.|.+++.++++....+.....|++-
T Consensus 81 ~~~~d~e~vl~~~~~K~~~R~p~vf 105 (262)
T PRK09562 81 QGAFDFADVVEAISDKLIRRHPHVF 105 (262)
T ss_pred cCCCCHHHHHHHHHHHHhhhchhhc
Confidence 4679999999999999988877653
No 35
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=66.78 E-value=19 Score=24.29 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=20.8
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLN 26 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~n 26 (84)
.|.+++.+++....++....+|++-
T Consensus 67 ~g~f~~edvl~~~~~K~irRhphVf 91 (248)
T TIGR00444 67 EGYFDFDDVCAGISEKLVRRHPHVF 91 (248)
T ss_pred cCCCCHHHHHHHHHHHHHhhchhhh
Confidence 3568999999999999988887654
No 36
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=60.34 E-value=18 Score=23.17 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=26.7
Q ss_pred EecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceee
Q psy170 29 VEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPIT 69 (84)
Q Consensus 29 ~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~ 69 (84)
+......|++.|+....-.+.|.+ ..||.|-|+-
T Consensus 132 v~lt~~~ARafa~ra~~VVaAGRP-------~CPlCg~PlD 165 (171)
T PF11290_consen 132 VRLTPGQARAFARRAREVVAAGRP-------PCPLCGEPLD 165 (171)
T ss_pred EEcCHHHHHHHHHHHHHHHhCCCC-------CCCCCCCCCC
Confidence 445667788888888888888876 7899999963
No 37
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=58.05 E-value=22 Score=22.95 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=29.4
Q ss_pred EecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCcc
Q psy170 29 VEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIA 75 (84)
Q Consensus 29 ~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~ 75 (84)
+......|++.|+....-.+.|.+ .+||.|-|+.=-..||
T Consensus 134 v~lt~~~ARafa~Ra~~VVaAGRP-------~CPlCg~PldP~GH~C 173 (177)
T TIGR03847 134 VRLTPGQARAFAKRARRVVAAGRP-------PCPLCGRPIDPDGHIC 173 (177)
T ss_pred EEcCHHHHHHHHHHHHHHHhCCCC-------CCCCCCCCCCCCCccC
Confidence 345667788888888888888876 7899999985333333
No 38
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=57.30 E-value=4.2 Score=23.86 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=10.6
Q ss_pred CCCeeeceeeee
Q psy170 60 DTPLLGVPITIK 71 (84)
Q Consensus 60 ~~pL~GvPi~vK 71 (84)
.|||.||+..++
T Consensus 48 AGPLaGV~LgL~ 59 (107)
T PRK14717 48 AGPLAGVQLGLP 59 (107)
T ss_pred ccccccCccCce
Confidence 589999999886
No 39
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.72 E-value=41 Score=21.00 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=11.2
Q ss_pred CCCeeeceeeeec
Q psy170 60 DTPLLGVPITIKG 72 (84)
Q Consensus 60 ~~pL~GvPi~vKD 72 (84)
.|||.|+++.+|=
T Consensus 96 aGPLAgv~LgL~v 108 (150)
T PF04723_consen 96 AGPLAGVQLGLKV 108 (150)
T ss_pred cccccccccCcee
Confidence 5899999999873
No 40
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=39.27 E-value=12 Score=23.36 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=10.6
Q ss_pred CCCeeeceeeee
Q psy170 60 DTPLLGVPITIK 71 (84)
Q Consensus 60 ~~pL~GvPi~vK 71 (84)
.|||.||+..+|
T Consensus 97 AGPLAGV~LgL~ 108 (154)
T PRK13265 97 AGPLAGVQLGLR 108 (154)
T ss_pred cccccCCccCce
Confidence 589999999886
No 41
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=35.58 E-value=6.5 Score=18.44 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=10.3
Q ss_pred CCeeec-eeeeecCcc
Q psy170 61 TPLLGV-PITIKGSIA 75 (84)
Q Consensus 61 ~pL~Gv-Pi~vKD~i~ 75 (84)
=||+|+ +-...|.|.
T Consensus 9 ipLyG~~~~~~~D~f~ 24 (35)
T PF10559_consen 9 IPLYGLQSASSSDPFY 24 (35)
T ss_dssp SB-STSTTTTSSCCHT
T ss_pred CccccccCCCcCCHHH
Confidence 379999 777777763
No 42
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=31.62 E-value=1.8e+02 Score=20.36 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCc
Q psy170 8 EQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSI 74 (84)
Q Consensus 8 ~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i 74 (84)
.+-.+..++.+++. .+++++.+--+.....|..+.+.+.+... .-+.-|||-+|=..+
T Consensus 78 ~~~~~~~~~~l~~~--~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~-------~i~vigiPkTIDNDl 135 (338)
T cd00363 78 EEGRAKAAENLKKH--GIDALVVIGGDGSYTGADLLTEEWPSKYQ-------GFNVIGLPGTIDNDI 135 (338)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHhcCC-------CccEEEeeecccCCC
Confidence 34456667777765 48999999877888878776655433322 347899999986544
No 43
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=30.77 E-value=12 Score=19.44 Aligned_cols=7 Identities=71% Similarity=1.232 Sum_probs=5.0
Q ss_pred Ceeecee
Q psy170 62 PLLGVPI 68 (84)
Q Consensus 62 pL~GvPi 68 (84)
||+||+|
T Consensus 1 plYgvai 7 (53)
T PF08898_consen 1 PLYGVAI 7 (53)
T ss_pred CCchHHH
Confidence 5778775
No 44
>KOG2094|consensus
Probab=29.55 E-value=1.9e+02 Score=21.29 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeee
Q psy170 9 QVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIK 71 (84)
Q Consensus 9 ~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vK 71 (84)
++++...-..++.-...+.+++++-+ |.-.|-+.- +.+.|-++|++|=
T Consensus 86 ~~vd~~~meleasRdLsr~~vhvDmD-AfyAaVE~~--------------dnP~lk~~PmAVG 133 (490)
T KOG2094|consen 86 ESVDTTVMELEASRDLSRIIVHVDMD-AFYAAVEML--------------DNPKLKSKPMAVG 133 (490)
T ss_pred HHHHHHHHHHHhhccccceEEEechH-HHHHHHHhc--------------cCcccccCCcccc
Confidence 34455555555444456788899876 443332211 1345889998884
No 45
>COG3933 Transcriptional antiterminator [Transcription]
Probab=26.73 E-value=2.2e+02 Score=21.27 Aligned_cols=55 Identities=7% Similarity=0.157 Sum_probs=31.3
Q ss_pred ccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHH-HHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccc
Q psy170 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIR-EAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIAL 76 (84)
Q Consensus 4 ~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~-~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~ 76 (84)
++||.++.+..-+.+++.+...+.++-++- ..+. -+..++ -..|+|+.+=||+.+
T Consensus 145 dvsp~~vle~l~e~~k~~~~~~GlllLVDM-GSL~~f~~~i~-----------------~~~~ipv~~i~nVST 200 (470)
T COG3933 145 DVSPSDVLEKLKEYLKERDYRSGLLLLVDM-GSLTSFGSIIS-----------------EEFGIPVKVIPNVST 200 (470)
T ss_pred cCCHHHHHHHHHHHHHhcCccCceEEEEec-chHHHHHHHHH-----------------HHhCCceEEEecccH
Confidence 456666777666666666655555554443 1221 111111 257899988888765
No 46
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=25.86 E-value=64 Score=15.20 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHH
Q psy170 4 KVTSEQVVRAYI 15 (84)
Q Consensus 4 ~~s~~~v~~~~l 15 (84)
.+||++.+++.+
T Consensus 22 ~LtpEDAvEaLi 33 (35)
T PF08383_consen 22 GLTPEDAVEALI 33 (35)
T ss_pred CCCHHHHHHHHh
Confidence 378888888765
No 47
>PTZ00205 DNA polymerase kappa; Provisional
Probab=25.44 E-value=1.3e+02 Score=23.00 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeee
Q psy170 10 VVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIK 71 (84)
Q Consensus 10 v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vK 71 (84)
-++.++...+.. ..+..+++++.+.=.+..+.++ .+-|.|.|++|=
T Consensus 118 ~vd~~~~~le~~-Rdl~~I~HVDmDaFYASVE~~~---------------~PeLrgkPvaVg 163 (571)
T PTZ00205 118 KVSKIEQELEAT-RRLGTYIHLDMDMFYAAVEIKK---------------HPEYAAIPLAIG 163 (571)
T ss_pred HHHHHHHHHHhc-ccCCeEEEEecCcHhhhhhecc---------------CccccCCcEEEc
Confidence 344555555443 4455677777653322222221 345999999983
No 48
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=23.65 E-value=32 Score=20.30 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.1
Q ss_pred CCeeeceeeeecCc
Q psy170 61 TPLLGVPITIKGSI 74 (84)
Q Consensus 61 ~pL~GvPi~vKD~i 74 (84)
.||.|.|+ |||++
T Consensus 90 ePL~~fpV-irDLv 102 (110)
T PF13085_consen 90 EPLPNFPV-IRDLV 102 (110)
T ss_dssp EESTTSBE-EETTE
T ss_pred EECCCCCc-ceeCc
Confidence 58888887 78875
No 49
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=21.36 E-value=44 Score=18.92 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=10.0
Q ss_pred CCCeeeceeeee
Q psy170 60 DTPLLGVPITIK 71 (84)
Q Consensus 60 ~~pL~GvPi~vK 71 (84)
.||..|+|+.|=
T Consensus 53 ~G~Y~G~PViV~ 64 (84)
T PF09884_consen 53 EGPYKGVPVIVA 64 (84)
T ss_pred CcccCCeeEEEE
Confidence 689999999863
No 50
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.27 E-value=1.3e+02 Score=15.21 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=9.8
Q ss_pred CCCeeeceeeeec
Q psy170 60 DTPLLGVPITIKG 72 (84)
Q Consensus 60 ~~pL~GvPi~vKD 72 (84)
..++.|+-+.+++
T Consensus 55 i~~i~G~E~~~~~ 67 (67)
T smart00481 55 IKPIIGLEANIVD 67 (67)
T ss_pred CeEEEEEEEEecC
Confidence 4578999888764
No 51
>PF01193 RNA_pol_L: RNA polymerase Rpb3/Rpb11 dimerisation domain; InterPro: IPR011261 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase (RNAP) II, which is responsible for all mRNA synthesis in eukaryotes, consists of 12 subunits. Subunits Rpb3 and Rpb11 form a heterodimer that is functionally analogous to the archaeal RNAP D/L heterodimer, and to the prokaryotic RNAP alpha subunit (RpoA) homodimer. In each case, they play a key role in RNAP assembly by forming a platform on which the catalytic subunits (eukaryotic Rpb1/Rpb2, and prokaryotic beta/beta') can interact []. These different subunits share regions of homology required for dimerisation. In eukaryotic Rpb11 and archaeal L subunits, the dimerisation domain consists of a contiguous Rpb11-like domain, whereas in eukaryotic Rpb3, archaeal D and bacterial RpoA subunits (IPR011263 from INTERPRO), the dimerisation domain consists of the Rpb11-like domain interrupted by an insert domain. In the prokaryotic alpha subunit, this dimerisation domain is the N-terminal domain [].; GO: 0003899 DNA-directed RNA polymerase activity, 0046983 protein dimerization activity, 0006351 transcription, DNA-dependent; PDB: 1HQM_B 1YNJ_A 1YNN_A 1I6V_A 2GHO_A 3HKZ_V 2PMZ_X 2PA8_L 3GTK_C 1TWH_C ....
Probab=20.81 E-value=1.4e+02 Score=15.38 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=13.7
Q ss_pred CCccCHHHHHHHHHHHHHH
Q psy170 2 RIKVTSEQVVRAYILRCRD 20 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~ 20 (84)
.|.++|.+++..+++.+.+
T Consensus 45 ~g~~~p~~~l~~A~~~l~~ 63 (66)
T PF01193_consen 45 DGSLTPKEALLKAIKILKE 63 (66)
T ss_dssp BSSS-HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4778888888888877654
Done!