Query psy170
Match_columns 84
No_of_seqs 153 out of 1138
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 19:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 99.9 5.5E-22 1.9E-26 138.8 8.3 74 2-83 12-85 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 99.8 9.8E-22 3.3E-26 139.0 6.5 74 2-83 17-91 (485)
3 1m22_A Peptide amidase, PAM; e 99.8 3.5E-21 1.2E-25 136.7 8.1 74 2-83 22-98 (503)
4 3h0l_A Glutamyl-tRNA(Gln) amid 99.8 1.6E-20 5.5E-25 132.7 4.1 69 2-83 16-84 (478)
5 3a2q_A 6-aminohexanoate-cyclic 99.8 5.3E-19 1.8E-23 125.2 5.0 66 2-83 19-85 (493)
6 3kfu_E Glutamyl-tRNA(Gln) amid 99.7 1.9E-19 6.6E-24 127.1 2.0 67 2-83 12-78 (471)
7 3ppm_A Fatty-acid amide hydrol 99.7 5.7E-18 2E-22 121.9 3.5 67 2-83 82-148 (573)
8 1o9p_A Malonamidase E2; malona 99.7 7.5E-18 2.6E-22 117.3 1.8 62 2-83 13-74 (414)
9 2gi3_A Glutamyl-tRNA(Gln) amid 99.6 2E-17 6.9E-22 116.7 -1.3 63 1-83 17-79 (476)
10 3a1k_A Amidase; AS family enzy 99.2 6.1E-14 2.1E-18 100.1 -6.8 74 2-83 24-108 (521)
11 2vve_A Spike protein P1; viral 53.4 3.7 0.00013 25.5 0.6 13 62-74 123-135 (254)
12 3cra_A Protein MAZG; tandem-re 48.4 7.9 0.00027 25.5 1.6 24 2-25 78-101 (265)
13 2w0c_L Protein 2; virus, membe 46.7 5.4 0.00019 25.6 0.6 13 62-74 204-216 (335)
14 3shg_B VBHA; ampylation, adeny 43.1 23 0.00078 18.1 2.5 19 2-20 41-59 (61)
15 4dx8_H KREV interaction trappe 40.1 6.6 0.00023 24.6 0.2 14 61-74 113-126 (203)
16 3ray_A PR domain-containing pr 32.4 18 0.00061 23.4 1.3 23 60-82 43-65 (237)
17 2kll_A Interleukin-33; beta-tr 31.6 14 0.00049 22.0 0.7 12 63-74 126-137 (161)
18 2l9z_A PR domain zinc finger p 30.7 11 0.00039 17.5 0.1 15 60-74 24-38 (39)
19 1r4p_B Sltii B subunit, shiga- 25.3 26 0.00089 17.9 0.9 16 63-78 44-59 (70)
20 1c4q_A Protein (shiga-like tox 24.9 27 0.00091 17.8 0.9 16 63-78 45-60 (69)
21 3pzp_A DNA polymerase kappa; D 24.5 70 0.0024 22.7 3.3 13 61-73 110-122 (517)
22 3f40_A Uncharacterized NTF2-li 22.6 87 0.003 16.9 2.9 22 1-22 2-23 (114)
23 2j6y_A Phosphoserine phosphata 22.3 1.1E+02 0.0038 17.4 3.3 24 2-25 39-62 (111)
24 2rf4_B DNA-directed RNA polyme 21.8 1.1E+02 0.0037 16.7 3.4 37 7-48 36-72 (87)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=99.86 E-value=5.5e-22 Score=138.80 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=70.2
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++ +|+|+++++++|+++|+++|++++.+.. .|||+||||+|||||+++|++|
T Consensus 12 ~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G~~t 83 (434)
T 2dc0_A 12 TGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV-------RGPLHGLPLTVKDLFPVKGMPT 83 (434)
T ss_dssp TTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTCEEEEETTSCBTTBCC
T ss_pred cCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC-------CCCcCCeeEEEEeccccCCccc
Confidence 6899999999999999999999 9999999999999999999999888765 6999999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 84 t~ 85 (434)
T 2dc0_A 84 RA 85 (434)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=99.85 E-value=9.8e-22 Score=139.01 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=69.0
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHH-HcCCCCccccCCCCCeeeceeeeecCccccCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSL-LEGGKTKEELARDTPLLGVPITIKGSIALKARG 80 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~-~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~ 80 (84)
+|++|++||+++|++||++.|+.+|||+++.+++|+++|+++|+++ +.+. .|||+||||+|||||+++|++
T Consensus 17 ~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~--------~gpL~GvPi~vKD~~~v~G~~ 88 (485)
T 3ip4_A 17 DKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM--------DGKLFGIPMGIKDNIITNGLE 88 (485)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCC--------CSTTTTCEEEEETTBCBTTBC
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCC--------CCCcCCCEEEEEcCcccCCCc
Confidence 6899999999999999999999999999999999999999999988 5553 389999999999999999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 89 tt~ 91 (485)
T 3ip4_A 89 TTC 91 (485)
T ss_dssp CCT
T ss_pred cCC
Confidence 996
No 3
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=99.84 E-value=3.5e-21 Score=136.67 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=69.3
Q ss_pred CCccCHHHHHHHHHHHHHHhC---CCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccC
Q psy170 2 RIKVTSEQVVRAYILRCRDVN---PYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKA 78 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~---~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G 78 (84)
+|++|++|++++|++||++.+ +.+|+|++++++ |+++|+++|++++.+.. .|||+||||+|||||+++|
T Consensus 22 ~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G 93 (503)
T 1m22_A 22 AGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL-------RGPLHGIPLLLKDNINAAP 93 (503)
T ss_dssp TTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC-------CSTTTTCEEEEETTBCCTT
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCC-------CCCcCCceeEeecccccCC
Confidence 689999999999999999999 899999999988 99999999998887764 6999999999999999999
Q ss_pred cccCC
Q psy170 79 RGSFD 83 (84)
Q Consensus 79 ~~tt~ 83 (84)
++||+
T Consensus 94 ~~Tt~ 98 (503)
T 1m22_A 94 MATSA 98 (503)
T ss_dssp SCCCT
T ss_pred CCcCC
Confidence 99996
No 4
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=99.80 E-value=1.6e-20 Score=132.74 Aligned_cols=69 Identities=23% Similarity=0.481 Sum_probs=64.3
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+++.+++|+++|+++|++ .|||+||||+|||||+++|++|
T Consensus 16 ~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~-------------~gpL~GvPi~vKD~~~~~G~~t 82 (478)
T 3h0l_A 16 RGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER-------------ELPLFGIPIAVKDNILVEGEKT 82 (478)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT-------------TSTTTTCEEEEETTBCCTTSBC
T ss_pred cCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh-------------cCCcCCceEEEEcCccCCCCCc
Confidence 689999999999999999999999999999999999999887742 4899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 83 t~ 84 (478)
T 3h0l_A 83 TC 84 (478)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=99.75 E-value=5.3e-19 Score=125.20 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=61.6
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCc-cccCcc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSI-ALKARG 80 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i-~~~G~~ 80 (84)
+|++|++|+++++++||++.++.+|+|+++.+++|+++|++ | .|||+||||+||||| +++|++
T Consensus 19 ~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d---------------~gpL~GvPi~vKD~~~~v~G~~ 82 (493)
T 3a2q_A 19 SGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A---------------SGPFAGVPYLLKDLTVVSQGDI 82 (493)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C---------------CSTTTTCEEEEESSSSCCTTSB
T ss_pred cCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c---------------CCCcCCcEEEEecCCcCcCCCc
Confidence 58999999999999999999999999999999999999877 6 278999999999999 999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 83 Tt~ 85 (493)
T 3a2q_A 83 NTS 85 (493)
T ss_dssp CCT
T ss_pred ccc
Confidence 996
No 6
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.75 E-value=1.9e-19 Score=127.08 Aligned_cols=67 Identities=30% Similarity=0.475 Sum_probs=61.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+++. ++|+++|+++|+ ..||+||||+|||||+++|++|
T Consensus 12 ~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~--------------~~pL~GvPi~vKD~~~~~G~~t 76 (471)
T 3kfu_E 12 RGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDP--------------GLPLAGLVVAVKDNIATRGLRT 76 (471)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCC--------------SCTTTTCEEEEETTBCCTTSCC
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCc--------------cCCcCCCeEEEECCcccCCccc
Confidence 6899999999999999999999999999999 889999987763 2489999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 77 t~ 78 (471)
T 3kfu_E 77 TA 78 (471)
T ss_dssp CT
T ss_pred cc
Confidence 96
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.70 E-value=5.7e-18 Score=121.94 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|++++|++||+..++.+|||+++..+ +.++|++++. .|||+||||+|||||+++|++|
T Consensus 82 ~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~--------------~gpL~GvPi~vKD~~~~~G~~t 146 (573)
T 3ppm_A 82 SGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPR--------------QGLLYGVPVSLKECFSYKGHDS 146 (573)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCT--------------TCTTTTCEEEEETTBCCBTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhh--------------cCCcCCCeEEEEcccCCCCCCc
Confidence 589999999999999999999999999999865 4555544331 4899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 147 t~ 148 (573)
T 3ppm_A 147 TL 148 (573)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.67 E-value=7.5e-18 Score=117.34 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCccc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARGS 81 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~t 81 (84)
+|++|++|+++++++||++.++.+|+|+++.++++ + .. .+||+||||+|||||+++|++|
T Consensus 13 ~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~------------~~-------~gpL~GvPi~vKD~~~v~G~~t 72 (414)
T 1o9p_A 13 TGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A------------QA-------SGPLRGIAVGIKDIIDTANMPT 72 (414)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C------------CS-------SSTTTTCEEEEETTBCCSSSCC
T ss_pred cCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c------------cc-------CCCcCCCEEEEEcccccCCccc
Confidence 68999999999999999999999999999988755 1 11 6899999999999999999999
Q ss_pred CC
Q psy170 82 FD 83 (84)
Q Consensus 82 t~ 83 (84)
|+
T Consensus 73 t~ 74 (414)
T 1o9p_A 73 EM 74 (414)
T ss_dssp CT
T ss_pred Cc
Confidence 96
No 9
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=99.62 E-value=2e-17 Score=116.73 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=55.8
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHHcCCCCccccCCCCCeeeceeeeecCccccCcc
Q psy170 1 MRIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGVPITIKGSIALKARG 80 (84)
Q Consensus 1 ~~g~~s~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~~~~~~~~pL~GvPi~vKD~i~~~G~~ 80 (84)
.+|++|++|+++++++||++.++.+|+|+.+.+++|+ |+ .|||+||||+|||||+++|++
T Consensus 17 ~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~--------------~gpL~GvPi~vKD~~~v~G~~ 76 (476)
T 2gi3_A 17 KLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK--------------KGKFWGIPVAIKDNILTLGMR 76 (476)
T ss_dssp TSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC--------------CSTTTTCEEEEETTBCCSSSC
T ss_pred HcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc--------------cCCcCCceEEEEcCccCCCCc
Confidence 3689999999999999999999999999999876555 21 168999999999999999999
Q ss_pred cCC
Q psy170 81 SFD 83 (84)
Q Consensus 81 tt~ 83 (84)
||+
T Consensus 77 Tt~ 79 (476)
T 2gi3_A 77 TTC 79 (476)
T ss_dssp CCT
T ss_pred cCc
Confidence 996
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=99.21 E-value=6.1e-14 Score=100.07 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=50.6
Q ss_pred CCccCH-HHHHHHHHHHHHHhCCCcceEE-ecCHHHHHHHHHHhcHH---------HHcCCCCccccCCCCCeeeceeee
Q psy170 2 RIKVTS-EQVVRAYILRCRDVNPYLNAIV-EERYAEAIREAHAVDQS---------LLEGGKTKEELARDTPLLGVPITI 70 (84)
Q Consensus 2 ~g~~s~-~~v~~~~l~~i~~~~~~~na~~-~~~~~~a~~~A~~~d~~---------~~~~~~~~~~~~~~~pL~GvPi~v 70 (84)
.++++. .++++.++++++..+...|+++ .+.++.+ .++...++. ...+. ..|||+||||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~-------~~gpL~GvPi~v 95 (521)
T 3a1k_A 24 KTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPT-------SDGVLTGRRVAI 95 (521)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCS-------SCCTTTTCEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCC-------CCCCCCCCEEEE
Confidence 456777 8999999999888876665565 4444333 323222210 00122 258999999999
Q ss_pred ecCccccCcccCC
Q psy170 71 KGSIALKARGSFD 83 (84)
Q Consensus 71 KD~i~~~G~~tt~ 83 (84)
||||+++|++||+
T Consensus 96 KD~i~v~G~~Tt~ 108 (521)
T 3a1k_A 96 KDNVTVAGVPMMN 108 (521)
T ss_dssp ETTBCCTTSCBCT
T ss_pred EcCcccCCcccCC
Confidence 9999999999996
No 11
>2vve_A Spike protein P1; viral stem-receptor binding domain, viral protein; 1.77A {Pseudoalteromonas phage PM2} PDB: 2vvd_A
Probab=53.36 E-value=3.7 Score=25.47 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=11.1
Q ss_pred CeeeceeeeecCc
Q psy170 62 PLLGVPITIKGSI 74 (84)
Q Consensus 62 pL~GvPi~vKD~i 74 (84)
-|.||||++|--+
T Consensus 123 eldgvpfslkarv 135 (254)
T 2vve_A 123 ELDGVPFSLKARV 135 (254)
T ss_dssp GGTTCCEEEEEEE
T ss_pred ccCCCcceeeeee
Confidence 3999999999765
No 12
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=48.40 E-value=7.9 Score=25.48 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=17.9
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYL 25 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~ 25 (84)
.|.++..+|++...+++...+|++
T Consensus 78 ~g~F~~~dV~~~~~~KlirRhPhv 101 (265)
T 3cra_A 78 EGRFDFNDICAAISDKLERRHPHV 101 (265)
T ss_dssp TTSCCHHHHHHHHHHHHHTC----
T ss_pred cCCCCHHHHHHHHHHHHHhhCCCC
Confidence 467899999999999999888865
No 13
>2w0c_L Protein 2; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=46.68 E-value=5.4 Score=25.62 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=11.1
Q ss_pred CeeeceeeeecCc
Q psy170 62 PLLGVPITIKGSI 74 (84)
Q Consensus 62 pL~GvPi~vKD~i 74 (84)
-|.||||++|--+
T Consensus 204 eldgvpfslkarv 216 (335)
T 2w0c_L 204 ELDGVPFSLKARV 216 (335)
T ss_dssp GGTTCCEEEEEEE
T ss_pred ccCCCcceeeeee
Confidence 3999999999765
No 14
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=43.10 E-value=23 Score=18.09 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=15.1
Q ss_pred CCccCHHHHHHHHHHHHHH
Q psy170 2 RIKVTSEQVVRAYILRCRD 20 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~ 20 (84)
.|++|..++++.+..|+..
T Consensus 41 ~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 41 VGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HTSSCHHHHHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHHc
Confidence 3788888888888888754
No 15
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=40.07 E-value=6.6 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=8.9
Q ss_pred CCeeeceeeeecCc
Q psy170 61 TPLLGVPITIKGSI 74 (84)
Q Consensus 61 ~pL~GvPi~vKD~i 74 (84)
..|+=||++||||-
T Consensus 113 A~LfvVP~~vKdnt 126 (203)
T 4dx8_H 113 ASLFIVPSVVKDNT 126 (203)
T ss_dssp EEEEEEECCC----
T ss_pred eeEEEEeeeecCCC
Confidence 46999999999996
No 16
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=32.42 E-value=18 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.4
Q ss_pred CCCeeeceeeeecCccccCcccC
Q psy170 60 DTPLLGVPITIKGSIALKARGSF 82 (84)
Q Consensus 60 ~~pL~GvPi~vKD~i~~~G~~tt 82 (84)
..|.||-|+.|||.....|.|+.
T Consensus 43 ~C~~HGP~~fV~D~pv~~g~p~R 65 (237)
T 3ray_A 43 ECPNHGPPVFVSDTPVPVGIPDR 65 (237)
T ss_dssp SBTTTBSCEEECCCCCCTTSTTH
T ss_pred cchhcCCCEEECCccccCCCCCh
Confidence 46899999999999887887753
No 17
>2kll_A Interleukin-33; beta-trefoil, cytokine, polymorphism, secreted; NMR {Homo sapiens}
Probab=31.61 E-value=14 Score=21.99 Aligned_cols=12 Identities=33% Similarity=0.221 Sum_probs=9.9
Q ss_pred eeeceeeeecCc
Q psy170 63 LLGVPITIKGSI 74 (84)
Q Consensus 63 L~GvPi~vKD~i 74 (84)
.-||-|+||||-
T Consensus 126 ~PGvfiGVKDnh 137 (161)
T 2kll_A 126 DPGVFIGVKDNH 137 (161)
T ss_dssp STTEEEEESSSS
T ss_pred CCceEEEeccCe
Confidence 458999999983
No 18
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=30.74 E-value=11 Score=17.52 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=12.7
Q ss_pred CCCeeeceeeeecCc
Q psy170 60 DTPLLGVPITIKGSI 74 (84)
Q Consensus 60 ~~pL~GvPi~vKD~i 74 (84)
..|.+|-|..|||..
T Consensus 24 ~Cp~HGP~~fV~D~p 38 (39)
T 2l9z_A 24 DCPEHGPVTFVPDTP 38 (39)
T ss_dssp SBTTTBSCSCCCCCC
T ss_pred hchhcCCCcccCCCC
Confidence 468999999999973
No 19
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=25.30 E-value=26 Score=17.93 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.5
Q ss_pred eeeceeeeecCccccC
Q psy170 63 LLGVPITIKGSIALKA 78 (84)
Q Consensus 63 L~GvPi~vKD~i~~~G 78 (84)
|.|+.+.||-|-+-.|
T Consensus 44 ltgmtvtiks~tc~sg 59 (70)
T 1r4p_B 44 LTGMTVTIKSSTCESG 59 (70)
T ss_dssp HHTCEEEEECSCCCTT
T ss_pred ecceEEEEEeccccCC
Confidence 7899999999877655
No 20
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=24.93 E-value=27 Score=17.85 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.5
Q ss_pred eeeceeeeecCccccC
Q psy170 63 LLGVPITIKGSIALKA 78 (84)
Q Consensus 63 L~GvPi~vKD~i~~~G 78 (84)
|.|+.+.||-|-+-.|
T Consensus 45 ltgmtvtiks~tc~sg 60 (69)
T 1c4q_A 45 ITGMTVTIKTNACHNG 60 (69)
T ss_dssp HHTCEEEEECSCCSTT
T ss_pred ecceEEEEEeccccCC
Confidence 7899999999977655
No 21
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=24.53 E-value=70 Score=22.73 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.2
Q ss_pred CCeeeceeeeecC
Q psy170 61 TPLLGVPITIKGS 73 (84)
Q Consensus 61 ~pL~GvPi~vKD~ 73 (84)
+.|.|.|++|-.+
T Consensus 110 P~Lr~kPvaV~~~ 122 (517)
T 3pzp_A 110 PELKDKPIAVGSM 122 (517)
T ss_dssp GGGTTSCEEEEET
T ss_pred ccccCCcEEEecC
Confidence 4589999999753
No 22
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=22.61 E-value=87 Score=16.95 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.9
Q ss_pred CCCccCHHHHHHHHHHHHHHhC
Q psy170 1 MRIKVTSEQVVRAYILRCRDVN 22 (84)
Q Consensus 1 ~~g~~s~~~v~~~~l~~i~~~~ 22 (84)
|+-..++.++++.|++.....+
T Consensus 2 ~~~~~~~~~~v~~f~~A~~~gD 23 (114)
T 3f40_A 2 MKTQITTRDLVLEFIHALNTEN 23 (114)
T ss_dssp CCSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCcHHHHHHHHHHHHHcCC
Confidence 5667789999999999877655
No 23
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=22.27 E-value=1.1e+02 Score=17.36 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCccCHHHHHHHHHHHHHHhCCCc
Q psy170 2 RIKVTSEQVVRAYILRCRDVNPYL 25 (84)
Q Consensus 2 ~g~~s~~~v~~~~l~~i~~~~~~~ 25 (84)
...++|++++.-..+.+.+.++.+
T Consensus 39 ek~I~PEeiV~iHk~~i~~l~~~l 62 (111)
T 2j6y_A 39 EHQIPPEEIISIHRKVLKELYPSL 62 (111)
T ss_dssp HTTCCHHHHHHHHHHHHHHHCTTS
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCC
Confidence 357899999999999999988775
No 24
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=21.83 E-value=1.1e+02 Score=16.67 Aligned_cols=37 Identities=8% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCCcceEEecCHHHHHHHHHHhcHHHH
Q psy170 7 SEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLL 48 (84)
Q Consensus 7 ~~~v~~~~l~~i~~~~~~~na~~~~~~~~a~~~A~~~d~~~~ 48 (84)
+++++..||+.-+.... .......++.|.+..++.++
T Consensus 36 ae~~L~~FI~~~E~~~~-----~~t~lSs~LsQLKRvQRdlr 72 (87)
T 2rf4_B 36 VLQFLESFIDEKENIID-----IDTNLSSSISQLKRIQRDFK 72 (87)
T ss_dssp HHHHHHHHHHHHHSSSC-----CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHhhc
Confidence 45666677766654321 34455568888887776544
Done!