RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy170
(84 letters)
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 57.5 bits (139), Expect = 1e-11
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+++ E V Y+ + +VN N + + + + R L
Sbjct: 84 ELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS---------------QAPRQGLL 128
Query: 64 LGVPITIKGSIALK 77
GVP+++K + K
Sbjct: 129 YGVPVSLKECFSYK 142
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+++ +++ A I + VNP +NA++ + +A RE+ P
Sbjct: 21 EISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASG----------------PF 64
Query: 64 LGVPITIK 71
GVP +K
Sbjct: 65 AGVPYLLK 72
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 49.5 bits (119), Expect = 8e-09
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 4 KVTSEQVVRAYILRCRDVN---PYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARD 60
++ S + +AY+ R ++ P L A++E +A++EA D+ +G
Sbjct: 24 ELDSTTLTQAYLQRIAALDRTGPRLRAVIELN-PDALKEAAERDRERRDGRLR------- 75
Query: 61 TPLLGVPITIK------------GSIALK 77
PL G+P+ +K GS+AL+
Sbjct: 76 GPLHGIPLLLKDNINAAPMATSAGSLALQ 104
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 48.7 bits (117), Expect = 1e-08
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
K+ VV+ + +P + + + AI++A +D+ + L
Sbjct: 19 KIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDG-------KL 71
Query: 64 LGVPITIK 71
G+P+ IK
Sbjct: 72 FGIPMGIK 79
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 44.8 bits (107), Expect = 3e-07
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+V+ ++VV ++ R + A + Y +A+++A ++ R+ PL
Sbjct: 18 EVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLK-------------ERELPL 64
Query: 64 LGVPITIK 71
G+PI +K
Sbjct: 65 FGIPIAVK 72
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project
on protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 43.7 bits (104), Expect = 8e-07
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+ T ++ + R + NA+ A +EA A+ + L G PL
Sbjct: 14 RTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRG-------PL 65
Query: 64 LGVPITIK 71
G+P+T+K
Sbjct: 66 HGLPLTVK 73
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 40.6 bits (96), Expect = 1e-05
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+V+ +V +AY+ R ++++P L A + + EA AVD L PL
Sbjct: 14 EVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL--------------PL 58
Query: 64 LGVPITIK 71
G+ + +K
Sbjct: 59 AGLVVAVK 66
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 20/68 (29%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+ E++ + + + ++P++ A + R ++ +
Sbjct: 20 EEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG--------------------KF 59
Query: 64 LGVPITIK 71
G+P+ IK
Sbjct: 60 WGIPVAIK 67
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 30.2 bits (69), Expect = 0.048
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 20/68 (29%)
Query: 4 KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
+++ + ++A V + + + PL
Sbjct: 15 ELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASG--------------------PL 54
Query: 64 LGVPITIK 71
G+ + IK
Sbjct: 55 RGIAVGIK 62
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 29.5 bits (67), Expect = 0.079
Identities = 7/75 (9%), Positives = 17/75 (22%), Gaps = 5/75 (6%)
Query: 5 VTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDT--P 62
+ A+ A ++ L + +
Sbjct: 31 PALIDGALGSYDVVDQLYADEATPPTTSREHAVPSA---SENPLSAWYVTTSIPPTSDGV 87
Query: 63 LLGVPITIKGSIALK 77
L G + IK ++ +
Sbjct: 88 LTGRRVAIKDNVTVA 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.10
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 21/91 (23%)
Query: 5 VTSEQVVRAYILRC------RDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELA 58
V + + A+ L C R + + + H L + K L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHH---SMTLTPDEVKSLLL 308
Query: 59 R-------DTP---LLGVPITIKGSIALKAR 79
+ D P L P + IA R
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRL-SIIAESIR 338
Score = 27.5 bits (60), Expect = 0.46
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 3 IKVTSEQVVRAYILRCRDVNPYLNAIV-EERYAEAIREAHAVDQS------LLEGGKT-- 53
+ V + V C+DV +I+ +E I AV + LL +
Sbjct: 22 LSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 54 ----KEELARDTPLLGVPI 68
+E L + L PI
Sbjct: 80 QKFVEEVLRINYKFLMSPI 98
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A
{Bacillus anthracis}
Length = 217
Score = 26.4 bits (59), Expect = 1.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAIREA 40
AY L+ ++ P ++ V E+Y +AI+
Sbjct: 179 AYYLKYQNRRPEFVTNWWHTVNWDRVNEKYLQAIQSQ 215
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer,
oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP:
a.2.11.1 d.44.1.1
Length = 221
Score = 25.6 bits (57), Expect = 1.9
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 9/40 (22%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAIREAHAV 43
AY L+ + Y I E RY + H
Sbjct: 179 AYYLQYLNDKASYAKGIWNVINWAEAENRYIAGDKGGHPF 218
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate
synthase, transferase; 1.90A {Mentha x piperita} PDB:
3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 25.3 bits (56), Expect = 2.2
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 7/44 (15%)
Query: 12 RAYILRCR-DVNPYLNAIVEERYAEAIREA--HAVDQSLLEGGK 52
+ Y D+ YL + R E + H
Sbjct: 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHH----LTFAAPA 41
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide
acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1
d.44.1.1 PDB: 3mds_A
Length = 203
Score = 25.2 bits (56), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEA 36
AY L+ ++ YL AI EE + +A
Sbjct: 171 AYYLKYQNRRADYLQAIWNVLNWDVAEEFFKKA 203
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide
inactivation, oxidoreductase; 2.60A
{Methanothermobacterthermautotrophicus} SCOP: a.2.11.1
d.44.1.1
Length = 205
Score = 25.2 bits (56), Expect = 2.5
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAI 37
AY + R+V P Y+ A VE+R+ + +
Sbjct: 172 AYYIDYRNVRPDYVEAFWNIVNWKEVEKRFEDIL 205
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A
{Acidilobus saccharovorans}
Length = 223
Score = 25.3 bits (56), Expect = 2.6
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAI 37
AY + R+ Y+++ VE RY +A+
Sbjct: 183 AYYIDYRNDRAKYVDSWWDLINWDDVEARYQKAL 216
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A
{Escherichia coli} SCOP: b.122.1.10
Length = 125
Score = 24.9 bits (55), Expect = 2.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 2 RIKVTSEQVVRAYILRCRDVNPYLNAIVEE 31
+KV E + RA I D + +A E
Sbjct: 94 TVKVLVEGLQRARISALSDNGEHFSAKAEY 123
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP:
a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Length = 207
Score = 24.8 bits (55), Expect = 3.1
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAIREAHAV 43
A+ L+ ++V + A V+ RYA A + +
Sbjct: 165 AFYLQYKNVKVDFAKAFWNVVNWADVQSRYAAATSQTKGL 204
>2awp_A Iron super-oxide dismutase; structural genomics, structural
genomics consortium, SGC, oxidoreductase; 2.00A
{Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A
Length = 198
Score = 24.8 bits (55), Expect = 3.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAIRE 39
AY + R+ P Y+ A E +A+++
Sbjct: 163 AYYIDYRNDRPSYVKAWWNLVNWNFANENLKKALQK 198
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus
acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A*
1wb7_A
Length = 210
Score = 24.8 bits (55), Expect = 3.9
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAI 37
AY L+ ++ YLNA E+R + +
Sbjct: 175 AYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQKYL 208
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 24.8 bits (54), Expect = 3.9
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 4 KVTSEQVVRAYIL----RCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELAR 59
+ +V +++L + R + + + EA+ + Q + G + E LA
Sbjct: 52 QGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLAS 111
Query: 60 D 60
Sbjct: 112 Q 112
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A
{Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A
Length = 214
Score = 24.5 bits (54), Expect = 4.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 13 AYILRCRDVNP-YLNAI--------VEERYAEAIREAHAV 43
AY L+ ++ Y+ VE+R +A+ A +
Sbjct: 170 AYYLQYKNDRGSYVENWWNVVNWDDVEKRLEQALNNAKPL 209
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain,
tudor P100, SND1, methylated arginine, SDMA, splicing;
2.10A {Drosophila melanogaster}
Length = 218
Score = 23.9 bits (51), Expect = 8.6
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 1 MRIKVTSEQVVRAYILRCRDVNPYLNA-IVEERYAEAIREAHAVDQSLLEGGKTKEELAR 59
+ +++ LR +V E A + + L++ K +E AR
Sbjct: 148 LNVELKVTGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAAQEAAR 207
Query: 60 D 60
Sbjct: 208 V 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.371
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,324,134
Number of extensions: 70627
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 38
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)