RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy170
         (84 letters)



>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Staphylococcus aureus [TaxId: 1280]}
          Length = 485

 Score = 66.4 bits (161), Expect = 3e-15
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 4  KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
          K+    VV+       + +P + + +      AI++A  +D+   +          D  L
Sbjct: 19 KIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKD-------QMDGKL 71

Query: 64 LGVPITIKGSIALK 77
           G+P+ IK +I   
Sbjct: 72 FGIPMGIKDNIITN 85


>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
          maltophilia [TaxId: 40324]}
          Length = 490

 Score = 61.3 bits (147), Expect = 2e-13
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 4  KVTSEQVVRAYILRCRDV---NPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARD 60
          ++ S  + +AY+ R   +    P L A++E    +A++EA   D+   +G          
Sbjct: 20 ELDSTTLTQAYLQRIAALDRTGPRLRAVIELN-PDALKEAAERDRERRDGRLRG------ 72

Query: 61 TPLLGVPITIKGSIALK 77
           PL G+P+ +K +I   
Sbjct: 73 -PLHGIPLLLKDNINAA 88


>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
           hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 537

 Score = 55.1 bits (131), Expect = 4e-11
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 4   KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
           +++ E V   Y+ +  +VN   N +         + + A  Q                 L
Sbjct: 54  ELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQG---------------LL 98

Query: 64  LGVPITIKGSIALK 77
            GVP+++K   + K
Sbjct: 99  YGVPVSLKECFSYK 112


>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 51.8 bits (123), Expect = 5e-10
 Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 20/76 (26%)

Query: 2  RIKVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDT 61
            +   E++ +  +   + ++P++ A +  R   ++ +                      
Sbjct: 17 LSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK--------------------G 56

Query: 62 PLLGVPITIKGSIALK 77
             G+P+ IK +I   
Sbjct: 57 KFWGIPVAIKDNILTL 72


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
          [TaxId: 375]}
          Length = 412

 Score = 49.0 bits (115), Expect = 4e-09
 Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 20/74 (27%)

Query: 4  KVTSEQVVRAYILRCRDVNPYLNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPL 63
          +++    +             ++A V      A  +A                     PL
Sbjct: 15 ELSPNAAIAQSHAAIEAREKEVHAFVRHD-KSARAQASG-------------------PL 54

Query: 64 LGVPITIKGSIALK 77
           G+ + IK  I   
Sbjct: 55 RGIAVGIKDIIDTA 68


>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
           synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 24.4 bits (53), Expect = 2.0
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 28  IVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGV 66
           I +    EA+  A   +  L E  K +  +    PL  +
Sbjct: 139 ISDSNLYEAMGRAKVFEPELQE--KLRPFMEPIVPLPSI 175


>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
           gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
          Length = 262

 Score = 23.4 bits (49), Expect = 4.8
 Identities = 5/29 (17%), Positives = 11/29 (37%)

Query: 12  RAYILRCRDVNPYLNAIVEERYAEAIREA 40
           +  +L     NP+++    + Y E     
Sbjct: 223 KYVLLSKGQNNPFVDPTGCKNYIEQKAND 251


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
           synthase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 410

 Score = 22.9 bits (49), Expect = 6.4
 Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 28  IVEERYAEAIREAHAVDQSLLEGGKTKEELARDTPLLGV 66
           I      EA++ +  ++  L +  + K +++   PL  +
Sbjct: 141 INNADLYEAMQRSQVLEYDLQQ--RLKAKMSLVKPLPSI 177


>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
           {Escherichia coli [TaxId: 562]}
          Length = 439

 Score = 22.8 bits (49), Expect = 6.7
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 11/52 (21%)

Query: 25  LNAIVEERYAEAIREAHAVDQSLLEGGKTKEELARD--TPLLGVPITIKGSI 74
           LN  V+  Y + +  A   D  LL  G+     A D  + LL +     GS+
Sbjct: 392 LNDWVDRYYRDRLTAADLADPQLLREGRE----ALDVLSQLLNL-----GSV 434


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.371 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 306,824
Number of extensions: 12056
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 11
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)