BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17001
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NW40|RGMB_HUMAN RGM domain family member B OS=Homo sapiens GN=RGMB PE=2 SV=3
Length = 437
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 158/285 (55%), Gaps = 33/285 (11%)
Query: 7 TSTPEPPPTLPPASCSFH---GTRRFKH----------CGLFGDPHLKTFNNDYQTCRVR 53
TS+ P T P C++H G R + CGLFGDPHL+TF +++QTC+V
Sbjct: 127 TSSTNPEVTHDP--CNYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVE 184
Query: 54 GAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPL 113
GAWPLIDN YL VQVTN + GS AT T K+T+I K CT++K Y+A D LP
Sbjct: 185 GAWPLIDNNYLSVQVTNVPVVPGSSATA-TNKITIIFKAHH-ECTDQKVYQAVTDD-LPA 241
Query: 114 SFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPE 173
+F++ + ++D L++ SGH+ E+ +YI TT+ VR+VG+YL ++ ++PE
Sbjct: 242 AFVDG--TTSGGDSDAKSLRIVERESGHY--VEMHARYIGTTVFVRQVGRYLTLAIRMPE 297
Query: 174 ELVEPSIQDPNTLQLCTLGCPPSERLD-----IVTSRGHMTDRDHALAKCKD-TEELSND 227
+L S ++ LQLC GCP SER+D + GH R + T E +N
Sbjct: 298 DLAM-SYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLETANT 356
Query: 228 IINN---LTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDP 269
+ + D Y CVFD +T G + +FTAAAHSA DV P
Sbjct: 357 QCHEKMPVKDIYFQSCVFDLLTTGDA-NFTAAAHSALEDVEALHP 400
>sp|Q96B86|RGMA_HUMAN Repulsive guidance molecule A OS=Homo sapiens GN=RGMA PE=1 SV=3
Length = 450
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 148/267 (55%), Gaps = 39/267 (14%)
Query: 22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
SFH T + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN + GS
Sbjct: 150 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 209
Query: 79 ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
AT T+ K+T+I K C ++K Y+A+ D LP +F++ N K+ N LK+
Sbjct: 210 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGAN-SLKITEKV 265
Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
SG H EI KYI TTIVVR+VG+YL + ++PEE+V D L LC GCP ++
Sbjct: 266 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQ 323
Query: 198 RLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYYL 237
++D + G R + A+AKCK E+L + D Y
Sbjct: 324 QIDFQAFHTNAEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLYY 375
Query: 238 DWCVFDTMTAGISYDFTAAAHSAQADV 264
CVFD +T G +FT AA+ A DV
Sbjct: 376 QACVFDLLTTG-DVNFTLAAYYALEDV 401
>sp|Q9N0A6|RGMA_MACFA Repulsive guidance molecule A OS=Macaca fascicularis GN=RGMA PE=2
SV=1
Length = 458
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 155/285 (54%), Gaps = 43/285 (15%)
Query: 22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
SFH T + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN + GS
Sbjct: 158 SFHKHSATPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 217
Query: 79 ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
AT T+ K+T+I K C ++K Y+A+ D LP +F++ N K+ N LK+
Sbjct: 218 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPAAFVDGSKNGGDKHGAN-SLKITEKV 273
Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
SG H EI KYI TTIVVR+VG+YL + ++PEE+V D L LC GCP ++
Sbjct: 274 SGQH--VEIRAKYIGTTIVVRQVGRYLTFAVRVPEEVVNAVEDWDSQGLYLCLRGCPLNQ 331
Query: 198 RLDI----VTSRGHMTDR----------------DHALAKCKDTEELSNDIINNLTDYYL 237
++D + G R + A+AKCK E+L + D Y
Sbjct: 332 QIDFQAFHTNTEGTGARRLAAASPAPTAPETFPYETAVAKCK--EKLP------VEDLYY 383
Query: 238 DWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTE 282
CVFD +T G +FT AA+ A DV +N+ L+L E
Sbjct: 384 QACVFDLLTTG-DVNFTLAAYYALEDVKMLH----SNKDKLHLYE 423
>sp|Q6PCX7|RGMA_MOUSE Repulsive guidance molecule A OS=Mus musculus GN=Rgma PE=1 SV=1
Length = 454
Score = 167 bits (423), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 145/264 (54%), Gaps = 37/264 (14%)
Query: 22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
SFH + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN + GS
Sbjct: 151 SFHKHSAAPNYTHCGLFGDPHLRTFTDHFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSA 210
Query: 79 ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
AT T+ K+T+I K C ++K Y+A+ D LP +F + N K+ N LK+
Sbjct: 211 ATATS-KLTIIFKNFQE-CVDQKVYQAEMDE-LPSAFADGSKNGGDKHGAN-SLKITEKV 266
Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
SG H EI KYI TTIVVR+VG+YL + ++PEE+V +D L LC GCP ++
Sbjct: 267 SGQH--VEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQ 324
Query: 198 RLDIVTSRGHMTD------------------RDHALAKCKDTEELSNDIINNLTDYYLDW 239
++D R + + A+AKCK E+L + D Y
Sbjct: 325 QIDFQAFRANAESPRRPAAASPSPVVPETFPYETAVAKCK--EKLP------VEDLYYQA 376
Query: 240 CVFDTMTAGISYDFTAAAHSAQAD 263
CVFD +T G +FT AA+ A D
Sbjct: 377 CVFDLLTTG-DVNFTLAAYYALED 399
>sp|Q8JG54|RGMA_CHICK Repulsive guidance molecule A OS=Gallus gallus GN=RGMA PE=1 SV=1
Length = 432
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 152/284 (53%), Gaps = 42/284 (14%)
Query: 22 SFH---GTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSP 78
SFH + HCGLFGDPHL+TF + +QTC+V+GAWPLIDN YL VQVTN + GS
Sbjct: 131 SFHKHSAAPNYTHCGLFGDPHLRTFTDTFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSS 190
Query: 79 ATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138
AT T+ K+T+I K C +K Y+A+ D LP +F + N K+ N LK+
Sbjct: 191 ATATS-KLTIIFKSFQE-CVEQKVYQAEMDE-LPAAFADGSKNGGDKHGAN-SLKITEKV 246
Query: 139 SGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEP-SIQDPNTLQLCTLGCPPSE 197
SG H EI KYI TTIVVR+VG+YL + ++PEE+V +D L LC GCP ++
Sbjct: 247 SGQH--IEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQ 304
Query: 198 RLDIVTSR------GHMTDR-------------DHALAKCKDTEELSNDIINNLTDYYLD 238
++D T R G + + A AKC+ E+L + D Y
Sbjct: 305 QIDFQTFRLAQAAEGRARRKGPSLPAPPEAFTYESATAKCR--EKLP------VEDLYFQ 356
Query: 239 WCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTE 282
CVFD +T G +F AA+ A DV +N+ L+L E
Sbjct: 357 SCVFDLLTTG-DVNFMLAAYYAFEDVKMLH----SNKDKLHLYE 395
>sp|Q7TQ33|RGMB_MOUSE RGM domain family member B OS=Mus musculus GN=Rgmb PE=1 SV=1
Length = 436
Score = 160 bits (405), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 151/285 (52%), Gaps = 33/285 (11%)
Query: 7 TSTPEPPPTLPPASCSFHGTRR-----------FKHCGLFGDPHLKTFNNDYQTCRVRGA 55
TS+ P T P + HG R + CGLFGDPHL+TF + +QTC+V GA
Sbjct: 130 TSSTNPEVTHDPCNYHSHGGVREHGGGDQRPPNYLFCGLFGDPHLRTFKDHFQTCKVEGA 189
Query: 56 WPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSF 115
WPLIDN YL VQVTN + GS AT T KVT+I K + CT++K Y+A D LP +F
Sbjct: 190 WPLIDNNYLSVQVTNVPVVPGSSATA-TNKVTIIFKAQH-ECTDQKVYQAVTDD-LPAAF 246
Query: 116 INSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEEL 175
++ + + D L + SG + E+ +YI TT+ VR++G+YL ++ ++PE+L
Sbjct: 247 VDG--TTSGGDGDVKSLHIVEKESGRY--VEMHARYIGTTVFVRQLGRYLTLAIRMPEDL 302
Query: 176 VEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTD-RDHALAKCKDTEELSNDIINN--- 231
S ++ LQLC GCP SE +D +G ++ H+L + +
Sbjct: 303 AM-SYEESQDLQLCVNGCPMSECID--DGQGQVSAILGHSLPHTTSVQAWPGYTLETAST 359
Query: 232 -------LTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDP 269
+ D Y CVFD +T G + +FTAAAHSA DV P
Sbjct: 360 QCHEKMPVKDIYFQSCVFDLLTTGDA-NFTAAAHSALEDVEALHP 403
>sp|Q8N7M5|RGMC_RAT Hemojuvelin OS=Rattus norvegicus GN=Hfe2 PE=2 SV=1
Length = 422
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 137/263 (52%), Gaps = 23/263 (8%)
Query: 13 PPTLPPASCSF-------HG-TRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYL 64
P L P C + HG T F HC FGDPH+++F+N + TCRV+GAWPL+DN +L
Sbjct: 136 PAPLTPDPCDYEARFSRLHGRTPGFLHCASFGDPHVRSFHNHFHTCRVQGAWPLLDNDFL 195
Query: 65 GVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHS 124
VQ T+ + G+ AT T +K+T+I K C ++K Y+A+ D+ LP +F + VN
Sbjct: 196 FVQATSSPVASGANAT-TIRKITIIFKNMQE-CIDQKVYQAEVDN-LPAAFEDGSVNGGD 252
Query: 125 KNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPN 184
+ + L +++ G H EI YI TTI+VR+ L+ S ++ E++ +
Sbjct: 253 RPGGS-SLSIQTANLGSH--VEIRAAYIGTTIIVRQTAGQLSFSIRVAEDVAR-AFSAEQ 308
Query: 185 TLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDT 244
LQLC GCPPS+RL ++R+ A DT + D Y CVFD
Sbjct: 309 DLQLCVGGCPPSQRLS-------RSERNRRGAIAIDTARRLCKEGLPVEDAYFQSCVFDV 361
Query: 245 MTAGISYDFTAAAHSAQADVLRF 267
+G +FT AA SA D F
Sbjct: 362 SVSG-DPNFTVAAQSALDDARVF 383
>sp|Q6ZVN8|RGMC_HUMAN Hemojuvelin OS=Homo sapiens GN=HFE2 PE=1 SV=1
Length = 426
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 133/243 (54%), Gaps = 19/243 (7%)
Query: 29 FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTV 88
F HC FGDPH+++F++ + TCRV+GAWPL+DN +L VQ T+ + G+ AT T+K+T+
Sbjct: 164 FLHCASFGDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANAT-ATRKLTI 222
Query: 89 IIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
I K C ++K Y+A+ D+ LP++F + +N + + + ++P H EI
Sbjct: 223 IFKNMQE-CIDQKVYQAEVDN-LPVAFEDGSINGGDRPGGSSLSIQTANPGNH---VEIQ 277
Query: 149 IKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIV--TSRG 206
YI TTI++R+ L+ S K+ E+ V + LQLC GCPPS+RL RG
Sbjct: 278 AAYIGTTIIIRQTAGQLSFSIKVAED-VAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRG 336
Query: 207 HMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLR 266
+T D A CK+ + D Y CVFD + +G +FT AA +A D
Sbjct: 337 AITI-DTARRLCKEGLPVE--------DAYFHSCVFDVLISG-DPNFTVAAQAALEDARA 386
Query: 267 FDP 269
F P
Sbjct: 387 FLP 389
>sp|Q7TQ32|RGMC_MOUSE Hemojuvelin OS=Mus musculus GN=Hfe2 PE=1 SV=1
Length = 420
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 129/239 (53%), Gaps = 15/239 (6%)
Query: 29 FKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTV 88
F HC FGDPH+++F+N + TCRV+GAWPL+DN +L VQ T+ + G+ AT T +K+T+
Sbjct: 157 FLHCASFGDPHVRSFHNQFHTCRVQGAWPLLDNDFLFVQATSSPVSSGANAT-TIRKITI 215
Query: 89 IIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIF 148
I K C ++K Y+A+ D+ LP +F + +N + + L +++ G H EI
Sbjct: 216 IFKNMQE-CIDQKVYQAEVDN-LPAAFEDGSINGGDRPGGS-SLSIQTANLGSH--VEIR 270
Query: 149 IKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHM 208
YI TTI++R+ L+ S ++ E++ + LQLC GCPPS+RL
Sbjct: 271 AAYIGTTIIIRQTAGQLSFSIRVAEDVAR-AFSAEQDLQLCVGGCPPSQRLS-------R 322
Query: 209 TDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAHSAQADVLRF 267
++R+ A DT + D Y CVFD +G +FT AA +A D F
Sbjct: 323 SERNRRGAIAIDTARRLCKEGLPVEDAYFQSCVFDVSVSG-DPNFTVAAQTALDDARIF 380
>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1
Length = 2327
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 4 PVITSTPEPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPY 63
P ++ T E P L P C H R C FGDPH +TF+ + + L ++
Sbjct: 1966 PQVSCTAEETPALIPGMCCPHCIPRPATCIAFGDPHYRTFDGKMYHFQGSCTYVLSEDCE 2025
Query: 64 LG---VQVTNELIREGSPATVTTKKVTVII 90
G + VTN+ G TK+VTV+I
Sbjct: 2026 GGDFSIHVTND--DRGLRGVSWTKEVTVLI 2053
>sp|P93759|CDPKE_ARATH Calcium-dependent protein kinase 14 OS=Arabidopsis thaliana
GN=CPK14 PE=2 SV=1
Length = 530
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 39/139 (28%)
Query: 111 LPLSFINSGVNSHSKNADNVVLKVESDPSGHH-------------------------ERA 145
LP F N N H D + L V +P+GH E
Sbjct: 22 LPNPFSNEYGNHH----DGLKLIVLKEPTGHEIKQKYKLGRELGRGEFGVTYLCTEIETG 77
Query: 146 EIFI------KYIETTIVVRRVGKYLAVSAKLPEE----LVEPSIQDPNTLQLCTLGCPP 195
EIF K ++T+I + V + + + ++PE ++ + +D + L C
Sbjct: 78 EIFACKSILKKKLKTSIDIEDVKREVEIMRQMPEHPNIVTLKETYEDDKAVHLVMELCEG 137
Query: 196 SERLDIVTSRGHMTDRDHA 214
E D + +RGH T+R A
Sbjct: 138 GELFDRIVARGHYTERAAA 156
>sp|Q3U492|KCP_MOUSE Kielin/chordin-like protein OS=Mus musculus GN=Kcp PE=1 SV=2
Length = 1550
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 14 PTLPPASCSFHGTRRFKHCGLFGDPHLKTFNN 45
P L P SC R C FGDPH +TF+
Sbjct: 1196 PALSPGSCCLRCLPRPASCMAFGDPHYRTFDG 1227
>sp|Q6ZWJ8|KCP_HUMAN Kielin/chordin-like protein OS=Homo sapiens GN=KCP PE=2 SV=2
Length = 1503
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 6 ITSTPEPPPTLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLG 65
++ P+ P L P SC R C FGDPH +TF+ + ++ L + + G
Sbjct: 1124 LSCGPDKAPALSPGSCCPRCLPRPASCMAFGDPHYRTFDGRLLHFQGSCSYVLAKDCHSG 1183
Query: 66 ---VQVTNELIREGSPATVTTKKVTVII 90
V VTN+ G T++V V++
Sbjct: 1184 DFSVHVTND--DRGRSGVAWTQEVAVLL 1209
>sp|P61243|YCF2_PHYPA Protein ycf2 OS=Physcomitrella patens subsp. patens GN=ycf2 PE=3 SV=1
Length = 2259
Score = 31.2 bits (69), Expect = 8.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 121 NSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAV-SAKLPEELVEPS 179
N H N + VESDP+ IF+KY +T + + + S LP++ V+P+
Sbjct: 1627 NIHELNVNRSTQNVESDPTF---LLGIFLKYFQTGFSKKNTNNIIIIGSTHLPKK-VDPA 1682
Query: 180 IQDPNTL 186
+ PN L
Sbjct: 1683 LISPNRL 1689
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,983,005
Number of Sequences: 539616
Number of extensions: 4963876
Number of successful extensions: 13262
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 13210
Number of HSP's gapped (non-prelim): 40
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)