Query psy17001
Match_columns 295
No_of_seqs 106 out of 125
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 19:14:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06534 RGM_C: Repulsive guid 100.0 4.6E-55 9.9E-60 385.4 11.1 164 97-275 1-178 (179)
2 PF06535 RGM_N: Repulsive guid 100.0 1.8E-33 3.9E-38 244.3 7.9 77 15-92 85-161 (161)
3 smart00832 C8 C8 domain. This 99.4 1.6E-13 3.5E-18 106.0 3.7 68 213-280 3-75 (76)
4 smart00216 VWD von Willebrand 99.3 2.8E-11 6.1E-16 102.7 12.5 134 29-173 9-161 (162)
5 PF08742 C8: C8 domain; Inter 99.2 1.3E-11 2.8E-16 93.6 4.5 69 212-280 2-73 (74)
6 PF00094 VWD: von Willebrand f 98.9 3.3E-09 7.1E-14 88.1 7.2 77 32-109 1-84 (159)
7 PF07481 DUF1521: Domain of Un 77.1 17 0.00036 32.7 8.3 102 32-163 40-143 (171)
8 PF03755 YicC_N: YicC-like fam 29.9 57 0.0012 28.2 3.2 22 156-177 21-43 (159)
9 PF06602 Myotub-related: Myotu 24.5 21 0.00045 35.1 -0.5 11 36-46 256-266 (353)
10 COG3970 Fumarylacetoacetate (F 21.8 76 0.0017 31.5 2.7 106 27-156 238-350 (379)
No 1
>PF06534 RGM_C: Repulsive guidance molecule (RGM) C-terminus; InterPro: IPR009496 This entry contains of several mammalian and one bird sequence from Gallus gallus (Chicken) and represents the C-terminal region of several sequences, but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function, but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=100.00 E-value=4.6e-55 Score=385.40 Aligned_cols=164 Identities=38% Similarity=0.676 Sum_probs=155.9
Q ss_pred ceeeeeeeeccCCCCceeEecCceecccCCCCeeeEEEEecCCCCeeeEEEEEeeeccEEEEeecCCcceeeeecchhhc
Q psy17001 97 CTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELV 176 (295)
Q Consensus 97 c~~~k~y~a~~d~~LP~~F~dgs~~~~~~~G~~~~L~v~~~~~~~~~~VeI~~~yigt~~~Vr~~G~~Ls~svrlPe~~~ 176 (295)
|++||+|||++|+ ||.+|+|||+++|+ +|.+ +|+|.|+.+|+ ||||+++||||+|+|||+|+||||+|||||+++
T Consensus 1 Ct~qKvYqA~~d~-LP~aF~DGT~~gG~-~g~~-sl~I~e~~~g~--hVEI~a~yIgTtIiVRq~G~yLtfavRmPe~v~ 75 (179)
T PF06534_consen 1 CTDQKVYQAETDD-LPAAFVDGTTSGGD-HGAN-SLRILEQSPGR--HVEIQARYIGTTIIVRQVGRYLTFAVRMPEEVA 75 (179)
T ss_pred CcccceeEccccc-CchhhccCCccCCC-CCCc-cEEEEEeCCCc--EEEEEhhccccEEEEEEeCCccEEEEEchHHHH
Confidence 9999999999999 99999999999999 5777 99999999998 999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccccCCCCCcccccccc--------------CCCccchhhHHHHhhhhccccccccccchhhhhhhhhh
Q psy17001 177 EPSIQDPNTLQLCTLGCPPSERLDIVTS--------------RGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVF 242 (295)
Q Consensus 177 ~~s~~~~~~~~lC~~gCp~~e~i~~~~~--------------~~~~~~~~~A~~~C~~~~~~~f~~ch~v~d~yf~sCVf 242 (295)
+ ++++++++|||++|||++|+|+.... .+..++++.|.++|++++ +|+|.|||||||
T Consensus 76 ~-~~~~~~dlqLC~~GCP~~e~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~C~~~l--------~v~D~YFqSCVF 146 (179)
T PF06534_consen 76 E-AFEEEQDLQLCVHGCPRSERIDFREFLAQPRSQKFTRCYGPRSAFPLESATAKCREKL--------PVEDVYFQSCVF 146 (179)
T ss_pred H-hhccccccchhhcCCCchheeCccccccCcccccCCCCCCCCCcccHHHHHHHhhhhC--------CCcchhhhhcee
Confidence 9 89999999999999999999997432 235689999999999987 899999999999
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHhcCCCCCCCc
Q psy17001 243 DTMTAGISYDFTAAAHSAQADVLRFDPSSLNNR 275 (295)
Q Consensus 243 Dlc~~Gd~~~f~~aA~~A~~D~~~l~p~~~~~r 275 (295)
|||+||| .||+++|++|++|+++|||++++|+
T Consensus 147 DLlTTGD-~nft~aA~~AleD~~~l~p~~~~~h 178 (179)
T PF06534_consen 147 DLLTTGD-ANFTAAAYSALEDVKALHPDPERWH 178 (179)
T ss_pred eeeecCC-ccHHHHHHHHHHHHHHhcCchhccc
Confidence 9999999 9999999999999999999999986
No 2
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=100.00 E-value=1.8e-33 Score=244.28 Aligned_cols=77 Identities=60% Similarity=1.101 Sum_probs=74.1
Q ss_pred CCCCCCcccCCCCcceeeeeecCCccccccCCceeEEEeeeeecccCCCeEEEEEeecccCCCceeeeceEEEEEEcC
Q psy17001 15 TLPPASCSFHGTRRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKG 92 (295)
Q Consensus 15 ~~~~~~c~~~~~~~~~~C~~FGDPH~rTFdG~fqTC~~~Ga~pLi~n~~lsVQvtN~p~~~Gs~ata~t~kvTVivk~ 92 (295)
++++++|.|.+.++|+|||+|||||+|||+|+||||+++||||||||+||+|||||+|+++|+.||+++ |||||||+
T Consensus 85 ~~~~~~C~y~~~~~y~hCglFGDPHLRTF~~~fqTC~v~GAWPLIdN~yL~VQvTn~pv~~gs~aTatt-KvTVI~K~ 161 (161)
T PF06535_consen 85 PPSPETCHYGPPPNYRHCGLFGDPHLRTFNDEFQTCKVEGAWPLIDNDYLSVQVTNSPVVPGSSATATT-KVTVIFKN 161 (161)
T ss_pred CCCCCcccCCCCcccceecccCChhHhhccCCceeeeeecceeeecCCcEEEEeeCccccCCccceeee-eEEEEEcC
Confidence 345899999999999999999999999999999999999999999999999999999999999999999 99999995
No 3
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=99.40 E-value=1.6e-13 Score=106.01 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=62.9
Q ss_pred hHHHHhhhhccc--cccccccchhh--hhhhhhhhhhhcCCChhHHHHHHHHHHHHHhcCCCCCC-Ccccccc
Q psy17001 213 HALAKCKDTEEL--SNDIINNLTDY--YLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLN-NRTTLYL 280 (295)
Q Consensus 213 ~A~~~C~~~~~~--~f~~ch~v~d~--yf~sCVfDlc~~Gd~~~f~~aA~~A~~D~~~l~p~~~~-~rt~~~~ 280 (295)
.|..+|..++++ .|.+||.++|+ ||++||||||.++++..-++.|.+||...++.++.... ||+..||
T Consensus 3 ~a~~~C~~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~~~~~~~lC~al~aYa~aC~~~Gv~v~~WR~~~~C 75 (76)
T smart00832 3 YACSQCGILLSPRGPFAACHSVVDPEPFFENCVYDTCACGGDCECLCDALAAYAAACAEAGVCISPWRTPTFC 75 (76)
T ss_pred chhhhhHhhcCCCCChHHHhCcCChHHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHCcCcCCCCCCCCCC
Confidence 478899999999 79999999977 99999999999966588999999999999999999975 9999998
No 4
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=99.31 E-value=2.8e-11 Score=102.68 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=89.0
Q ss_pred ceeeeeecCCccccccCC---ce-eEEEeeeeecccCCCeEEEEEeecccCCCceeeeceEEEEEEcCCccCceeee-ee
Q psy17001 29 FKHCGLFGDPHLKTFNND---YQ-TCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEK-TY 103 (295)
Q Consensus 29 ~~~C~~FGDPH~rTFdG~---fq-TC~~~Ga~pLi~n~~lsVQvtN~p~~~Gs~ata~t~kvTVivk~~~~~c~~~k-~y 103 (295)
+..|.++||||++||||. |+ .|.|..+-...+.+.|+|++++.+. +..++... +|+|.+.+... ...+ .-
T Consensus 9 ~~~C~v~g~~~~~TFDg~~y~~~g~C~yvL~~~~~~~~~f~V~~~~~~~--~~~~~~~~-~v~v~~~~~~i--~~~~~~~ 83 (162)
T smart00216 9 SPTCSVSGDPHYTTFDGVAYTFPGNCYYVLAQDCSSEPTFSVLLKNVPC--GGGATCLK-SVKVELNGDEI--ELKDDNG 83 (162)
T ss_pred CCEEEEcCCCCeECcCCCEEeecCceEEEEEEECCCCCCEEEEEEecCC--CCCceEEE-EEEEEECCEEE--EEEeCCC
Confidence 349999999999999997 44 7777666665455689999999987 44444555 89999887643 2222 34
Q ss_pred eeccCC---CCceeEecCceecccCCCCee------eEEEEecCCCCeeeEEEEEe--eeccEEEEeecCCcc---eeee
Q psy17001 104 EAQADS---PLPLSFINSGVNSHSKNADNV------VLKVESDPSGHHERAEIFIK--YIETTIVVRRVGKYL---AVSA 169 (295)
Q Consensus 104 ~a~~d~---~LP~~F~dgs~~~~~~~G~~~------~L~v~~~~~~~~~~VeI~~~--yigt~~~Vr~~G~~L---s~sv 169 (295)
++.+|+ +||....+..+..... +..+ +|.|.|++. + .+.|+++ |.|.++ .++|+|. ..+.
T Consensus 84 ~v~vng~~v~~p~~~~~~~v~~~~~-~~~~v~~~~~gl~v~~dg~-~--~~~V~~~~~~~g~~~--GLCGn~ng~~~dDf 157 (162)
T smart00216 84 TVTVNGQQVSLPYKTSDGSIQIRSS-GGYVVVITSLGLQVTFDGL-T--LLSVQLPSRYRGKTC--GLCGNFDGEPEDDF 157 (162)
T ss_pred EEEECCEEeeCCcCcCCceEEEEEC-ceEEEEECCCCEEEEECCC-c--EEEEEECHHHCCCee--EccCCCCCCccccc
Confidence 666777 3664433332211111 1111 789999863 2 4999999 899999 5566665 3455
Q ss_pred ecch
Q psy17001 170 KLPE 173 (295)
Q Consensus 170 rlPe 173 (295)
++|+
T Consensus 158 ~~p~ 161 (162)
T smart00216 158 RTPD 161 (162)
T ss_pred cCCC
Confidence 5554
No 5
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=99.21 E-value=1.3e-11 Score=93.59 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=63.5
Q ss_pred hhHHHHhhhhccccccccccchhh--hhhhhhhhhhhcCCChhHHHHHHHHHHHHHhcCCCCCC-Ccccccc
Q psy17001 212 DHALAKCKDTEELSNDIINNLTDY--YLDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLN-NRTTLYL 280 (295)
Q Consensus 212 ~~A~~~C~~~~~~~f~~ch~v~d~--yf~sCVfDlc~~Gd~~~f~~aA~~A~~D~~~l~p~~~~-~rt~~~~ 280 (295)
+.|...|..++++.|.+||.++|+ ||++|++|+|.++++.+-++.+.++|...++..+.... ||+..+|
T Consensus 2 ~~a~~~C~~l~~~~F~~C~~~v~~~~f~~~C~~d~C~~~~~~~~~C~~l~~Ya~~C~~~g~~~~~WR~~~~C 73 (74)
T PF08742_consen 2 QRAESYCGILLDPEFAPCHSVVDPDPFYEACVYDMCACPGSQQCLCEALSAYARECQRAGICVGDWRTPTLC 73 (74)
T ss_pred chHhHHhHHHcCchhhhhcccCccHHHHHHHHHHHcCCCCCcchhhHHHHHHHHHHHHCcCCCCCCCCcCCC
Confidence 358899999999999999999976 99999999999987678999999999999999999955 9999988
No 6
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=98.91 E-value=3.3e-09 Score=88.14 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=49.2
Q ss_pred eeeecCCccccccCCceeEEEeeeee--cccC---CC-eEEEEEeecccCCCcee-eeceEEEEEEcCCccCceeeeeee
Q psy17001 32 CGLFGDPHLKTFNNDYQTCRVRGAWP--LIDN---PY-LGVQVTNELIREGSPAT-VTTKKVTVIIKGRSTPCTNEKTYE 104 (295)
Q Consensus 32 C~~FGDPH~rTFdG~fqTC~~~Ga~p--Li~n---~~-lsVQvtN~p~~~Gs~at-a~t~kvTVivk~~~~~c~~~k~y~ 104 (295)
|.++||||++||||..+.+.+.+.|- |... .. ++|.+++.+...+.... .++ +|++.+.+...+...-...+
T Consensus 1 C~v~g~~~~~TFDg~~y~~~~~c~y~~vl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~v~i~~~~~~i~i~~~~~~~ 79 (159)
T PF00094_consen 1 CSVYGDPHITTFDGKSYSFPGNCTYILVLAQDCSSDPKFSFSVENKNCPCGQSGTSCTR-KVTIRLGNHEIEIKPNNGDQ 79 (159)
T ss_pred CEEeCCCeEEcCCCCEEecCCCceEEEEeecccCccccccccceeeeeccCCCCcceee-EEEEEcccceeeEeccccce
Confidence 89999999999999977766666677 4433 21 56666655543355444 555 99999987655222221135
Q ss_pred eccCC
Q psy17001 105 AQADS 109 (295)
Q Consensus 105 a~~d~ 109 (295)
+.+|+
T Consensus 80 v~vng 84 (159)
T PF00094_consen 80 VTVNG 84 (159)
T ss_pred EEEee
Confidence 55666
No 7
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=77.15 E-value=17 Score=32.72 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=55.9
Q ss_pred eeeecCCcccccc-CC-ceeEEEeeeeecccCCCeEEEEEeecccCCCceeeeceEEEEEEcCCccCceeeeeeeeccCC
Q psy17001 32 CGLFGDPHLKTFN-ND-YQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADS 109 (295)
Q Consensus 32 C~~FGDPH~rTFd-G~-fqTC~~~Ga~pLi~n~~lsVQvtN~p~~~Gs~ata~t~kvTVivk~~~~~c~~~k~y~a~~d~ 109 (295)
=-+.||||+-.=. |+ -+-|+.-....|-|- -.|.|.+.|- |...+..+ |+||+-..... .+++
T Consensus 40 TriwGDPHvd~~Gdg~~~fDFk~~~tf~L~DG--TKItV~T~p~--gng~T~as-kLtIt~Gd~~~----------~V~g 104 (171)
T PF07481_consen 40 TRIWGDPHVDADGDGKTDFDFKGDMTFQLDDG--TKITVDTVPW--GNGMTYAS-KLTITNGDNAW----------QVEG 104 (171)
T ss_pred eEEeCCCccccCCCcccceeecCceEEEeCCC--CEEEEeeeec--CCCcEEee-eEEEEcCCceE----------EEee
Confidence 3799999994322 22 112222222222222 6788899998 66566777 99998876533 2222
Q ss_pred CCceeEecCceecccCCCCeeeEEEEecCCCCeeeEEEEEeeeccEEEEeecCC
Q psy17001 110 PLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIKYIETTIVVRRVGK 163 (295)
Q Consensus 110 ~LP~~F~dgs~~~~~~~G~~~~L~v~~~~~~~~~~VeI~~~yigt~~~Vr~~G~ 163 (295)
|-.. ..|.. -|+|..-..++ .+--+.+ -|.+++--+.|.
T Consensus 105 -i~~~----------~~gk~-dL~v~q~n~G~--~lD~~t~-DG~~l~~~~~g~ 143 (171)
T PF07481_consen 105 -IDQD----------KDGKG-DLTVQQSNAGR--TLDALTP-DGYQLIENQAGK 143 (171)
T ss_pred -ccCC----------CcCcc-ccEEEeccCcc--eeeeecC-CcceEEeccCCC
Confidence 1000 11221 37777666666 6666666 566665555554
No 8
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=29.89 E-value=57 Score=28.24 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.2
Q ss_pred EEEe-ecCCcceeeeecchhhcc
Q psy17001 156 IVVR-RVGKYLAVSAKLPEELVE 177 (295)
Q Consensus 156 ~~Vr-~~G~~Ls~svrlPe~~~~ 177 (295)
++|| .+++||-+.+|||+.+..
T Consensus 21 vEikSvN~R~Ldi~~rlP~~l~~ 43 (159)
T PF03755_consen 21 VEIKSVNHRFLDISIRLPRELSS 43 (159)
T ss_pred EEEEecccCceeeEEeCCHHHHH
Confidence 3444 899999999999999864
No 9
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=24.53 E-value=21 Score=35.06 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=8.5
Q ss_pred cCCccccccCC
Q psy17001 36 GDPHLKTFNND 46 (295)
Q Consensus 36 GDPH~rTFdG~ 46 (295)
=||||||++|.
T Consensus 256 lDpyyRTi~GF 266 (353)
T PF06602_consen 256 LDPYYRTIEGF 266 (353)
T ss_dssp H-CGGGSHHHH
T ss_pred HHhhhhhHHHH
Confidence 49999999993
No 10
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=21.85 E-value=76 Score=31.53 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=52.7
Q ss_pred CcceeeeeecCCccccccCCceeEEEeeeeecccCCCeEEEEEeeccc--CCCceee-eceEEEEEEcCCccCceeeeee
Q psy17001 27 RRFKHCGLFGDPHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIR--EGSPATV-TTKKVTVIIKGRSTPCTNEKTY 103 (295)
Q Consensus 27 ~~~~~C~~FGDPH~rTFdG~fqTC~~~Ga~pLi~n~~lsVQvtN~p~~--~Gs~ata-~t~kvTVivk~~~~~c~~~k~y 103 (295)
+.+..|-+|| |-+|+||+.|---- ++...++.-|+-+... .|+..++ .+ -... .++.
T Consensus 238 KdnnasCaiG-PfIrlfDe~f~~~d-------v~~a~vtLkv~gedgf~l~G~snm~~is--------R~p~--~l~~-- 297 (379)
T COG3970 238 KDNNASCAIG-PFIRLFDETFTIDD-------VKSAEVTLKVTGEDGFFLEGSSNMAEIS--------RSPE--ELVI-- 297 (379)
T ss_pred cccCcccccc-ceEEeecCCCChhh-------hhhceEEEEEEccCceEEeccccHHhhc--------cCHH--HHHH--
Confidence 4566777888 99999999864211 3444456666655543 3433331 11 1111 1111
Q ss_pred eecc-CCCCc--eeEecCceecccCC-CCeeeEEEEecCCCCeeeEEEEEeeeccEE
Q psy17001 104 EAQA-DSPLP--LSFINSGVNSHSKN-ADNVVLKVESDPSGHHERAEIFIKYIETTI 156 (295)
Q Consensus 104 ~a~~-d~~LP--~~F~dgs~~~~~~~-G~~~~L~v~~~~~~~~~~VeI~~~yigt~~ 156 (295)
|+-. ++|.| .+|--|+...-.++ |.. ++-..-. .|. -|||+.|-+|+.+
T Consensus 298 Q~l~~~hqyPDG~~lflGTmfaP~kDr~~~-g~gfth~-~gD--~VeIStp~lG~Li 350 (379)
T COG3970 298 QALNRDHQYPDGFALFLGTMFAPGKDRGLK-GLGFTHE-VGD--IVEISTPKLGTLI 350 (379)
T ss_pred HHhccCCCCCCceeEEeeeeeccccccCCC-CCCcccC-CCC--EEEEeccccceee
Confidence 2222 34677 22233444322110 111 2222212 245 7999999889988
Done!