Query psy17001
Match_columns 295
No_of_seqs 106 out of 125
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:15:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shs_A HOC head outer capsid p 18.6 1E+02 0.0035 28.9 4.1 74 59-138 155-228 (304)
2 1yby_A Translation elongation 12.0 2.5E+02 0.0087 24.7 4.8 22 145-166 188-213 (215)
3 3oyy_A EF-P, elongation factor 10.7 3.2E+02 0.011 23.5 4.9 22 145-166 162-187 (191)
4 2eab_A Alpha-fucosidase; glyco 10.3 2E+02 0.0069 30.4 4.1 49 110-162 804-853 (899)
5 1zsq_A Myotubularin-related pr 10.2 50 0.0017 33.1 -0.5 12 34-45 364-375 (528)
6 2yf0_A Myotubularin-related pr 10.0 54 0.0019 32.7 -0.4 12 34-45 352-363 (512)
7 1of9_A Pore-forming peptide am 9.8 1.6E+02 0.0054 21.2 2.2 45 213-258 30-74 (77)
8 3bqp_A Proactivator polypeptid 9.7 1.8E+02 0.0061 20.3 2.5 45 212-257 30-74 (80)
9 1lw3_A Myotubularin-related pr 9.0 60 0.002 33.5 -0.5 12 34-45 436-447 (657)
10 2qyp_A Proactivator polypeptid 8.5 1.7E+02 0.006 21.3 2.1 45 212-257 33-77 (91)
No 1
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=18.62 E-value=1e+02 Score=28.92 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=42.5
Q ss_pred ccCCCeEEEEEeecccCCCceeeeceEEEEEEcCCccCceeeeeeeeccCCCCceeEecCceecccCCCCeeeEEEEecC
Q psy17001 59 IDNPYLGVQVTNELIREGSPATVTTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDP 138 (295)
Q Consensus 59 i~n~~lsVQvtN~p~~~Gs~ata~t~kvTVivk~~~~~c~~~k~y~a~~d~~LP~~F~dgs~~~~~~~G~~~~L~v~~~~ 138 (295)
-+.+-..|.|+|..- +..+.+.+ +|+|+=-+...|.++-+ +|-+.+.+.+.|+-..-..|++.|+- .|.|.+++
T Consensus 155 teaG~YtV~VTn~~~--~c~~s~~~-~i~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 228 (304)
T 3shs_A 155 DKNGVYTVKVWGESE--DSAASAST-KIMLATMNVDQDVVESK--TVALGNEISLNYVVSEDIVGDSSGMP-NLTIKYNW 228 (304)
T ss_dssp GGCEEEEEEEESSSG--GGCEEEEE-EEEECEEEEEECCCSEE--EEETTSCEEECCEEEEECCSCCTTCC-EEEEEEEE
T ss_pred cCCeEEEEEEEcCCC--Ccccccce-EEEEEccccchhheEee--hhhcCcEEEEEEEEeeccccCCCCCC-ceEEEEEE
Confidence 344557899998864 56666777 77776554444445555 44454434444443333445555775 66666554
No 2
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=11.97 E-value=2.5e+02 Score=24.69 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=12.8
Q ss_pred EEEEEe-ee--ccEEEEe-ecCCcce
Q psy17001 145 AEIFIK-YI--ETTIVVR-RVGKYLA 166 (295)
Q Consensus 145 VeI~~~-yi--gt~~~Vr-~~G~~Ls 166 (295)
++|++| || |-.|.|. +.|.|++
T Consensus 188 ~~v~VP~FI~~Gd~I~VdT~~g~Y~~ 213 (215)
T 1yby_A 188 ASIKVPLFVNKGDIIRIDTRTGEYME 213 (215)
T ss_dssp CEEEEETTCCTTCEEEEETTTTEEEE
T ss_pred cEEEeCCcEeCCCEEEEECCCCeEec
Confidence 466666 54 5556555 6666653
No 3
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=10.69 E-value=3.2e+02 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=16.6
Q ss_pred EEEEEe-ee--ccEEEEe-ecCCcce
Q psy17001 145 AEIFIK-YI--ETTIVVR-RVGKYLA 166 (295)
Q Consensus 145 VeI~~~-yi--gt~~~Vr-~~G~~Ls 166 (295)
++|++| || |-.|.|. +.|.|++
T Consensus 162 ~~v~VP~fi~~Gd~I~VdT~~g~Y~~ 187 (191)
T 3oyy_A 162 AELQVSAFCEIGDSIEIDTRTGEYKS 187 (191)
T ss_dssp CEEEEETTCCTTCEEEEETTTTEEEE
T ss_pred CEEEeCCeeeCCCEEEEECCCCeEhh
Confidence 688888 66 7777777 7787775
No 4
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Probab=10.33 E-value=2e+02 Score=30.42 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCceeEecCceecccCCCCeeeEEEEecCCCCeeeEEEEEe-eeccEEEEeecC
Q psy17001 110 PLPLSFINSGVNSHSKNADNVVLKVESDPSGHHERAEIFIK-YIETTIVVRRVG 162 (295)
Q Consensus 110 ~LP~~F~dgs~~~~~~~G~~~~L~v~~~~~~~~~~VeI~~~-yigt~~~Vr~~G 162 (295)
-||..+.+|++.++.-.|.- .|.+.|+. ++ -.++.+. -.|..|.|+..+
T Consensus 804 AlP~~W~~Gsv~GLrarGgf-~V~~~w~~-G~--l~~~~i~s~~g~~~~v~~~~ 853 (899)
T 2eab_A 804 ALPDAWAGGSVSGLVARGNF-TVGTTWKN-GK--ATEVRLTSNKGKQAAVKITA 853 (899)
T ss_dssp TCCTTCCSEEEEEEEETTTE-EEEEEEET-TE--EEEEEEEESSCCCEEEEETT
T ss_pred cCCcccccCeEEEEEecCcE-EEEEEEEC-CE--EEEEEEEeCCCCeEEEEeCC
Confidence 38999999999999888875 67889985 54 3345444 268888888555
No 5
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=10.23 E-value=50 Score=33.05 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=9.9
Q ss_pred eecCCccccccC
Q psy17001 34 LFGDPHLKTFNN 45 (295)
Q Consensus 34 ~FGDPH~rTFdG 45 (295)
+.=||||||++|
T Consensus 364 llLDPyyRTi~G 375 (528)
T 1zsq_A 364 LMLDGYYRTIRG 375 (528)
T ss_dssp HHHCGGGGSHHH
T ss_pred HHcCccccHHHH
Confidence 445999999998
No 6
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=9.97 E-value=54 Score=32.70 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.9
Q ss_pred eecCCccccccC
Q psy17001 34 LFGDPHLKTFNN 45 (295)
Q Consensus 34 ~FGDPH~rTFdG 45 (295)
+-=||||||++|
T Consensus 352 llLDPyyRTi~G 363 (512)
T 2yf0_A 352 LLLDSYYRTIKG 363 (512)
T ss_dssp HHHCSGGGSHHH
T ss_pred HHhCccccHHHH
Confidence 456999999998
No 7
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=9.78 E-value=1.6e+02 Score=21.20 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=34.2
Q ss_pred hHHHHhhhhccccccccccchhhhhhhhhhhhhhcCCChhHHHHHH
Q psy17001 213 HALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAAH 258 (295)
Q Consensus 213 ~A~~~C~~~~~~~f~~ch~v~d~yf~sCVfDlc~~Gd~~~f~~aA~ 258 (295)
....-|..+-++.-..|+.+++.|+.. +.|++..+.++..+|...
T Consensus 30 ~l~~~C~~lp~~~~~~C~~~V~~y~~~-iI~~l~~~~~P~~IC~~l 74 (77)
T 1of9_A 30 YISSLCNKASGFIATLCTKVLDFGIDK-LIQLIEDKVDANAICAKI 74 (77)
T ss_dssp HHHHHHTTCSSTTHHHHHHHHHHCHHH-HHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHhhc
Confidence 345679888556678899999999887 677877776688887654
No 8
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=9.67 E-value=1.8e+02 Score=20.25 Aligned_cols=45 Identities=7% Similarity=0.074 Sum_probs=34.0
Q ss_pred hhHHHHhhhhccccccccccchhhhhhhhhhhhhhcCCChhHHHHH
Q psy17001 212 DHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAA 257 (295)
Q Consensus 212 ~~A~~~C~~~~~~~f~~ch~v~d~yf~sCVfDlc~~Gd~~~f~~aA 257 (295)
+.....|..+-++.-..|+.+++.|... +.|++..+.+...+|..
T Consensus 30 ~~l~~~C~~lp~~~~~~C~~~v~~y~~~-ii~~l~~~~~P~~iC~~ 74 (80)
T 3bqp_A 30 AALEKGCSFLPDPYQKQCDQFVAEYEPV-LIEILVEVMDPSFVCLK 74 (80)
T ss_dssp HHHHHHGGGSCGGGHHHHHHHHHHHHHH-HHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhCCCccchhhHHHHHHHHHH-HHHHHHHCCCHHHHHhh
Confidence 4577889988766678899999999887 66777677657666654
No 9
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=8.99 E-value=60 Score=33.47 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=10.4
Q ss_pred eecCCccccccC
Q psy17001 34 LFGDPHLKTFNN 45 (295)
Q Consensus 34 ~FGDPH~rTFdG 45 (295)
+.=||||||++|
T Consensus 436 LlLDPyYRTi~G 447 (657)
T 1lw3_A 436 LMLDGYYRTIRG 447 (657)
T ss_dssp HHHCGGGGSHHH
T ss_pred HHhCccccHHHH
Confidence 456999999999
No 10
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=8.54 E-value=1.7e+02 Score=21.29 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=34.0
Q ss_pred hhHHHHhhhhccccccccccchhhhhhhhhhhhhhcCCChhHHHHH
Q psy17001 212 DHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTAGISYDFTAAA 257 (295)
Q Consensus 212 ~~A~~~C~~~~~~~f~~ch~v~d~yf~sCVfDlc~~Gd~~~f~~aA 257 (295)
+.....|..+-++.-..|..+++.|... ++|++..+.+...+|..
T Consensus 33 ~~l~~~C~~lp~~~~~~C~~~V~~y~~~-ii~~l~~~~~P~~iC~~ 77 (91)
T 2qyp_A 33 DAFDKMCSKLPKSLSEECQEVVDTYGSS-ILSILLEEVSPELVCSM 77 (91)
T ss_dssp HHHHHHHHTSCSSTTTTHHHHHHHHHHH-HHHHHHHTCCHHHHHHT
T ss_pred HHHHHHHHHCCCCcccchHHHHHHHHHH-HHHHHHHcCCHHHHHhh
Confidence 3466789988776788899999999887 67887777656555543
Done!