RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17001
(295 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 3e-08
Identities = 44/271 (16%), Positives = 76/271 (28%), Gaps = 105/271 (38%)
Query: 50 CRVRGAWPLIDNPYLGVQVTNELIREGSPAT------VTTKKVTVIIKGRSTPCTNEKTY 103
R A+P P ++ + E EG P+ +T ++V + TN
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNK-----TNS--- 358
Query: 104 EAQADSPLPLSFINSGVNSHSKNADNVVL---------------KVESDPSG-------H 141
A + +S +N A N+V+ K ++ PSG
Sbjct: 359 HLPAGKQVEISLVNG--------AKNLVVSGPPQSLYGLNLTLRKAKA-PSGLDQSRIPF 409
Query: 142 HERAEIFIKYIETTIVVRRVGKYLAVSA------------KLPEELVEPSIQDPNTLQLC 189
ER F R +L V++ + ++LV+ ++
Sbjct: 410 SERKLKF--------SNR----FLPVASPFHSHLLVPASDLINKDLVKNNVS----FNAK 453
Query: 190 TLGCPPSERLDIV--TSRGHMTDRDHALAKCKDTEELSNDIINNLTDYYLDWCVFDTMTA 247
+ P V T G D LS I + D C+ +
Sbjct: 454 DIQIP-------VYDTFDG------------SDLRVLSGSISERIVD-----CII-RLPV 488
Query: 248 GISYDFTAAAHSAQADVLRFDPSSLNNRTTL 278
+ +L F P + L
Sbjct: 489 ----KWETTTQFKATHILDFGPGGASGLGVL 515
Score = 33.9 bits (77), Expect = 0.076
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 62/232 (26%)
Query: 98 TNEKTYEAQADSPLPL-----SFINSGVNSHSKNADNVVLKV-----ESD-PSGH--HER 144
T + + +P L +++S V + VL + E+ G+ H
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 145 AEIFIKYIETTIVVRR--VGKYLA--VSAKLPEELVEPS-----IQDPNTLQLCTL---- 191
A ++ +TT+V + + Y+ + AK P + S + + N QL +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIFGGQ 163
Query: 192 GCPPSERLD----------------IVTSRGHMTDRDHALAKCKDTEELSNDIINNLTD- 234
G + + I S +++ + +I+ L +
Sbjct: 164 G-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 235 ------YYLDWCVFDTMTAGISYDF---TAAAH-SAQADVLRFDPSSLNNRT 276
YL + IS AH A +L F P L +
Sbjct: 223 SNTPDKDYLL-------SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Score = 27.7 bits (61), Expect = 5.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 243 DTMTAGIS---YDFTAAAHSAQADVLRFD 268
D AG S Y AA ++ ADV+ +
Sbjct: 1756 DATFAGHSLGEY----AALASLADVMSIE 1780
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 30/230 (13%), Positives = 61/230 (26%), Gaps = 103/230 (44%)
Query: 27 RRFKHCGLFGD-----PHLKTFNNDYQTCRVRGAWPLIDNPYLGVQVTNELIREGSPATV 81
+ +++C L FN +C++ L +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNL---SCKI-------------------L--------L 270
Query: 82 TTKKVTVIIKGRSTPCTNEKTYEAQADSPLPLSFINSGVNSHSKNADNVVLKVESDPSGH 141
TT+ V F+++ +H + L S
Sbjct: 271 TTRFKQVT------------------------DFLSAATTTH------ISLDHHSMTLTP 300
Query: 142 HERAEIFIKYIETTIVVRRVGKYLAVSAKLPEELVEPSIQDPNTLQLCTLGCPPSERLDI 201
E + +KY++ LP E++ + P +L + E +
Sbjct: 301 DEVKSLLLKYLDCRP------------QDLPREVLTTN---P--RRLSIIA----ESIRD 339
Query: 202 VTSRGHMTDR-DHALAKCKDTEELSNDI---INNLT-----DYYLDWCVF 242
+ D H + ++L+ I +N L + VF
Sbjct: 340 GLAT---WDNWKHV-----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Score = 35.6 bits (81), Expect = 0.020
Identities = 46/286 (16%), Positives = 82/286 (28%), Gaps = 93/286 (32%)
Query: 61 NPYLGVQVTNELIREGSPAT------VTTKKVTVIIKGRS----TPCTNEKTYEA----Q 106
NP + + E IR+G AT V K+T II+ S P K ++
Sbjct: 326 NP-RRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFP 382
Query: 107 ADSPLP---LS-----------------FINSG-VNSHSKN--------ADNVVLKVESD 137
+ +P LS V K + +K+E++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 138 PSGHH---ERAEIFIKYIETTIVVRRVGKYLA-------VSAKLPEELVE-PSI-QDPNT 185
+ H + I + ++ + +Y + + PE + + D
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 186 LQ-----LCTLGCPPSERLDIVTS----RGHMTDRDHALAKCKDTEELSNDIINNLTDYY 236
L+ T L+ + + ++ D D E L N I++ L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY------ERLVNAILDFLPKI- 555
Query: 237 LDWCVFDTMTAGISYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTE 282
I +T D+LR +L E
Sbjct: 556 --------EENLICSKYT--------DLLRI---ALMAEDEAIFEE 582
Score = 34.1 bits (77), Expect = 0.053
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 40/125 (32%)
Query: 199 LDIVTSRGHMTDRD------HALAK---CKDTEE-----LSN----DIINNLTD----YY 236
+D T +D A CKD ++ LS II +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 237 LDWCVFDTMTAGI----------SYDFTAAAHSAQADVLRFDPSSLNNRTTLYLTEPVNV 286
L W + + +Y F + + PS T +Y+ + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----QPSM---MTRMYIEQ-RDR 118
Query: 287 PDNTN 291
N N
Sbjct: 119 LYNDN 123
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 27.7 bits (62), Expect = 4.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 35 FGDPHLKTF-----NNDYQTCRVRGAWPLIDNPYLGVQVTNELIRE 75
FG P F N Y CR + W L+D +L + N +
Sbjct: 530 FGHPEWIDFPREGNNWSYDKCRRQ--WSLVDTDHLRYKYMNAFDQA 573
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.402
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,634,976
Number of extensions: 271538
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 14
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)