RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17001
         (295 letters)



>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 371

 Score = 28.0 bits (62), Expect = 1.4
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 69  TNELIREGSPATVTTKKVTVIIKGRSTPC 97
              + +E   AT   ++  +  KGR  P 
Sbjct: 313 VATISQEQKTATYDGEEGILAAKGRHDPA 341


>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
           (RpiA), lid domain {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 25.4 bits (56), Expect = 2.2
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 171 LPEELVEPSIQDPNTLQLCTLGCPPSERLDIVTSRGHMTDRDHALAKCKDTEELSNDIIN 230
           LP E V P  +     QL  LG  P  R  +VT  G++   D    +  D   + N I  
Sbjct: 5   LPVE-VIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVI-LDVHGMEILDPIAMENAINA 62


>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter
           pylori [TaxId: 210]}
          Length = 365

 Score = 27.3 bits (60), Expect = 2.5
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 72  LIREGSPATVTTKKVTVIIKGRSTPC 97
           + +      +   +   ++KGR  PC
Sbjct: 301 IFQPQRTIDINGNECECLLKGRHDPC 326


>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
           jejuni [TaxId: 197]}
          Length = 360

 Score = 27.2 bits (60), Expect = 2.7
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 72  LIREGSPATVTTKKVTVIIKGRSTPC 97
           +  +          +   +KGR  PC
Sbjct: 298 IFAKQESIDKFGNNLKFELKGRHDPC 323


>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 397

 Score = 26.1 bits (57), Expect = 5.3
 Identities = 5/26 (19%), Positives = 8/26 (30%)

Query: 72  LIREGSPATVTTKKVTVIIKGRSTPC 97
           L        + TK+     K R+   
Sbjct: 325 LKNPLRSVDIETKEEMKAGKERTDIV 350


>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 388

 Score = 26.1 bits (57), Expect = 6.2
 Identities = 5/29 (17%), Positives = 8/29 (27%)

Query: 69  TNELIREGSPATVTTKKVTVIIKGRSTPC 97
              L +      + T +       RS P 
Sbjct: 313 IPTLYKPLMSVDIETHEPYKATVERSDPT 341


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,137,984
Number of extensions: 52882
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 6
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)